Query 029542
Match_columns 192
No_of_seqs 148 out of 1072
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 14:35:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029542.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029542hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02373 soluble inorganic pyr 100.0 3E-63 6.5E-68 414.1 19.4 164 28-191 2-187 (188)
2 PLN02707 Soluble inorganic pyr 100.0 3E-60 6.6E-65 413.5 17.9 176 13-190 36-259 (267)
3 PRK00642 inorganic pyrophospha 100.0 5.8E-60 1.3E-64 398.9 18.3 156 31-186 5-204 (205)
4 PRK01250 inorganic pyrophospha 100.0 1.1E-57 2.4E-62 377.4 17.0 149 36-184 1-175 (176)
5 PRK02230 inorganic pyrophospha 100.0 2.2E-53 4.8E-58 353.6 16.4 132 54-185 30-162 (184)
6 COG0221 Ppa Inorganic pyrophos 100.0 3.1E-53 6.7E-58 349.4 15.4 148 36-184 1-171 (171)
7 PF00719 Pyrophosphatase: Inor 100.0 1E-53 2.2E-58 347.6 12.1 136 49-184 20-156 (156)
8 cd00412 pyrophosphatase Inorga 100.0 6.8E-53 1.5E-57 342.7 14.7 127 54-180 28-155 (155)
9 KOG1626 Inorganic pyrophosphat 100.0 5.4E-53 1.2E-57 364.3 14.1 178 11-190 5-235 (279)
10 KOG1626 Inorganic pyrophosphat 51.3 8.9 0.00019 34.3 1.6 143 13-156 16-231 (279)
11 PF07177 Neuralized: Neuralize 43.4 25 0.00053 24.9 2.6 23 83-105 30-52 (69)
12 cd05694 S1_Rrp5_repeat_hs2_sc2 43.3 15 0.00032 25.9 1.4 28 68-105 30-57 (74)
13 cd01460 vWA_midasin VWA_Midasi 36.8 16 0.00035 32.4 0.9 27 126-152 237-263 (266)
14 smart00588 NEUZ domain in neur 35.9 47 0.001 25.9 3.4 46 78-127 26-71 (123)
15 PF13333 rve_2: Integrase core 31.1 40 0.00087 22.0 1.9 34 147-183 2-35 (52)
16 KOG1110 Putative steroid membr 30.0 31 0.00066 29.4 1.5 38 116-154 108-145 (183)
17 PLN02150 terpene synthase/cycl 29.2 87 0.0019 23.4 3.7 25 167-191 20-45 (96)
18 COG4447 Uncharacterized protei 25.3 84 0.0018 28.9 3.5 60 55-119 84-163 (339)
19 PF07469 DUF1518: Domain of un 24.7 41 0.00089 23.6 1.1 14 62-75 19-32 (58)
20 PF05182 Fip1: Fip1 motif; In 24.4 21 0.00046 23.7 -0.3 11 66-76 24-34 (45)
21 PF08437 Glyco_transf_8C: Glyc 22.9 42 0.00091 22.9 0.9 13 34-46 12-24 (57)
22 PF09476 Pilus_CpaD: Pilus bio 22.2 2.6E+02 0.0057 23.6 5.8 33 135-167 52-84 (203)
23 PF07065 D123: D123; InterPro 22.1 1.4E+02 0.0031 26.8 4.4 55 84-151 151-206 (299)
24 cd05706 S1_Rrp5_repeat_sc10 S1 20.9 80 0.0017 21.2 2.0 34 68-105 28-61 (73)
25 PTZ00162 DNA-directed RNA poly 20.5 1.9E+02 0.0042 23.9 4.5 59 65-129 103-169 (176)
26 COG2884 FtsE Predicted ATPase 20.3 21 0.00046 31.1 -1.2 49 139-191 75-123 (223)
27 smart00362 RRM_2 RNA recogniti 20.2 2.1E+02 0.0045 17.4 3.8 38 141-178 12-59 (72)
28 cd05695 S1_Rrp5_repeat_hs3 S1_ 20.2 74 0.0016 21.5 1.7 32 68-105 25-56 (66)
No 1
>PLN02373 soluble inorganic pyrophosphatase
Probab=100.00 E-value=3e-63 Score=414.14 Aligned_cols=164 Identities=91% Similarity=1.482 Sum_probs=159.3
Q ss_pred cCCCCcccccCCCCCCCCCCCCeEEEE----------------------eeeccccccccccCCCCCcccCCCCCcceeE
Q 029542 28 MSHRSVAAHPWHDLEIGPGAPAVCNCV----------------------DRVLYSSVVYPHNYGFIPRTICEDSDPMDVL 85 (192)
Q Consensus 28 ~~~~~~~~spwhdipl~~~~p~~vn~v----------------------DR~l~~~~~yP~NYGfIP~T~~~DgDPLDvl 85 (192)
|+++...+||||+||++++.|+.||+| ||++++++.||||||||||||++||||||||
T Consensus 2 ~~~~~~~~~~whdi~~~~~~~~~v~vVIEIP~gs~~KyE~dk~~g~i~~Dr~l~~~~~yP~nYGfIP~T~~~DgDPLDvl 81 (188)
T PLN02373 2 MSRRSVAAHPWHDLEIGPGAPAIFNCVVEITKGSKVKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVL 81 (188)
T ss_pred cccccccCCccccCCCCCCCCCEEEEEEEECCCCCeeEEEccCCCCEEEeeecccCCcCCcccccccccccCCCCccEEE
Confidence 677788999999999999999999999 8999999999999999999999999999999
Q ss_pred EecCccCCCeeEEEEEEeEEEEeeeCCCCCceEEEEecCCCCcCCCCCCCCCChhHHHHHHHHHHHhhcCCCceeEeccc
Q 029542 86 VLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNENKKVDVEDF 165 (192)
Q Consensus 86 vl~~~p~~~G~v~~vrviGvl~miD~ge~D~KiIaV~~~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~legK~v~~~~~ 165 (192)
||++.|+.||++++|||||+|+|+|+||.|||||||+++||+|++|+|++|||++++++|+|||++||.+|||++++++|
T Consensus 82 vl~~~~~~~G~vi~~R~iG~l~m~D~ge~D~KiIaV~~~dp~~~~i~dl~Dl~~~~l~~I~~fF~~YK~legK~v~v~g~ 161 (188)
T PLN02373 82 VLMQEPVLPGCFLRARAIGLMPMIDQGEKDDKIIAVCADDPEYRHYTDIKELPPHRLAEIRRFFEDYKKNENKEVAVNDF 161 (188)
T ss_pred EecCCCCCCceEEEEEEEEEEEEeeCCCCCCeEEEEECCCcccccCCChHHCCHHHHHHHHHHHHHhcccCCCeEEeCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhc
Q 029542 166 LPAEAAIEAIKYSMDLYASYIVESLR 191 (192)
Q Consensus 166 ~~~~~A~~vI~~~~~~y~~~~~~~~~ 191 (192)
.|+++|+++|++|+++|++++.+.++
T Consensus 162 ~~~~~A~~~I~~~~~~y~~~~~~~~~ 187 (188)
T PLN02373 162 LPAEAAIEAIQYSMDLYAEYIVESLR 187 (188)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999887664
No 2
>PLN02707 Soluble inorganic pyrophosphatase
Probab=100.00 E-value=3e-60 Score=413.50 Aligned_cols=176 Identities=29% Similarity=0.525 Sum_probs=161.1
Q ss_pred CCCCCCCCcchhhcccCCCCcccccCCCCCCCCCCCCeEEEE------------------------eeeccccccccc--
Q 029542 13 SGGPPVALNERILSSMSHRSVAAHPWHDLEIGPGAPAVCNCV------------------------DRVLYSSVVYPH-- 66 (192)
Q Consensus 13 ~~~~~~~~~~r~~~~~~~~~~~~spwhdipl~~~~p~~vn~v------------------------DR~l~~~~~yP~-- 66 (192)
++|+++|++||+++ .+..+..+|||||||++ ..+++|||| ||.++..+.||+
T Consensus 36 ~~G~~~t~~~r~~~-~~~~g~~~spwHdIpl~-~~~~~vn~VVEIPrgs~~KyEidk~~~~npi~qD~~~g~lr~yP~~~ 113 (267)
T PLN02707 36 EEGEAETLDYRVFF-SDGSGKKVSPWHDIPLH-AGDGTFNFVVEIPKETSAKMEVATDEPFTPIKQDTKKGKLRDYPYNI 113 (267)
T ss_pred eecCCCCcceEEEE-ECCCCCccCchhcCCCC-CCCCEEEEEEEECCCCceeEEECccCCCCCEEEeeecCceEECCCcC
Confidence 89999999999984 23467789999999999 558999999 577777777776
Q ss_pred --cCCCCCccc-------------CCCCCcceeEEecCccCCCeeEEEEEEeEEEEeeeCCCCCceEEEEecCCCCcCCC
Q 029542 67 --NYGFIPRTI-------------CEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHY 131 (192)
Q Consensus 67 --NYGfIP~T~-------------~~DgDPLDvlvl~~~p~~~G~v~~vrviGvl~miD~ge~D~KiIaV~~~dp~~~~i 131 (192)
||||||||| +|||||||||||++.++.||++++|||||+|+|+|+||+|||||||+++||+|++|
T Consensus 114 ~~NYGfIPqTwedp~~~~~~~~~l~gDgDPLDVlvi~~~~~~pG~Vv~vR~IGvL~miDeGE~D~KIIaV~~~Dp~~~~i 193 (267)
T PLN02707 114 NWNYGLLPQTWEDPTHANPEVEGAFGDNDPVDVVEIGERAAKIGEVLKVKPLGVLAMIDEGELDWKVVAISADDPKASLV 193 (267)
T ss_pred ccccccccccccCcccccccccccCCCCCccEEEEecCCCcCCccEEEEEEeEEEEEEeCCCCCCEEEEEECCCCccccc
Confidence 999999997 58999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhH---HHHHHHHHHHhhcCCCceeEe----ccccCHHHHHHHHHHHHHHHHHHHHHHh
Q 029542 132 KDIKELPPHR---LAEIRRFFEDYKKNENKKVDV----EDFLPAEAAIEAIKYSMDLYASYIVESL 190 (192)
Q Consensus 132 ~di~Dl~~~~---l~~i~~fF~~YK~legK~v~~----~~~~~~~~A~~vI~~~~~~y~~~~~~~~ 190 (192)
+|++||+++. +++|+|||++||.++||++++ ++|.|+++|+++|++||++|++++.++.
T Consensus 194 ~di~Dv~~~~pg~l~~I~~fF~~YK~~eGK~~n~~~~~~~~~~~~~A~~vI~e~~~~y~~l~~~~~ 259 (267)
T PLN02707 194 NDVDDVEKHFPGTLTAIRDWFRDYKIPDGKPANKFGLDNKPMDKDYALKVIEETNEAWAKLVKRSI 259 (267)
T ss_pred CChhHhhhhhhhHHHHHHHHHHHhcCCCCCceeeccccCCcCCHHHHHHHHHHHHHHHHHHhccCC
Confidence 9999998654 899999999999999999876 5799999999999999999999987554
No 3
>PRK00642 inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=5.8e-60 Score=398.93 Aligned_cols=156 Identities=41% Similarity=0.683 Sum_probs=148.5
Q ss_pred CCcccccCCCCCCCCCCCCeEEEE----------------------eeeccccccccccCCCCCcccC------------
Q 029542 31 RSVAAHPWHDLEIGPGAPAVCNCV----------------------DRVLYSSVVYPHNYGFIPRTIC------------ 76 (192)
Q Consensus 31 ~~~~~spwhdipl~~~~p~~vn~v----------------------DR~l~~~~~yP~NYGfIP~T~~------------ 76 (192)
....+|||||||++++.|++||+| ||+|++++.||+|||||||||+
T Consensus 5 ~~~~~spwhdi~~~~~~~~~vn~VIEIP~gs~~KyE~dk~~g~~~ldr~l~~~~~yP~nYGfIPqT~~dp~~~~~~~~~~ 84 (205)
T PRK00642 5 PLSRAHPWHGLSLGPDAPESVCCYIEITPFDTVKYELDKATGYLKVDRPQKFSNFCPALYGFIPRTYCGDLSGKLSGEQS 84 (205)
T ss_pred cccccCccccCCCCCCCCCEEEEEEEECCCCCeeEEEecCCCceEEeeecccCCcCCcccCcCcccccCccccccccccc
Confidence 456789999999999999999999 8999999999999999999995
Q ss_pred ------CCCCcceeEEecCccCCCeeE-EEEEEeEEEEeeeCCCCCceEEEEecCCCCcCCCCCCCCCChhHHHHHHHHH
Q 029542 77 ------EDSDPMDVLVLMQEPVLPGSF-LRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFF 149 (192)
Q Consensus 77 ------~DgDPLDvlvl~~~p~~~G~v-~~vrviGvl~miD~ge~D~KiIaV~~~dp~~~~i~di~Dl~~~~l~~i~~fF 149 (192)
|||||||||||++.|++||++ ++|||||+|+|+|+||+|||||||+++||+|++|+|++||+++++++|+|||
T Consensus 85 ~~~~~~gDgDPLDvlvl~~~~~~~G~v~i~~R~iG~l~miD~ge~D~KIiaV~~~Dp~~~~i~dl~Dl~~~~l~~I~~fF 164 (205)
T PRK00642 85 GREDIKGDGDPLDICVLTEKNITHGNILLQARPIGGLRMIDGGEADDKIIAVLEDDLVYGEIKDISECPGTLLDRLQHYF 164 (205)
T ss_pred ccccCCCCCCceEEEEecCCCcCCCceEEEEEEeEEEEEecCCCccceEEEEECCCCccccCCChHHCCHHHHHHHHHHH
Confidence 799999999999999999985 7999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCC---ceeEeccccCHHHHHHHHHHHHHHHHHHH
Q 029542 150 EDYKKNEN---KKVDVEDFLPAEAAIEAIKYSMDLYASYI 186 (192)
Q Consensus 150 ~~YK~leg---K~v~~~~~~~~~~A~~vI~~~~~~y~~~~ 186 (192)
++||.++| |++.++||.++++|+++|++||++|++++
T Consensus 165 ~~YK~legk~~k~~~~~g~~~~~~A~~vI~~~~~~y~~~~ 204 (205)
T PRK00642 165 LTYKATPGELIKGVEIVGIYGKEEAQKVIQLAHEDYANKF 204 (205)
T ss_pred HHHcCcccCCCCeEEECCCcCHHHHHHHHHHHHHHHHHhh
Confidence 99999996 44889999999999999999999999864
No 4
>PRK01250 inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=1.1e-57 Score=377.40 Aligned_cols=149 Identities=42% Similarity=0.727 Sum_probs=144.2
Q ss_pred ccCCCCCCCCCCCCeEEEE-----------------------eeeccccccccccCCCCCcccCCCCCcceeEEecCccC
Q 029542 36 HPWHDLEIGPGAPAVCNCV-----------------------DRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPV 92 (192)
Q Consensus 36 spwhdipl~~~~p~~vn~v-----------------------DR~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~p~ 92 (192)
+.||++|.+++.|+.||+| ||+|++++.||||||||||||++||||||||||++.|+
T Consensus 1 ~~~~~l~~~~~~~~~v~vvvEIPkgs~~~KyE~d~~~g~~~~dR~l~~~~~yP~nYGfIP~T~~~DgDPLDvlvl~~~~~ 80 (176)
T PRK01250 1 MSLNKIPAGKDLPEDINVIIEIPANSDPIKYEVDKESGALFVDRFLYTAMFYPCNYGFIPHTLSLDGDPVDVLVVTPYPL 80 (176)
T ss_pred CChhhCCCCCCCCCEEEEEEEeCCCCCceeEEEecCCCCEEEeeccCCCCcCCcCcccCCCcccCCCCceEEEEecCCCC
Confidence 3689999998889999998 79999999999999999999999999999999999999
Q ss_pred CCeeEEEEEEeEEEEeeeCCCCCceEEEEecC--CCCcCCCCCCCCCChhHHHHHHHHHHHhhcCC-CceeEeccccCHH
Q 029542 93 LPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAE 169 (192)
Q Consensus 93 ~~G~v~~vrviGvl~miD~ge~D~KiIaV~~~--dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le-gK~v~~~~~~~~~ 169 (192)
.||++++|||||+|+|+|+||.|||||||+++ ||+|++|+|++|||++++++|+|||++||.++ ||++++.+|.+++
T Consensus 81 ~~G~vv~~r~iG~l~m~D~ge~D~KiiaV~~~~~dp~~~~i~dl~dl~~~~l~eI~~fF~~YK~le~gk~~~v~g~~~~~ 160 (176)
T PRK01250 81 VPGSVIRCRPVGVLKMEDESGEDAKIIAVPHDKLSPEYDHIKDVNDLPELLKAQIKHFFEHYKDLEKGKWVKVEGWGGAE 160 (176)
T ss_pred CCceEEEEEEEEEEEeecCCCCCCeEEEEECCCCCccccccCChHHCCHHHHHHHHHHHHHhcCCCCCCCEEecCccCHH
Confidence 99999999999999999999999999999998 69999999999999999999999999999998 9999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 029542 170 AAIEAIKYSMDLYAS 184 (192)
Q Consensus 170 ~A~~vI~~~~~~y~~ 184 (192)
+|+++|++|+++|++
T Consensus 161 ~A~~~I~~~~~~y~~ 175 (176)
T PRK01250 161 EAKAEIVEAIERAKK 175 (176)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999975
No 5
>PRK02230 inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=2.2e-53 Score=353.63 Aligned_cols=132 Identities=43% Similarity=0.717 Sum_probs=128.8
Q ss_pred EeeeccccccccccCCCCCcccCCCCCcceeEEecCccCCCeeEEEEEEeEEEEeeeCCCCCceEEEEecCCCCcCCCCC
Q 029542 54 VDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKD 133 (192)
Q Consensus 54 vDR~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~p~~~G~v~~vrviGvl~miD~ge~D~KiIaV~~~dp~~~~i~d 133 (192)
+||+|++++.||+|||||||||++|||||||+||++.|+.||++++|||||+|+|+|+||.|||||||+.+||+|++|++
T Consensus 30 ~DR~l~~~~~YP~NYGfIP~Tl~~DGDPLDvlvl~~~~~~pG~vi~~r~IGvl~m~D~ge~D~KIIaV~~~dp~~~~i~d 109 (184)
T PRK02230 30 VDRILRGDFVYPANYGFIKEALDWDGDELDVLVYSDQKFLPGTVLNARIIGAMKMIDDGETDTKLIAVHDDDYRLDHINS 109 (184)
T ss_pred EEeecCCCCCCCcCcccCCCccCCCCCceEEEEECCCCCCCccEEEEEEEEEEEeccCCCcCcEEEEEECCCCChhhcCC
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHhhcCCCcee-EeccccCHHHHHHHHHHHHHHHHHH
Q 029542 134 IKELPPHRLAEIRRFFEDYKKNENKKV-DVEDFLPAEAAIEAIKYSMDLYASY 185 (192)
Q Consensus 134 i~Dl~~~~l~~i~~fF~~YK~legK~v-~~~~~~~~~~A~~vI~~~~~~y~~~ 185 (192)
++|||++++++|+|||++||.++||++ +++||.|+++|+++|++|+++|+++
T Consensus 110 i~Dlp~~~l~~I~~fF~~YK~legk~~~~v~g~~~~~~A~~~I~~~~~~y~~~ 162 (184)
T PRK02230 110 LKDLPQHWLDEIEYFFSNYKNWKRKGITKVKGFEDEKWALKEYKECVELMKKY 162 (184)
T ss_pred hHHCCHHHHHHHHHHHHHhcCCCCCCeEEeCCccCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999998876 5999999999999999999999875
No 6
>COG0221 Ppa Inorganic pyrophosphatase [Energy production and conversion]
Probab=100.00 E-value=3.1e-53 Score=349.44 Aligned_cols=148 Identities=48% Similarity=0.800 Sum_probs=143.8
Q ss_pred ccCCCCCCCCCCCCeEEEE----------------------eeeccccccccccCCCCCcccCCCCCcceeEEecCccCC
Q 029542 36 HPWHDLEIGPGAPAVCNCV----------------------DRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVL 93 (192)
Q Consensus 36 spwhdipl~~~~p~~vn~v----------------------DR~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~p~~ 93 (192)
|+||+||++++. +.+|++ ||++++++.||+||||||+||++|||||||+|++++|+.
T Consensus 1 ~~~~~~~~~~~~-~~i~vviEIP~~s~~KyE~dk~~~~~~vdR~l~~~~~YP~NYGfiP~Tl~~DGDPlDvlVi~~~p~~ 79 (171)
T COG0221 1 MDLHKIPAGPDD-EDINVVIEIPKGSNIKYEVDKETGRLLVDRPLKTPMGYPVNYGFIPNTLSDDGDPLDVLVIGEEPLA 79 (171)
T ss_pred CCccccCCCCCc-ceEEEEEeccCCCccceEEeeecCceeeeecCCCCCcCCccccccCCcccCCCCceEEEEEcCcCCC
Confidence 589999999987 789988 899999999999999999999999999999999999999
Q ss_pred CeeEEEEEEeEEEEeeeCCCCCceEEEEecCCCCcCCCCCCCCCChhHHHHHHHHHHHhhcCC-CceeEeccccCHHHHH
Q 029542 94 PGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAEAAI 172 (192)
Q Consensus 94 ~G~v~~vrviGvl~miD~ge~D~KiIaV~~~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le-gK~v~~~~~~~~~~A~ 172 (192)
|||+++|||||+|+|+|+||.|||||||+..||+|++|++++|++.+++++|+|||++||.+| ||++++.||+|+++|+
T Consensus 80 pG~vi~~r~iG~l~m~D~~e~D~Kviav~~~dp~~~~i~di~d~~~~~~~~i~~ffe~yK~le~~k~~~~~gw~~~~~A~ 159 (171)
T COG0221 80 PGCVIQARPIGVLKMIDEGEKDDKVIAVPKLDPRYEHIKDISDLPEHLLDEIQHFFETYKDLEKGKWVKVEGWEDAEEAK 159 (171)
T ss_pred ceeEEEEEEEEEEEEeeCCCcceEEEEecCCCcchhhccchhHHHHHHHHHHHHHHHHHHhcCCCcEEEeccccCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 5999999999999999
Q ss_pred HHHHHHHHHHHH
Q 029542 173 EAIKYSMDLYAS 184 (192)
Q Consensus 173 ~vI~~~~~~y~~ 184 (192)
++|++|+++|++
T Consensus 160 ~~i~~~~~~~k~ 171 (171)
T COG0221 160 KEIKEAIERYKE 171 (171)
T ss_pred HHHHHHHHHhhC
Confidence 999999999974
No 7
>PF00719 Pyrophosphatase: Inorganic pyrophosphatase; InterPro: IPR008162 Inorganic pyrophosphatase (3.6.1.1 from EC) (PPase) [, ] is the enzyme responsible for the hydrolysis of pyrophosphate (PPi) which is formed principally as the product of the many biosynthetic reactions that utilise ATP. All known PPases require the presence of divalent metal cations, with magnesium conferring the highest activity. Among other residues, a lysine has been postulated to be part of or close to the active site. PPases have been sequenced from bacteria such as Escherichia coli (homohexamer), Bacillus PS3 (Thermophilic bacterium PS-3) and Thermus thermophilus, from the archaebacteria Thermoplasma acidophilum, from fungi (homodimer), from a plant, and from bovine retina. In yeast, a mitochondrial isoform of PPase has been characterised which seems to be involved in energy production and whose activity is stimulated by uncouplers of ATP synthesis. The sequences of PPases share some regions of similarities, among which is a region that contains three conserved aspartates that are involved in the binding of cations.; GO: 0000287 magnesium ion binding, 0004427 inorganic diphosphatase activity, 0006796 phosphate-containing compound metabolic process, 0005737 cytoplasm; PDB: 2UXS_A 1WCF_A 1SXV_A 3I4Q_A 2PRD_A 2IHP_B 1PYP_A 2IK7_A 2IK4_A 1E9G_A ....
Probab=100.00 E-value=1e-53 Score=347.57 Aligned_cols=136 Identities=53% Similarity=0.874 Sum_probs=127.5
Q ss_pred CeEEEEeeeccccccccccCCCCCcccCCCCCcceeEEecCccCCCeeEEEEEEeEEEEeeeCCCCCceEEEEecCCCCc
Q 029542 49 AVCNCVDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEF 128 (192)
Q Consensus 49 ~~vn~vDR~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~p~~~G~v~~vrviGvl~miD~ge~D~KiIaV~~~dp~~ 128 (192)
.-++.+||++++++.||+|||||||||++||||||||||++.|+.||++++||+||+|+|+|+||+|||||||+.+||+|
T Consensus 20 ~~~~~idr~~~~~~~yP~NYGfIP~T~~~DGDPLDvlvl~~~~~~~G~v~~~r~iG~l~m~D~ge~D~KiiaV~~~dp~~ 99 (156)
T PF00719_consen 20 TGLNPIDRPLYSSMPYPFNYGFIPQTLGGDGDPLDVLVLGSEPLPPGSVVRVRVIGVLKMIDDGERDDKIIAVPVDDPRY 99 (156)
T ss_dssp TTEEEEEEE-SSSBS-SSEEEEETTEEBTTSSCEEEEEESSS---TTEEEEEEEEEEEEEEETTEEEEEEEEEETTCGGG
T ss_pred CCCccceeccccCcCCccccccccceecCCCCeeeEEEEecccccceeEEEEeceEEEEEeeCCCCceEEEEeccCCccc
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHhhcC-CCceeEeccccCHHHHHHHHHHHHHHHHH
Q 029542 129 RHYKDIKELPPHRLAEIRRFFEDYKKN-ENKKVDVEDFLPAEAAIEAIKYSMDLYAS 184 (192)
Q Consensus 129 ~~i~di~Dl~~~~l~~i~~fF~~YK~l-egK~v~~~~~~~~~~A~~vI~~~~~~y~~ 184 (192)
++|++++|++++.+++|++||++||.+ +||++.+++|.++++|+++|++||++|++
T Consensus 100 ~~i~dl~dl~~~~~~~i~~fF~~YK~l~~~k~~~~~~~~~~~~A~~~i~~~~~~y~~ 156 (156)
T PF00719_consen 100 DDIKDLEDLPPHLLDEIEHFFRNYKDLEENKWVEVGGWEDAEEALKVIKEAHERYKK 156 (156)
T ss_dssp TTHHSGGGSSHHHHHHHHHHHHHTTTTSTTEEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred CCcCcHHHhChhHHHHHHHHHHHhcCcCCCCeEEeCCCcCHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999 79999999999999999999999999986
No 8
>cd00412 pyrophosphatase Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules of orthophosphates (Pi). The reaction requires bivalent cations. The enzymes in general exist as homooligomers.
Probab=100.00 E-value=6.8e-53 Score=342.73 Aligned_cols=127 Identities=53% Similarity=0.934 Sum_probs=124.2
Q ss_pred EeeeccccccccccCCCCCcccCCCCCcceeEEecCccCCCeeEEEEEEeEEEEeeeCCCCCceEEEEecCCCCcCCCCC
Q 029542 54 VDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKD 133 (192)
Q Consensus 54 vDR~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~p~~~G~v~~vrviGvl~miD~ge~D~KiIaV~~~dp~~~~i~d 133 (192)
+||++++++.||+|||||||||++||||||||||++.|++||++++|||||+|+|+|+||.|||||||+.+||+|++|+|
T Consensus 28 ~DR~l~~~~~yP~nYGfiP~T~~~DgDPlDvlvl~~~~~~~G~~~~~r~iG~l~m~D~ge~D~KiiaV~~~dp~~~~i~~ 107 (155)
T cd00412 28 VDRFLYSSMGYPWNYGFIPQTLEDDGDPLDVLVIGEEPLFPGSVIRVRPLGVLKMIDEGETDWKVIAVPVDDPRYSHIND 107 (155)
T ss_pred eccccccCCcCcccccccCCcccCCCCceEEEEEcCCCCCCeeEEEEEEEEEEEeccCCCccceEEEeeCCCcccccCCC
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHhhcCCC-ceeEeccccCHHHHHHHHHHHHH
Q 029542 134 IKELPPHRLAEIRRFFEDYKKNEN-KKVDVEDFLPAEAAIEAIKYSMD 180 (192)
Q Consensus 134 i~Dl~~~~l~~i~~fF~~YK~leg-K~v~~~~~~~~~~A~~vI~~~~~ 180 (192)
++|||++++++|+|||++||.++| |++++.+|.|+++|+++|++|++
T Consensus 108 l~Dl~~~~l~~I~~fF~~YK~le~~k~~~~~g~~~~~~A~~~I~~~~~ 155 (155)
T cd00412 108 ISDVPPHLLDEIKHFFEHYKDLEGKKEVKVAGWKDKEEALKIIKESIE 155 (155)
T ss_pred hHHCCHHHHHHHHHHHHHhcccCCCCceEECcCcCHHHHHHHHHHHhC
Confidence 999999999999999999999997 78999999999999999999974
No 9
>KOG1626 consensus Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38 [Energy production and conversion]
Probab=100.00 E-value=5.4e-53 Score=364.25 Aligned_cols=178 Identities=39% Similarity=0.597 Sum_probs=157.7
Q ss_pred CCCCCCCCCCcchhhcccCC-CCcccccCCCCCCCCCCCCeEEEE---------------------------------ee
Q 029542 11 NNSGGPPVALNERILSSMSH-RSVAAHPWHDLEIGPGAPAVCNCV---------------------------------DR 56 (192)
Q Consensus 11 ~~~~~~~~~~~~r~~~~~~~-~~~~~spwhdipl~~~~p~~vn~v---------------------------------DR 56 (192)
+.++|+.++++||++ +.+ .+..+||||||||..+.-.++|++ +|
T Consensus 5 t~e~g~~~s~~~rvy--~~~~~~~~iS~fhdipl~a~~~~~~nmvvEiPrwtnak~EIs~k~~~~pikqD~KkGklR~v~ 82 (279)
T KOG1626|consen 5 TVETGKKYSLDYRVY--FPKLNGRIISPFHDIPLAAHPWHDLNMVVEIPRWTNAKMEISKKEPFNPIKQDKKKGKLRFVR 82 (279)
T ss_pred eeeccccCCccceee--ecCCCCccccccccCccccCccccEeecccccceeeeEEEEeccCCCCcceeeccCCceEEEE
Confidence 457899999999999 455 444899999999987755666665 67
Q ss_pred eccccccccccCCCCCcccC------------CCCCcceeEEecCccCCCeeEEEEEEeEEEEeeeCCCCCceEEEEecC
Q 029542 57 VLYSSVVYPHNYGFIPRTIC------------EDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD 124 (192)
Q Consensus 57 ~l~~~~~yP~NYGfIP~T~~------------~DgDPLDvlvl~~~p~~~G~v~~vrviGvl~miD~ge~D~KiIaV~~~ 124 (192)
.+|++..||+|||||||||+ |||||||||+||+.+..+||+++||+||+|+||||||+|||||||.++
T Consensus 83 n~fp~~gYiwNYGalPqTwedP~~~~~~t~~~gDnDPiDV~eIg~~~~~~G~vl~vKvLG~malIDeGE~DwKiIAIdvn 162 (279)
T KOG1626|consen 83 NLFPYKGYIWNYGALPQTWEDPNHVDPETKAKGDNDPIDVLEIGQEPVLPGCVLQVKVLGLMALIDEGETDWKIIAIDVN 162 (279)
T ss_pred ecccccccccccccCcccccCCCcccccccccCCCCcceeeEecccccccccEEEEEeeeeeecccCCCccceEEEEECC
Confidence 88999999999999999997 477999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCCCCCC---CChhHHHHHHHHHHHhhcCCCce----eEeccccCHHHHHHHHHHHHHHHHHHHHHHh
Q 029542 125 DPEFRHYKDIKE---LPPHRLAEIRRFFEDYKKNENKK----VDVEDFLPAEAAIEAIKYSMDLYASYIVESL 190 (192)
Q Consensus 125 dp~~~~i~di~D---l~~~~l~~i~~fF~~YK~legK~----v~~~~~~~~~~A~~vI~~~~~~y~~~~~~~~ 190 (192)
||.++.+||++| ++|++|+++++||+.||.++||. +..+.++++++|.++|++||+.|+++++++|
T Consensus 163 DP~A~~~ndi~DV~~~~Pg~L~~tr~wFr~YKiPdGKpeN~faf~~~f~n~~~A~~iIk~t~d~w~~li~~~~ 235 (279)
T KOG1626|consen 163 DPLASEYNDIEDVEKLFPGLLEATRRWFRDYKIPDGKPENKFAFVGDFLNKKFALDIIKETHDLWAALIKGKL 235 (279)
T ss_pred CcchhhhccHHHHHHhCcchHHHHHHHHHHcCCCCCCCccchhhcccccChHHHHHHHHHHHHHHHHHHhccc
Confidence 996666665555 57999999999999999888876 4457899999999999999999999999876
No 10
>KOG1626 consensus Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38 [Energy production and conversion]
Probab=51.29 E-value=8.9 Score=34.35 Aligned_cols=143 Identities=19% Similarity=0.101 Sum_probs=79.7
Q ss_pred CCCCCCCCcchhhcccCCCCcccccCCCCCCCCCCC---------------------------CeEEEE-----------
Q 029542 13 SGGPPVALNERILSSMSHRSVAAHPWHDLEIGPGAP---------------------------AVCNCV----------- 54 (192)
Q Consensus 13 ~~~~~~~~~~r~~~~~~~~~~~~spwhdipl~~~~p---------------------------~~vn~v----------- 54 (192)
-+=.+.+++-|++|+|+++...+++||++..+.+.| ..+.-+
T Consensus 16 ~rvy~~~~~~~~iS~fhdipl~a~~~~~~nmvvEiPrwtnak~EIs~k~~~~pikqD~KkGklR~v~n~fp~~gYiwNYG 95 (279)
T KOG1626|consen 16 YRVYFPKLNGRIISPFHDIPLAAHPWHDLNMVVEIPRWTNAKMEISKKEPFNPIKQDKKKGKLRFVRNLFPYKGYIWNYG 95 (279)
T ss_pred ceeeecCCCCccccccccCccccCccccEeecccccceeeeEEEEeccCCCCcceeeccCCceEEEEecccccccccccc
Confidence 344567889999999999999999999987764432 333333
Q ss_pred --eeecc-----------ccccccccCCCCCcccCCCCCcceeEEecCccCCCeeEEEEEEeEEEEeeeCC--CC-----
Q 029542 55 --DRVLY-----------SSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQG--EK----- 114 (192)
Q Consensus 55 --DR~l~-----------~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~p~~~G~v~~vrviGvl~miD~g--e~----- 114 (192)
=|.+- -+-.=|-+-=-|=|+...-|+=|-|=+||.-++----...=|+|.+ ..-|.. +.
T Consensus 96 alPqTwedP~~~~~~t~~~gDnDPiDV~eIg~~~~~~G~vl~vKvLG~malIDeGE~DwKiIAI-dvnDP~A~~~ndi~D 174 (279)
T KOG1626|consen 96 ALPQTWEDPNHVDPETKAKGDNDPIDVLEIGQEPVLPGCVLQVKVLGLMALIDEGETDWKIIAI-DVNDPLASEYNDIED 174 (279)
T ss_pred cCcccccCCCcccccccccCCCCcceeeEecccccccccEEEEEeeeeeecccCCCccceEEEE-ECCCcchhhhccHHH
Confidence 01100 0111344444666777778888888888875543322345566643 333321 00
Q ss_pred -------------Cc-eEEEEecCCCCcCCCCCCCCCC-hhHHHHHHHHHHHhhcCC
Q 029542 115 -------------DD-KIIAVCADDPEFRHYKDIKELP-PHRLAEIRRFFEDYKKNE 156 (192)
Q Consensus 115 -------------D~-KiIaV~~~dp~~~~i~di~Dl~-~~~l~~i~~fF~~YK~le 156 (192)
+| +.-=||.+.|+-...=+=+=++ ...++.|++--..||.+-
T Consensus 175 V~~~~Pg~L~~tr~wFr~YKiPdGKpeN~faf~~~f~n~~~A~~iIk~t~d~w~~li 231 (279)
T KOG1626|consen 175 VEKLFPGLLEATRRWFRDYKIPDGKPENKFAFVGDFLNKKFALDIIKETHDLWAALI 231 (279)
T ss_pred HHHhCcchHHHHHHHHHHcCCCCCCCccchhhcccccChHHHHHHHHHHHHHHHHHH
Confidence 00 1111344444311111111122 467888888888888765
No 11
>PF07177 Neuralized: Neuralized; InterPro: IPR006573 NEUZ is a domain of unknown function found in neuralized proteins, i.e. proteins involved in the specification of the neuroblast during cellular differentiation. ; PDB: 2YUE_A 2E63_A.
Probab=43.35 E-value=25 Score=24.89 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=16.4
Q ss_pred eeEEecCccCCCeeEEEEEEeEE
Q 029542 83 DVLVLMQEPVLPGSFLRCRAIGL 105 (192)
Q Consensus 83 Dvlvl~~~p~~~G~v~~vrviGv 105 (192)
..||+++.|+.+|+.+++|+.-+
T Consensus 30 ~giVFS~rPl~~~E~~~v~I~~~ 52 (69)
T PF07177_consen 30 NGIVFSSRPLRIGEKFEVRIDEV 52 (69)
T ss_dssp S-EEEESS-B-TT-EEEEEEEEE
T ss_pred ceEEEecCCccCCCEEEEEEEec
Confidence 47899999999999999998543
No 12
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=43.35 E-value=15 Score=25.92 Aligned_cols=28 Identities=21% Similarity=0.428 Sum_probs=21.1
Q ss_pred CCCCCcccCCCCCcceeEEecCccCCCeeEEEEEEeEE
Q 029542 68 YGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGL 105 (192)
Q Consensus 68 YGfIP~T~~~DgDPLDvlvl~~~p~~~G~v~~vrviGv 105 (192)
=||||.+-..+. ..+.+|+.+.|+++.+
T Consensus 30 ~Gfl~~~~~~~~----------~~~~~Gq~v~~~V~~v 57 (74)
T cd05694 30 TGFLPKKDAGNF----------SKLKVGQLLLCVVEKV 57 (74)
T ss_pred EEEEEHHHCCcc----------cccCCCCEEEEEEEEE
Confidence 478887654333 4688999999999876
No 13
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=36.83 E-value=16 Score=32.37 Aligned_cols=27 Identities=26% Similarity=0.506 Sum_probs=22.5
Q ss_pred CCcCCCCCCCCCChhHHHHHHHHHHHh
Q 029542 126 PEFRHYKDIKELPPHRLAEIRRFFEDY 152 (192)
Q Consensus 126 p~~~~i~di~Dl~~~~l~~i~~fF~~Y 152 (192)
|.|--++|+++||.-+-+.+++||+.-
T Consensus 237 pYy~~~~~~~~lp~~l~~~lrqwf~~~ 263 (266)
T cd01460 237 PYYVIVRDLNQLPSVLSDALRQWFELV 263 (266)
T ss_pred CeEEEecChhHhHHHHHHHHHHHHHHH
Confidence 456668899999999999999999854
No 14
>smart00588 NEUZ domain in neuralized proteins.
Probab=35.92 E-value=47 Score=25.88 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=31.3
Q ss_pred CCCcceeEEecCccCCCeeEEEEEEeEEEEeeeCCCCCceEEEEecCCCC
Q 029542 78 DSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPE 127 (192)
Q Consensus 78 DgDPLDvlvl~~~p~~~G~v~~vrviGvl~miD~ge~D~KiIaV~~~dp~ 127 (192)
+.+.=+.||+++.|+.+|+.+.+|+.-.-..- .-.==+++-..||.
T Consensus 26 ~~~f~~givFS~rPl~~~E~~~v~i~~~~~~w----~G~l~~G~Ts~dP~ 71 (123)
T smart00588 26 ASDFCNALVFSARPLRINELFEVKIEKVVRKW----SGALRFGVTTCDPA 71 (123)
T ss_pred cCCcCceEEecCCCCcCCCEEEEEEEEecCCc----cCceEEEEecCCcc
Confidence 44467889999999999999999987542111 00123467777884
No 15
>PF13333 rve_2: Integrase core domain
Probab=31.12 E-value=40 Score=22.01 Aligned_cols=34 Identities=26% Similarity=0.372 Sum_probs=24.7
Q ss_pred HHHHHhhcCCCceeEeccccCHHHHHHHHHHHHHHHH
Q 029542 147 RFFEDYKKNENKKVDVEDFLPAEAAIEAIKYSMDLYA 183 (192)
Q Consensus 147 ~fF~~YK~legK~v~~~~~~~~~~A~~vI~~~~~~y~ 183 (192)
.||.+.|.-- +....|.+.+++++.|.+-++.|.
T Consensus 2 sff~~lK~E~---~~~~~~~t~eel~~~I~~YI~~yN 35 (52)
T PF13333_consen 2 SFFGTLKTEM---LYRQKFKTREELKQAIDEYIDYYN 35 (52)
T ss_pred cchHhhcchh---cCCcccchHHHHHHHHHHHHHHhc
Confidence 5777777422 223368999999999999998773
No 16
>KOG1110 consensus Putative steroid membrane receptor Hpr6.6/25-Dx [General function prediction only]
Probab=29.99 E-value=31 Score=29.36 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=28.7
Q ss_pred ceEEEEecCCCCcCCCCCCCCCChhHHHHHHHHHHHhhc
Q 029542 116 DKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKK 154 (192)
Q Consensus 116 ~KiIaV~~~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~ 154 (192)
.|.||...-|. .+.+.|++||....++.+.+|...||.
T Consensus 108 SR~La~~s~d~-~d~~ddlsdL~a~e~eal~eWE~~fk~ 145 (183)
T KOG1110|consen 108 SRGLAKMSFDL-SDETDDLSDLTAEELEALNEWETKFKA 145 (183)
T ss_pred HHHHHhcccch-hhccccccccCHHHHHHHHHHHHHHhh
Confidence 34444444443 456778999999999999999999984
No 17
>PLN02150 terpene synthase/cyclase family protein
Probab=29.24 E-value=87 Score=23.42 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHH-HHHHHHHHHHhc
Q 029542 167 PAEAAIEAIKYSM-DLYASYIVESLR 191 (192)
Q Consensus 167 ~~~~A~~vI~~~~-~~y~~~~~~~~~ 191 (192)
+.++|.+.|++-+ +.|+++..|+|+
T Consensus 20 seeeA~~~i~~li~~~WK~iN~e~l~ 45 (96)
T PLN02150 20 TKEEAVSELKKMIRDNYKIVMEEFLT 45 (96)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5688988888887 689999998886
No 18
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=25.33 E-value=84 Score=28.94 Aligned_cols=60 Identities=22% Similarity=0.243 Sum_probs=45.5
Q ss_pred eeeccccccccccCCCCCc-------------ccC-------CCCCcceeEEecCccCCCeeEEEEEEeEEEEeeeCCCC
Q 029542 55 DRVLYSSVVYPHNYGFIPR-------------TIC-------EDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEK 114 (192)
Q Consensus 55 DR~l~~~~~yP~NYGfIP~-------------T~~-------~DgDPLDvlvl~~~p~~~G~v~~vrviGvl~miD~ge~ 114 (192)
+|-++++..+-.+-|.||. ||+ --|-|+++.-+.+ ..|..+-. .|+|--.++|..
T Consensus 84 gr~~f~sv~f~~~egw~vGe~sqll~T~DgGqsWARi~~~e~~eg~~~sI~f~d~---q~g~m~gd--~Gail~T~DgGk 158 (339)
T COG4447 84 GRHAFHSVSFLGMEGWIVGEPSQLLHTTDGGQSWARIPLSEKLEGFPDSITFLDD---QRGEMLGD--QGAILKTTDGGK 158 (339)
T ss_pred hhhheeeeeeecccccccCCcceEEEecCCCcchhhchhhcCCCCCcceeEEecc---hhhhhhcc--cceEEEecCCcc
Confidence 4667778888778899885 342 4789999999887 45665555 788888888888
Q ss_pred CceEE
Q 029542 115 DDKII 119 (192)
Q Consensus 115 D~KiI 119 (192)
.||=+
T Consensus 159 ~Wk~l 163 (339)
T COG4447 159 NWKAL 163 (339)
T ss_pred cHhHh
Confidence 88865
No 19
>PF07469 DUF1518: Domain of unknown function (DUF1518) ; InterPro: IPR010011 This domain, which is usually found tandemly repeated, is found various receptor co-activating proteins.; GO: 0005634 nucleus
Probab=24.69 E-value=41 Score=23.57 Aligned_cols=14 Identities=36% Similarity=0.672 Sum_probs=11.5
Q ss_pred ccccccCCCCCccc
Q 029542 62 VVYPHNYGFIPRTI 75 (192)
Q Consensus 62 ~~yP~NYGfIP~T~ 75 (192)
+.||-|||..+|+=
T Consensus 19 FpyppnyGm~qq~d 32 (58)
T PF07469_consen 19 FPYPPNYGMSQQPD 32 (58)
T ss_pred cccCCCCCccCCCC
Confidence 57889999998863
No 20
>PF05182 Fip1: Fip1 motif; InterPro: IPR007854 This short motif is about 40 amino acids in length and is found in the Fip1 protein that is a component of a Saccharomyces cerevisiae pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase []. This region of Fip1 is needed for the interaction with the Yth1 subunit of the complex and for specific polyadenylation of the cleaved mRNA precursor [].
Probab=24.42 E-value=21 Score=23.69 Aligned_cols=11 Identities=45% Similarity=0.628 Sum_probs=9.7
Q ss_pred ccCCCCCcccC
Q 029542 66 HNYGFIPRTIC 76 (192)
Q Consensus 66 ~NYGfIP~T~~ 76 (192)
|||||=..||.
T Consensus 24 FNYGf~E~tW~ 34 (45)
T PF05182_consen 24 FNYGFNEETWR 34 (45)
T ss_pred cCCCCCHHHHH
Confidence 99999999883
No 21
>PF08437 Glyco_transf_8C: Glycosyl transferase family 8 C-terminal; InterPro: IPR013645 This domain is found at the C terminus of bacterial glucosyltransferase and galactosyltransferase proteins. ; GO: 0008918 lipopolysaccharide 3-alpha-galactosyltransferase activity, 0009103 lipopolysaccharide biosynthetic process
Probab=22.89 E-value=42 Score=22.94 Aligned_cols=13 Identities=23% Similarity=0.687 Sum_probs=10.3
Q ss_pred ccccCCCCCCCCC
Q 029542 34 AAHPWHDLEIGPG 46 (192)
Q Consensus 34 ~~spwhdipl~~~ 46 (192)
..|||.|+|+-+.
T Consensus 12 ~~SPWk~~pl~~a 24 (57)
T PF08437_consen 12 KNSPWKDIPLLKA 24 (57)
T ss_pred HcCCCCCCCCcCC
Confidence 4699999999643
No 22
>PF09476 Pilus_CpaD: Pilus biogenesis CpaD protein (pilus_cpaD); InterPro: IPR019027 Proteins in this entry consist of a pilus biogenesis protein, CpaD, from Caulobacter, and homologues in other bacteria, including three in the root nodule bacterium Bradyrhizobium japonicum. The molecular function of the homologues is not known.
Probab=22.24 E-value=2.6e+02 Score=23.56 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=27.0
Q ss_pred CCCChhHHHHHHHHHHHhhcCCCceeEeccccC
Q 029542 135 KELPPHRLAEIRRFFEDYKKNENKKVDVEDFLP 167 (192)
Q Consensus 135 ~Dl~~~~l~~i~~fF~~YK~legK~v~~~~~~~ 167 (192)
.-|.+...+.|+.||..|...-+-.+.+.-+.+
T Consensus 52 ~~Lt~~q~~~l~~f~~~~~~~~~~~v~i~~psg 84 (203)
T PF09476_consen 52 GGLTPSQRDRLRGFASRYGRRGGGRVTIDVPSG 84 (203)
T ss_pred CCCCHHHHHHHHHHHHHHhccCCCeEEEecCCC
Confidence 347789999999999999988777777776655
No 23
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=22.10 E-value=1.4e+02 Score=26.75 Aligned_cols=55 Identities=31% Similarity=0.497 Sum_probs=42.1
Q ss_pred eEEecC-ccCCCeeEEEEEEeEEEEeeeCCCCCceEEEEecCCCCcCCCCCCCCCChhHHHHHHHHHHH
Q 029542 84 VLVLMQ-EPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFED 151 (192)
Q Consensus 84 vlvl~~-~p~~~G~v~~vrviGvl~miD~ge~D~KiIaV~~~dp~~~~i~di~Dl~~~~l~~i~~fF~~ 151 (192)
.|+|-. ..+.|....+|=| .+.+||||...|. ..+..+.++-..+.+.|..||..
T Consensus 151 ~LvLrkw~~l~p~~EFRcFV-----------~~~~LiaISQr~~--~~~~~L~~~~~~I~~~I~~F~~~ 206 (299)
T PF07065_consen 151 ELVLRKWVNLNPSMEFRCFV-----------RNRKLIAISQRDL--NYYDFLEELKEEIRSKIQEFFEE 206 (299)
T ss_pred EEEEeccccCCccceEEEEE-----------ECCEEEEEecccc--cccHHHHHHHHHHHHHHHHHHHH
Confidence 344443 5678888888877 6899999999887 45666666777889999999954
No 24
>cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=20.92 E-value=80 Score=21.21 Aligned_cols=34 Identities=15% Similarity=-0.002 Sum_probs=20.6
Q ss_pred CCCCCcccCCCCCcceeEEecCccCCCeeEEEEEEeEE
Q 029542 68 YGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGL 105 (192)
Q Consensus 68 YGfIP~T~~~DgDPLDvlvl~~~p~~~G~v~~vrviGv 105 (192)
=||++.|--.|....+ . .....+|+.++|+++.+
T Consensus 28 ~g~v~~s~l~~~~~~~---~-~~~~~~Gd~v~~~V~~~ 61 (73)
T cd05706 28 TGPSFITDALDDYSEA---L-PYKFKKNDIVRACVLSV 61 (73)
T ss_pred EEEEEhhhccCccccc---c-ccccCCCCEEEEEEEEE
Confidence 4677765433321111 1 23478899999999886
No 25
>PTZ00162 DNA-directed RNA polymerase II subunit 7; Provisional
Probab=20.51 E-value=1.9e+02 Score=23.86 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=33.6
Q ss_pred cccCCCCCcccCCCC---Ccce--eEEec---CccCCCeeEEEEEEeEEEEeeeCCCCCceEEEEecCCCCcC
Q 029542 65 PHNYGFIPRTICEDS---DPMD--VLVLM---QEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFR 129 (192)
Q Consensus 65 P~NYGfIP~T~~~Dg---DPLD--vlvl~---~~p~~~G~v~~vrviGvl~miD~ge~D~KiIaV~~~dp~~~ 129 (192)
|++ +|||.-+-.|+ ||-. -...+ ...+..|+.+++|++|+- .|++ +-++++ ...+|...
T Consensus 103 p~~-ifI~~~~l~~~~~fd~~~~~~~~~~~~~~~~i~~g~~VR~rV~~v~--~~~~--~~~~i~-T~~~~~LG 169 (176)
T PTZ00162 103 PLK-AFVSRSAIPPDFVYDSDSAYPCYISSDGQIQIKPNTEVRLRLQGVR--YDAS--NLFAIA-TINSDYLG 169 (176)
T ss_pred CeE-EEEcHHHCCCccEECCCCCcceEecCCCcEEECCCCEEEEEEEEEE--ecCC--CcEEEE-EecCCCcC
Confidence 777 88877654321 1110 01112 235788999999999993 4443 346666 44455433
No 26
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=20.28 E-value=21 Score=31.07 Aligned_cols=49 Identities=16% Similarity=0.233 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHhhcCCCceeEeccccCHHHHHHHHHHHHHHHHHHHHHHhc
Q 029542 139 PHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAAIEAIKYSMDLYASYIVESLR 191 (192)
Q Consensus 139 ~~~l~~i~~fF~~YK~legK~v~~~~~~~~~~A~~vI~~~~~~y~~~~~~~~~ 191 (192)
|.++..|--=|++||.+..+.| +.+.+.|++++....+.|++-+.+.|.
T Consensus 75 P~LRR~IGvVFQD~rLL~~~tv----yeNVA~pL~v~G~~~~~i~~rV~~~L~ 123 (223)
T COG2884 75 PFLRRQIGVVFQDFRLLPDRTV----YENVALPLRVIGKPPREIRRRVSEVLD 123 (223)
T ss_pred chhhheeeeEeeeccccccchH----hhhhhhhhhccCCCHHHHHHHHHHHHH
Confidence 4888999999999999998876 578888999988888888887777664
No 27
>smart00362 RRM_2 RNA recognition motif.
Probab=20.23 E-value=2.1e+02 Score=17.45 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhcCC------C----ceeEeccccCHHHHHHHHHHH
Q 029542 141 RLAEIRRFFEDYKKNE------N----KKVDVEDFLPAEAAIEAIKYS 178 (192)
Q Consensus 141 ~l~~i~~fF~~YK~le------g----K~v~~~~~~~~~~A~~vI~~~ 178 (192)
..++|++||+.|-... . +...+..|.+.+.|.+.++..
T Consensus 12 ~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~ 59 (72)
T smart00362 12 TEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEAL 59 (72)
T ss_pred CHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHh
Confidence 4568899999885321 1 234456788888888877643
No 28
>cd05695 S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 3 (hs3). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=20.19 E-value=74 Score=21.54 Aligned_cols=32 Identities=13% Similarity=0.111 Sum_probs=20.7
Q ss_pred CCCCCcccCCCCCcceeEEecCccCCCeeEEEEEEeEE
Q 029542 68 YGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGL 105 (192)
Q Consensus 68 YGfIP~T~~~DgDPLDvlvl~~~p~~~G~v~~vrviGv 105 (192)
=||+|.+.-.+. ... ..-+..|+.++||++.+
T Consensus 25 ~g~v~~~~l~~~-~~~-----~~~~~~G~~i~~kVi~i 56 (66)
T cd05695 25 TGTVDFLHLDPE-KSS-----KSTYKEGQKVRARILYV 56 (66)
T ss_pred eEEEEHHHcCCc-cCc-----ccCcCCCCEEEEEEEEE
Confidence 366776644221 111 44588999999999977
Done!