Query 029541
Match_columns 192
No_of_seqs 115 out of 295
Neff 3.3
Searched_HMMs 29240
Date Tue Mar 26 00:05:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029541.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029541hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_H AED, cytochrome C oxida 100.0 7.5E-38 2.6E-42 233.0 7.8 77 116-192 6-85 (85)
2 2lqt_A Coiled-coil-helix-coile 97.0 0.00073 2.5E-08 50.6 4.5 52 138-190 15-66 (85)
3 1ei0_A P8MTCP1; helix-turn-hel 88.8 0.26 8.9E-06 31.3 2.4 33 139-171 3-35 (38)
4 2lql_A Coiled-coil-helix-coile 84.7 0.36 1.2E-05 36.9 1.7 37 133-169 55-91 (113)
5 1hp8_A HU-P8; leukemia, cystei 80.9 1 3.5E-05 32.2 2.7 35 137-171 5-39 (68)
6 2lql_A Coiled-coil-helix-coile 76.4 1.6 5.5E-05 33.2 2.7 52 136-187 12-77 (113)
7 1kn1_B Allophycocyanin; helix- 41.3 44 0.0015 26.3 5.2 58 121-179 64-129 (161)
8 2vml_B Phycocyanin beta chain; 40.9 43 0.0015 26.8 5.2 62 122-184 66-136 (172)
9 2vml_A Phycocyanin alpha chain 38.2 50 0.0017 26.0 5.1 61 123-184 67-136 (162)
10 3o18_A C-phycocyanin alpha sub 34.8 66 0.0023 25.4 5.3 63 122-185 66-139 (162)
11 3l0f_B C-phycocyanin beta chai 30.5 52 0.0018 26.4 4.1 62 122-184 66-136 (172)
12 1kn1_A Allophycocyanin; helix- 29.5 1.2E+02 0.004 23.9 5.9 57 122-179 64-128 (160)
13 1uzc_A Hypothetical protein FL 25.7 28 0.00094 24.3 1.4 24 121-144 40-66 (71)
14 2c7l_B Phycoerythrocyanin beta 25.2 75 0.0026 25.4 4.1 61 123-184 67-136 (172)
15 2dod_A Transcription elongatio 25.1 30 0.001 24.9 1.6 24 121-144 42-67 (82)
16 1xg0_C B-phycoerythrin beta ch 22.3 1.4E+02 0.0047 24.0 5.2 61 123-184 67-136 (177)
17 2j96_A Phycoerythrocyanin alph 21.9 1.2E+02 0.0043 23.8 4.8 62 123-184 67-138 (162)
No 1
>1v54_H AED, cytochrome C oxidase polypeptide VIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.51.1.1 PDB: 1oco_H* 1occ_H* 1ocz_H* 1ocr_H* 1v55_H* 2dyr_H* 2dys_H* 2eij_H* 2eik_H* 2eil_H* 2eim_H* 2ein_H* 2occ_H* 2ybb_S* 2zxw_H* 3abk_H* 3abl_H* 3abm_H* 3ag1_H* 3ag2_H* ...
Probab=100.00 E-value=7.5e-38 Score=233.00 Aligned_cols=77 Identities=42% Similarity=1.011 Sum_probs=72.5
Q ss_pred CCCcccccCCCCCCCCChHHHHHHHHhhhhhhhhhhh---cCCChhhHHHHHHHHHhhChHHHHHHHHHhhhcCCCCCCC
Q 029541 116 TPDIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAA---KGEGAPECDKFAKYYRALCPSDWIEKWNEQRENGTFPGPL 192 (192)
Q Consensus 116 ~~~~~l~TaP~DpRFPn~NQrK~CW~~YddY~rCl~~---kGED~s~Ckkfrk~YeSlCP~sWVE~WDEqRe~GtFpgki 192 (192)
++..+|+|+|+||||||+|||+|||++|++||+|+++ +|+|.++|++|++.|+++||.+||++||+||++|+|||+|
T Consensus 6 ~~~~~~~tap~D~rFPn~nq~k~Cw~~y~df~~C~~~l~~~ged~~~C~~~~~~y~slCP~sWVe~wdeqR~~g~f~~k~ 85 (85)
T 1v54_H 6 AKIKNYQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVSTWDDRRAEGTFPGKI 85 (85)
T ss_dssp -CCCCCCSCCCCTTSCSSBCHHHHHHHHHHHHHHHHHHHHHTCCGGGGHHHHHHHHHHSCHHHHHHHHHHHHHTCCCSCC
T ss_pred ccccccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcChHHHHHHHHHHHHhCCCCCCC
Confidence 4556799999999999999999999999999999555 9999999999999999999999999999999999999997
No 2
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=97.00 E-value=0.00073 Score=50.57 Aligned_cols=52 Identities=21% Similarity=0.448 Sum_probs=48.6
Q ss_pred HHHHhhhhhhhhhhhcCCChhhHHHHHHHHHhhChHHHHHHHHHhhhcCCCCC
Q 029541 138 HCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWIEKWNEQRENGTFPG 190 (192)
Q Consensus 138 ~CW~~YddY~rCl~~kGED~s~Ckkfrk~YeSlCP~sWVE~WDEqRe~GtFpg 190 (192)
-|...+..=++||+.++.|.+.|..|+..|+ .|-..|++.=.++|.+|+.|.
T Consensus 15 PC~~e~~~S~kCL~~n~yDr~~C~~yF~~Yk-~CKk~W~~v~~eRRr~Gi~P~ 66 (85)
T 2lqt_A 15 PCLSESDASTRCLDENNYDRERCSTYFLRYK-NCRRFWNSIVMQRRKNGVKPF 66 (85)
T ss_dssp CCHHHHHHHHHHHHHTTTCTTTTHHHHHHHH-HHHHHHHHHHHHHHTTCCSCS
T ss_pred ccHHHHHHHHHHHHHcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCC
Confidence 3999999999999999999999999999997 599999999999999999885
No 3
>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1
Probab=88.81 E-value=0.26 Score=31.32 Aligned_cols=33 Identities=15% Similarity=0.374 Sum_probs=28.1
Q ss_pred HHHhhhhhhhhhhhcCCChhhHHHHHHHHHhhC
Q 029541 139 CFTRYIEYHRCVAAKGEGAPECDKFAKYYRALC 171 (192)
Q Consensus 139 CW~~YddY~rCl~~kGED~s~Ckkfrk~YeSlC 171 (192)
|-...-.|..||..+|-|.+.|..+...|+.-|
T Consensus 3 C~~~a~a~q~CL~~n~~d~skCq~~id~l~~Cc 35 (38)
T 1ei0_A 3 CQKQAAEIQKCLQANSYLESKCQAVIQELKKCA 35 (38)
T ss_dssp SHHHHHHHHHHHHHTTTCGGGTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 455567899999999999999999988888655
No 4
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=84.74 E-value=0.36 Score=36.88 Aligned_cols=37 Identities=8% Similarity=0.391 Sum_probs=32.6
Q ss_pred hHHHHHHHHhhhhhhhhhhhcCCChhhHHHHHHHHHh
Q 029541 133 TNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRA 169 (192)
Q Consensus 133 ~NQrK~CW~~YddY~rCl~~kGED~s~Ckkfrk~YeS 169 (192)
+.=+++|-.-+..|+.||+.+..+...|.+..+.|+.
T Consensus 55 ~~I~~~C~~ef~~y~~CL~~n~~~~~~Cr~~~~~f~~ 91 (113)
T 2lql_A 55 RQIRQACAQPFEAFEECLRQNEAAVGNCAEHMRRFLQ 91 (113)
T ss_dssp HHHHHHTHHHHHHHHHHHHHCTTCTTTCCSHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence 5567899999999999999999999999988888765
No 5
>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A
Probab=80.94 E-value=1 Score=32.21 Aligned_cols=35 Identities=20% Similarity=0.469 Sum_probs=29.6
Q ss_pred HHHHHhhhhhhhhhhhcCCChhhHHHHHHHHHhhC
Q 029541 137 RHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALC 171 (192)
Q Consensus 137 K~CW~~YddY~rCl~~kGED~s~Ckkfrk~YeSlC 171 (192)
.-|-..--.|..||..+|-|.+.|..+...|+.-|
T Consensus 5 dPC~~~AcaiQ~CL~~N~yd~skCq~~id~L~eCc 39 (68)
T 1hp8_A 5 DPCQKQACEIQKCLQANSYMESKCQAVIQELRKCC 39 (68)
T ss_dssp CTTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 34667778999999999999999999988887644
No 6
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=76.37 E-value=1.6 Score=33.25 Aligned_cols=52 Identities=27% Similarity=0.417 Sum_probs=38.7
Q ss_pred HHHHHHhhhhhhhhhhhcCC-C----------hhhHHH---HHHHHHhhChHHHHHHHHHhhhcCC
Q 029541 136 TRHCFTRYIEYHRCVAAKGE-G----------APECDK---FAKYYRALCPSDWIEKWNEQRENGT 187 (192)
Q Consensus 136 rK~CW~~YddY~rCl~~kGE-D----------~s~Ckk---frk~YeSlCP~sWVE~WDEqRe~Gt 187 (192)
.++|-.-..+|++|+..+.+ | ...|-. |.+.-++.|...+-.||.=.|.+..
T Consensus 12 ak~C~~~~~~f~~C~~~~~~~dp~~Cl~eg~~vt~Ca~~~p~~~~I~~~C~~ef~~y~~CL~~n~~ 77 (113)
T 2lql_A 12 ARYCGRELEQYGQCVAAKPESWQRDCHYLKMSIAQCTSSHPIIRQIRQACAQPFEAFEECLRQNEA 77 (113)
T ss_dssp --CCHHHHHHHHHHHHHCTTHHHHTCSHHHHHHHHHHHTCCCCHHHHHHTHHHHHHHHHHHHHCTT
T ss_pred HHHccHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHccc
Confidence 47899999999999976643 3 455643 4566777999999999998877654
No 7
>1kn1_B Allophycocyanin; helix-turn-helix, electron transport; HET: CYC; 2.20A {Porphyra yezoensis} SCOP: a.1.1.3 PDB: 1all_B* 3dbj_B* 2v8a_B* 1b33_B* 2vjt_B*
Probab=41.30 E-value=44 Score=26.35 Aligned_cols=58 Identities=16% Similarity=0.168 Sum_probs=43.3
Q ss_pred cccCCCCCCCCChHHHHHHHHhhhhhhhhhh---hcCCC---hhhH-HHHHHHHHh-hChHHHHHHH
Q 029541 121 LETAPADFRFPTTNQTRHCFTRYIEYHRCVA---AKGEG---APEC-DKFAKYYRA-LCPSDWIEKW 179 (192)
Q Consensus 121 l~TaP~DpRFPn~NQrK~CW~~YddY~rCl~---~kGED---~s~C-kkfrk~YeS-lCP~sWVE~W 179 (192)
.-+.|....||+.. ...||.-..-|.|++. .-|+- ...| .++|..|++ .||..|+-.+
T Consensus 64 ~l~~pgg~~y~~~r-~~~ClRD~~~~LR~itYa~lagd~~~L~e~~L~glreiy~algvp~~~~~~~ 129 (161)
T 1kn1_B 64 DITRPGGNMYTTRR-YAACIRDLDYYLRYATYAMLAGDPSILDERVLNGLKETYNSLGVPIGATIQA 129 (161)
T ss_dssp GGGSTTSTTCSHHH-HHHHHHHHHHHHHHHHHHHHHTSTHHHHHHTSTTHHHHHHHHTCCHHHHHHH
T ss_pred CccCCCCCCccHHH-HHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 34566667777544 8899999999999986 22332 3445 688999999 8999998766
No 8
>2vml_B Phycocyanin beta chain; photosynthesis, light-harvesting, electron transport, transp chromophore, bIle pigment, phycobilisome; HET: CYC; 2.40A {Gloeobacter violaceus} PDB: 2vjr_B*
Probab=40.87 E-value=43 Score=26.80 Aligned_cols=62 Identities=18% Similarity=0.266 Sum_probs=45.1
Q ss_pred ccCCCCCCCCChHHHHHHHHhhhhhhhhhh---hcCCC---hhhHH-HHHHHHHh-hChHHH-HHHHHHhhh
Q 029541 122 ETAPADFRFPTTNQTRHCFTRYIEYHRCVA---AKGEG---APECD-KFAKYYRA-LCPSDW-IEKWNEQRE 184 (192)
Q Consensus 122 ~TaP~DpRFPn~NQrK~CW~~YddY~rCl~---~kGED---~s~Ck-kfrk~YeS-lCP~sW-VE~WDEqRe 184 (192)
-+.|....|++.. ...||.-..-|.|++. .-|+- ...|. .+|..|++ .||..| +.-+...++
T Consensus 66 l~~~gg~~y~~~r-~~~C~RD~~~~LR~itYa~lagd~~~L~~~~L~gLrE~y~algvp~~~~~~a~~~mk~ 136 (172)
T 2vml_B 66 LIRPGGNAYPNRR-MAACLRDMEIILRYVSYALLAGDASVLEDRCLNGLKETYVALGTPTRSVARAVQLMKE 136 (172)
T ss_dssp GGSTTSTTCSHHH-HHHHHHHHHHHHHHHHHHHHHTSSHHHHHHTTTTHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ccCCCCCCcchHH-HHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 3667777786544 7889999999999976 22332 44454 79999998 899999 666665554
No 9
>2vml_A Phycocyanin alpha chain; photosynthesis, light-harvesting, electron transport, transp chromophore, bIle pigment, phycobilisome; HET: CYC; 2.40A {Gloeobacter violaceus} PDB: 2vjr_A*
Probab=38.18 E-value=50 Score=26.02 Aligned_cols=61 Identities=20% Similarity=0.345 Sum_probs=44.3
Q ss_pred cCCCCCCCCChHHHHHHHHhhhhhhhhhh---hcCCC----hhhHHHHHHHHHh-hChHHH-HHHHHHhhh
Q 029541 123 TAPADFRFPTTNQTRHCFTRYIEYHRCVA---AKGEG----APECDKFAKYYRA-LCPSDW-IEKWNEQRE 184 (192)
Q Consensus 123 TaP~DpRFPn~NQrK~CW~~YddY~rCl~---~kGED----~s~Ckkfrk~YeS-lCP~sW-VE~WDEqRe 184 (192)
+.|....|++.. ...||.-..-|.|++. .-|+- .--=.++|..|++ .||..| +..+...++
T Consensus 67 ~~~gG~~y~~~~-~~~ClRD~~~~LRyitYa~lagd~~~L~e~~L~glreiy~algvp~~~~~~a~~~mk~ 136 (162)
T 2vml_A 67 TQPGQMGYGDTN-QAKCARDISHYLRFITYSLVAGGTGPLDDYIVAGLREVNRTFNLSPSWYIEALKHIKG 136 (162)
T ss_dssp GSTTSTTCSHHH-HHHHHHHHHHHHHHHHHHHHHTSSHHHHHHTTTTHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCCCCcccHHH-HHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 556677887544 8899999999999976 22322 2224578999999 999999 667766554
No 10
>3o18_A C-phycocyanin alpha subunit; phycobilisome, photosynthesis, light harvesting, cyanobacter; HET: CYC; 1.35A {Thermosynechococcus vulcanus} SCOP: a.1.1.3 PDB: 1i7y_A* 1on7_A* 1ktp_A* 3o2c_A* 3l0f_A* 1jbo_A* 3kvs_A* 3brp_A* 1phn_A* 2bv8_A* 1f99_A* 1gh0_A* 2uum_A* 1ha7_A* 1cpc_A* 2uul_C* 2uul_A* 2uun_A*
Probab=34.79 E-value=66 Score=25.41 Aligned_cols=63 Identities=14% Similarity=0.214 Sum_probs=44.7
Q ss_pred ccCCCCCCCCChH-HHHHHHHhhhhhhhhhh---hcCCChhhHH-----HHHHHHHh-hChHHHHHH-HHHhhhc
Q 029541 122 ETAPADFRFPTTN-QTRHCFTRYIEYHRCVA---AKGEGAPECD-----KFAKYYRA-LCPSDWIEK-WNEQREN 185 (192)
Q Consensus 122 ~TaP~DpRFPn~N-QrK~CW~~YddY~rCl~---~kGED~s~Ck-----kfrk~YeS-lCP~sWVE~-WDEqRe~ 185 (192)
-+.|....|++.. ....||.-..-|.|++. .-|+ ...-. ++|..|++ .||.+|+-. +...++.
T Consensus 66 l~~~gG~~y~~~~~~~~~C~RD~~~~LR~itYa~laGd-~~~L~e~~L~glre~y~algvp~~~~v~al~~mk~~ 139 (162)
T 3o18_A 66 TTTMQGSQYASTPEGKAKCARDIGYYLRMITYCLVAGG-TGPMDEYLIAGLSEINSTFDLSPSWYIEALKYIKAN 139 (162)
T ss_dssp GGTSCSTTSSSSHHHHHHHHHHHHHHHHHHHHHHHHTS-SHHHHHHTTTTHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHCC-hHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHh
Confidence 4677778888764 47899999999999986 2233 23332 58999999 899988763 3444443
No 11
>3l0f_B C-phycocyanin beta chain; photosynthesis, photosystem II, light harvesting proteins, thermostability, bIle pigment; HET: CYC; 1.35A {Thermosynechococcus elongatus} SCOP: a.1.1.3 PDB: 1i7y_B* 1ktp_B* 1on7_B* 1jbo_B* 3o18_B* 3o2c_B* 1phn_B* 3kvs_B* 3brp_B* 1gh0_B* 1cpc_B* 1ha7_B* 2bv8_B* 2uul_D* 2uum_X* 1f99_B* 2uum_B* 2uul_B* 2uun_B* 2uul_H* ...
Probab=30.48 E-value=52 Score=26.36 Aligned_cols=62 Identities=15% Similarity=0.278 Sum_probs=44.1
Q ss_pred ccCCCCCCCCChHHHHHHHHhhhhhhhhhh---hcCCC---hhhHH-HHHHHHHh-hChHHHHH-HHHHhhh
Q 029541 122 ETAPADFRFPTTNQTRHCFTRYIEYHRCVA---AKGEG---APECD-KFAKYYRA-LCPSDWIE-KWNEQRE 184 (192)
Q Consensus 122 ~TaP~DpRFPn~NQrK~CW~~YddY~rCl~---~kGED---~s~Ck-kfrk~YeS-lCP~sWVE-~WDEqRe 184 (192)
-+.|....|++.. ...||.-..-|.|++. .-|+. ...|. ++|..|++ .||.+|+- .+...++
T Consensus 66 l~~~gg~~y~~~~-~~~C~RD~~~~LR~itYa~laGd~~~L~e~~L~glrE~y~algvp~~~~v~al~~mk~ 136 (172)
T 3l0f_B 66 LIQPGGNAYTNRR-MAACLRDMEIILRYVTYAILAGDSSVLDDRCLNGLRETYQALGTPGSSVAVAIQKMKD 136 (172)
T ss_dssp GTSTTSTTCSHHH-HHHHHHHHHHHHHHHHHHHHHTSSHHHHHHTTTTHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcHHH-HHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Confidence 3567777776654 6899999999999986 22332 34454 78999998 89987765 6655444
No 12
>1kn1_A Allophycocyanin; helix-turn-helix, electron transport; HET: CYC; 2.20A {Porphyra yezoensis} SCOP: a.1.1.3 PDB: 3dbj_A* 2v8a_A* 1b33_A* 2vjt_A* 1all_A*
Probab=29.47 E-value=1.2e+02 Score=23.87 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=42.7
Q ss_pred ccCCCCCCCCChHHHHHHHHhhhhhhhhhh---hcCCC---h-hhHHHHHHHHHh-hChHHHHHHH
Q 029541 122 ETAPADFRFPTTNQTRHCFTRYIEYHRCVA---AKGEG---A-PECDKFAKYYRA-LCPSDWIEKW 179 (192)
Q Consensus 122 ~TaP~DpRFPn~NQrK~CW~~YddY~rCl~---~kGED---~-s~Ckkfrk~YeS-lCP~sWVE~W 179 (192)
-+.|....||+.. ...||.-..-|.|++. .-|+- . --=.++|..|++ .||..|+-.+
T Consensus 64 l~~~gg~~y~~~~-~~~ClRD~~~~LRyitYa~lagd~~~L~e~~L~glreiy~algvp~~~~~~~ 128 (160)
T 1kn1_A 64 VVSPGGNAYGEEM-TATCLRDLDYYLRLVTYGIVSGDVTPIEEIGLVGVREMYKSLGTPISAVAEG 128 (160)
T ss_dssp TSSSSCSSCSTTH-HHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHTTTHHHHHHHHTCCHHHHHHH
T ss_pred ccCCCCCcccHHH-HHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHhCCChHHHHHH
Confidence 3567777888755 8899999999999986 22332 2 223578999999 8999999876
No 13
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=25.67 E-value=28 Score=24.34 Aligned_cols=24 Identities=17% Similarity=0.407 Sum_probs=19.5
Q ss_pred cccCCCCCCC---CChHHHHHHHHhhh
Q 029541 121 LETAPADFRF---PTTNQTRHCFTRYI 144 (192)
Q Consensus 121 l~TaP~DpRF---Pn~NQrK~CW~~Yd 144 (192)
++..-.|||| ++...|+.||..|.
T Consensus 40 ~~~i~~DpRY~al~~~~eRk~~F~ey~ 66 (71)
T 1uzc_A 40 MKMIINDPRYSALAKLSEKKQAFNAYK 66 (71)
T ss_dssp HHHHHTSGGGGGCSSHHHHHHHHHHHH
T ss_pred HHHHccCccccccCCHHHHHHHHHHHH
Confidence 4556789998 46899999999885
No 14
>2c7l_B Phycoerythrocyanin beta chain; phycoviolobilin, phycocyanobilin, bIle pigment, chromophore, electron transport, photosynthesis; HET: BLA CYC; 2.85A {Mastigocladus laminosus} PDB: 2c7k_B* 2c7j_B*
Probab=25.23 E-value=75 Score=25.39 Aligned_cols=61 Identities=21% Similarity=0.272 Sum_probs=44.4
Q ss_pred cCCCCCCCCChHHHHHHHHhhhhhhhhhh---hcCCC---hhhHH-HHHHHHHh-hChHHH-HHHHHHhhh
Q 029541 123 TAPADFRFPTTNQTRHCFTRYIEYHRCVA---AKGEG---APECD-KFAKYYRA-LCPSDW-IEKWNEQRE 184 (192)
Q Consensus 123 TaP~DpRFPn~NQrK~CW~~YddY~rCl~---~kGED---~s~Ck-kfrk~YeS-lCP~sW-VE~WDEqRe 184 (192)
+.|....|++.. ...||.-..-|.|++. .-|+- ...|. ++|..|++ .+|..| +..+...++
T Consensus 67 ~~pgG~~y~~~~-~~~ClRD~~~~LRyitYa~lagd~~~L~e~~L~glrE~y~algvp~~~~~~a~~~mk~ 136 (172)
T 2c7l_B 67 FNPGGPCFHHRN-QAACIRDLGFILRYVTYSVLAGDTSVMDDRCLNGLRETYQALGTPGDAVASGIKKMKE 136 (172)
T ss_dssp HSTTSTTCSHHH-HHHHHHHHHHHHHHHHHHHHHSSSHHHHHTTTTTHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred cCCCCCCccHHH-HHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 556677776544 8899999999999976 22332 44454 89999997 899999 477666554
No 15
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=25.14 E-value=30 Score=24.87 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=18.9
Q ss_pred cccCCCCCCCC--ChHHHHHHHHhhh
Q 029541 121 LETAPADFRFP--TTNQTRHCFTRYI 144 (192)
Q Consensus 121 l~TaP~DpRFP--n~NQrK~CW~~Yd 144 (192)
|.-.-+||||- +...||.||+.|.
T Consensus 42 ~~~i~~DpRY~aL~~~eRK~~F~~y~ 67 (82)
T 2dod_A 42 LHKIVFDPRYLLLNPKERKQVFDQYV 67 (82)
T ss_dssp HHHHHTCSGGGTSCHHHHHHHHHHHH
T ss_pred HHHHccCCccccCCHHHHHHHHHHHH
Confidence 45567899984 4889999998875
No 16
>1xg0_C B-phycoerythrin beta chain; light-harvesting protein, cryptophyte, photosynthesis; HET: LYZ DBV PEB; 0.97A {Rhodomonas SP} SCOP: a.1.1.3 PDB: 1qgw_C* 1xf6_C* 1lia_B* 1eyx_B* 2vjh_B* 1b8d_B*
Probab=22.30 E-value=1.4e+02 Score=23.99 Aligned_cols=61 Identities=11% Similarity=0.199 Sum_probs=43.5
Q ss_pred cCCCCCCCCChHHHHHHHHhhhhhhhhhh---hcCCC---hhh-HHHHHHHHHh-hChHHH-HHHHHHhhh
Q 029541 123 TAPADFRFPTTNQTRHCFTRYIEYHRCVA---AKGEG---APE-CDKFAKYYRA-LCPSDW-IEKWNEQRE 184 (192)
Q Consensus 123 TaP~DpRFPn~NQrK~CW~~YddY~rCl~---~kGED---~s~-Ckkfrk~YeS-lCP~sW-VE~WDEqRe 184 (192)
+.|....|++. ....||.-..-|.|++. .-|+- ... =.++|..|++ .||..| +.-+...++
T Consensus 67 ~~pGGn~y~~~-r~~~ClRD~~~~LRyitYa~laGd~~~L~e~~L~glrEiy~algvp~~~~~~a~~~mk~ 136 (177)
T 1xg0_C 67 ISPSGNCYTNR-RMAACLRDGEIILRYVSYALLSGDASVLEDRCLNGLKETYSSLGVPANSNARAVSIMKA 136 (177)
T ss_dssp GSTTSTTCSHH-HHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHTTTTHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCCCCccHH-HHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHhHHHHHHHhCCChHHHHHHHHHHHH
Confidence 56667778764 48899999999999976 22332 222 4578999996 899999 555665554
No 17
>2j96_A Phycoerythrocyanin alpha chain; electron transport, Z- to E-isomerization, transport, chromophore, bIle pigment, phycobilisome; HET: PVN; 2.25A {Mastigocladus laminosus} PDB: 2c7k_A* 2c7j_A* 2c7l_A*
Probab=21.90 E-value=1.2e+02 Score=23.75 Aligned_cols=62 Identities=15% Similarity=0.237 Sum_probs=44.5
Q ss_pred cCCCCCCCCChH-HHHHHHHhhhhhhhhhh---hcCCC---hhhH-HHHHHHHHh-hChHHHH-HHHHHhhh
Q 029541 123 TAPADFRFPTTN-QTRHCFTRYIEYHRCVA---AKGEG---APEC-DKFAKYYRA-LCPSDWI-EKWNEQRE 184 (192)
Q Consensus 123 TaP~DpRFPn~N-QrK~CW~~YddY~rCl~---~kGED---~s~C-kkfrk~YeS-lCP~sWV-E~WDEqRe 184 (192)
+.|....|++.. ....||.-..-|.|++. .-|+- ...| .++|..|++ .||..|+ .-+...++
T Consensus 67 ~~~ggn~y~~~~~~~~~C~RD~~~~LR~itYa~lagd~~~L~~~~L~glreiy~algvp~~~~~~a~~~mk~ 138 (162)
T 2j96_A 67 TQMQGPQYASTPEGKAKCVRDIDHYLRTISYCCVVGGTGPLDDYVVAGLKEFNSALGLSPSWYIAALEFVRD 138 (162)
T ss_dssp TSSCSSSSCCSHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHTTTTHHHHTTTTCCCHHHHHHHHHHHHH
T ss_pred cCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 566677887754 47889999999999976 22332 2333 468999999 8999998 54666554
Done!