BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029542
(192 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TWL|A Chain A, Inorganic Pyrophosphatase From Pyrococcus Furiosus
Pfu-264096-001
Length = 186
Score = 129 bits (325), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 99/171 (57%), Gaps = 22/171 (12%)
Query: 34 AAHPWHDLEIGPGAPAVCNCV----------------------DRVLYSSVVYPHNYGFI 71
++P+HDLE GP P V + DRVLYS YP +YG I
Sbjct: 8 GSNPFHDLEPGPDVPEVVYAIIEIPKGSRNKYELDKKTGLLKLDRVLYSPFFYPVDYGII 67
Query: 72 PRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHY 131
PRT ED DP D++V+M+EPV P + + R IGL MID G+KD K++AV +DP F+ +
Sbjct: 68 PRTWYEDDDPFDIMVIMREPVYPLTIIEARPIGLFKMIDSGDKDYKVLAVPVEDPYFKDW 127
Query: 132 KDIKELPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAAIEAIKYSMDLY 182
KDI ++P L EI FF+ YK+ + K++ VE + AEAA I ++++Y
Sbjct: 128 KDIDDVPKAFLDEIAHFFKRYKELQGKEIIVEGWEGAEAAKREILRAIEMY 178
>pdb|1UDE|A Chain A, Crystal Structure Of The Inorganic Pyrophosphatase From
The Hyperthermophilic Archaeon Pyrococcus Horikoshii Ot3
pdb|1UDE|B Chain B, Crystal Structure Of The Inorganic Pyrophosphatase From
The Hyperthermophilic Archaeon Pyrococcus Horikoshii Ot3
pdb|1UDE|C Chain C, Crystal Structure Of The Inorganic Pyrophosphatase From
The Hyperthermophilic Archaeon Pyrococcus Horikoshii Ot3
Length = 195
Score = 127 bits (318), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 97/169 (57%), Gaps = 22/169 (13%)
Query: 36 HPWHDLEIGPGAPAVCNCV----------------------DRVLYSSVVYPHNYGFIPR 73
+P+HDLE GP P V + DRVLY+ YP +YG IPR
Sbjct: 19 NPFHDLEPGPNVPEVVYALIEIPKGSRNKYELDKETGLLKLDRVLYTPFHYPVDYGIIPR 78
Query: 74 TICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKD 133
T ED DP D++V+M+EP P + + R IGL MID G+KD K++AV +DP F+ +KD
Sbjct: 79 TWYEDGDPFDIMVIMREPTYPLTIIEARPIGLFKMIDSGDKDYKVLAVPVEDPYFKDWKD 138
Query: 134 IKELPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAAIEAIKYSMDLY 182
I ++P L EI FF+ YK+ E K++ VE + AEAA I ++++Y
Sbjct: 139 ISDVPKAFLDEIAHFFKRYKELEGKEIIVEGWEGAEAAKREILRAIEMY 187
>pdb|3I98|A Chain A, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|B Chain B, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|C Chain C, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|D Chain D, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|E Chain E, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|F Chain F, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3Q4W|A Chain A, The Structure Of Archaeal Inorganic Pyrophosphatase In
Complex With Substrate
pdb|3Q5V|A Chain A, The Structure Of Inorganic Pyrophosphatase From
Thermococcus Thioreducens In Complex With Magnesium And
Sulfate
pdb|3Q5V|B Chain B, The Structure Of Inorganic Pyrophosphatase From
Thermococcus Thioreducens In Complex With Magnesium And
Sulfate
pdb|3Q9M|A Chain A, The Structure Archaeal Inorganic Pyrophosphatase In
Complex With Pyrophosphate
pdb|3Q9M|B Chain B, The Structure Archaeal Inorganic Pyrophosphatase In
Complex With Pyrophosphate
pdb|3Q9M|C Chain C, The Structure Archaeal Inorganic Pyrophosphatase In
Complex With Pyrophosphate
pdb|3Q3L|A Chain A, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|B Chain B, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|C Chain C, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|D Chain D, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|E Chain E, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|F Chain F, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3R5U|A Chain A, The Structure Of Manganese Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase
pdb|3R5U|B Chain B, The Structure Of Manganese Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase
pdb|3R5V|A Chain A, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|B Chain B, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|C Chain C, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|D Chain D, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|E Chain E, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|F Chain F, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
Length = 178
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 94/171 (54%), Gaps = 22/171 (12%)
Query: 36 HPWHDLEIGPGAPAVCNCV----------------------DRVLYSSVVYPHNYGFIPR 73
+P+H+LE GP P V + DRVLYS YP +YG IP+
Sbjct: 2 NPFHELEPGPEVPEVVYALIEIPKGSRNKYELDKKTGLLKLDRVLYSPFFYPVDYGIIPQ 61
Query: 74 TICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKD 133
T +D DP D++V+M+EPV P + + R IG+M M D G+KD K++AV +DP F +KD
Sbjct: 62 TWYDDGDPFDIMVIMREPVYPLTIIEARPIGIMKMEDSGDKDWKVLAVPVEDPYFNDWKD 121
Query: 134 IKELPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAAIEAIKYSMDLYAS 184
I ++P L EI FF+ YK+ + K +E + AE A I ++++Y
Sbjct: 122 ISDVPKAFLDEIAHFFQRYKELQGKTTKIEGWGNAEEAKREILRAIEMYKE 172
>pdb|3Q46|A Chain A, Magnesium Activated Inorganic Pyrophosphatase From
Thermococcus Thioreducens Bound To Hydrolyzed Product At
0.99 Angstrom Resolution
Length = 178
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 94/169 (55%), Gaps = 22/169 (13%)
Query: 36 HPWHDLEIGPGAPAVCNCV----------------------DRVLYSSVVYPHNYGFIPR 73
+P+H+LE GP P V + DRVLYS YP +YG IP+
Sbjct: 2 NPFHELEPGPEVPEVVYALIEIPKGSRNKYELDKATGLLKLDRVLYSPFFYPVDYGIIPQ 61
Query: 74 TICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKD 133
T +D DP D++V+M+EPV P + + R IG+M M D G+KD K++AV +DP F +KD
Sbjct: 62 TWYDDGDPFDIMVIMREPVYPLTIIEARPIGIMKMEDSGDKDWKVLAVPVEDPYFNDWKD 121
Query: 134 IKELPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAAIEAIKYSMDLY 182
I ++P L EI FF+ YK+ + K +E + AE A I ++++Y
Sbjct: 122 ISDVPKAFLDEIAHFFQRYKELQGKTTKIEGWGNAEEAKREILRAIEMY 170
>pdb|3R6E|A Chain A, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
pdb|3R6E|B Chain B, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
pdb|3R6E|C Chain C, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
pdb|3R6E|D Chain D, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
pdb|3R6E|E Chain E, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
pdb|3R6E|F Chain F, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
Length = 178
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 89/171 (52%), Gaps = 22/171 (12%)
Query: 36 HPWHDLEIGPGAPAVCNCV----------------------DRVLYSSVVYPHNYGFIPR 73
+P+H+LE GP P V + DRVLYS YP +YG IP+
Sbjct: 2 NPFHELEPGPEVPEVVYALIEIPKGSRNKYELDKKTGLLKLDRVLYSPFFYPVDYGIIPQ 61
Query: 74 TICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKD 133
T +D DP D+ V+ +EPV P + + R IG+ D G+KD K++AV +DP F +KD
Sbjct: 62 TWYDDGDPFDIXVIXREPVYPLTIIEARPIGIXKXEDSGDKDWKVLAVPVEDPYFNDWKD 121
Query: 134 IKELPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAAIEAIKYSMDLYAS 184
I ++P L EI FF+ YK+ + K +E + AE A I +++ Y
Sbjct: 122 ISDVPKAFLDEIAHFFQRYKELQGKTTKIEGWGNAEEAKREILRAIEXYKE 172
>pdb|2BQX|A Chain A, Inorganic Pyrophosphatase From The Pathogenic Bacterium
Helicobacter Pylori-Kinetic And Structural Properties
pdb|2BQY|A Chain A, Inorganic Pyrophosphatase From The Pathogenic Bacterium
Helicobacter Pylori-Kinetic And Structural Properties
Length = 173
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 80/132 (60%), Gaps = 3/132 (2%)
Query: 54 VDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGE 113
VDRVLY + YP NYGF+P T+ D DP+D LVL GS ++ R +G++ M D+
Sbjct: 40 VDRVLYGAQNYPANYGFVPNTLGSDGDPVDALVLSDVAFQAGSVVKARLVGVLNMEDESG 99
Query: 114 KDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAEA 170
D+K+IA+ D DP + KDI +L H L +I+ FFE YK E NK V V+ F E+
Sbjct: 100 MDEKLIALPIDKIDPTHSYVKDIDDLSKHTLDKIKHFFETYKDLEPNKWVKVKGFENKES 159
Query: 171 AIEAIKYSMDLY 182
AI+ ++ ++ Y
Sbjct: 160 AIKVLEKAIKAY 171
>pdb|1QEZ|A Chain A, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|B Chain B, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|C Chain C, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|D Chain D, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|E Chain E, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|F Chain F, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase
Length = 173
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 79/129 (61%), Gaps = 3/129 (2%)
Query: 54 VDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGE 113
VDRVLY+S+ YP NYGFIP T+ ED DP+DVLV+ + PGS + R IG++ M D+
Sbjct: 38 VDRVLYTSMNYPFNYGFIPGTLEEDGDPLDVLVITNYQLYPGSVIEVRPIGILYMKDEEG 97
Query: 114 KDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAEA 170
+D KI+AV D DP F + KDI +LP +I FFE YK+ E K V + + A
Sbjct: 98 EDAKIVAVPKDKTDPSFSNIKDINDLPQATKNKIVHFFEHYKELEPGKYVKISGWGSATE 157
Query: 171 AIEAIKYSM 179
A I+ ++
Sbjct: 158 AKNRIQLAI 166
>pdb|1YGZ|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Helicobacter Pylori
pdb|1YGZ|B Chain B, Crystal Structure Of Inorganic Pyrophosphatase From
Helicobacter Pylori
pdb|1YGZ|C Chain C, Crystal Structure Of Inorganic Pyrophosphatase From
Helicobacter Pylori
pdb|1YGZ|D Chain D, Crystal Structure Of Inorganic Pyrophosphatase From
Helicobacter Pylori
pdb|1YGZ|E Chain E, Crystal Structure Of Inorganic Pyrophosphatase From
Helicobacter Pylori
pdb|1YGZ|F Chain F, Crystal Structure Of Inorganic Pyrophosphatase From
Helicobacter Pylori
Length = 173
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 79/132 (59%), Gaps = 3/132 (2%)
Query: 54 VDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGE 113
VDRVLY + YP NYGF+P T+ D DP+D LVL GS ++ R +G++ D+
Sbjct: 40 VDRVLYGAQNYPANYGFVPNTLGSDGDPVDALVLSDVAFQAGSVVKARLVGVLNXEDESG 99
Query: 114 KDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAEA 170
D+K+IA+ D DP + KDI +L H L +I+ FFE YK E NK V V+ F E+
Sbjct: 100 XDEKLIALPIDKIDPTHSYVKDIDDLSKHTLDKIKHFFETYKDLEPNKWVKVKGFENKES 159
Query: 171 AIEAIKYSMDLY 182
AI+ ++ ++ Y
Sbjct: 160 AIKVLEKAIKAY 171
>pdb|2UXS|A Chain A, 2.7a Crystal Structure Of Inorganic Pyrophosphatase
(rv3628) From Mycobacterium Tuberculosis At Ph 7.5
pdb|2UXS|B Chain B, 2.7a Crystal Structure Of Inorganic Pyrophosphatase
(rv3628) From Mycobacterium Tuberculosis At Ph 7.5
pdb|2UXS|C Chain C, 2.7a Crystal Structure Of Inorganic Pyrophosphatase
(rv3628) From Mycobacterium Tuberculosis At Ph 7.5
Length = 169
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 78/132 (59%), Gaps = 1/132 (0%)
Query: 54 VDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGE 113
+DR LY+ + YP +YGFI T+ +D DP+D LVL+ +PV PG + R +G+ M+D+
Sbjct: 35 LDRYLYTPMAYPTDYGFIEDTLGDDGDPLDALVLLPQPVFPGVLVAARPVGMFRMVDEHG 94
Query: 114 KDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAEAAI 172
DDK++ V A DP + H +DI ++P L I+ FF YK E K V D++ A
Sbjct: 95 GDDKVLCVPAGDPRWDHVQDIGDVPAFELDAIKHFFVHYKDLEPGKFVKAADWVDRAEAE 154
Query: 173 EAIKYSMDLYAS 184
++ S++ + +
Sbjct: 155 AEVQRSVERFKA 166
>pdb|1SXV|A Chain A, 1.3a Crystal Structure Of Rv3628, Mycobacterium
Tuberculosis Inorganic Pyrophosphatase (Ppase) At Ph5.0
Length = 172
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 78/132 (59%), Gaps = 1/132 (0%)
Query: 54 VDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGE 113
+DR LY+ + YP +YGFI T+ +D DP+D LVL+ +PV PG + R +G+ M+D+
Sbjct: 38 LDRYLYTPMAYPTDYGFIEDTLGDDGDPLDALVLLPQPVFPGVLVAARPVGMFRMVDEHG 97
Query: 114 KDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAEAAI 172
DDK++ V A DP + H +DI ++P L I+ FF YK E K V D++ A
Sbjct: 98 GDDKVLCVPAGDPRWDHVQDIGDVPAFELDAIKHFFVHYKDLEPGKFVKAADWVDRAEAE 157
Query: 173 EAIKYSMDLYAS 184
++ S++ + +
Sbjct: 158 AEVQRSVERFKA 169
>pdb|1WCF|A Chain A, 1.54 A Crystal Structure Of Rv3628, Mycobacterium
Tuberculosis Inorganic Pyrophosphatase (Ppase) At Ph7.0
Length = 171
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 78/132 (59%), Gaps = 1/132 (0%)
Query: 54 VDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGE 113
+DR LY+ + YP +YGFI T+ +D DP+D LVL+ +PV PG + R +G+ M+D+
Sbjct: 37 LDRYLYTPMAYPTDYGFIEDTLGDDGDPLDALVLLPQPVFPGVLVAARPVGMFRMVDEHG 96
Query: 114 KDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAEAAI 172
DDK++ V A DP + H +DI ++P L I+ FF YK E K V D++ A
Sbjct: 97 GDDKVLCVPAGDPRWDHVQDIGDVPAFELDAIKHFFVHYKDLEPGKFVKAADWVDRAEAE 156
Query: 173 EAIKYSMDLYAS 184
++ S++ + +
Sbjct: 157 AEVQRSVERFKA 168
>pdb|2PRD|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Thermus Thermophilus
Length = 174
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 77/134 (57%), Gaps = 3/134 (2%)
Query: 54 VDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGE 113
+DRVL + YP +YGFIP T+ ED DP+D LVL P+LPG + R +GL+ M D+
Sbjct: 41 LDRVLPGAQFYPGDYGFIPSTLAEDGDPLDGLVLSTYPLLPGVVVEVRVVGLLLMEDEKG 100
Query: 114 KDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNENKK---VDVEDFLPAEA 170
D K+I V A+D H +DI ++P EI+ FFE YK E KK V V + +A
Sbjct: 101 GDAKVIGVVAEDQRLDHIQDIGDVPEGVKQEIQHFFETYKALEAKKGKWVKVTGWRDRKA 160
Query: 171 AIEAIKYSMDLYAS 184
A+E ++ + Y
Sbjct: 161 ALEEVRACIARYKG 174
>pdb|3SW5|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
pdb|3SW5|B Chain B, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
pdb|3SW5|C Chain C, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
pdb|3SW5|D Chain D, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
pdb|3SW5|E Chain E, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
pdb|3SW5|F Chain F, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
Length = 180
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 74/130 (56%), Gaps = 3/130 (2%)
Query: 54 VDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGE 113
VDR LY+S+VYP NYGF+P T+ ED DP+DVL+ P+LPG + IG + M D G
Sbjct: 46 VDRFLYTSMVYPGNYGFVPHTLSEDGDPIDVLICNTRPLLPGCVINVYPIGALIMEDDGG 105
Query: 114 KDDKIIAVCADD--PEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAEA 170
KD+KIIA+ + + D +LP L +I FFE YK E K +E +
Sbjct: 106 KDEKIIAIPTPKLTQRYNNIHDYTDLPEITLKQIEHFFEHYKDLEPGKWAKIEGWRDKSF 165
Query: 171 AIEAIKYSMD 180
A E IK +++
Sbjct: 166 AHELIKQAIE 175
>pdb|2EIP|A Chain A, Inorganic Pyrophosphatase
pdb|2EIP|B Chain B, Inorganic Pyrophosphatase
pdb|1IPW|A Chain A, Inorganic Pyrophosphatase From Escherichia Coli With Three
Magnesium Ions
pdb|1IPW|B Chain B, Inorganic Pyrophosphatase From Escherichia Coli With Three
Magnesium Ions
pdb|1JFD|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1JFD|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1FAJ|A Chain A, Inorganic Pyrophosphatase
pdb|1INO|A Chain A, Recombinant Inorganic Pyrophosphatase From Escherichia
Coli
Length = 175
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 77/130 (59%), Gaps = 3/130 (2%)
Query: 54 VDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGE 113
VDR + +++ YP NYG+I T+ D DP+DVLV P+ PGS +RCR +G++ M D+
Sbjct: 41 VDRFMSTAMFYPCNYGYINHTLSLDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAG 100
Query: 114 KDDKIIAV--CADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNENKK-VDVEDFLPAEA 170
+D K++AV E+ H KD+ +LP A+I FFE YK E K V VE + AEA
Sbjct: 101 EDAKLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEGWENAEA 160
Query: 171 AIEAIKYSMD 180
A I S +
Sbjct: 161 AKAEIVASFE 170
>pdb|3D53|A Chain A, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|B Chain B, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|C Chain C, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|D Chain D, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|E Chain E, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|F Chain F, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3EMJ|A Chain A, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|B Chain B, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|C Chain C, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|D Chain D, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|E Chain E, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|F Chain F, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|G Chain G, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|H Chain H, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|I Chain I, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|J Chain J, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|K Chain K, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|L Chain L, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
Length = 173
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 67/108 (62%), Gaps = 2/108 (1%)
Query: 54 VDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGE 113
VDR + +++ YP NYGFIP T+ D DP+DVLV+ PV+PGS ++CRAIG++ M D+
Sbjct: 42 VDRFMQTTMSYPCNYGFIPDTLSNDGDPVDVLVVAHHPVVPGSVIKCRAIGVLMMEDESG 101
Query: 114 KDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNENKK 159
D+KIIAV D F H K++ +L I FFE YK E K
Sbjct: 102 LDEKIIAVPTSKLDITFDHIKELDDLCEMLKKRIVHFFEHYKDLEKGK 149
>pdb|1OBW|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1OBW|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1OBW|C Chain C, Structure Of Inorganic Pyrophosphatase
pdb|1I6T|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1I40|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|2AU6|A Chain A, Crystal Structure Of Catalytic Intermediate Of Inorganic
Pyrophosphatase
pdb|2AU8|A Chain A, Catalytic Intermediate Structure Of Inorganic
Pyrophosphatase
pdb|2AU9|A Chain A, Inorganic Pyrophosphatase Complexed With Substrate
pdb|2AUU|A Chain A, Inorganic Pyrophosphatase Complexed With Magnesium
Pyrophosphate And Fluoride
pdb|1IGP|A Chain A, X-Ray Crystallographic Studies Of Recombinant Inorganic
Pyrophosphatase From Escherichia Coli
Length = 175
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 76/130 (58%), Gaps = 3/130 (2%)
Query: 54 VDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGE 113
VDR + +++ YP NYG+I T+ D DP+DVLV P+ PGS RCR +G++ M D+
Sbjct: 41 VDRFMSTAMFYPCNYGYINHTLSLDGDPVDVLVPTPYPLQPGSVTRCRPVGVLKMTDEAG 100
Query: 114 KDDKIIAV--CADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNENKK-VDVEDFLPAEA 170
+D K++AV E+ H KD+ +LP A+I FFE YK E K V VE + AEA
Sbjct: 101 EDAKLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEGWENAEA 160
Query: 171 AIEAIKYSMD 180
A I S +
Sbjct: 161 AKAEIVASFE 170
>pdb|1MJZ|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D97n
Length = 175
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 77/130 (59%), Gaps = 3/130 (2%)
Query: 54 VDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGE 113
VDR + +++ YP NYG+I T+ D DP+DVLV P+ PGS +RCR +G++ M ++
Sbjct: 41 VDRFMSTAMFYPCNYGYINHTLSLDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTNEAG 100
Query: 114 KDDKIIAV--CADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNENKK-VDVEDFLPAEA 170
+D K++AV E+ H KD+ +LP A+I FFE YK E K V VE + AEA
Sbjct: 101 EDAKLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEGWENAEA 160
Query: 171 AIEAIKYSMD 180
A I S +
Sbjct: 161 AKAEIVASFE 170
>pdb|1MJW|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D42n
pdb|1MJW|B Chain B, Structure Of Inorganic Pyrophosphatase Mutant D42n
Length = 175
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 77/130 (59%), Gaps = 3/130 (2%)
Query: 54 VDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGE 113
V+R + +++ YP NYG+I T+ D DP+DVLV P+ PGS +RCR +G++ M D+
Sbjct: 41 VNRFMSTAMFYPCNYGYINHTLSLDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAG 100
Query: 114 KDDKIIAV--CADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNENKK-VDVEDFLPAEA 170
+D K++AV E+ H KD+ +LP A+I FFE YK E K V VE + AEA
Sbjct: 101 EDAKLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEGWENAEA 160
Query: 171 AIEAIKYSMD 180
A I S +
Sbjct: 161 AKAEIVASFE 170
>pdb|1MJX|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D65n
pdb|1MJX|B Chain B, Structure Of Inorganic Pyrophosphatase Mutant D65n
Length = 175
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 77/130 (59%), Gaps = 3/130 (2%)
Query: 54 VDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGE 113
VDR + +++ YP NYG+I T+ + DP+DVLV P+ PGS +RCR +G++ M D+
Sbjct: 41 VDRFMSTAMFYPCNYGYINHTLSLNGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAG 100
Query: 114 KDDKIIAV--CADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNENKK-VDVEDFLPAEA 170
+D K++AV E+ H KD+ +LP A+I FFE YK E K V VE + AEA
Sbjct: 101 EDAKLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEGWENAEA 160
Query: 171 AIEAIKYSMD 180
A I S +
Sbjct: 161 AKAEIVASFE 170
>pdb|1MJY|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D70n
pdb|1MJY|B Chain B, Structure Of Inorganic Pyrophosphatase Mutant D70n
Length = 175
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 76/130 (58%), Gaps = 3/130 (2%)
Query: 54 VDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGE 113
VDR + +++ YP NYG+I T+ D DP++VLV P+ PGS RCR +G++ M D+
Sbjct: 41 VDRFMSTAMFYPCNYGYINHTLSLDGDPVNVLVPTPYPLQPGSVTRCRPVGVLKMTDEAG 100
Query: 114 KDDKIIAV--CADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNENKK-VDVEDFLPAEA 170
+D K++AV E+ H KD+ +LP A+I FFE YK E K V VE + AEA
Sbjct: 101 EDAKLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEGWENAEA 160
Query: 171 AIEAIKYSMD 180
A I S +
Sbjct: 161 AKAEIVASFE 170
>pdb|2AU7|A Chain A, The R43q Active Site Variant Of E.Coli Inorganic
Pyrophosphatase
Length = 175
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 76/130 (58%), Gaps = 3/130 (2%)
Query: 54 VDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGE 113
VD+ + +++ YP NYG+I T+ D DP+DVLV P+ PGS RCR +G++ M D+
Sbjct: 41 VDQFMSTAMFYPCNYGYINHTLSLDGDPVDVLVPTPYPLQPGSVTRCRPVGVLKMTDEAG 100
Query: 114 KDDKIIAV--CADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNENKK-VDVEDFLPAEA 170
+D K++AV E+ H KD+ +LP A+I FFE YK E K V VE + AEA
Sbjct: 101 EDAKLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEGWENAEA 160
Query: 171 AIEAIKYSMD 180
A I S +
Sbjct: 161 AKAEIVASFE 170
>pdb|4ECP|A Chain A, X-Ray Crystal Structure Of Inorganic Pyrophosphate Ppa
From Mycobacterium Leprae
pdb|4ECP|B Chain B, X-Ray Crystal Structure Of Inorganic Pyrophosphate Ppa
From Mycobacterium Leprae
Length = 167
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 76/132 (57%), Gaps = 1/132 (0%)
Query: 54 VDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGE 113
+DR LY+ + YP +YGFI T+ ED DP+D LVL+ EP+ PG + R +G+ M+D+
Sbjct: 33 LDRYLYTPMAYPTDYGFIEDTLGEDGDPLDALVLLPEPLFPGVLVEARPVGMFRMVDEHG 92
Query: 114 KDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAEAAI 172
DDK++ V +D + H I ++P L I+ FF YK E K V D++ + A
Sbjct: 93 GDDKVLCVPVNDHRWDHIHGIIDVPTFELDAIKHFFVHYKDLEPGKFVKAADWVGRDEAE 152
Query: 173 EAIKYSMDLYAS 184
++ S++ + +
Sbjct: 153 AEVQRSVERFKA 164
>pdb|3D63|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei
pdb|3D63|B Chain B, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei
pdb|3D63|C Chain C, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei
pdb|3EIY|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei With Bound Pyrophosphate
pdb|3EIZ|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei, H32 Crystal Form
pdb|3EJ0|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei With Bound
N-(Pyridin-3-Ylmethyl) Aniline, H32 Crystal Form
pdb|3EJ2|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei With Bound 5-Amino-1-(4-
Chlorophenyl)-1h-Pyrazole-4-Carbonitrile, H32 Crystal
Form
pdb|3GVF|A Chain A, 1.7 Angstrom Crystal Structure Of Inorganic
Pyrophosphatase From Burkholderia Pseudomallei Bound
With Phosphate
Length = 196
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 74/122 (60%), Gaps = 3/122 (2%)
Query: 53 CVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQG 112
VDR + + + YP NYGFIP+T+ D DP+DVLV+ P+L GS +R RA+G++ M D+
Sbjct: 62 VVDRFIGTGMRYPVNYGFIPQTLSGDGDPVDVLVITPFPLLAGSVVRARALGMLKMTDES 121
Query: 113 EKDDKIIAVCADD--PEFRHYKDIKELPPHRLAEIRRFFEDYKKNENKK-VDVEDFLPAE 169
D K++AV D P + K I ++P + +I+ FFE YK E K V VE + +
Sbjct: 122 GVDAKLVAVPHDKVCPMTANLKSIDDVPAYLKDQIKHFFEQYKALEKGKWVKVEGWDGID 181
Query: 170 AA 171
AA
Sbjct: 182 AA 183
>pdb|3FQ3|A Chain A, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|B Chain B, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|C Chain C, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|D Chain D, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|E Chain E, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|F Chain F, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|G Chain G, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|H Chain H, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|I Chain I, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|J Chain J, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|K Chain K, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|L Chain L, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
Length = 197
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 69/115 (60%), Gaps = 3/115 (2%)
Query: 54 VDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGE 113
VDR LY+ + YP NYGF+P T+ ED DP+DVLV P++PG + R IG++ M D
Sbjct: 63 VDRFLYTPMTYPGNYGFVPHTLSEDGDPIDVLVCNTRPLIPGCVINVRPIGVLVMEDNSG 122
Query: 114 KDDKIIAVCADDPEFRHYK--DIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDF 165
KD+KIIAV + R+ K D ++P L +I FFE YK E K V + D+
Sbjct: 123 KDEKIIAVPSPHLTRRYEKIHDYTDMPEITLKQIAHFFEHYKDLEPGKWVKIGDW 177
>pdb|3LO0|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Ehrlichia Chaffeensis
Length = 193
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 72/126 (57%), Gaps = 3/126 (2%)
Query: 53 CVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQG 112
CVDR L +S+ YP NYGFIP T D DP+DVLV + PV+ G+ +R R +G++ M D+
Sbjct: 62 CVDRFLPTSMYYPCNYGFIPHTCAGDGDPVDVLVASRFPVMSGAVIRARPVGVLVMHDES 121
Query: 113 EKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKK-NENKKVDVEDFLPAE 169
+D KI+AV D + + KD + P L I FF YKK E+K V VE +
Sbjct: 122 GEDVKILAVPTHKVDQYYNNIKDYSDFPVSFLNSISHFFTFYKKLEEDKFVSVEGWKDVT 181
Query: 170 AAIEAI 175
A + I
Sbjct: 182 VAEKLI 187
>pdb|3LD3|A Chain A, Crystal Structure Of Inorganic Phosphatase From Anaplasma
Phagocytophilum At 1.75a Resolution
pdb|3LD3|B Chain B, Crystal Structure Of Inorganic Phosphatase From Anaplasma
Phagocytophilum At 1.75a Resolution
Length = 199
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 77/129 (59%), Gaps = 3/129 (2%)
Query: 54 VDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGE 113
VDR L +++ YP NYGFIP TI D DP+DVLVL + PV+PG+ + R +G++ M D+
Sbjct: 63 VDRFLPTAMYYPCNYGFIPNTIAGDGDPVDVLVLARFPVMPGAVICVRPVGVLMMNDEKG 122
Query: 114 KDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNENKK-VDVEDFLPAEA 170
+D K++AV A D + + + +LP L I FF YKK E K V V + A +
Sbjct: 123 EDAKVLAVPATKVDQYYGNIVNYSDLPSSFLDSISHFFSFYKKLEKDKFVSVGCWQDAAS 182
Query: 171 AIEAIKYSM 179
A E I+ ++
Sbjct: 183 AKELIRSAI 191
>pdb|3TR4|A Chain A, Structure Of An Inorganic Pyrophosphatase (Ppa) From
Coxiella Burnetii
pdb|3TR4|B Chain B, Structure Of An Inorganic Pyrophosphatase (Ppa) From
Coxiella Burnetii
pdb|3TR4|C Chain C, Structure Of An Inorganic Pyrophosphatase (Ppa) From
Coxiella Burnetii
pdb|3TR4|D Chain D, Structure Of An Inorganic Pyrophosphatase (Ppa) From
Coxiella Burnetii
pdb|3TR4|E Chain E, Structure Of An Inorganic Pyrophosphatase (Ppa) From
Coxiella Burnetii
pdb|3TR4|F Chain F, Structure Of An Inorganic Pyrophosphatase (Ppa) From
Coxiella Burnetii
Length = 178
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 70/133 (52%), Gaps = 9/133 (6%)
Query: 53 CVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQG 112
VDR +S YP NYGF+P T+ +D DP+DVLVL PV PG R RA+G+ D+
Sbjct: 42 TVDRFXPTSXRYPCNYGFVPSTLAQDGDPLDVLVLTPVPVQPGVLXRVRALGIXKXEDEA 101
Query: 113 EKDDKIIAV-----CADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFL 166
+D K++AV C + KDI L L I FFE YK E NK V+ +
Sbjct: 102 GEDSKVLAVPVVKACRAYEAIQSLKDISSL---LLDAISHFFERYKDLEPNKWAKVKGWE 158
Query: 167 PAEAAIEAIKYSM 179
EAA + + S+
Sbjct: 159 DKEAAKKEFEASI 171
>pdb|3I4Q|A Chain A, Structure Of A Putative Inorganic Pyrophosphatase From The
Oil- Degrading Bacterium Oleispira Antarctica
Length = 176
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 53 CVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQG 112
VDR + YP NYG+I T+ +D D +DVLV+ PV PGS +R R +G++ D+
Sbjct: 42 LVDRFXATPXFYPANYGYINNTLADDGDALDVLVITPYPVAPGSVIRARPVGVLKXSDEA 101
Query: 113 EKDDKIIAVCADDPE--FRHYKDIKELPPHRLAEIRRFFEDYKKNENKK-VDVEDFLPAE 169
D+K++AV + + DI ++P +I FFE YK E K V VE + A+
Sbjct: 102 GGDEKLLAVPHEKLTQLYNDIHDIDDVPQLLKDQIVHFFEHYKDLEKGKWVKVEGWENAD 161
Query: 170 AAIEAIKYSMDLY 182
AA AI S Y
Sbjct: 162 AARAAIVKSAAAY 174
>pdb|2IK0|A Chain A, Yeast Inorganic Pyrophosphatase Variant E48d With
Magnesium And Phosphate
pdb|2IK0|B Chain B, Yeast Inorganic Pyrophosphatase Variant E48d With
Magnesium And Phosphate
Length = 286
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 19/142 (13%)
Query: 64 YPHNYGFIPRTICE------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQ 111
Y HNYG P+T + D+DP+DVL + + G + +A+G+M ++D+
Sbjct: 89 YIHNYGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDE 148
Query: 112 GEKDDKIIAVCADD---PEFRHYKDIKELPPHRLAEIRRFFEDYK----KNENKKVDVED 164
GE D K+IA+ +D P+ +D+++ P L +F YK K EN+ +
Sbjct: 149 GETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGE 208
Query: 165 FLPAEAAIEAIKYSMDLYASYI 186
+ A++ IK + D + I
Sbjct: 209 AKNKKYALDIIKETHDSWKQLI 230
>pdb|1YPP|A Chain A, Acid Anhydride Hydrolase
pdb|1YPP|B Chain B, Acid Anhydride Hydrolase
Length = 286
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 19/142 (13%)
Query: 64 YPHNYGFIPRTICE------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQ 111
Y HNYG P+T + D+DP+DVL + + G + +A+G+M ++D+
Sbjct: 89 YIHNYGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDE 148
Query: 112 GEKDDKIIAVCADD---PEFRHYKDIKELPPHRLAEIRRFFEDYK----KNENKKVDVED 164
GE D K+IA+ +D P+ +D+++ P L +F YK K EN+ +
Sbjct: 149 GETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGE 208
Query: 165 FLPAEAAIEAIKYSMDLYASYI 186
+ A++ IK + D + I
Sbjct: 209 AKNKKYALDIIKETHDSWKQLI 230
>pdb|1WGI|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1WGI|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1WGJ|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1WGJ|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1E6A|A Chain A, Fluoride-Inhibited Substrate Complex Of Saccharomyces
Cerevisiae Inorganic Pyrophosphatase
pdb|1E6A|B Chain B, Fluoride-Inhibited Substrate Complex Of Saccharomyces
Cerevisiae Inorganic Pyrophosphatase
pdb|2IHP|A Chain A, Yeast Inorganic Pyrophosphatase With Magnesium And
Phosphate
pdb|2IHP|B Chain B, Yeast Inorganic Pyrophosphatase With Magnesium And
Phosphate
pdb|1E9G|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1E9G|B Chain B, Structure Of Inorganic Pyrophosphatase
Length = 286
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 19/142 (13%)
Query: 64 YPHNYGFIPRTICE------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQ 111
Y HNYG P+T + D+DP+DVL + + G + +A+G+M ++D+
Sbjct: 89 YIHNYGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDE 148
Query: 112 GEKDDKIIAVCADD---PEFRHYKDIKELPPHRLAEIRRFFEDYK----KNENKKVDVED 164
GE D K+IA+ +D P+ +D+++ P L +F YK K EN+ +
Sbjct: 149 GETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGE 208
Query: 165 FLPAEAAIEAIKYSMDLYASYI 186
+ A++ IK + D + I
Sbjct: 209 AKNKKYALDIIKETHDSWKQLI 230
>pdb|8PRK|A Chain A, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
pdb|8PRK|B Chain B, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
Length = 287
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 19/142 (13%)
Query: 64 YPHNYGFIPRTICE------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQ 111
Y HNYG P+T + D+DP+DVL + + G + +A+G+M ++D+
Sbjct: 90 YIHNYGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDE 149
Query: 112 GEKDDKIIAVCADD---PEFRHYKDIKELPPHRLAEIRRFFEDYK----KNENKKVDVED 164
GE D K+IA+ +D P+ +D+++ P L +F YK K EN+ +
Sbjct: 150 GETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGE 209
Query: 165 FLPAEAAIEAIKYSMDLYASYI 186
+ A++ IK + D + I
Sbjct: 210 AKNKKYALDIIKETHDSWKQLI 231
>pdb|1M38|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1M38|B Chain B, Structure Of Inorganic Pyrophosphatase
Length = 287
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 19/142 (13%)
Query: 64 YPHNYGFIPRTICE------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQ 111
Y HNYG P+T + D+DP+DVL + + G + +A+G+M ++D+
Sbjct: 90 YIHNYGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDE 149
Query: 112 GEKDDKIIAVCADD---PEFRHYKDIKELPPHRLAEIRRFFEDYK----KNENKKVDVED 164
GE D K+IA+ +D P+ +D+++ P L +F YK K EN+ +
Sbjct: 150 GETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGE 209
Query: 165 FLPAEAAIEAIKYSMDLYASYI 186
+ A++ IK + D + I
Sbjct: 210 AKNKKYALDIIKETHDSWKQLI 231
>pdb|1HUK|A Chain A, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
pdb|1HUK|B Chain B, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
Length = 281
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 19/142 (13%)
Query: 64 YPHNYGFIPRTICE------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQ 111
Y HNYG P+T + D+DP+DVL + + G + +A+G+M ++D+
Sbjct: 89 YIHNYGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDE 148
Query: 112 GEKDDKIIAVCADD---PEFRHYKDIKELPPHRLAEIRRFFEDYK----KNENKKVDVED 164
GE D K+IA+ +D P+ +D+++ P L +F YK K EN+ +
Sbjct: 149 GETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGE 208
Query: 165 FLPAEAAIEAIKYSMDLYASYI 186
+ A++ IK + D + I
Sbjct: 209 AKNKKYALDIIKETHDSWKQLI 230
>pdb|1HUJ|A Chain A, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
pdb|1HUJ|B Chain B, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
Length = 281
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 19/142 (13%)
Query: 64 YPHNYGFIPRTICE------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQ 111
Y HNYG P+T + D+DP+DVL + + G + +A+G+M ++D+
Sbjct: 89 YIHNYGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDE 148
Query: 112 GEKDDKIIAVCADD---PEFRHYKDIKELPPHRLAEIRRFFEDYK----KNENKKVDVED 164
GE D K+IA+ +D P+ +D+++ P L +F YK K EN+ +
Sbjct: 149 GETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGE 208
Query: 165 FLPAEAAIEAIKYSMDLYASYI 186
+ A++ IK + D + I
Sbjct: 209 AKNKKYALDIIKETHDSWKQLI 230
>pdb|2IK1|A Chain A, Yeast Inorganic Pyrophosphatase Variant Y93f With
Magnesium And Phosphate
pdb|2IK1|B Chain B, Yeast Inorganic Pyrophosphatase Variant Y93f With
Magnesium And Phosphate
Length = 286
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 19/142 (13%)
Query: 64 YPHNYGFIPRTICE------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQ 111
Y HN+G P+T + D+DP+DVL + + G + +A+G+M ++D+
Sbjct: 89 YIHNFGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDE 148
Query: 112 GEKDDKIIAVCADD---PEFRHYKDIKELPPHRLAEIRRFFEDYK----KNENKKVDVED 164
GE D K+IA+ +D P+ +D+++ P L +F YK K EN+ +
Sbjct: 149 GETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGE 208
Query: 165 FLPAEAAIEAIKYSMDLYASYI 186
+ A++ IK + D + I
Sbjct: 209 AKNKKYALDIIKETHDSWKQLI 230
>pdb|2IK7|A Chain A, Yeast Inorganic Pyrophosphatase Variant D120n With
Magnesium And Phosphate
pdb|2IK7|B Chain B, Yeast Inorganic Pyrophosphatase Variant D120n With
Magnesium And Phosphate
Length = 286
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 19/142 (13%)
Query: 64 YPHNYGFIPRTICE------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQ 111
Y HNYG P+T + D+DP++VL + + G + +A+G+M ++D+
Sbjct: 89 YIHNYGAFPQTWEDPNVSHPETKAVGDNDPINVLEIGETIAYTGQVKQVKALGIMALLDE 148
Query: 112 GEKDDKIIAVCADD---PEFRHYKDIKELPPHRLAEIRRFFEDYK----KNENKKVDVED 164
GE D K+IA+ +D P+ +D+++ P L +F YK K EN+ +
Sbjct: 149 GETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGE 208
Query: 165 FLPAEAAIEAIKYSMDLYASYI 186
+ A++ IK + D + I
Sbjct: 209 AKNKKYALDIIKETHDSWKQLI 230
>pdb|117E|A Chain A, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
pdb|117E|B Chain B, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
pdb|2IK4|A Chain A, Yeast Inorganic Pyrophosphatase Variant D117e With
Magnesium And Phosphate
pdb|2IK4|B Chain B, Yeast Inorganic Pyrophosphatase Variant D117e With
Magnesium And Phosphate
Length = 286
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 19/142 (13%)
Query: 64 YPHNYGFIPRTICE------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQ 111
Y HNYG P+T + D++P+DVL + + G + +A+G+M ++D+
Sbjct: 89 YIHNYGAFPQTWEDPNVSHPETKAVGDNEPIDVLEIGETIAYTGQVKQVKALGIMALLDE 148
Query: 112 GEKDDKIIAVCADD---PEFRHYKDIKELPPHRLAEIRRFFEDYK----KNENKKVDVED 164
GE D K+IA+ +D P+ +D+++ P L +F YK K EN+ +
Sbjct: 149 GETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGE 208
Query: 165 FLPAEAAIEAIKYSMDLYASYI 186
+ A++ IK + D + I
Sbjct: 209 AKNKKYALDIIKETHDSWKQLI 230
>pdb|2IK6|A Chain A, Yeast Inorganic Pyrophosphatase Variant D120e With
Magnesium And Phosphate
pdb|2IK6|B Chain B, Yeast Inorganic Pyrophosphatase Variant D120e With
Magnesium And Phosphate
Length = 286
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 19/142 (13%)
Query: 64 YPHNYGFIPRTICE------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQ 111
Y HNYG P+T + D+DP++VL + + G + +A+G+M ++D+
Sbjct: 89 YIHNYGAFPQTWEDPNVSHPETKAVGDNDPIEVLEIGETIAYTGQVKQVKALGIMALLDE 148
Query: 112 GEKDDKIIAVCADD---PEFRHYKDIKELPPHRLAEIRRFFEDYK----KNENKKVDVED 164
GE D K+IA+ +D P+ +D+++ P L +F YK K EN+ +
Sbjct: 149 GETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGE 208
Query: 165 FLPAEAAIEAIKYSMDLYASYI 186
+ A++ IK + D + I
Sbjct: 209 AKNKKYALDIIKETHDSWKQLI 230
>pdb|2IK9|A Chain A, Yeast Inorganic Pyrophosphatase Variant D152e With
Magnesium And Phosphate
pdb|2IK9|B Chain B, Yeast Inorganic Pyrophosphatase Variant D152e With
Magnesium And Phosphate
Length = 286
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 19/142 (13%)
Query: 64 YPHNYGFIPRTICE------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQ 111
Y HNYG P+T + D+DP+DVL + + G + +A+G+M ++D+
Sbjct: 89 YIHNYGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDE 148
Query: 112 GEKDDKIIAVCADD---PEFRHYKDIKELPPHRLAEIRRFFEDYK----KNENKKVDVED 164
GE + K+IA+ +D P+ +D+++ P L +F YK K EN+ +
Sbjct: 149 GETEWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGE 208
Query: 165 FLPAEAAIEAIKYSMDLYASYI 186
+ A++ IK + D + I
Sbjct: 209 AKNKKYALDIIKETHDSWKQLI 230
>pdb|2IK2|A Chain A, Yeast Inorganic Pyrophosphatase Variant D115e With
Magnesium And Phosphate
pdb|2IK2|B Chain B, Yeast Inorganic Pyrophosphatase Variant D115e With
Magnesium And Phosphate
Length = 286
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 19/142 (13%)
Query: 64 YPHNYGFIPRTICE------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQ 111
Y HNYG P+T + ++DP+DVL + + G + +A+G+M ++D+
Sbjct: 89 YIHNYGAFPQTWEDPNVSHPETKAVGENDPIDVLEIGETIAYTGQVKQVKALGIMALLDE 148
Query: 112 GEKDDKIIAVCADD---PEFRHYKDIKELPPHRLAEIRRFFEDYK----KNENKKVDVED 164
GE D K+IA+ +D P+ +D+++ P L +F YK K EN+ +
Sbjct: 149 GETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGE 208
Query: 165 FLPAEAAIEAIKYSMDLYASYI 186
+ A++ IK + D + I
Sbjct: 209 AKNKKYALDIIKETHDSWKQLI 230
>pdb|1PYP|A Chain A, X-Ray Diffraction Study Of Inorganic Pyrophosphatase From
Baker,S Yeast At The 3 Angstroms Resolution (Russian)
pdb|1PYP|B Chain B, X-Ray Diffraction Study Of Inorganic Pyrophosphatase From
Baker,S Yeast At The 3 Angstroms Resolution (Russian)
Length = 285
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 18/133 (13%)
Query: 64 YPHNYGFIPRTICE------------DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQ 111
Y HNYG P+T + D++P+DVL + + G +A+G+M ++D+
Sbjct: 88 YIHNYGAFPQTWEDPNVSHPETKAVGDNNPIDVLQIGETIAYTGQVKEVKALGIMALLDE 147
Query: 112 GEKDDKIIAVCADD---PEFRHYKDIKELPPHRLAEIRRFFEDYKKNENKKVDVEDFLPA 168
GE D K+IA+ +D P+ +D+++ P L +F YK + K E+
Sbjct: 148 GETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATDEWFRIYKIPDGKP---ENQFAF 204
Query: 169 EAAIEAIKYSMDL 181
+ KY++D+
Sbjct: 205 SGEAKNKKYALDI 217
>pdb|2E6W|A Chain A, Solution Structure And Calcium Binding Properties Of Ef-
Hands 3 And 4 Of Calsenilin
Length = 100
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 145 IRRFFEDYKKNENKKVDVEDFLPAEAAIEAIKYSMDLYASYI 186
+ RFFE +N++ V +E+FL A E I SM L+ + I
Sbjct: 59 VERFFEKMDRNQDGVVTIEEFLEACQKDENIMSSMQLFENVI 100
>pdb|2JUL|A Chain A, Nmr Structure Of Dream
Length = 256
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 129 RH-YKDIKELPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAAIEAIKYSMDLYASYI 186
RH Y ++E P L + RFF+ +N++ V +++FL E I SM L+ + I
Sbjct: 200 RHTYPILREDAP--LEHVERFFQKMDRNQDGVVTIDEFLETCQKDENIMNSMQLFENVI 256
>pdb|1CKV|A Chain A, Structure Of The Soluble Methane Monooxygenase Regulatory
Protein B
pdb|4GAM|D Chain D, Complex Structure Of Methane Monooxygenase Hydroxylase And
Regulatory Subunit
pdb|4GAM|I Chain I, Complex Structure Of Methane Monooxygenase Hydroxylase And
Regulatory Subunit
pdb|4GAM|N Chain N, Complex Structure Of Methane Monooxygenase Hydroxylase And
Regulatory Subunit
pdb|4GAM|S Chain S, Complex Structure Of Methane Monooxygenase Hydroxylase And
Regulatory Subunit
Length = 141
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Query: 123 ADDPEFRHYKDIKELPPHRLAEIRRFFE-----DYKKNENKKVDVED-----FLPAEAAI 172
AD+ + H D L + EI F E DYKKN N V+VED ++ A I
Sbjct: 26 ADENQVVHESDTVVLVLKKSDEINTFIEEILLTDYKKNVNPTVNVEDRAGYWWIKANGKI 85
Query: 173 EA 174
E
Sbjct: 86 EV 87
>pdb|4E8W|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8W|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Y|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Y|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Z|A Chain A, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
pdb|4E8Z|B Chain B, Crystal Structure Of Burkholderia Cenocepacia Hlda In
Complex With An Atp-Competitive Inhibitor
Length = 352
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 82 MDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHR 141
DVL+ + VL + + + MI++ K + V ++ Y+ + P+R
Sbjct: 180 FDVLLPQHDVVLMSDYAKGGLTHVTTMIEKARAAGKAVLVDPKGDDWARYRGASLITPNR 239
Query: 142 LAEIRRFFEDYKKNENKKVDVEDFLPAEAAIEAI 175
AE+R +K ++ + V + L AE I+A+
Sbjct: 240 -AELREVVGQWKSEDDLRARVAN-LRAELDIDAL 271
>pdb|1KFW|A Chain A, Structure Of Catalytic Domain Of Psychrophilic Chitinase B
From Arthrobacter Tad20
Length = 435
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 142 LAEIRRFFEDYKKNENKKVDVEDFLPAEAA 171
LAE R+ + Y NKK + FLPA A
Sbjct: 209 LAEFRKQLDAYGSTNNKKYVLSAFLPANPA 238
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,257,813
Number of Sequences: 62578
Number of extensions: 266533
Number of successful extensions: 743
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 658
Number of HSP's gapped (non-prelim): 56
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)