Query 029542
Match_columns 192
No_of_seqs 148 out of 1072
Neff 5.1
Searched_HMMs 29240
Date Tue Mar 26 00:07:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029542.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029542hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q46_A TT-ippase; inorganic py 100.0 4.3E-64 1.5E-68 415.0 12.1 153 35-187 1-175 (178)
2 3gvf_A Inorganic pyrophosphata 100.0 7.3E-62 2.5E-66 406.7 14.6 156 29-184 15-196 (196)
3 3fq3_A Inorganic pyrophosphata 100.0 1.4E-61 4.8E-66 405.2 15.9 156 29-184 15-196 (197)
4 2prd_A Pyrophosphate phosphohy 100.0 1.5E-61 5.3E-66 398.6 15.8 149 36-184 1-174 (174)
5 3ld3_A Inorganic pyrophosphata 100.0 6E-61 2E-65 401.9 15.7 156 29-184 15-196 (199)
6 2au7_A Inorganic pyrophosphata 100.0 4.7E-60 1.6E-64 390.0 17.0 148 37-184 1-174 (175)
7 1e9g_A Ppase, inorganic pyroph 100.0 3.3E-61 1.1E-65 422.0 9.1 176 12-189 5-233 (286)
8 2bqx_A Inorganic pyrophosphata 100.0 1E-59 3.5E-64 387.4 13.9 148 36-184 1-173 (173)
9 3d53_A Inorganic pyrophosphata 100.0 3.3E-59 1.1E-63 384.4 14.7 145 36-181 2-172 (173)
10 3tr4_A Inorganic pyrophosphata 100.0 1.1E-58 3.9E-63 382.7 14.7 145 39-184 6-176 (178)
11 1qez_A Ppase, S-ppase, protein 100.0 6.3E-58 2.2E-62 376.8 15.3 145 40-184 2-171 (173)
12 1sxv_A Inorganic pyrophosphata 100.0 4.2E-56 1.4E-60 365.6 14.4 131 54-184 38-169 (172)
13 1jo6_A KCNMB2, potassium large 35.5 6.4 0.00022 25.3 -0.4 21 64-84 2-33 (45)
14 2yue_A Protein neuralized; str 33.0 39 0.0013 26.6 3.8 46 83-139 36-84 (168)
15 1why_A Hypothetical protein ri 30.8 55 0.0019 21.9 3.8 38 141-178 30-73 (97)
16 2ku7_A MLL1 PHD3-CYP33 RRM chi 26.3 80 0.0027 22.2 4.2 37 141-177 76-124 (140)
17 2cqh_A IGF-II mRNA-binding pro 26.3 79 0.0027 20.8 3.9 39 141-179 21-65 (93)
18 2cqb_A Peptidyl-prolyl CIS-tra 26.2 74 0.0025 21.3 3.8 38 141-178 25-74 (102)
19 3bs9_A Nucleolysin TIA-1 isofo 26.1 64 0.0022 20.8 3.4 38 141-178 19-68 (87)
20 1x5s_A Cold-inducible RNA-bind 25.0 1.1E+02 0.0037 20.4 4.5 38 141-178 25-74 (102)
21 2ela_A Adapter protein contain 23.9 49 0.0017 26.0 2.8 35 67-112 11-45 (175)
22 2dgt_A RNA-binding protein 30; 23.4 1.1E+02 0.0039 20.0 4.3 38 141-178 23-64 (92)
23 2e5j_A Methenyltetrahydrofolat 23.3 1.2E+02 0.0042 20.1 4.5 38 141-178 32-76 (97)
24 2hzc_A Splicing factor U2AF 65 22.8 85 0.0029 20.1 3.5 35 141-175 19-70 (87)
25 3mdf_A Peptidyl-prolyl CIS-tra 22.6 68 0.0023 20.5 3.0 37 142-178 21-69 (85)
26 2hvz_A Splicing factor, argini 22.4 1.6E+02 0.0055 19.5 5.0 39 141-179 13-58 (101)
27 2cqc_A Arginine/serine-rich sp 22.3 92 0.0031 20.4 3.6 38 141-178 28-77 (95)
28 2x1f_A MRNA 3'-END-processing 21.3 1.2E+02 0.004 20.1 4.1 38 141-178 15-64 (96)
29 2l76_A Nfatc2-interacting prot 21.0 23 0.0008 25.9 0.3 24 66-89 70-94 (95)
30 2dgp_A Bruno-like 4, RNA bindi 20.9 1.3E+02 0.0046 20.1 4.3 39 141-179 26-76 (106)
31 2dgs_A DAZ-associated protein 20.4 85 0.0029 20.9 3.2 36 141-176 23-70 (99)
32 3mab_A Uncharacterized protein 20.2 58 0.002 23.4 2.3 21 134-154 67-87 (93)
33 2ywk_A Putative RNA-binding pr 20.1 78 0.0027 20.8 2.9 38 141-178 29-77 (95)
34 1wf1_A RNA-binding protein RAL 20.0 63 0.0022 22.2 2.5 37 141-177 41-81 (110)
No 1
>3q46_A TT-ippase; inorganic pyrophosphatase, hydrolase; HET: EPE; 0.99A {Thermococcus thioreducens} SCOP: b.40.5.1 PDB: 3r6e_A* 3q3l_A 3i98_A 3q4w_A 3q9m_A* 3r5u_A 3r5v_A* 3q5v_A* 1ude_A 1twl_A
Probab=100.00 E-value=4.3e-64 Score=415.02 Aligned_cols=153 Identities=42% Similarity=0.769 Sum_probs=148.3
Q ss_pred cccCCCCCCCCCCCCeEEEE----------------------eeeccccccccccCCCCCcccCCCCCcceeEEecCccC
Q 029542 35 AHPWHDLEIGPGAPAVCNCV----------------------DRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPV 92 (192)
Q Consensus 35 ~spwhdipl~~~~p~~vn~v----------------------DR~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~p~ 92 (192)
+||||+||++.+.|++||+| ||+|++++.||+|||||||||++||||||||||++.|+
T Consensus 1 ~spwhdi~~g~~~p~~~nvvIEIP~gs~~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl~~~~~ 80 (178)
T 3q46_A 1 MNPFHELEPGPEVPEVVYALIEIPKGSRNKYELDKATGLLKLDRVLYSPFFYPVDYGIIPQTWYDDGDPFDIMVIMREPV 80 (178)
T ss_dssp CCTTTTSCSCSBTTTBCCCEEEECTTCCEEEEECTTTSCEEEEEECSSSCCCSSEEEECTTCCBTTTBCCEEEECCSSCC
T ss_pred CCccccCCCCCCCCCEEEEEEEECCCCCeeEEECCCCCCEEEeecccCCCCCCcccccCCCccCCCCCeeEEEEEcCCCC
Confidence 68999999999999999999 89999999999999999999999999999999999999
Q ss_pred CCeeEEEEEEeEEEEeeeCCCCCceEEEEecCCCCcCCCCCCCCCChhHHHHHHHHHHHhhcCCCceeEeccccCHHHHH
Q 029542 93 LPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNENKKVDVEDFLPAEAAI 172 (192)
Q Consensus 93 ~~G~v~~vrviGvl~miD~ge~D~KiIaV~~~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~legK~v~~~~~~~~~~A~ 172 (192)
.|||+++|||||+|+|+|+||+|||||||+++||+|++|+|++|||++++++|+|||++||.+|||++++.+|.++++|+
T Consensus 81 ~pG~vi~~r~iGvl~m~Dege~D~KiiaV~~~Dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~legK~v~~~g~~~~~~A~ 160 (178)
T 3q46_A 81 YPLTIIEARPIGIMKMEDSGDKDWKVLAVPVEDPYFNDWKDISDVPKAFLDEIAHFFQRYKELQGKTTKIEGWGNAEEAK 160 (178)
T ss_dssp CTTCBC-CEEEEEEEEEETTEECCEEEEECTTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTGGGTCCEEEEEEEEHHHHH
T ss_pred CCceEEEEEEEEEEEeecCCCccceEEEeeCCCccccccCChHHCCHHHHHHHHHHHHHhcCcCCCceEeccccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 029542 173 EAIKYSMDLYASYIV 187 (192)
Q Consensus 173 ~vI~~~~~~y~~~~~ 187 (192)
++|++|+++|++++.
T Consensus 161 ~~I~~~~~~~~~~~~ 175 (178)
T 3q46_A 161 REILRAIEMYKEKFG 175 (178)
T ss_dssp HHHHHHHHHHHHC-C
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998764
No 2
>3gvf_A Inorganic pyrophosphatase; structural genomics, hydrolase, S structural genomics center for infectious disease, ssgcid; HET: PGE; 1.75A {Burkholderia pseudomallei 1710B} PDB: 3d63_A* 3eiy_A 3ej0_A* 3ej2_A* 3eiz_A*
Probab=100.00 E-value=7.3e-62 Score=406.67 Aligned_cols=156 Identities=35% Similarity=0.592 Sum_probs=145.7
Q ss_pred CCCCcccccCCCCCCCCCCCCeEEEE-----------------------eeeccccccccccCCCCCcccCCCCCcceeE
Q 029542 29 SHRSVAAHPWHDLEIGPGAPAVCNCV-----------------------DRVLYSSVVYPHNYGFIPRTICEDSDPMDVL 85 (192)
Q Consensus 29 ~~~~~~~spwhdipl~~~~p~~vn~v-----------------------DR~l~~~~~yP~NYGfIP~T~~~DgDPLDvl 85 (192)
+.++..+|+||+||++++.|+.||+| ||+|++++.||+|||||||||++||||||||
T Consensus 15 ~~~g~~~m~~~~i~~g~~~p~~vnvvIEIP~gs~~~KyE~dk~~g~i~~DR~l~s~~~YP~NYGfIP~Tl~~DgDPLDvl 94 (196)
T 3gvf_A 15 QTQGPGSMSFSNVPAGKDLPQDFNVIIEIPAQSEPVKYEADKALGLLVVDRFIGTGMRYPVNYGFIPQTLSGDGDPVDVL 94 (196)
T ss_dssp --------CGGGSCSCSBTTTBEEEEEEECTTCCSEEEEEETTTTEEEEEEECTTCCCCSSEEEECTTCCCTTSSCCEEE
T ss_pred cccCCCCCchhhCCCCCCCCCEEEEEEEecCCCCceEEEEecCCCCEEEEeEcCCCccCCcccccccCccCCCCCceEEE
Confidence 45788999999999999999999999 8999999999999999999999999999999
Q ss_pred EecCccCCCeeEEEEEEeEEEEeeeCCCCCceEEEEecCC--CCcCCCCCCCCCChhHHHHHHHHHHHhhcCC-CceeEe
Q 029542 86 VLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADD--PEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDV 162 (192)
Q Consensus 86 vl~~~p~~~G~v~~vrviGvl~miD~ge~D~KiIaV~~~d--p~~~~i~di~Dl~~~~l~~i~~fF~~YK~le-gK~v~~ 162 (192)
||++.|++|||+++|||||+|+|+|+||.|||||||+++| |+|++|+|++|||++++++|+|||++||.+| ||++++
T Consensus 95 vl~~~p~~pG~vi~~r~iGvl~M~Dege~D~KIIaVp~~d~~p~~~~i~di~dlp~~~l~~I~~fF~~YK~le~gK~v~v 174 (196)
T 3gvf_A 95 VITPFPLLAGSVVRARALGMLKMTDESGVDAKLVAVPHDKVCPMTANLKSIDDVPAYLKDQIKHFFEQYKALEKGKWVKV 174 (196)
T ss_dssp ECCSSCCCTTCEEEEEEEEEEEEEETTEEEEEEEEEECTTTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEE
T ss_pred EecCCccCCeeEEEEEEEEEEEEecCCCcccEEEEEecCCcCchhhhcCchhhCCHHHHHHHHHHHHHhcCcCCCCeEEe
Confidence 9999999999999999999999999999999999999998 9999999999999999999999999999999 999999
Q ss_pred ccccCHHHHHHHHHHHHHHHHH
Q 029542 163 EDFLPAEAAIEAIKYSMDLYAS 184 (192)
Q Consensus 163 ~~~~~~~~A~~vI~~~~~~y~~ 184 (192)
.+|.++++|+++|++|+++|++
T Consensus 175 ~gw~~~~~A~~~I~~~~~~y~~ 196 (196)
T 3gvf_A 175 EGWDGIDAAHKEITDGVANFKK 196 (196)
T ss_dssp EEEECHHHHHHHHHHHHHHHTC
T ss_pred ccCcCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999964
No 3
>3fq3_A Inorganic pyrophosphatase:bacterial/archaeal INOR pyrophosphatase; ssgcid, inorganic phosphatase; 1.90A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3sw5_A
Probab=100.00 E-value=1.4e-61 Score=405.22 Aligned_cols=156 Identities=35% Similarity=0.619 Sum_probs=146.1
Q ss_pred CCCCcccccCCCCCCCCCCCCeEEEE-----------------------eeeccccccccccCCCCCcccCCCCCcceeE
Q 029542 29 SHRSVAAHPWHDLEIGPGAPAVCNCV-----------------------DRVLYSSVVYPHNYGFIPRTICEDSDPMDVL 85 (192)
Q Consensus 29 ~~~~~~~spwhdipl~~~~p~~vn~v-----------------------DR~l~~~~~yP~NYGfIP~T~~~DgDPLDvl 85 (192)
+..+..+|+||+||++++.|++||+| ||++++++.||+|||||||||++||||||||
T Consensus 15 ~~~g~~im~~~~ip~g~~~p~~vnvvIEIP~g~s~~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPLDvl 94 (197)
T 3fq3_A 15 QTQGPGSMNIDAISIGSNPPEDVNVIIEVPVGGQPIKYEMDKKAGALIVDRFLYTPMTYPGNYGFVPHTLSEDGDPIDVL 94 (197)
T ss_dssp -------CCGGGSCSCSSTTSCEEEEEEECTTCCSEEEEEETTTTEEEEEEECCSSBCCSSEEEECTTCCCTTSSCCEEE
T ss_pred ccCCCCcCCHHHCCCCCCCCCEEEEEEEecCCCCCEeEEEecCCCCEEEEeecCCCCcCCcccccccCcccCCCCceEEE
Confidence 34778899999999999999999999 8999999999999999999999999999999
Q ss_pred EecCccCCCeeEEEEEEeEEEEeeeCCCCCceEEEEecC--CCCcCCCCCCCCCChhHHHHHHHHHHHhhcCC-CceeEe
Q 029542 86 VLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDV 162 (192)
Q Consensus 86 vl~~~p~~~G~v~~vrviGvl~miD~ge~D~KiIaV~~~--dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le-gK~v~~ 162 (192)
||++.|++|||+++|||||+|+|+|+||.|||||||+++ ||+|++|+|++|||++++++|+|||++||.+| ||++++
T Consensus 95 vl~~~p~~pG~vi~~r~iGvl~MiDege~D~KIIaVp~~~~dp~~~~i~di~Dlp~~~l~~I~~fF~~YK~le~~K~v~v 174 (197)
T 3fq3_A 95 VCNTRPLIPGCVINVRPIGVLVMEDNSGKDEKIIAVPSPHLTRRYEKIHDYTDMPEITLKQIAHFFEHYKDLEPGKWVKI 174 (197)
T ss_dssp ECCSSCCCTTCEEEEEEEEEEEEEETTEEEEEEEEEECTTTCSTTTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEE
T ss_pred EEcCCCCCCceEEEEEEEEEEEEecCCCCccEEEEEECCCCCchhcccCchHHCCHHHHHHHHHHHHHhcCcCCCCeEEe
Confidence 999999999999999999999999999999999999999 89999999999999999999999999999999 899999
Q ss_pred ccccCHHHHHHHHHHHHHHHHH
Q 029542 163 EDFLPAEAAIEAIKYSMDLYAS 184 (192)
Q Consensus 163 ~~~~~~~~A~~vI~~~~~~y~~ 184 (192)
.+|.++++|+++|++|+++|++
T Consensus 175 ~~~~~~~~A~~~I~~~~~~~~~ 196 (197)
T 3fq3_A 175 GDWGDEDYARKFIVEAIERAKG 196 (197)
T ss_dssp CCCBCHHHHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999975
No 4
>2prd_A Pyrophosphate phosphohydrolase; 2.00A {Thermus thermophilus} SCOP: b.40.5.1
Probab=100.00 E-value=1.5e-61 Score=398.55 Aligned_cols=149 Identities=40% Similarity=0.675 Sum_probs=146.5
Q ss_pred ccCCCCCCCCCCCCeEEEE----------------------eeeccccccccccCCCCCcccCCCCCcceeEEecCccCC
Q 029542 36 HPWHDLEIGPGAPAVCNCV----------------------DRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVL 93 (192)
Q Consensus 36 spwhdipl~~~~p~~vn~v----------------------DR~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~p~~ 93 (192)
||||+||++++.|+.||+| ||++++++.||+|||||||||++||||||||||++.|+.
T Consensus 1 ~~~h~ip~~~~~p~~~nvvIEIP~gs~~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl~~~p~~ 80 (174)
T 2prd_A 1 ANLKSLPVGDKAPEVVHMVIEVPRGSGNKYEYDPDLGAIKLDRVLPGAQFYPGDYGFIPSTLAEDGDPLDGLVLSTYPLL 80 (174)
T ss_dssp CCGGGSCCCTTTTTEEEEEEEECTTCCEEEEEETTTTEEEEEEECSSSCCCSSEEEECSSCCCTTSSCCEEEEECSSCCC
T ss_pred CCcccCCCCCCCCCEEEEEEEecCCCCeEEEEecCCCCEEEeeecCCCCcCCcccccccCcccCCCCceEEEEECCCCCC
Confidence 7999999999999999999 899999999999999999999999999999999999999
Q ss_pred CeeEEEEEEeEEEEeeeCCCCCceEEEEecCCCCcCCCCCCCCCChhHHHHHHHHHHHhhcCC---CceeEeccccCHHH
Q 029542 94 PGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE---NKKVDVEDFLPAEA 170 (192)
Q Consensus 94 ~G~v~~vrviGvl~miD~ge~D~KiIaV~~~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le---gK~v~~~~~~~~~~ 170 (192)
||++++|||||+|+|+|+||.|||||||+++||+|++|+|++|||++++++|+|||++||.+| ||++++.+|.++++
T Consensus 81 pG~vi~~r~iGvl~m~Dege~D~KiiaV~~~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le~k~gK~v~~~gw~~~~~ 160 (174)
T 2prd_A 81 PGVVVEVRVVGLLLMEDEKGGDAKVIGVVAEDQRLDHIQDIGDVPEGVKQEIQHFFETYKALEAKKGKWVKVTGWRDRKA 160 (174)
T ss_dssp TTCEEEEEEEEEEEEEESSCEEEEEEEEETTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTGGGGGGTCCEEEEEEECHHH
T ss_pred CceEEEEEEEEEEEEecCCCCccEEEEEECCCcchhhcCChHHCCHHHHHHHHHHHHHhcCccccCCCceEECcccCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 029542 171 AIEAIKYSMDLYAS 184 (192)
Q Consensus 171 A~~vI~~~~~~y~~ 184 (192)
|+++|++|+++|++
T Consensus 161 A~~~I~~~~~~~~~ 174 (174)
T 2prd_A 161 ALEEVRACIARYKG 174 (174)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999974
No 5
>3ld3_A Inorganic pyrophosphatase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.75A {Anaplasma phagocytophilum} PDB: 3lo0_A
Probab=100.00 E-value=6e-61 Score=401.92 Aligned_cols=156 Identities=37% Similarity=0.577 Sum_probs=142.7
Q ss_pred CCCCcccccCCCCCCCCCCCCeEEEE-----------------------eeeccccccccccCCCCCcccCCCCCcceeE
Q 029542 29 SHRSVAAHPWHDLEIGPGAPAVCNCV-----------------------DRVLYSSVVYPHNYGFIPRTICEDSDPMDVL 85 (192)
Q Consensus 29 ~~~~~~~spwhdipl~~~~p~~vn~v-----------------------DR~l~~~~~yP~NYGfIP~T~~~DgDPLDvl 85 (192)
+..+..+|+||+||++++.|+.||+| ||+|++++.||+|||||||||++||||||||
T Consensus 15 ~~~g~~~m~~~~i~~g~~~p~~vnvvIEIP~gs~~~KyE~dk~~G~l~~DR~l~~~~~YP~NYGfIP~Tl~~DGDPLDvl 94 (199)
T 3ld3_A 15 QTQGPGSMNLDDIGSGSNAPEEVNVVIEVSQDSHPVKYEFDEKNGALWVDRFLPTAMYYPCNYGFIPNTIAGDGDPVDVL 94 (199)
T ss_dssp -----------CCCSCTTTTTSEEEEEEECTTCCSEEEEECTTTCCEEEEEECSSSBCCSSEEEECTTCCCTTSSCCEEE
T ss_pred ccCCCccCChHHCCCCCCCCCEEEEEEEecCCCCCEEEEEecCCCCEEEEEEcCCCCcCCcccccccccccCCCCceEEE
Confidence 34677899999999999999999999 8999999999999999999999999999999
Q ss_pred EecCccCCCeeEEEEEEeEEEEeeeCCCCCceEEEEecC--CCCcCCCCCCCCCChhHHHHHHHHHHHhhcCC-CceeEe
Q 029542 86 VLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDV 162 (192)
Q Consensus 86 vl~~~p~~~G~v~~vrviGvl~miD~ge~D~KiIaV~~~--dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le-gK~v~~ 162 (192)
||++.|++|||+++|||||+|+|+|+||.|||||||+++ ||+|++|+|++|||++++++|+|||++||.+| ||++++
T Consensus 95 vl~~~p~~pG~vi~vr~IGvl~MiDege~D~KIIaVp~~~~dp~~~~i~di~Dlp~~~l~~I~~fF~~YK~le~gK~v~v 174 (199)
T 3ld3_A 95 VLARFPVMPGAVICVRPVGVLMMNDEKGEDAKVLAVPATKVDQYYGNIVNYSDLPSSFLDSISHFFSFYKKLEKDKFVSV 174 (199)
T ss_dssp ECCSSCCCTTCEEEEEEEEEEEEEETTEECCEEEEEECTTTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEE
T ss_pred EecCCCCCCceEEEEEEEEEEEEecCCCCcceEEEEECCCCCccccccCchHHCCHHHHHHHHHHHHHhcCcCCCceEEe
Confidence 999999999999999999999999999999999999999 99999999999999999999999999999999 799999
Q ss_pred ccccCHHHHHHHHHHHHHHHHH
Q 029542 163 EDFLPAEAAIEAIKYSMDLYAS 184 (192)
Q Consensus 163 ~~~~~~~~A~~vI~~~~~~y~~ 184 (192)
.+|.++++|+++|++|+++|++
T Consensus 175 ~gw~~~~~A~~~I~~~~~~~~~ 196 (199)
T 3ld3_A 175 GCWQDAASAKELIRSAIIAAKK 196 (199)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999986
No 6
>2au7_A Inorganic pyrophosphatase; hydrolase, mutant; 1.05A {Escherichia coli} PDB: 1i40_A 1i6t_A 1igp_A 1obw_A 2au6_A 2au8_A 2au9_A 2auu_A 1mjy_A 1faj_A 1ino_A 1ipw_A 1jfd_A 2eip_A 1mjz_A 1mjx_A 1mjw_A 3i4q_A*
Probab=100.00 E-value=4.7e-60 Score=390.02 Aligned_cols=148 Identities=38% Similarity=0.616 Sum_probs=145.8
Q ss_pred cCCCCCCCCCCCCeEEEE-----------------------eeeccccccccccCCCCCcccCCCCCcceeEEecCccCC
Q 029542 37 PWHDLEIGPGAPAVCNCV-----------------------DRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVL 93 (192)
Q Consensus 37 pwhdipl~~~~p~~vn~v-----------------------DR~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~p~~ 93 (192)
+||+||++++.|..||+| ||+|++++.||+|||||||||++||||||||||++.|+.
T Consensus 1 ~~~~ip~~~~~p~~~nvvIEIP~gs~p~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl~~~p~~ 80 (175)
T 2au7_A 1 SLLNVPAGKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDQFMSTAMFYPCNYGYINHTLSLDGDPVDVLVPTPYPLQ 80 (175)
T ss_dssp CGGGCCSCSBTTTBEEEEEEECTTCCSEEEEECTTTCCEEEEEECSSSCCCSSEEEECTTCCCTTSSCCEEEECCSSCCC
T ss_pred CcccCCCCCCCCCEEEEEEEecCCCCceeEEEecCCCCEEEeeecCCCCcCCcCcCccCCccCCCCCceEEEEECCCCCC
Confidence 699999999999999999 999999999999999999999999999999999999999
Q ss_pred CeeEEEEEEeEEEEeeeCCCCCceEEEEecC--CCCcCCCCCCCCCChhHHHHHHHHHHHhhcCC-CceeEeccccCHHH
Q 029542 94 PGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAEA 170 (192)
Q Consensus 94 ~G~v~~vrviGvl~miD~ge~D~KiIaV~~~--dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le-gK~v~~~~~~~~~~ 170 (192)
|||+++|||||+|+|+|+||.|||||||+++ ||+|++|+|++|||++++++|+|||++||.+| ||++++.+|.++++
T Consensus 81 pG~vi~~r~iGvl~m~Deg~~D~KiiaV~~~k~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le~gK~v~v~gw~~~~~ 160 (175)
T 2au7_A 81 PGSVTRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEGWENAEA 160 (175)
T ss_dssp TTCEEEEEEEEEEEEEETTEECCEEEEEECTTTCSTTTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEEECHHH
T ss_pred CceEEEEEEEEEEEeecCCCCccEEEEEeCCCCCcchhhCCChHHCCHHHHHHHHHHHHHhhCccCCCCeEEccccCHHH
Confidence 9999999999999999999999999999999 99999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 029542 171 AIEAIKYSMDLYAS 184 (192)
Q Consensus 171 A~~vI~~~~~~y~~ 184 (192)
|+++|++|+++|++
T Consensus 161 A~~~I~~~~~~~~~ 174 (175)
T 2au7_A 161 AKAEIVASFERAKN 174 (175)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999986
No 7
>1e9g_A Ppase, inorganic pyrophosphatase; pyrophosphate phosphohydrolase, hydrolase, manganese; HET: PO4; 1.15A {Saccharomyces cerevisiae} SCOP: b.40.5.1 PDB: 1e6a_A* 1wgi_A 1wgj_A 2ihp_A* 8prk_A 2ik6_A 2ik2_A 2ik4_A 117e_A 2ik1_A* 2ik9_A 2ik0_A 2ik7_A 1m38_A 1ypp_A 1huk_A 1huj_A 1pyp_A
Probab=100.00 E-value=3.3e-61 Score=421.97 Aligned_cols=176 Identities=26% Similarity=0.416 Sum_probs=164.6
Q ss_pred CCCCCCCCCcchhhcccCCCCcccccCCCCCCCCCCC-CeEEEE---------------------------------eee
Q 029542 12 NSGGPPVALNERILSSMSHRSVAAHPWHDLEIGPGAP-AVCNCV---------------------------------DRV 57 (192)
Q Consensus 12 ~~~~~~~~~~~r~~~~~~~~~~~~spwhdipl~~~~p-~~vn~v---------------------------------DR~ 57 (192)
.++|+++|++||++ +.+.+..+||||+||++++.| .+|||| ||.
T Consensus 5 ~~~G~~~t~~~r~~--~~~~g~~~sp~hdIp~~~~~~~~~~nvVIEIP~gs~~KyEidk~~~~nPIkqd~k~G~lr~dr~ 82 (286)
T 1e9g_A 5 RQIGAKNTLEYKVY--IEKDGKPVSAFHDIPLYADKENNIFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRN 82 (286)
T ss_dssp EEEEETTSTTCEEE--EEETTEEECTTTTSCSEEETTTTEEEEEEEECTTCCBCEEECTTSTTCCEEECEETTEECBCCE
T ss_pred eeecCCCCcceEEE--EEeCCeecCchhhCCCCCCCCCCEEEEEEEECCCCCeEEEEccCCCCCcchhhhcCCcEEEEec
Confidence 46899999999998 455688999999999998864 899998 677
Q ss_pred ccccccccccCCCCCccc------------CCCCCcceeEEecCccCCCeeEEEEEEeEEEEeeeCCCCCceEEEEecCC
Q 029542 58 LYSSVVYPHNYGFIPRTI------------CEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADD 125 (192)
Q Consensus 58 l~~~~~yP~NYGfIP~T~------------~~DgDPLDvlvl~~~p~~~G~v~~vrviGvl~miD~ge~D~KiIaV~~~d 125 (192)
+|+++.||+||||||||| +|||||||||||++.|+.||++++|||||+|+|+|+||+|||||||+++|
T Consensus 83 l~~~~~YP~NYGfIPqTledp~~~~~~t~~~gDgDPLDVlvi~~~p~~pG~vi~vr~IGvl~MiDege~D~KIIaV~~~D 162 (286)
T 1e9g_A 83 CFPHHGYIHNYGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIND 162 (286)
T ss_dssp ETTCCSCSSEEEECSSCCCCTTSEETTTTEEBCSSCCEEEECCSSCCCTTCEEEEEEEEEECEEETTEECCEEEEEETTS
T ss_pred cCCCCCCccCcccCcccccCcccccccCCCCCCCCceEEEEecCccCCCccEEEEEEeEEEEeccCCCCCceEEEEeCCC
Confidence 889999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCCCCCCCh---hHHHHHHHHHHHhhcCCCcee---Ee-ccccCHHHHHHHHHHHHHHHHHHHHHH
Q 029542 126 PEFRHYKDIKELPP---HRLAEIRRFFEDYKKNENKKV---DV-EDFLPAEAAIEAIKYSMDLYASYIVES 189 (192)
Q Consensus 126 p~~~~i~di~Dl~~---~~l~~i~~fF~~YK~legK~v---~~-~~~~~~~~A~~vI~~~~~~y~~~~~~~ 189 (192)
|+|++|+|++||++ +++++|+|||++||.+|||++ .+ ++|.++++|+++|++|+++|++++.++
T Consensus 163 p~~~~i~di~Dl~~~~p~~l~~i~~fF~~YK~leGK~~n~~~~~~~~~~~~~A~~vI~~~~~~~~~l~~~~ 233 (286)
T 1e9g_A 163 PLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIAGK 233 (286)
T ss_dssp TTGGGCCSHHHHHHHSTTHHHHHHHHHHHTTGGGTCCCCEEGGGGCCBCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccCCCHHHhchhhHHHHHHHHHHHHHhcCcCCCCcceeEecCcCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999976 899999999999999999984 34 799999999999999999999988754
No 8
>2bqx_A Inorganic pyrophosphatase; hydrolase; 1.90A {Helicobacter pylori} PDB: 1ygz_A 2bqy_A
Probab=100.00 E-value=1e-59 Score=387.43 Aligned_cols=148 Identities=39% Similarity=0.655 Sum_probs=139.4
Q ss_pred ccCCCCCCCCCCCCeEEEE----------------------eeeccccccccccCCCCCcccCCCCCcceeEEecCccCC
Q 029542 36 HPWHDLEIGPGAPAVCNCV----------------------DRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVL 93 (192)
Q Consensus 36 spwhdipl~~~~p~~vn~v----------------------DR~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~p~~ 93 (192)
++||+||++++ |+.||+| ||++++++.||+|||||||||++||||||||||++.|+.
T Consensus 1 m~~~~ip~~~~-p~~~nvvIEIP~gs~~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl~~~p~~ 79 (173)
T 2bqx_A 1 MNLEKLEVSHD-ADSLCVVIEISKHSNIKYELDKESGALMVDRVLYGAQNYPANYGFVPNTLGSDGDPVDALVLSDVAFQ 79 (173)
T ss_dssp ------CCCEE-TTEEEEEEEECTTCSEEEEECTTTCCEEEEEECSSSCCCSSEEEECSSCCCTTSSCCEEEECCSSCCC
T ss_pred CCcccCCCCCC-CCeEEEEEEECCCCCeEEEEecCCCCEEEeeecCCCCcCcccccccccccCCCCCceEEEEECCCCCC
Confidence 38999999999 9999999 899999999999999999999999999999999999999
Q ss_pred CeeEEEEEEeEEEEeeeCCCCCceEEEEecC--CCCcCCCCCCCCCChhHHHHHHHHHHHhhcCC-CceeEeccccCHHH
Q 029542 94 PGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAEA 170 (192)
Q Consensus 94 ~G~v~~vrviGvl~miD~ge~D~KiIaV~~~--dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le-gK~v~~~~~~~~~~ 170 (192)
|||+++|||||+|+|+|+||.|||||||+++ ||+|++++|++|||++++++|+|||++||.+| ||++++.+|.++++
T Consensus 80 ~G~vi~~r~iGvl~m~D~g~~D~KiiaV~~~k~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le~gK~v~~~g~~~~~~ 159 (173)
T 2bqx_A 80 AGSVVKARLVGVLNMEDESGMDEKLIALPIDKIDPTHSYVKDIDDLSKHTLDKIKHFFETYKDLEPNKWVKVKGFENKES 159 (173)
T ss_dssp TTCEEEEEEEEEEEEEETTEEEEEEEEEECTTTCCTTTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEEEEHHH
T ss_pred CceEEEEEEEEEEEeccCCCCccEEEEEeCCCCCcchhhcCChhHCCHHHHHHHHHHHHHhccccCCCceeeCcCcCHHH
Confidence 9999999999999999999999999999999 99999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 029542 171 AIEAIKYSMDLYAS 184 (192)
Q Consensus 171 A~~vI~~~~~~y~~ 184 (192)
|+++|++|+++|++
T Consensus 160 A~~~I~~~~~~~~~ 173 (173)
T 2bqx_A 160 AIKVLEKAIKAYQG 173 (173)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999964
No 9
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=100.00 E-value=3.3e-59 Score=384.35 Aligned_cols=145 Identities=39% Similarity=0.614 Sum_probs=141.8
Q ss_pred ccCCCCCCCCCCCCeEEEE-----------------------eeeccccccccccCCCCCcccCCCCCcceeEEecCccC
Q 029542 36 HPWHDLEIGPGAPAVCNCV-----------------------DRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPV 92 (192)
Q Consensus 36 spwhdipl~~~~p~~vn~v-----------------------DR~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~p~ 92 (192)
++||+||++++ |+.||+| ||++++++.||+|||||||||++||||||||||++.|+
T Consensus 2 m~~~~ip~~~~-p~~~nvvIEIP~gs~p~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl~~~p~ 80 (173)
T 3d53_A 2 MFIKKIKAKAN-NNEINVIIEIPMNSGPIKYEFDKESGALFVDRFMQTTMSYPCNYGFIPDTLSNDGDPVDVLVVAHHPV 80 (173)
T ss_dssp -CGGGSCSCSS-TTCEEEEEEECTTCCSEEEEECTTTCCEEEEEECCSSCCCSSEEEECTTCCCTTSSCCEEEECCSSCC
T ss_pred CchhhCCCCCC-CCeEEEEEEeCCCCCceeEEEecCCCCEEEeeecCCCCcCCcccchhhCCccCCCCceEEEEECCCcc
Confidence 48999999999 9999999 89999999999999999999999999999999999999
Q ss_pred CCeeEEEEEEeEEEEeeeCCCCCceEEEEecC--CCCcCCCCCCCCCChhHHHHHHHHHHHhhcCC-CceeEeccccCHH
Q 029542 93 LPGSFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAE 169 (192)
Q Consensus 93 ~~G~v~~vrviGvl~miD~ge~D~KiIaV~~~--dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le-gK~v~~~~~~~~~ 169 (192)
.|||+++|||||+|+|+|+||.|||||||+++ ||+|++|+|++|||++++++|+|||++||.+| ||++++.+|.+++
T Consensus 81 ~~G~vi~~r~iGvl~m~Dege~D~KiiaV~~~k~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le~gK~v~v~gw~~~~ 160 (173)
T 3d53_A 81 VPGSVIKCRAIGVLMMEDESGLDEKIIAVPTSKLDITFDHIKELDDLCEMLKKRIVHFFEHYKDLEKGKWVKVTGWGDKV 160 (173)
T ss_dssp CTTCEEEEEEEEEEEEEETTEEEEEEEEEECTTTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEEECHH
T ss_pred CCceEEEEEEEEEEEEccCCCccceEEEEeCCCCCcchhhcCChhHCCHHHHHHHHHHHHHHcCccCCCcEEEccCcCHH
Confidence 99999999999999999999999999999999 99999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHH
Q 029542 170 AAIEAIKYSMDL 181 (192)
Q Consensus 170 ~A~~vI~~~~~~ 181 (192)
+|+++|++|+++
T Consensus 161 ~A~~~I~~~~~~ 172 (173)
T 3d53_A 161 KAETLIKEGIDR 172 (173)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 999999999974
No 10
>3tr4_A Inorganic pyrophosphatase; central intermediary metabolism, hydrolase; HET: MSE; 2.00A {Coxiella burnetii} SCOP: b.40.5.0
Probab=100.00 E-value=1.1e-58 Score=382.68 Aligned_cols=145 Identities=37% Similarity=0.609 Sum_probs=139.8
Q ss_pred CCCCCCCCCCCeEEEE-----------------------eeeccccccccccCCCCCcccCCCCCcceeEEecCccCCCe
Q 029542 39 HDLEIGPGAPAVCNCV-----------------------DRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPG 95 (192)
Q Consensus 39 hdipl~~~~p~~vn~v-----------------------DR~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~p~~~G 95 (192)
|+||++++. +.||+| ||++++++.||+|||||||||++||||||||||++.|+.||
T Consensus 6 h~ip~g~~~-~~vnvvIEIP~gs~~~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl~~~p~~pG 84 (178)
T 3tr4_A 6 FLVSAGKGI-DDFNVIIEIPANGGEVKYEYDKELGFLTVDRFMPTSMRYPCNYGFVPSTLAQDGDPLDVLVLTPVPVQPG 84 (178)
T ss_dssp --CCCEEET-TEEEEEEEECTTCCSEEEEEETTTTEEEEEEECCSSBCCSSEEEECTTCCCTTSSCCEEEECCSSCCCTT
T ss_pred ccCCCCCCC-CEEEEEEEecCCCCcEEEEEecCCCcEEEEEecCcCccCCccccccCCcccCCCCceEEEEECCCCCCCe
Confidence 999999887 999998 89999999999999999999999999999999999999999
Q ss_pred eEEEEEEeEEEEeeeCCCCCceEEEEecC--CCCcCCCCCCCCCChhHHHHHHHHHHHhhcCC-CceeEeccccCHHHHH
Q 029542 96 SFLRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAEAAI 172 (192)
Q Consensus 96 ~v~~vrviGvl~miD~ge~D~KiIaV~~~--dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le-gK~v~~~~~~~~~~A~ 172 (192)
|+++|||||+|+|+|+||+|||||||+++ ||+|++|+|++|||++++++|+|||++||.+| ||++++.+|.++++|+
T Consensus 85 ~vi~~r~iGvl~m~Dege~D~KiIaVp~~~~dp~~~~i~di~dl~~~~l~~i~~fF~~YK~le~gK~v~~~g~~~~~~A~ 164 (178)
T 3tr4_A 85 VLMRVRALGIMKMEDEAGEDSKVLAVPVVKACRAYEAIQSLKDISSLLLDAISHFFERYKDLEPNKWAKVKGWEDKEAAK 164 (178)
T ss_dssp CEEEEEEEEEEEEEETTEECCEEEEEECTTTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEEECHHHHH
T ss_pred eEEEEEEEEEEEeccCCCCcceEEEEEcCCCCchhhhcCchhhCCHHHHHHHHHHHHHHcCcCCCceeEeccCcCHHHHH
Confidence 99999999999999999999999999999 89999999999999999999999999999999 6999999999999999
Q ss_pred HHHHHHHHHHHH
Q 029542 173 EAIKYSMDLYAS 184 (192)
Q Consensus 173 ~vI~~~~~~y~~ 184 (192)
++|++|+++|++
T Consensus 165 ~~I~~~~~~~~~ 176 (178)
T 3tr4_A 165 KEFEASIVRFKE 176 (178)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999999986
No 11
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase); thermostability, magnesium, hydrolase; 2.70A {Sulfolobus acidocaldarius} SCOP: b.40.5.1
Probab=100.00 E-value=6.3e-58 Score=376.76 Aligned_cols=145 Identities=43% Similarity=0.722 Sum_probs=139.7
Q ss_pred CCCCCCCCCCeEEEE----------------------eeeccccccccccCCCCCcccCCCCCcceeEEecCccCCCeeE
Q 029542 40 DLEIGPGAPAVCNCV----------------------DRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSF 97 (192)
Q Consensus 40 dipl~~~~p~~vn~v----------------------DR~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~p~~~G~v 97 (192)
+||.+++.|+.||+| ||++++++.||+|||||||||++||||||||||++.|+.|||+
T Consensus 2 ~i~~g~~~p~~~nvvIEIP~gs~~KyE~dk~~g~l~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl~~~p~~~G~v 81 (173)
T 1qez_A 2 KLSPGKNAPDVVNVLVEIPQGSNIKYEYDDEEGVIKVDRVLYTSMNYPFNYGFIPGTLEEDGDPLDVLVITNYQLYPGSV 81 (173)
T ss_dssp CCCSCTTTTTSEEEEEEECTTCCEEEEEETTTTEEEEEEECSSSBCCSSEEEECTTCCCTTSSCCEEEECCSSCCCTTCE
T ss_pred CcCCCCCCCCeEEEEEEECCCCCeEEEEecCCCCEEEEeecCCCCcCCccccccccccCCCCCceEEEEECCCCCCCccE
Confidence 467777778889998 8999999999999999999999999999999999999999999
Q ss_pred EEEEEeEEEEeeeCCCCCceEEEEecC--CCCcCCCCCCCCCChhHHHHHHHHHHHhhcCC-CceeEeccccCHHHHHHH
Q 029542 98 LRCRAIGLMPMIDQGEKDDKIIAVCAD--DPEFRHYKDIKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAEAAIEA 174 (192)
Q Consensus 98 ~~vrviGvl~miD~ge~D~KiIaV~~~--dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le-gK~v~~~~~~~~~~A~~v 174 (192)
++|||||+|+|+|+||.|||||||+++ ||+|++|+|++|||++++++|+|||++||.+| ||++++.+|.++++|+++
T Consensus 82 i~~r~iGvl~m~Dege~D~KiiaV~~~k~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le~gK~v~~~gw~~~~~A~~~ 161 (173)
T 1qez_A 82 IEVRPIGILYMKDEEGEDAKIVAVPKDKTDPSFSNIKDINDLPQATKNKIVHFFEHYKELEPGKYVKISGWGSATEAKNR 161 (173)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEECTTTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEEECHHHHHHH
T ss_pred EEEEEEEEEEeecCCCcccEEEEEeCCCCCcchhhcCChHHCCHHHHHHHHHHHHHhccccCCCceEEccccCHHHHHHH
Confidence 999999999999999999999999999 99999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHH
Q 029542 175 IKYSMDLYAS 184 (192)
Q Consensus 175 I~~~~~~y~~ 184 (192)
|++|+++|++
T Consensus 162 I~~~~~~~~~ 171 (173)
T 1qez_A 162 IQLAIKRVSG 171 (173)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHh
Confidence 9999999976
No 12
>1sxv_A Inorganic pyrophosphatase; structural genomics, ppase,, hydrolase; 1.30A {Mycobacterium tuberculosis} PDB: 1wcf_A 2uxs_A 4ecp_A
Probab=100.00 E-value=4.2e-56 Score=365.56 Aligned_cols=131 Identities=37% Similarity=0.759 Sum_probs=129.1
Q ss_pred EeeeccccccccccCCCCCcccCCCCCcceeEEecCccCCCeeEEEEEEeEEEEeeeCCCCCceEEEEecCCCCcCCCCC
Q 029542 54 VDRVLYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDKIIAVCADDPEFRHYKD 133 (192)
Q Consensus 54 vDR~l~~~~~yP~NYGfIP~T~~~DgDPLDvlvl~~~p~~~G~v~~vrviGvl~miD~ge~D~KiIaV~~~dp~~~~i~d 133 (192)
+||++++++.||+|||||||||++||||||||||++.|++|||+++|||||+|+|+|+||.|||||||+++||+|++|+|
T Consensus 38 ~DR~l~~~~~YP~NYGfIP~Tl~~DGDPlDvlvl~~~p~~pG~vi~~r~iGvl~m~Dege~D~KIIaVp~~Dp~~~~i~d 117 (172)
T 1sxv_A 38 LDRYLYTPMAYPTDYGFIEDTLGDDGDPLDALVLLPQPVFPGVLVAARPVGMFRMVDEHGGDDKVLCVPAGDPRWDHVQD 117 (172)
T ss_dssp CCEECSSSCCCSSEEEEETTCCCTTSSCCEEEECCSSCCCTTCEEEEEEEEEEEEEETTEECCEEEEEETTCGGGTTCCS
T ss_pred EEeecCCCCCCCcCcCccCCccCCCCCCeEEEEEcCCCcCCceEEEEEEEEEEEecCCCCCCCEEEEEeCCCCCccccCC
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHhhcCC-CceeEeccccCHHHHHHHHHHHHHHHHH
Q 029542 134 IKELPPHRLAEIRRFFEDYKKNE-NKKVDVEDFLPAEAAIEAIKYSMDLYAS 184 (192)
Q Consensus 134 i~Dl~~~~l~~i~~fF~~YK~le-gK~v~~~~~~~~~~A~~vI~~~~~~y~~ 184 (192)
++|||++++++|+|||++||.+| ||++++.+|.++++|+++|++|+++|++
T Consensus 118 i~Dlp~~~l~~I~~fF~~YK~le~gK~v~v~gw~~~~~A~~~I~~~~~~~~~ 169 (172)
T 1sxv_A 118 IGDVPAFELDAIKHFFVHYKDLEPGKFVKAADWVDRAEAEAEVQRSVERFKA 169 (172)
T ss_dssp GGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred hHHCCHHHHHHHHHHHHHhcCcCCCCeEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 9999999999999999999999999986
No 13
>1jo6_A KCNMB2, potassium large conductance calcium-activated channel, subfamily M, beta member 2..., large; helix, ION channel, cytoplasmic PART of; NMR {Synthetic} SCOP: j.89.1.1
Probab=35.49 E-value=6.4 Score=25.31 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=15.9
Q ss_pred ccccCCCCCcccC-----------CCCCccee
Q 029542 64 YPHNYGFIPRTIC-----------EDSDPMDV 84 (192)
Q Consensus 64 yP~NYGfIP~T~~-----------~DgDPLDv 84 (192)
++|+++=+++|+. .||||||+
T Consensus 2 ~~~~~~k~~~~~~~~~~R~iy~~~~dgd~~dk 33 (45)
T 1jo6_A 2 FIWTSGRTSSSYRHDEKRNIYQKIRDHDLLDK 33 (45)
T ss_dssp CCSSCCCCCCSSSSCSTTSSHHHHHHHHTTTS
T ss_pred cccccccceeeeccccccccccccccCCcccc
Confidence 4677777788773 48999996
No 14
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=32.97 E-value=39 Score=26.62 Aligned_cols=46 Identities=13% Similarity=0.236 Sum_probs=33.5
Q ss_pred eeEEecCccCCCeeEEEEEEeEEEEeeeCCCCCce---EEEEecCCCCcCCCCCCCCCCh
Q 029542 83 DVLVLMQEPVLPGSFLRCRAIGLMPMIDQGEKDDK---IIAVCADDPEFRHYKDIKELPP 139 (192)
Q Consensus 83 Dvlvl~~~p~~~G~v~~vrviGvl~miD~ge~D~K---iIaV~~~dp~~~~i~di~Dl~~ 139 (192)
+.||+++.|+.+|+.+.+|+.-. +..|. =|+|-..||. .++. ++|+
T Consensus 36 ~givFS~RPl~~~E~~~v~I~~~-------~~~wsG~l~~GvT~~dP~--~l~~--~lP~ 84 (168)
T 2yue_A 36 RAITFSARPVRINERICVKFAEI-------SNNWNGGIRFGFTSNDPV--TLEG--TLPK 84 (168)
T ss_dssp CCEEEESSCCCSSCCEEEEEEEC-------CSSSSSCCEEEEESSCGG--GTTT--CCCS
T ss_pred ceEEEECCCCcCCCEEEEEEEee-------cCCcceeEEEeeeecCHH--HcCC--CCCC
Confidence 67999999999999999998532 33344 5788888984 3442 5664
No 15
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=30.75 E-value=55 Score=21.87 Aligned_cols=38 Identities=18% Similarity=0.208 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhcC------CCceeEeccccCHHHHHHHHHHH
Q 029542 141 RLAEIRRFFEDYKKN------ENKKVDVEDFLPAEAAIEAIKYS 178 (192)
Q Consensus 141 ~l~~i~~fF~~YK~l------egK~v~~~~~~~~~~A~~vI~~~ 178 (192)
.-++|+++|..|-.. .+|.+.+..|.+.+.|.+.|+..
T Consensus 30 t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l 73 (97)
T 1why_A 30 SLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKM 73 (97)
T ss_dssp CHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHH
Confidence 356788999998533 24556667889999998877743
No 16
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=26.27 E-value=80 Score=22.23 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhhcC------------CCceeEeccccCHHHHHHHHHH
Q 029542 141 RLAEIRRFFEDYKKN------------ENKKVDVEDFLPAEAAIEAIKY 177 (192)
Q Consensus 141 ~l~~i~~fF~~YK~l------------egK~v~~~~~~~~~~A~~vI~~ 177 (192)
.-++|+++|..|-.. ..|.+.+..|.+.+.|.+.|+.
T Consensus 76 ~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 124 (140)
T 2ku7_A 76 DDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 124 (140)
T ss_dssp CHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 346789999998422 1234566788999999888764
No 17
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.25 E-value=79 Score=20.80 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhhc-CCC-----ceeEeccccCHHHHHHHHHHHH
Q 029542 141 RLAEIRRFFEDYKK-NEN-----KKVDVEDFLPAEAAIEAIKYSM 179 (192)
Q Consensus 141 ~l~~i~~fF~~YK~-leg-----K~v~~~~~~~~~~A~~vI~~~~ 179 (192)
.-++|+++|..|-. .+. |.+.+..|.+.+.|.+.|++.+
T Consensus 21 t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 65 (93)
T 2cqh_A 21 TADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLS 65 (93)
T ss_dssp CHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHHcc
Confidence 45678999999976 443 3345567899999988877543
No 18
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.24 E-value=74 Score=21.28 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhhcCC------------CceeEeccccCHHHHHHHHHHH
Q 029542 141 RLAEIRRFFEDYKKNE------------NKKVDVEDFLPAEAAIEAIKYS 178 (192)
Q Consensus 141 ~l~~i~~fF~~YK~le------------gK~v~~~~~~~~~~A~~vI~~~ 178 (192)
.-++|+++|..|-..+ .+.+.+..|.+.+.|.+.|+..
T Consensus 25 t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 74 (102)
T 2cqb_A 25 DDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 74 (102)
T ss_dssp CHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHH
T ss_pred CHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 3577899999984332 1335567889999999887643
No 19
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=26.06 E-value=64 Score=20.78 Aligned_cols=38 Identities=21% Similarity=0.179 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhhcC----------CC--ceeEeccccCHHHHHHHHHHH
Q 029542 141 RLAEIRRFFEDYKKN----------EN--KKVDVEDFLPAEAAIEAIKYS 178 (192)
Q Consensus 141 ~l~~i~~fF~~YK~l----------eg--K~v~~~~~~~~~~A~~vI~~~ 178 (192)
.-++|+++|..|-.. .| +.+.+..|.+.+.|.+.++..
T Consensus 19 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 68 (87)
T 3bs9_A 19 TTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 68 (87)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHc
Confidence 356789999988422 12 224556789999999887754
No 20
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.03 E-value=1.1e+02 Score=20.38 Aligned_cols=38 Identities=13% Similarity=0.213 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhhcCC----------C--ceeEeccccCHHHHHHHHHHH
Q 029542 141 RLAEIRRFFEDYKKNE----------N--KKVDVEDFLPAEAAIEAIKYS 178 (192)
Q Consensus 141 ~l~~i~~fF~~YK~le----------g--K~v~~~~~~~~~~A~~vI~~~ 178 (192)
.-++|+++|..|-..+ | |.+.+..|.+.+.|.+.|+..
T Consensus 25 t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 74 (102)
T 1x5s_A 25 NEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 74 (102)
T ss_dssp CHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHh
Confidence 3566899999984322 1 225566789999999888654
No 21
>2ela_A Adapter protein containing PH domain, PTB domain and leucine zipper motif 1; APPL, cell cycle; 2.00A {Homo sapiens}
Probab=23.94 E-value=49 Score=26.01 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=16.3
Q ss_pred cCCCCCcccCCCCCcceeEEecCccCCCeeEEEEEEeEEEEeeeCC
Q 029542 67 NYGFIPRTICEDSDPMDVLVLMQEPVLPGSFLRCRAIGLMPMIDQG 112 (192)
Q Consensus 67 NYGfIP~T~~~DgDPLDvlvl~~~p~~~G~v~~vrviGvl~miD~g 112 (192)
.-|.+|..|+...|++. |....||-||.+.+....
T Consensus 11 ~~~~~~~~~~~~~~~~~-----------~~~f~vkYLGs~eV~~~~ 45 (175)
T 2ela_A 11 SSGLVPRGSHMTEDSIL-----------HQLFIVRFLGSMEVKSDD 45 (175)
T ss_dssp --------------CCC-----------CEEEEEEEEEEEEECSCC
T ss_pred cCCccCCCCCCCccccc-----------cceEEEEcceEEEecCCC
Confidence 45899999998887774 578899999999886543
No 22
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.45 E-value=1.1e+02 Score=19.99 Aligned_cols=38 Identities=32% Similarity=0.288 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhhcCC----CceeEeccccCHHHHHHHHHHH
Q 029542 141 RLAEIRRFFEDYKKNE----NKKVDVEDFLPAEAAIEAIKYS 178 (192)
Q Consensus 141 ~l~~i~~fF~~YK~le----gK~v~~~~~~~~~~A~~vI~~~ 178 (192)
.-++|+.+|..|-... -+...+..|.+.+.|.+.|+..
T Consensus 23 t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l 64 (92)
T 2dgt_A 23 TNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGL 64 (92)
T ss_dssp CHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHh
Confidence 4567889999986544 2335566789999998887643
No 23
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.29 E-value=1.2e+02 Score=20.08 Aligned_cols=38 Identities=13% Similarity=0.267 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhhcCC-------CceeEeccccCHHHHHHHHHHH
Q 029542 141 RLAEIRRFFEDYKKNE-------NKKVDVEDFLPAEAAIEAIKYS 178 (192)
Q Consensus 141 ~l~~i~~fF~~YK~le-------gK~v~~~~~~~~~~A~~vI~~~ 178 (192)
.-++|+.+|..|-..+ .|.+.+..|.+.+.|.+.|+..
T Consensus 32 t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 76 (97)
T 2e5j_A 32 RVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCL 76 (97)
T ss_dssp CHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHh
Confidence 4567899999996553 2335556788999998887643
No 24
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=22.82 E-value=85 Score=20.14 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHh----h--------c-----CCCceeEeccccCHHHHHHHH
Q 029542 141 RLAEIRRFFEDY----K--------K-----NENKKVDVEDFLPAEAAIEAI 175 (192)
Q Consensus 141 ~l~~i~~fF~~Y----K--------~-----legK~v~~~~~~~~~~A~~vI 175 (192)
.-++|+++|..| - . ...|.+.+..|.+.+.|.+.+
T Consensus 19 t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~ 70 (87)
T 2hzc_A 19 TEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM 70 (87)
T ss_dssp CHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG
T ss_pred CHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH
Confidence 347789999999 2 1 112445566788999888776
No 25
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=22.61 E-value=68 Score=20.55 Aligned_cols=37 Identities=19% Similarity=0.145 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhcCC----------C--ceeEeccccCHHHHHHHHHHH
Q 029542 142 LAEIRRFFEDYKKNE----------N--KKVDVEDFLPAEAAIEAIKYS 178 (192)
Q Consensus 142 l~~i~~fF~~YK~le----------g--K~v~~~~~~~~~~A~~vI~~~ 178 (192)
-++|+++|..|-... | +...+..|.+.+.|.+.++..
T Consensus 21 ~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 69 (85)
T 3mdf_A 21 DKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 69 (85)
T ss_dssp HHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHh
Confidence 467889999984221 2 224556789999998887643
No 26
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=22.35 E-value=1.6e+02 Score=19.51 Aligned_cols=39 Identities=18% Similarity=0.156 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhcCC-------CceeEeccccCHHHHHHHHHHHH
Q 029542 141 RLAEIRRFFEDYKKNE-------NKKVDVEDFLPAEAAIEAIKYSM 179 (192)
Q Consensus 141 ~l~~i~~fF~~YK~le-------gK~v~~~~~~~~~~A~~vI~~~~ 179 (192)
.-++|+++|..|-... .|.+.+..|.+.+.|.+.|++.+
T Consensus 13 t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~ 58 (101)
T 2hvz_A 13 GKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLD 58 (101)
T ss_dssp SHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHC
Confidence 4567899999995433 24455667899999998877543
No 27
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.29 E-value=92 Score=20.35 Aligned_cols=38 Identities=18% Similarity=0.227 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhhcCC----------C--ceeEeccccCHHHHHHHHHHH
Q 029542 141 RLAEIRRFFEDYKKNE----------N--KKVDVEDFLPAEAAIEAIKYS 178 (192)
Q Consensus 141 ~l~~i~~fF~~YK~le----------g--K~v~~~~~~~~~~A~~vI~~~ 178 (192)
.-++|+++|..|-... | +.+.+..|.+.+.|.+.|+..
T Consensus 28 t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 77 (95)
T 2cqc_A 28 TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 77 (95)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHh
Confidence 4567999999984221 2 224556789999999887753
No 28
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=21.30 E-value=1.2e+02 Score=20.08 Aligned_cols=38 Identities=13% Similarity=0.091 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhhcCC----------C--ceeEeccccCHHHHHHHHHHH
Q 029542 141 RLAEIRRFFEDYKKNE----------N--KKVDVEDFLPAEAAIEAIKYS 178 (192)
Q Consensus 141 ~l~~i~~fF~~YK~le----------g--K~v~~~~~~~~~~A~~vI~~~ 178 (192)
.-++|+++|..|-... | +.+.+..|.+.+.|.+.|+..
T Consensus 15 t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 64 (96)
T 2x1f_A 15 TEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNL 64 (96)
T ss_dssp CHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 3567899999884211 2 335566789999998887643
No 29
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=20.96 E-value=23 Score=25.91 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=18.1
Q ss_pred ccCCCCCcccC-CCCCcceeEEecC
Q 029542 66 HNYGFIPRTIC-EDSDPMDVLVLMQ 89 (192)
Q Consensus 66 ~NYGfIP~T~~-~DgDPLDvlvl~~ 89 (192)
.|=---|++|. +|||=+|++++.+
T Consensus 70 I~~~~TP~~L~meD~DiID~~~~~~ 94 (95)
T 2l76_A 70 LSPTATPRTLKLGVADIIDCVVLTS 94 (95)
T ss_dssp CCTTSCHHHHTCCSSCEEEEEECCC
T ss_pred CCCCCCHhHcCCCCCCEEEEEEecC
Confidence 44445666775 8999999999875
No 30
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=20.93 E-value=1.3e+02 Score=20.07 Aligned_cols=39 Identities=18% Similarity=0.255 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhcCC------------CceeEeccccCHHHHHHHHHHHH
Q 029542 141 RLAEIRRFFEDYKKNE------------NKKVDVEDFLPAEAAIEAIKYSM 179 (192)
Q Consensus 141 ~l~~i~~fF~~YK~le------------gK~v~~~~~~~~~~A~~vI~~~~ 179 (192)
.-++|+++|..|-... .|.+.+..|.+.+.|.+.|+..+
T Consensus 26 t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 76 (106)
T 2dgp_A 26 DEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALH 76 (106)
T ss_dssp CHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhc
Confidence 3457889999984321 23356677899999998877543
No 31
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.45 E-value=85 Score=20.89 Aligned_cols=36 Identities=14% Similarity=0.289 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhhcCC------------CceeEeccccCHHHHHHHHH
Q 029542 141 RLAEIRRFFEDYKKNE------------NKKVDVEDFLPAEAAIEAIK 176 (192)
Q Consensus 141 ~l~~i~~fF~~YK~le------------gK~v~~~~~~~~~~A~~vI~ 176 (192)
.-++|+++|..|-... .|.+.+..|.+.+.|.+.|+
T Consensus 23 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 70 (99)
T 2dgs_A 23 GETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 70 (99)
T ss_dssp CHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH
Confidence 3466889999883211 23356677899999988875
No 32
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=20.17 E-value=58 Score=23.37 Aligned_cols=21 Identities=14% Similarity=0.332 Sum_probs=18.3
Q ss_pred CCCCChhHHHHHHHHHHHhhc
Q 029542 134 IKELPPHRLAEIRRFFEDYKK 154 (192)
Q Consensus 134 i~Dl~~~~l~~i~~fF~~YK~ 154 (192)
..++++...+++++||...|.
T Consensus 67 w~~l~~~~K~~L~~~~~~lk~ 87 (93)
T 3mab_A 67 WHGLDEAKKIELKKFHQSLEG 87 (93)
T ss_dssp GGGSCHHHHHHHHHHHHHHCC
T ss_pred HHHCCHHHHHHHHHHHHHhhc
Confidence 457889999999999999885
No 33
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=20.10 E-value=78 Score=20.78 Aligned_cols=38 Identities=21% Similarity=0.104 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhhcC---------CC--ceeEeccccCHHHHHHHHHHH
Q 029542 141 RLAEIRRFFEDYKKN---------EN--KKVDVEDFLPAEAAIEAIKYS 178 (192)
Q Consensus 141 ~l~~i~~fF~~YK~l---------eg--K~v~~~~~~~~~~A~~vI~~~ 178 (192)
.-++|+++|..|-.. +| |.+.+..|.+.+.|.+.|+..
T Consensus 29 ~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 77 (95)
T 2ywk_A 29 REEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALL 77 (95)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHh
Confidence 356789999998321 12 234556788999998877643
No 34
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=20.02 E-value=63 Score=22.16 Aligned_cols=37 Identities=14% Similarity=0.233 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhhcCC----CceeEeccccCHHHHHHHHHH
Q 029542 141 RLAEIRRFFEDYKKNE----NKKVDVEDFLPAEAAIEAIKY 177 (192)
Q Consensus 141 ~l~~i~~fF~~YK~le----gK~v~~~~~~~~~~A~~vI~~ 177 (192)
.-++|+.+|..|-... .|.+.+..|.+.+.|.+.|++
T Consensus 41 t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~ 81 (110)
T 1wf1_A 41 KKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLG 81 (110)
T ss_dssp CHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHH
Confidence 5677999999986554 244556678888888887764
Done!