Query 029544
Match_columns 191
No_of_seqs 216 out of 2385
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 14:37:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029544.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029544hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.8 3.6E-19 7.8E-24 144.4 8.7 87 60-148 204-291 (348)
2 PF13639 zf-RING_2: Ring finge 99.5 5.2E-15 1.1E-19 86.4 1.7 43 88-131 2-44 (44)
3 PHA02929 N1R/p28-like protein; 99.4 4E-13 8.8E-18 104.8 4.6 77 60-136 147-228 (238)
4 PF12678 zf-rbx1: RING-H2 zinc 99.3 2.5E-12 5.3E-17 83.1 3.8 45 86-131 19-73 (73)
5 KOG0317 Predicted E3 ubiquitin 99.3 5.2E-12 1.1E-16 99.3 4.9 53 82-138 235-287 (293)
6 PLN03208 E3 ubiquitin-protein 99.2 8.9E-12 1.9E-16 93.7 5.1 54 82-139 14-83 (193)
7 COG5243 HRD1 HRD ubiquitin lig 99.2 4.9E-11 1.1E-15 96.7 7.1 52 83-135 284-345 (491)
8 COG5540 RING-finger-containing 99.2 1.7E-11 3.6E-16 96.9 3.1 50 86-136 323-373 (374)
9 KOG0823 Predicted E3 ubiquitin 99.1 1E-10 2.2E-15 89.5 5.9 54 83-140 44-100 (230)
10 KOG0320 Predicted E3 ubiquitin 99.1 3.8E-11 8.2E-16 88.2 2.7 55 81-137 126-180 (187)
11 PF13920 zf-C3HC4_3: Zinc fing 99.1 5E-11 1.1E-15 71.3 2.2 46 86-135 2-48 (50)
12 PF13923 zf-C3HC4_2: Zinc fing 99.0 8E-11 1.7E-15 66.7 1.6 39 89-130 1-39 (39)
13 PF15227 zf-C3HC4_4: zinc fing 99.0 1.4E-10 3E-15 66.7 2.1 38 89-130 1-42 (42)
14 PHA02926 zinc finger-like prot 99.0 2.1E-10 4.5E-15 87.4 2.9 56 82-137 166-232 (242)
15 PF12861 zf-Apc11: Anaphase-pr 98.9 6.2E-10 1.4E-14 72.8 2.6 50 85-135 20-82 (85)
16 cd00162 RING RING-finger (Real 98.9 7.6E-10 1.6E-14 64.0 2.7 44 88-134 1-45 (45)
17 PF14634 zf-RING_5: zinc-RING 98.9 2.4E-09 5.2E-14 62.2 3.2 44 88-132 1-44 (44)
18 smart00504 Ubox Modified RING 98.8 2.5E-09 5.4E-14 66.9 2.9 46 87-136 2-47 (63)
19 PF00097 zf-C3HC4: Zinc finger 98.8 1.6E-09 3.4E-14 62.0 1.5 39 89-130 1-41 (41)
20 KOG0802 E3 ubiquitin ligase [P 98.8 4.1E-09 8.8E-14 92.4 4.0 53 84-137 289-343 (543)
21 TIGR00599 rad18 DNA repair pro 98.8 4.5E-09 9.8E-14 87.8 3.4 51 83-137 23-73 (397)
22 smart00184 RING Ring finger. E 98.7 1.3E-08 2.9E-13 56.7 2.5 38 89-130 1-39 (39)
23 KOG0287 Postreplication repair 98.6 1.2E-08 2.5E-13 82.2 0.8 51 85-139 22-72 (442)
24 COG5574 PEX10 RING-finger-cont 98.6 2E-08 4.4E-13 78.3 2.1 50 84-137 213-264 (271)
25 KOG2164 Predicted E3 ubiquitin 98.5 3.7E-08 8.1E-13 83.3 2.7 47 86-136 186-237 (513)
26 COG5194 APC11 Component of SCF 98.5 7.3E-08 1.6E-12 61.5 2.5 30 107-136 53-82 (88)
27 COG5432 RAD18 RING-finger-cont 98.5 3.2E-08 6.8E-13 78.2 0.7 52 84-139 23-74 (391)
28 KOG1493 Anaphase-promoting com 98.5 3E-08 6.5E-13 62.8 0.3 50 85-135 19-81 (84)
29 PF04564 U-box: U-box domain; 98.3 2.9E-07 6.3E-12 59.4 2.4 49 85-137 3-52 (73)
30 PF13445 zf-RING_UBOX: RING-ty 98.3 3.5E-07 7.7E-12 52.6 2.4 33 89-123 1-34 (43)
31 KOG1734 Predicted RING-contain 98.3 1.4E-07 3E-12 73.9 0.8 51 85-136 223-282 (328)
32 TIGR00570 cdk7 CDK-activating 98.3 5.2E-07 1.1E-11 72.9 3.6 52 86-138 3-57 (309)
33 KOG0828 Predicted E3 ubiquitin 98.2 3.4E-07 7.5E-12 77.1 1.3 51 86-136 571-635 (636)
34 PF14835 zf-RING_6: zf-RING of 98.2 3.3E-07 7.1E-12 56.5 0.8 47 86-137 7-53 (65)
35 KOG0804 Cytoplasmic Zn-finger 98.2 6.2E-07 1.3E-11 74.8 2.2 51 82-135 171-222 (493)
36 smart00744 RINGv The RING-vari 98.2 1.2E-06 2.7E-11 51.9 2.5 42 88-131 1-49 (49)
37 KOG4265 Predicted E3 ubiquitin 98.1 1.3E-06 2.9E-11 71.1 2.2 53 84-140 288-341 (349)
38 KOG0978 E3 ubiquitin ligase in 98.1 7.6E-07 1.6E-11 78.7 0.7 49 85-137 642-691 (698)
39 KOG4172 Predicted E3 ubiquitin 98.1 6.4E-07 1.4E-11 53.1 0.2 47 86-136 7-55 (62)
40 KOG2930 SCF ubiquitin ligase, 98.1 1.3E-06 2.8E-11 58.7 1.3 29 107-135 80-108 (114)
41 KOG2177 Predicted E3 ubiquitin 98.1 1.6E-06 3.4E-11 69.9 1.8 46 83-132 10-55 (386)
42 COG5219 Uncharacterized conser 98.0 1.4E-06 3E-11 78.5 1.2 53 83-135 1466-1523(1525)
43 PF11793 FANCL_C: FANCL C-term 98.0 1.3E-06 2.7E-11 55.9 0.6 50 86-135 2-66 (70)
44 KOG0311 Predicted E3 ubiquitin 98.0 6.4E-07 1.4E-11 72.7 -1.8 51 84-137 41-92 (381)
45 KOG0827 Predicted E3 ubiquitin 98.0 2.9E-06 6.2E-11 69.7 1.6 49 87-135 5-56 (465)
46 KOG1039 Predicted E3 ubiquitin 97.9 5E-06 1.1E-10 68.5 2.3 52 84-135 159-221 (344)
47 KOG0824 Predicted E3 ubiquitin 97.9 6.2E-06 1.4E-10 65.7 2.0 50 86-139 7-57 (324)
48 KOG0825 PHD Zn-finger protein 97.7 8.1E-06 1.7E-10 72.4 -0.3 52 86-138 123-174 (1134)
49 KOG4159 Predicted E3 ubiquitin 97.6 3.9E-05 8.4E-10 64.5 2.8 50 84-137 82-131 (398)
50 PF11789 zf-Nse: Zinc-finger o 97.6 3.9E-05 8.4E-10 46.9 1.7 42 85-129 10-53 (57)
51 KOG4445 Uncharacterized conser 97.5 3E-05 6.5E-10 61.9 0.8 54 85-139 114-190 (368)
52 KOG1645 RING-finger-containing 97.5 6.7E-05 1.5E-09 62.2 2.3 49 86-134 4-55 (463)
53 KOG2660 Locus-specific chromos 97.4 2.4E-05 5.1E-10 63.3 -0.7 51 84-137 13-63 (331)
54 KOG0297 TNF receptor-associate 97.3 0.00013 2.8E-09 61.7 2.7 54 83-139 18-71 (391)
55 KOG0826 Predicted E3 ubiquitin 97.3 0.00055 1.2E-08 55.4 6.0 48 84-134 298-345 (357)
56 COG5152 Uncharacterized conser 97.3 9.2E-05 2E-09 55.8 1.1 46 87-136 197-242 (259)
57 KOG2879 Predicted E3 ubiquitin 97.3 0.00018 4E-09 56.8 2.7 49 84-135 237-287 (298)
58 KOG1785 Tyrosine kinase negati 97.3 0.00012 2.5E-09 60.8 1.5 46 88-137 371-418 (563)
59 KOG4692 Predicted E3 ubiquitin 97.1 0.00045 9.8E-09 56.5 3.1 50 83-136 419-468 (489)
60 KOG1002 Nucleotide excision re 97.1 0.00023 5.1E-09 61.0 1.5 50 84-137 534-588 (791)
61 KOG1428 Inhibitor of type V ad 97.0 0.00049 1.1E-08 65.2 3.0 66 70-136 3470-3545(3738)
62 KOG1813 Predicted E3 ubiquitin 97.0 0.00029 6.4E-09 56.2 1.1 48 87-138 242-289 (313)
63 KOG1571 Predicted E3 ubiquitin 96.9 0.00015 3.3E-09 59.4 -1.3 46 84-136 303-348 (355)
64 KOG3970 Predicted E3 ubiquitin 96.8 0.0012 2.5E-08 50.9 3.1 51 85-137 49-107 (299)
65 KOG3039 Uncharacterized conser 96.8 0.0014 3E-08 51.2 3.4 53 86-138 221-273 (303)
66 KOG1941 Acetylcholine receptor 96.7 0.00064 1.4E-08 56.3 1.1 49 85-134 364-415 (518)
67 KOG1814 Predicted E3 ubiquitin 96.5 0.0018 3.8E-08 54.1 2.2 48 85-133 183-238 (445)
68 PF04641 Rtf2: Rtf2 RING-finge 96.4 0.0039 8.5E-08 49.9 4.1 54 83-137 110-163 (260)
69 PHA02862 5L protein; Provision 96.4 0.0026 5.6E-08 45.7 2.4 46 87-137 3-55 (156)
70 PF14570 zf-RING_4: RING/Ubox 96.3 0.0036 7.9E-08 36.6 2.5 45 89-134 1-47 (48)
71 PHA02825 LAP/PHD finger-like p 96.3 0.004 8.6E-08 45.6 3.0 49 84-137 6-61 (162)
72 PF05883 Baculo_RING: Baculovi 96.3 0.0016 3.6E-08 46.3 1.0 35 86-121 26-66 (134)
73 COG5236 Uncharacterized conser 96.3 0.0029 6.4E-08 51.8 2.4 66 66-135 41-108 (493)
74 KOG0801 Predicted E3 ubiquitin 96.2 0.0016 3.5E-08 47.6 0.8 41 72-114 164-204 (205)
75 KOG4275 Predicted E3 ubiquitin 96.0 0.0011 2.3E-08 53.0 -1.2 43 86-136 300-343 (350)
76 KOG1952 Transcription factor N 95.9 0.0051 1.1E-07 55.7 2.4 52 84-135 189-247 (950)
77 KOG4739 Uncharacterized protei 95.9 0.0029 6.4E-08 49.3 0.8 46 88-137 5-50 (233)
78 PHA03096 p28-like protein; Pro 95.9 0.0039 8.5E-08 50.4 1.4 36 87-122 179-218 (284)
79 KOG4185 Predicted E3 ubiquitin 95.7 0.0074 1.6E-07 49.1 2.3 48 87-134 4-54 (296)
80 COG5222 Uncharacterized conser 95.6 0.0063 1.4E-07 48.9 1.6 43 87-132 275-318 (427)
81 PF10367 Vps39_2: Vacuolar sor 95.6 0.0058 1.3E-07 41.8 1.2 33 84-118 76-108 (109)
82 PF08746 zf-RING-like: RING-li 95.4 0.015 3.2E-07 33.3 2.3 41 89-130 1-43 (43)
83 PF12906 RINGv: RING-variant d 95.4 0.014 3.1E-07 34.0 2.3 40 89-130 1-47 (47)
84 PF14447 Prok-RING_4: Prokaryo 95.0 0.014 3E-07 35.0 1.4 43 88-136 9-51 (55)
85 KOG2114 Vacuolar assembly/sort 95.0 0.011 2.4E-07 53.6 1.5 42 87-134 841-882 (933)
86 PF10272 Tmpp129: Putative tra 94.9 0.023 5E-07 47.4 3.0 28 108-135 311-351 (358)
87 PF07800 DUF1644: Protein of u 94.4 0.032 7E-07 40.8 2.4 59 86-144 2-100 (162)
88 KOG1001 Helicase-like transcri 94.3 0.019 4.1E-07 51.9 1.1 46 87-137 455-502 (674)
89 COG5220 TFB3 Cdk activating ki 94.3 0.011 2.3E-07 46.2 -0.4 54 84-137 8-66 (314)
90 PF03854 zf-P11: P-11 zinc fin 94.2 0.032 7E-07 32.3 1.6 44 88-137 4-48 (50)
91 PF05290 Baculo_IE-1: Baculovi 94.1 0.039 8.5E-07 39.2 2.2 54 85-138 79-135 (140)
92 KOG1940 Zn-finger protein [Gen 93.8 0.034 7.4E-07 44.6 1.7 46 87-132 159-204 (276)
93 KOG3268 Predicted E3 ubiquitin 93.8 0.034 7.4E-07 41.5 1.6 30 107-136 189-229 (234)
94 PF02439 Adeno_E3_CR2: Adenovi 93.4 0.26 5.6E-06 27.2 4.2 30 8-37 5-34 (38)
95 PF05393 Hum_adeno_E3A: Human 93.2 0.3 6.5E-06 32.1 4.9 24 21-44 44-67 (94)
96 KOG3002 Zn finger protein [Gen 93.1 0.06 1.3E-06 44.0 2.0 47 84-136 46-92 (299)
97 COG5175 MOT2 Transcriptional r 92.8 0.078 1.7E-06 43.5 2.2 52 86-137 14-66 (480)
98 KOG0827 Predicted E3 ubiquitin 92.7 0.007 1.5E-07 50.3 -3.8 51 86-137 196-247 (465)
99 PF14446 Prok-RING_1: Prokaryo 92.5 0.19 4.2E-06 30.1 3.1 34 86-119 5-38 (54)
100 KOG2932 E3 ubiquitin ligase in 92.3 0.057 1.2E-06 43.8 1.0 29 103-134 105-133 (389)
101 KOG0298 DEAD box-containing he 92.3 0.037 8.1E-07 52.5 -0.1 47 85-134 1152-1198(1394)
102 KOG3800 Predicted E3 ubiquitin 92.1 0.13 2.8E-06 41.4 2.6 50 88-137 2-53 (300)
103 KOG3161 Predicted E3 ubiquitin 92.0 0.046 9.9E-07 48.4 0.1 44 87-133 12-55 (861)
104 KOG4362 Transcriptional regula 91.5 0.055 1.2E-06 48.5 0.0 51 85-139 20-73 (684)
105 KOG2034 Vacuolar sorting prote 90.2 0.15 3.3E-06 46.8 1.6 36 84-121 815-850 (911)
106 COG5183 SSM4 Protein involved 90.2 0.27 5.8E-06 44.9 3.0 53 84-138 10-69 (1175)
107 PF07975 C1_4: TFIIH C1-like d 89.9 0.31 6.7E-06 28.9 2.2 43 89-131 2-50 (51)
108 PF02891 zf-MIZ: MIZ/SP-RING z 89.4 0.22 4.8E-06 29.4 1.3 43 87-133 3-50 (50)
109 KOG4367 Predicted Zn-finger pr 89.3 0.21 4.6E-06 42.4 1.6 35 84-122 2-36 (699)
110 KOG1812 Predicted E3 ubiquitin 89.0 0.17 3.7E-06 42.9 0.9 37 85-122 145-182 (384)
111 KOG3113 Uncharacterized conser 88.7 0.43 9.3E-06 37.7 2.8 52 85-138 110-161 (293)
112 KOG3053 Uncharacterized conser 88.6 0.21 4.5E-06 39.5 1.1 52 84-136 18-83 (293)
113 KOG0309 Conserved WD40 repeat- 88.6 0.29 6.2E-06 44.4 2.0 42 86-129 1028-1069(1081)
114 KOG2817 Predicted E3 ubiquitin 88.5 0.36 7.8E-06 40.5 2.4 49 85-134 333-384 (394)
115 PF01102 Glycophorin_A: Glycop 88.1 1 2.2E-05 31.8 4.2 29 8-37 66-94 (122)
116 KOG3899 Uncharacterized conser 87.9 0.27 5.8E-06 39.7 1.3 29 108-136 325-366 (381)
117 PF06024 DUF912: Nucleopolyhed 84.7 0.4 8.7E-06 32.7 0.7 14 5-18 61-74 (101)
118 PF02439 Adeno_E3_CR2: Adenovi 83.5 4.6 9.9E-05 22.3 4.4 32 5-36 5-36 (38)
119 PF00558 Vpu: Vpu protein; In 83.2 1.3 2.8E-05 28.9 2.6 10 57-66 54-63 (81)
120 KOG1815 Predicted E3 ubiquitin 82.3 0.79 1.7E-05 39.6 1.7 36 84-122 68-103 (444)
121 KOG0825 PHD Zn-finger protein 81.2 0.94 2E-05 41.5 1.8 55 85-139 95-158 (1134)
122 KOG1100 Predicted E3 ubiquitin 81.0 0.63 1.4E-05 36.0 0.6 40 89-136 161-201 (207)
123 PF08114 PMP1_2: ATPase proteo 79.8 3.9 8.5E-05 22.9 3.3 22 4-25 8-29 (43)
124 KOG1609 Protein involved in mR 79.3 1.4 3E-05 35.9 2.1 51 86-137 78-136 (323)
125 KOG4718 Non-SMC (structural ma 78.7 0.95 2.1E-05 34.9 0.9 46 86-134 181-226 (235)
126 KOG0269 WD40 repeat-containing 78.6 1.9 4.1E-05 39.3 2.9 40 88-129 781-820 (839)
127 TIGR00622 ssl1 transcription f 78.3 2.4 5.2E-05 29.4 2.7 45 87-131 56-110 (112)
128 KOG3579 Predicted E3 ubiquitin 77.6 0.99 2.1E-05 36.4 0.7 35 85-123 267-305 (352)
129 KOG1829 Uncharacterized conser 77.2 0.82 1.8E-05 40.6 0.2 43 86-132 511-558 (580)
130 PF01102 Glycophorin_A: Glycop 77.1 4.5 9.8E-05 28.6 3.9 31 6-36 67-97 (122)
131 COG3462 Predicted membrane pro 76.6 7.1 0.00015 26.9 4.5 27 5-31 48-74 (117)
132 PRK14859 tatA twin arginine tr 75.3 3.7 8.1E-05 25.4 2.7 15 1-15 1-15 (63)
133 PF01363 FYVE: FYVE zinc finge 75.1 1.5 3.4E-05 27.2 1.0 37 85-121 8-44 (69)
134 PF13901 DUF4206: Domain of un 74.7 2.6 5.6E-05 32.5 2.3 41 86-132 152-197 (202)
135 PF06679 DUF1180: Protein of u 74.6 4.8 0.0001 29.9 3.6 23 13-35 100-122 (163)
136 PF00628 PHD: PHD-finger; Int 74.6 1.2 2.6E-05 25.9 0.4 42 89-131 2-49 (51)
137 KOG3039 Uncharacterized conser 74.5 2.8 6.1E-05 33.2 2.5 35 84-122 41-75 (303)
138 PF08374 Protocadherin: Protoc 74.2 1.3 2.8E-05 34.2 0.6 28 6-33 37-64 (221)
139 PRK04598 tatA twin arginine tr 73.4 4.4 9.5E-05 26.4 2.8 14 1-14 1-14 (81)
140 PRK01614 tatE twin arginine tr 72.9 4.5 9.8E-05 26.4 2.8 14 1-14 1-14 (85)
141 KOG0802 E3 ubiquitin ligase [P 72.9 2.2 4.7E-05 38.0 1.7 47 84-138 477-523 (543)
142 PRK01844 hypothetical protein; 72.3 8.5 0.00018 24.5 3.8 28 5-32 4-31 (72)
143 PRK03554 tatA twin arginine tr 72.0 4.9 0.00011 26.6 2.8 15 1-15 1-15 (89)
144 KOG2068 MOT2 transcription fac 71.9 6.1 0.00013 32.6 4.0 50 87-136 250-299 (327)
145 PRK14860 tatA twin arginine tr 71.6 4.3 9.4E-05 25.2 2.4 14 1-14 1-14 (64)
146 PF04277 OAD_gamma: Oxaloaceta 71.6 23 0.0005 22.5 6.3 25 7-31 6-30 (79)
147 PF15050 SCIMP: SCIMP protein 71.4 9.4 0.0002 26.8 4.2 23 2-24 4-26 (133)
148 KOG3842 Adaptor protein Pellin 71.2 5.6 0.00012 32.7 3.5 52 84-136 339-415 (429)
149 PRK00523 hypothetical protein; 70.7 10 0.00022 24.1 3.9 28 5-32 5-32 (72)
150 KOG2807 RNA polymerase II tran 70.3 3.7 8.1E-05 33.8 2.4 46 86-132 330-375 (378)
151 PHA02975 hypothetical protein; 69.8 10 0.00023 23.7 3.7 17 13-29 51-67 (69)
152 KOG0824 Predicted E3 ubiquitin 68.9 5.5 0.00012 32.5 3.0 51 84-137 103-153 (324)
153 PRK00720 tatA twin arginine tr 68.9 6.5 0.00014 25.5 2.8 14 1-14 1-14 (78)
154 PRK14858 tatA twin arginine tr 67.7 5.3 0.00012 27.6 2.4 14 1-14 1-14 (108)
155 PF10497 zf-4CXXC_R1: Zinc-fin 67.7 7.8 0.00017 26.6 3.3 51 85-135 6-72 (105)
156 PRK01833 tatA twin arginine tr 67.7 7.2 0.00016 25.0 2.8 15 1-15 1-15 (74)
157 PF15330 SIT: SHP2-interacting 66.2 8.7 0.00019 26.5 3.2 23 16-38 6-28 (107)
158 PRK03625 tatE twin arginine tr 65.5 7.5 0.00016 24.4 2.6 15 1-15 1-15 (67)
159 PF13719 zinc_ribbon_5: zinc-r 64.9 5.3 0.00011 21.8 1.6 12 88-99 4-15 (37)
160 PF04216 FdhE: Protein involve 64.8 1.1 2.4E-05 36.4 -1.6 50 84-133 170-220 (290)
161 PF07406 NICE-3: NICE-3 protei 64.5 6.3 0.00014 30.0 2.5 38 2-40 7-44 (186)
162 PRK14857 tatA twin arginine tr 64.4 7.2 0.00016 26.0 2.5 15 1-15 3-17 (90)
163 PF13908 Shisa: Wnt and FGF in 64.1 2.7 5.9E-05 31.5 0.5 25 8-32 80-104 (179)
164 PF04710 Pellino: Pellino; In 64.1 2.2 4.9E-05 36.0 0.0 51 85-136 327-402 (416)
165 PRK04098 sec-independent trans 63.4 6.5 0.00014 29.0 2.3 13 1-13 1-13 (158)
166 KOG1812 Predicted E3 ubiquitin 63.2 3.3 7.3E-05 35.1 0.9 44 86-130 306-351 (384)
167 PHA02849 putative transmembran 63.0 20 0.00044 23.1 4.2 16 2-17 12-27 (82)
168 cd00065 FYVE FYVE domain; Zinc 63.0 6.1 0.00013 23.3 1.8 35 87-121 3-37 (57)
169 PF05605 zf-Di19: Drought indu 62.8 3.4 7.4E-05 24.5 0.6 13 86-98 2-14 (54)
170 smart00132 LIM Zinc-binding do 62.5 7.1 0.00015 20.6 1.9 36 89-134 2-37 (39)
171 smart00064 FYVE Protein presen 62.0 7.5 0.00016 24.0 2.2 36 86-121 10-45 (68)
172 PRK02958 tatA twin arginine tr 61.8 11 0.00023 24.1 2.8 14 1-14 1-14 (73)
173 smart00249 PHD PHD zinc finger 61.4 7 0.00015 21.5 1.8 30 89-119 2-31 (47)
174 PF01034 Syndecan: Syndecan do 61.3 2.8 6E-05 26.0 0.1 8 31-38 33-40 (64)
175 PRK01770 sec-independent trans 61.2 7.5 0.00016 29.1 2.3 14 1-14 1-14 (171)
176 PF10577 UPF0560: Uncharacteri 61.1 14 0.00031 34.2 4.4 27 10-36 276-302 (807)
177 PF06844 DUF1244: Protein of u 60.8 4.6 0.0001 25.1 0.9 12 111-122 11-22 (68)
178 PRK11677 hypothetical protein; 60.7 12 0.00026 26.9 3.2 20 6-25 1-20 (134)
179 KOG2979 Protein involved in DN 60.4 5.6 0.00012 31.7 1.6 45 86-133 176-222 (262)
180 PRK00708 sec-independent trans 59.6 7.9 0.00017 30.0 2.3 14 1-14 1-14 (209)
181 PRK00404 tatB sec-independent 59.4 8.9 0.00019 27.8 2.4 11 1-11 1-11 (141)
182 PF10571 UPF0547: Uncharacteri 59.1 2.5 5.4E-05 21.3 -0.3 7 89-95 3-9 (26)
183 PF04423 Rad50_zn_hook: Rad50 59.0 4.2 9.2E-05 24.1 0.6 12 126-137 22-33 (54)
184 PF06906 DUF1272: Protein of u 58.5 25 0.00055 21.2 3.8 45 88-137 7-54 (57)
185 PRK04561 tatA twin arginine tr 57.9 14 0.0003 23.7 2.8 13 1-13 1-13 (75)
186 PF02060 ISK_Channel: Slow vol 57.4 18 0.0004 25.6 3.6 34 6-39 42-75 (129)
187 PRK04654 sec-independent trans 56.6 10 0.00022 29.3 2.4 12 1-12 1-12 (214)
188 COG3630 OadG Na+-transporting 55.0 15 0.00032 24.1 2.6 30 3-32 8-37 (84)
189 PF13240 zinc_ribbon_2: zinc-r 54.6 2.5 5.5E-05 20.5 -0.8 8 125-132 14-21 (23)
190 PF14569 zf-UDP: Zinc-binding 54.5 20 0.00043 23.2 3.1 55 85-139 8-66 (80)
191 PF05568 ASFV_J13L: African sw 54.2 18 0.00039 26.3 3.2 10 8-17 31-40 (189)
192 KOG2066 Vacuolar assembly/sort 53.9 4.5 9.7E-05 37.2 0.1 43 86-130 784-830 (846)
193 PF11014 DUF2852: Protein of u 53.8 35 0.00075 23.8 4.5 30 3-32 7-36 (115)
194 PF00737 PsbH: Photosystem II 53.2 33 0.00072 20.3 3.6 15 10-24 25-39 (52)
195 PF07204 Orthoreo_P10: Orthore 52.8 12 0.00026 25.0 2.0 20 18-37 50-69 (98)
196 PF11346 DUF3149: Protein of u 52.6 42 0.0009 19.0 4.5 11 25-35 28-38 (42)
197 KOG3054 Uncharacterized conser 52.4 37 0.0008 27.0 4.9 27 12-38 4-30 (299)
198 COG5109 Uncharacterized conser 52.3 11 0.00023 31.1 2.0 45 86-131 336-383 (396)
199 PF04710 Pellino: Pellino; In 51.6 4.9 0.00011 34.0 0.0 28 107-134 308-338 (416)
200 PF07191 zinc-ribbons_6: zinc- 51.4 2 4.4E-05 27.2 -1.7 42 87-137 2-43 (70)
201 KOG3799 Rab3 effector RIM1 and 51.4 4.1 8.9E-05 29.1 -0.4 52 82-134 61-117 (169)
202 PF11359 gpUL132: Glycoprotein 51.3 26 0.00057 27.1 3.8 25 8-32 54-78 (235)
203 PF00412 LIM: LIM domain; Int 51.2 15 0.00033 21.5 2.2 39 89-137 1-39 (58)
204 PRK00575 tatA twin arginine tr 50.5 17 0.00038 24.3 2.5 12 1-12 1-12 (92)
205 PF15176 LRR19-TM: Leucine-ric 50.1 43 0.00094 22.7 4.3 17 20-36 32-48 (102)
206 KOG0956 PHD finger protein AF1 50.1 5.6 0.00012 36.1 0.1 52 86-138 117-185 (900)
207 PF05454 DAG1: Dystroglycan (D 49.6 5.5 0.00012 32.5 0.0 24 10-33 148-171 (290)
208 PF12072 DUF3552: Domain of un 48.0 33 0.00071 26.3 4.1 26 6-31 1-26 (201)
209 PF02480 Herpes_gE: Alphaherpe 47.7 6.1 0.00013 34.2 0.0 16 10-25 356-371 (439)
210 smart00647 IBR In Between Ring 47.6 7.1 0.00015 23.4 0.3 19 102-120 40-58 (64)
211 PRK14473 F0F1 ATP synthase sub 47.5 36 0.00078 25.0 4.1 7 1-7 3-9 (164)
212 COG3763 Uncharacterized protei 47.4 51 0.0011 20.8 4.0 22 8-29 7-28 (71)
213 CHL00066 psbH photosystem II p 47.2 36 0.00079 21.6 3.4 17 9-25 39-55 (73)
214 PF14979 TMEM52: Transmembrane 47.1 56 0.0012 23.8 4.8 20 6-25 19-38 (154)
215 PLN00055 photosystem II reacti 47.1 36 0.00078 21.6 3.4 17 9-25 39-55 (73)
216 PF15179 Myc_target_1: Myc tar 47.0 49 0.0011 25.1 4.6 27 7-33 21-47 (197)
217 PF12877 DUF3827: Domain of un 46.7 13 0.00027 33.7 1.7 27 5-31 268-294 (684)
218 CHL00019 atpF ATP synthase CF0 46.6 29 0.00062 26.1 3.5 25 1-25 19-44 (184)
219 PF04478 Mid2: Mid2 like cell 46.4 3.7 8.1E-05 30.1 -1.3 17 11-27 54-70 (154)
220 COG1826 TatA Sec-independent p 45.9 23 0.00049 23.7 2.6 13 1-13 1-13 (94)
221 PRK02624 psbH photosystem II r 45.5 44 0.00094 20.6 3.4 17 9-25 27-43 (64)
222 COG3105 Uncharacterized protei 45.1 37 0.00079 24.2 3.5 27 5-32 5-31 (138)
223 KOG3005 GIY-YIG type nuclease 44.9 13 0.00027 29.9 1.3 48 87-134 183-242 (276)
224 PF07213 DAP10: DAP10 membrane 44.6 74 0.0016 20.6 4.6 35 5-40 32-66 (79)
225 PF11023 DUF2614: Protein of u 44.5 1.1E+02 0.0023 21.4 5.9 26 107-138 74-99 (114)
226 PF03672 UPF0154: Uncharacteri 43.8 37 0.00079 21.1 3.0 21 11-31 3-23 (64)
227 PLN02189 cellulose synthase 43.7 33 0.00071 33.0 4.0 52 86-137 34-89 (1040)
228 TIGR01562 FdhE formate dehydro 43.4 7.3 0.00016 32.0 -0.2 48 85-132 183-232 (305)
229 PF10146 zf-C4H2: Zinc finger- 43.2 15 0.00033 28.9 1.6 25 111-135 195-219 (230)
230 TIGR01195 oadG_fam sodium pump 42.9 60 0.0013 21.1 4.1 28 8-35 10-37 (82)
231 PF14311 DUF4379: Domain of un 42.8 20 0.00043 21.2 1.8 23 107-130 33-55 (55)
232 PRK00442 tatA twin arginine tr 42.6 31 0.00067 23.1 2.7 13 1-13 1-13 (92)
233 PRK01371 sec-independent trans 42.4 18 0.00039 26.1 1.7 14 1-14 1-14 (137)
234 PF11044 TMEMspv1-c74-12: Plec 42.0 67 0.0015 18.3 4.1 23 8-30 4-26 (49)
235 PF01788 PsbJ: PsbJ; InterPro 41.6 64 0.0014 18.0 3.5 21 6-26 10-30 (40)
236 PRK03564 formate dehydrogenase 41.1 11 0.00024 31.0 0.5 48 85-132 186-234 (309)
237 PF13717 zinc_ribbon_4: zinc-r 40.9 29 0.00063 18.7 2.0 12 88-99 4-15 (36)
238 COG1622 CyoA Heme/copper-type 40.7 64 0.0014 25.7 4.8 21 19-39 44-64 (247)
239 KOG2231 Predicted E3 ubiquitin 40.0 19 0.00042 32.8 1.9 46 88-137 2-54 (669)
240 cd00350 rubredoxin_like Rubred 39.9 17 0.00036 19.1 1.0 9 124-132 17-25 (33)
241 PRK07353 F0F1 ATP synthase sub 39.8 52 0.0011 23.3 3.9 18 1-18 1-18 (140)
242 PLN02436 cellulose synthase A 39.0 43 0.00093 32.4 4.0 51 86-136 36-90 (1094)
243 PF03229 Alpha_GJ: Alphavirus 38.7 65 0.0014 22.5 3.9 24 10-33 87-113 (126)
244 PRK13454 F0F1 ATP synthase sub 38.5 59 0.0013 24.4 4.1 21 12-32 34-54 (181)
245 KOG4451 Uncharacterized conser 38.2 28 0.00061 27.3 2.3 27 110-136 249-275 (286)
246 PRK01919 tatB sec-independent 37.7 25 0.00053 26.3 1.8 12 1-12 1-12 (169)
247 PF07423 DUF1510: Protein of u 37.7 35 0.00077 26.6 2.8 13 19-31 24-36 (217)
248 PRK14475 F0F1 ATP synthase sub 37.3 63 0.0014 23.8 4.1 22 1-22 4-25 (167)
249 KOG2041 WD40 repeat protein [G 37.3 22 0.00048 32.8 1.8 48 84-135 1129-1185(1189)
250 KOG1094 Discoidin domain recep 37.0 26 0.00057 31.8 2.2 8 33-40 417-424 (807)
251 PHA02650 hypothetical protein; 36.9 1.1E+02 0.0023 19.9 4.4 20 16-35 56-75 (81)
252 PHA03048 IMV membrane protein; 36.4 93 0.002 20.7 4.2 30 7-36 43-72 (93)
253 PF06024 DUF912: Nucleopolyhed 36.0 25 0.00055 23.8 1.6 18 10-27 63-80 (101)
254 PF14584 DUF4446: Protein of u 35.8 42 0.00091 24.6 2.8 14 84-97 95-108 (151)
255 PLN02400 cellulose synthase 35.6 87 0.0019 30.4 5.4 53 86-138 36-92 (1085)
256 PF07649 C1_3: C1-like domain; 35.6 37 0.00079 17.2 1.9 29 88-117 2-30 (30)
257 PF02723 NS3_envE: Non-structu 35.4 1.1E+02 0.0024 20.0 4.4 28 8-35 20-47 (82)
258 PF14169 YdjO: Cold-inducible 35.2 20 0.00044 21.9 0.9 15 123-137 38-52 (59)
259 PRK13415 flagella biosynthesis 35.2 1.3E+02 0.0027 23.6 5.4 18 19-36 78-95 (219)
260 PF15050 SCIMP: SCIMP protein 34.9 72 0.0016 22.5 3.7 32 9-40 8-39 (133)
261 PHA02898 virion envelope prote 34.7 1.2E+02 0.0026 20.1 4.5 30 7-36 44-73 (92)
262 COG5627 MMS21 DNA repair prote 34.7 19 0.00042 28.4 0.9 41 86-129 189-231 (275)
263 KOG4185 Predicted E3 ubiquitin 34.2 5.8 0.00013 32.1 -2.1 49 86-134 207-266 (296)
264 PF05715 zf-piccolo: Piccolo Z 34.2 28 0.00061 21.2 1.4 13 124-136 2-14 (61)
265 PF10764 Gin: Inhibitor of sig 33.9 30 0.00064 19.9 1.4 29 89-122 2-30 (46)
266 PLN02638 cellulose synthase A 33.9 56 0.0012 31.6 3.9 51 86-136 17-71 (1079)
267 PRK09702 PTS system arbutin-sp 33.8 67 0.0015 23.8 3.7 25 10-34 10-34 (161)
268 PF06196 DUF997: Protein of un 33.6 1.3E+02 0.0028 19.5 4.5 31 2-32 40-70 (80)
269 PF05399 EVI2A: Ectropic viral 33.5 77 0.0017 24.7 3.9 17 8-24 130-146 (227)
270 PF09723 Zn-ribbon_8: Zinc rib 33.3 10 0.00023 21.2 -0.6 25 107-132 10-34 (42)
271 PRK07352 F0F1 ATP synthase sub 33.1 69 0.0015 23.7 3.7 30 1-30 14-44 (174)
272 COG2738 Predicted Zn-dependent 33.0 68 0.0015 24.8 3.6 29 1-29 124-152 (226)
273 PF02318 FYVE_2: FYVE-type zin 32.8 30 0.00065 24.0 1.6 46 85-132 53-102 (118)
274 PRK10525 cytochrome o ubiquino 32.7 48 0.001 27.4 3.0 31 8-38 43-73 (315)
275 PF15145 DUF4577: Domain of un 32.6 61 0.0013 22.5 3.0 25 6-30 62-86 (128)
276 PRK03814 oxaloacetate decarbox 32.4 1.3E+02 0.0027 19.8 4.4 27 8-34 14-40 (85)
277 PRK11088 rrmA 23S rRNA methylt 32.3 33 0.00071 27.4 2.0 25 87-112 3-27 (272)
278 PF13832 zf-HC5HC2H_2: PHD-zin 32.1 46 0.00099 22.5 2.4 34 85-120 54-88 (110)
279 COG3492 Uncharacterized protei 31.9 21 0.00044 23.8 0.6 12 111-122 42-53 (104)
280 PLN02915 cellulose synthase A 31.9 1E+02 0.0022 29.9 5.2 54 85-138 14-71 (1044)
281 PF13150 DUF3989: Protein of u 31.8 1.5E+02 0.0033 19.4 5.6 28 6-33 26-53 (85)
282 PF13260 DUF4051: Protein of u 31.6 1.1E+02 0.0024 17.8 3.8 15 21-35 16-30 (54)
283 KOG2113 Predicted RNA binding 31.5 40 0.00087 27.9 2.3 43 86-134 343-386 (394)
284 PF14851 FAM176: FAM176 family 31.5 73 0.0016 23.4 3.5 23 9-31 24-47 (153)
285 PHA03164 hypothetical protein; 31.4 73 0.0016 20.5 3.0 8 9-16 62-69 (88)
286 PF12877 DUF3827: Domain of un 31.3 47 0.001 30.2 2.8 28 9-37 269-296 (684)
287 KOG4323 Polycomb-like PHD Zn-f 30.4 18 0.00039 31.5 0.2 48 86-133 168-224 (464)
288 PF05767 Pox_A14: Poxvirus vir 30.3 1.4E+02 0.0031 19.9 4.3 30 7-36 44-73 (92)
289 PRK02919 oxaloacetate decarbox 30.2 67 0.0014 21.0 2.8 28 6-33 11-38 (82)
290 PF10083 DUF2321: Uncharacteri 30.2 20 0.00044 26.3 0.4 27 108-137 26-52 (158)
291 TIGR01433 CyoA cytochrome o ub 30.2 61 0.0013 25.4 3.1 18 20-37 43-60 (226)
292 PF06937 EURL: EURL protein; 30.2 37 0.00081 27.3 1.9 45 85-129 29-75 (285)
293 PF07010 Endomucin: Endomucin; 29.8 91 0.002 24.6 3.8 14 9-22 191-204 (259)
294 PF10746 Phage_holin_6: Phage 29.5 1.5E+02 0.0032 18.5 4.6 29 1-29 28-56 (66)
295 PF01998 DUF131: Protein of un 29.4 1.2E+02 0.0025 18.8 3.6 9 2-10 38-46 (64)
296 PRK13455 F0F1 ATP synthase sub 29.2 74 0.0016 23.8 3.3 22 1-22 22-43 (184)
297 PF06103 DUF948: Bacterial pro 29.0 1.1E+02 0.0024 19.9 3.8 22 8-29 3-24 (90)
298 PF14205 Cys_rich_KTR: Cystein 28.7 38 0.00083 20.3 1.3 10 126-135 30-39 (55)
299 COG4357 Zinc finger domain con 28.6 48 0.001 22.3 1.9 29 108-137 65-93 (105)
300 PRK00182 tatB sec-independent 28.6 55 0.0012 24.3 2.4 9 1-9 1-10 (160)
301 COG3190 FliO Flagellar biogene 28.5 1.4E+02 0.0031 21.5 4.5 33 3-35 17-49 (137)
302 PRK04989 psbM photosystem II r 28.4 92 0.002 16.8 2.6 16 9-24 9-24 (35)
303 KOG1094 Discoidin domain recep 28.0 90 0.002 28.5 4.0 29 12-40 393-421 (807)
304 PRK03100 sec-independent trans 27.9 56 0.0012 23.6 2.3 12 1-12 1-13 (136)
305 PRK05978 hypothetical protein; 27.5 52 0.0011 24.1 2.1 25 109-138 42-66 (148)
306 COG0711 AtpF F0F1-type ATP syn 27.3 96 0.0021 22.8 3.6 21 8-28 9-29 (161)
307 KOG2071 mRNA cleavage and poly 27.0 35 0.00075 30.6 1.3 33 84-120 511-556 (579)
308 PRK02565 photosystem II reacti 26.7 8.3 0.00018 21.2 -1.6 20 6-25 9-28 (39)
309 PF06809 NPDC1: Neural prolife 26.4 33 0.00072 28.3 1.0 12 23-34 213-224 (341)
310 COG1545 Predicted nucleic-acid 26.4 41 0.00089 24.2 1.4 20 107-134 34-53 (140)
311 PF01708 Gemini_mov: Geminivir 26.4 1.5E+02 0.0032 19.8 3.8 12 33-44 65-76 (91)
312 TIGR02661 MauD methylamine deh 26.3 92 0.002 23.3 3.4 8 88-95 85-92 (189)
313 PLN02248 cellulose synthase-li 26.0 89 0.0019 30.5 3.8 31 107-137 149-179 (1135)
314 PF15176 LRR19-TM: Leucine-ric 25.8 1.1E+02 0.0023 20.9 3.2 21 19-39 28-48 (102)
315 PTZ00303 phosphatidylinositol 25.7 44 0.00094 31.3 1.7 34 87-120 461-499 (1374)
316 COG3813 Uncharacterized protei 25.6 41 0.00088 21.4 1.1 28 109-138 28-55 (84)
317 PF05502 Dynactin_p62: Dynacti 25.3 34 0.00075 30.0 1.0 15 86-100 26-40 (483)
318 PF01485 IBR: IBR domain; Int 25.3 10 0.00022 22.7 -1.7 14 107-120 45-58 (64)
319 PRK14861 tatA twin arginine tr 25.1 88 0.0019 19.2 2.5 6 3-8 4-9 (61)
320 PF14991 MLANA: Protein melan- 24.7 15 0.00032 25.5 -1.1 8 27-34 43-50 (118)
321 PF13771 zf-HC5HC2H: PHD-like 24.5 55 0.0012 21.1 1.7 34 85-119 35-68 (90)
322 PF15330 SIT: SHP2-interacting 24.4 1.9E+02 0.0041 19.8 4.4 17 9-25 3-19 (107)
323 PRK14756 hypothetical protein; 24.4 1.1E+02 0.0025 15.5 3.2 17 6-22 7-23 (29)
324 PF15048 OSTbeta: Organic solu 23.9 1.8E+02 0.004 20.6 4.2 11 8-18 37-47 (125)
325 PF05510 Sarcoglycan_2: Sarcog 23.8 92 0.002 26.6 3.2 30 11-40 288-317 (386)
326 PF04689 S1FA: DNA binding pro 23.7 61 0.0013 20.1 1.6 11 21-31 27-37 (69)
327 TIGR03038 PS_II_psbM photosyst 23.7 1.3E+02 0.0028 16.0 2.7 16 9-24 9-24 (33)
328 smart00734 ZnF_Rad18 Rad18-lik 23.7 34 0.00073 17.0 0.4 9 126-134 3-11 (26)
329 PF13248 zf-ribbon_3: zinc-rib 23.5 18 0.00039 17.9 -0.6 6 127-132 19-24 (26)
330 PF10235 Cript: Microtubule-as 23.2 69 0.0015 21.3 1.9 40 86-138 44-83 (90)
331 COG5416 Uncharacterized integr 23.2 1E+02 0.0022 20.8 2.7 20 6-25 59-78 (98)
332 PF05151 PsbM: Photosystem II 22.9 1.3E+02 0.0029 15.8 3.8 20 8-27 8-27 (31)
333 PRK11827 hypothetical protein; 22.6 25 0.00054 21.5 -0.3 19 119-137 3-21 (60)
334 COG1766 fliF Flagellar basal b 22.5 1.5E+02 0.0033 26.6 4.4 31 9-39 444-474 (545)
335 PF05191 ADK_lid: Adenylate ki 22.4 43 0.00093 18.1 0.7 28 106-135 5-32 (36)
336 KOG1245 Chromatin remodeling c 22.3 31 0.00067 34.5 0.1 50 84-134 1106-1159(1404)
337 PF12955 DUF3844: Domain of un 22.2 1.6E+02 0.0036 20.1 3.6 21 11-31 70-90 (103)
338 KOG1538 Uncharacterized conser 22.1 35 0.00075 31.4 0.4 31 105-135 1047-1077(1081)
339 PRK04778 septation ring format 22.0 78 0.0017 28.4 2.6 9 9-17 3-11 (569)
340 TIGR02115 potass_kdpF K+-trans 21.9 1.3E+02 0.0027 15.1 2.4 10 16-25 5-14 (26)
341 TIGR03715 KxYKxGKxW KxYKxGKxW 21.8 1E+02 0.0023 15.5 2.1 17 1-17 6-22 (29)
342 KOG4021 Mitochondrial ribosoma 21.8 47 0.001 25.5 1.0 22 114-135 97-119 (239)
343 KOG1818 Membrane trafficking a 21.7 41 0.00088 30.5 0.8 45 87-131 166-218 (634)
344 PF03119 DNA_ligase_ZBD: NAD-d 21.6 39 0.00085 17.1 0.4 12 126-137 1-12 (28)
345 PRK01343 zinc-binding protein; 21.4 50 0.0011 20.0 0.9 12 124-135 9-20 (57)
346 PF02158 Neuregulin: Neureguli 21.3 31 0.00068 29.2 0.0 24 9-32 9-33 (404)
347 CHL00118 atpG ATP synthase CF0 21.0 1.5E+02 0.0032 21.5 3.5 25 7-31 24-48 (156)
348 PF11446 DUF2897: Protein of u 20.9 1.7E+02 0.0037 17.5 3.1 20 10-29 6-25 (55)
349 PF10577 UPF0560: Uncharacteri 20.8 1.9E+02 0.0042 27.2 4.8 34 8-41 271-304 (807)
350 PF05776 Papilloma_E5A: Papill 20.7 2.5E+02 0.0054 18.2 4.2 19 7-25 19-37 (91)
351 PF14353 CpXC: CpXC protein 20.7 94 0.002 21.6 2.4 12 125-136 39-50 (128)
352 PF15234 LAT: Linker for activ 20.6 1.6E+02 0.0035 22.4 3.6 26 8-33 6-31 (230)
353 smart00834 CxxC_CXXC_SSSS Puta 20.6 32 0.0007 18.5 -0.1 11 124-134 26-36 (41)
354 COG3115 ZipA Cell division pro 20.1 1.7E+02 0.0037 24.1 3.9 18 5-22 3-20 (324)
355 COG4306 Uncharacterized protei 20.1 48 0.0011 23.5 0.7 25 111-138 29-53 (160)
356 PLN02195 cellulose synthase A 20.1 1.3E+02 0.0028 28.9 3.7 52 85-136 5-60 (977)
357 PF09237 GAGA: GAGA factor; I 20.0 37 0.00081 20.1 0.1 10 126-135 26-35 (54)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=3.6e-19 Score=144.36 Aligned_cols=87 Identities=36% Similarity=0.767 Sum_probs=73.3
Q ss_pred CCCCCHHHHhhCCCccccccccCCCCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCc-cccccccccCCC
Q 029544 60 INGLEPVLVAAIPTMKFNQEAFKSVEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTT-CPVCRLPLQDPL 138 (191)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~-CP~Cr~~~~~~~ 138 (191)
...+.+..++.+|..++......... ..|+||+|+|..++.++.|| |+|.||..||++||.++.+ ||+||.++....
T Consensus 204 ~~r~~k~~l~~~p~~~f~~~~~~~~~-~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~ 281 (348)
T KOG4628|consen 204 RNRLIKRLLKKLPVRTFTKGDDEDAT-DTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDS 281 (348)
T ss_pred hhhhHHHHHhhCCcEEeccccccCCC-ceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCCC
Confidence 35677888999999999876655544 78999999999999999998 9999999999999998865 999999998887
Q ss_pred CCCCcccccc
Q 029544 139 GRKHAREATF 148 (191)
Q Consensus 139 ~~~~~~~~~~ 148 (191)
+.....+.+.
T Consensus 282 ~~~~~~e~tp 291 (348)
T KOG4628|consen 282 GSEPVSEDTP 291 (348)
T ss_pred CCCCccCCCc
Confidence 7766555333
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.51 E-value=5.2e-15 Score=86.40 Aligned_cols=43 Identities=53% Similarity=1.328 Sum_probs=39.4
Q ss_pred cCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCcccccc
Q 029544 88 ECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCR 131 (191)
Q Consensus 88 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr 131 (191)
+|+||++.+.....+..++ |+|.||.+|+.+|+..+.+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 6999999999888888887 999999999999999989999997
No 3
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.38 E-value=4e-13 Score=104.80 Aligned_cols=77 Identities=36% Similarity=0.816 Sum_probs=57.1
Q ss_pred CCCCCHHHHhhCCCccccccc-cCCCCCCcCcccccccccCcc----EEEcCCCCCcccHhhHHHHhcCCCccccccccc
Q 029544 60 INGLEPVLVAAIPTMKFNQEA-FKSVEDAECSICLGEYQDKEV----LRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPL 134 (191)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~C~IC~~~~~~~~~----~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~ 134 (191)
..+..+..+..+|.....-+. .....+.+|+||++.+.++.. ...+++|+|.||..||.+|+..+.+||+||..+
T Consensus 147 k~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~ 226 (238)
T PHA02929 147 KGKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPF 226 (238)
T ss_pred hcchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEe
Confidence 345567778888877544222 233456789999998776431 234557999999999999999999999999987
Q ss_pred cC
Q 029544 135 QD 136 (191)
Q Consensus 135 ~~ 136 (191)
..
T Consensus 227 ~~ 228 (238)
T PHA02929 227 IS 228 (238)
T ss_pred eE
Confidence 64
No 4
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.29 E-value=2.5e-12 Score=83.10 Aligned_cols=45 Identities=42% Similarity=1.037 Sum_probs=35.1
Q ss_pred CCcCcccccccccC----------ccEEEcCCCCCcccHhhHHHHhcCCCcccccc
Q 029544 86 DAECSICLGEYQDK----------EVLRIMPQCGHSFHLACIDIWLRKKTTCPVCR 131 (191)
Q Consensus 86 ~~~C~IC~~~~~~~----------~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr 131 (191)
+..|+||++.+.++ ..+... .|+|.||..||.+|+..+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~-~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWG-PCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEE-TTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEec-ccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 44599999999432 233334 5999999999999999999999997
No 5
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=5.2e-12 Score=99.31 Aligned_cols=53 Identities=32% Similarity=0.745 Sum_probs=46.7
Q ss_pred CCCCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCCC
Q 029544 82 KSVEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDPL 138 (191)
Q Consensus 82 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~ 138 (191)
..+....|.+|++...++..+ +|||+||+.||..|...+..||+||..+...+
T Consensus 235 i~~a~~kC~LCLe~~~~pSaT----pCGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRSNPSAT----PCGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCCCCCceEEEecCCCCCCcC----cCcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 345677899999999999888 89999999999999999889999999887543
No 6
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.25 E-value=8.9e-12 Score=93.66 Aligned_cols=54 Identities=35% Similarity=0.772 Sum_probs=43.5
Q ss_pred CCCCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcC----------------CCccccccccccCCCC
Q 029544 82 KSVEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK----------------KTTCPVCRLPLQDPLG 139 (191)
Q Consensus 82 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~----------------~~~CP~Cr~~~~~~~~ 139 (191)
+..++.+|+||++.+.++..+ .|||.||..||..|+.. ...||+||..+....-
T Consensus 14 ~~~~~~~CpICld~~~dPVvT----~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~L 83 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDPVVT----LCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATL 83 (193)
T ss_pred cCCCccCCccCCCcCCCcEEc----CCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcE
Confidence 334578899999999888665 69999999999999852 2469999999976543
No 7
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=4.9e-11 Score=96.69 Aligned_cols=52 Identities=38% Similarity=1.060 Sum_probs=42.0
Q ss_pred CCCCCcCcccccc-cccC---------ccEEEcCCCCCcccHhhHHHHhcCCCcccccccccc
Q 029544 83 SVEDAECSICLGE-YQDK---------EVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQ 135 (191)
Q Consensus 83 ~~~~~~C~IC~~~-~~~~---------~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~ 135 (191)
...|..|.||+++ +..+ ....++| |||++|.+|++.|++++.+||.||.++.
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCccc
Confidence 4567889999999 4433 1223565 9999999999999999999999999954
No 8
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.7e-11 Score=96.94 Aligned_cols=50 Identities=40% Similarity=1.115 Sum_probs=44.7
Q ss_pred CCcCcccccccccCccEEEcCCCCCcccHhhHHHHhc-CCCccccccccccC
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR-KKTTCPVCRLPLQD 136 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~-~~~~CP~Cr~~~~~ 136 (191)
.-+|+||+++|...++++.+| |.|.||..|+++|+. -+..||+||.+++.
T Consensus 323 GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 467999999999888999997 999999999999998 55679999998864
No 9
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1e-10 Score=89.54 Aligned_cols=54 Identities=31% Similarity=0.656 Sum_probs=45.8
Q ss_pred CCCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcC---CCccccccccccCCCCC
Q 029544 83 SVEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK---KTTCPVCRLPLQDPLGR 140 (191)
Q Consensus 83 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~---~~~CP~Cr~~~~~~~~~ 140 (191)
....++|.|||+.-++++.+ .|||.||+-||-+|+.. .+.||+||..+...+-.
T Consensus 44 ~~~~FdCNICLd~akdPVvT----lCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vv 100 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVT----LCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVV 100 (230)
T ss_pred CCCceeeeeeccccCCCEEe----ecccceehHHHHHHHhhcCCCeeCCccccccccceEE
Confidence 45678999999999999888 79999999999999983 34599999998876543
No 10
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=3.8e-11 Score=88.24 Aligned_cols=55 Identities=29% Similarity=0.702 Sum_probs=45.1
Q ss_pred cCCCCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCC
Q 029544 81 FKSVEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDP 137 (191)
Q Consensus 81 ~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 137 (191)
...+....|+|||+.+.....+. .+|||+||+.||+..++....||+|++.+...
T Consensus 126 ~~~~~~~~CPiCl~~~sek~~vs--TkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 126 LRKEGTYKCPICLDSVSEKVPVS--TKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred cccccccCCCceecchhhccccc--cccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 34456688999999998776431 27999999999999999999999999877643
No 11
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.09 E-value=5e-11 Score=71.34 Aligned_cols=46 Identities=41% Similarity=1.012 Sum_probs=37.7
Q ss_pred CCcCcccccccccCccEEEcCCCCCc-ccHhhHHHHhcCCCcccccccccc
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGHS-FHLACIDIWLRKKTTCPVCRLPLQ 135 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~wl~~~~~CP~Cr~~~~ 135 (191)
+..|.||++...+.... +|||. ||..|+..|+.....||+||.++.
T Consensus 2 ~~~C~iC~~~~~~~~~~----pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLL----PCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEE----TTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEEe----CCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 46799999987764444 69999 999999999999999999999875
No 12
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.04 E-value=8e-11 Score=66.72 Aligned_cols=39 Identities=51% Similarity=1.171 Sum_probs=31.7
Q ss_pred CcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccc
Q 029544 89 CSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVC 130 (191)
Q Consensus 89 C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~C 130 (191)
|+||++.+.++.. .+ +|||.||..|+.+|+..+..||+|
T Consensus 1 C~iC~~~~~~~~~--~~-~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVV--VT-PCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEE--EC-TTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCE--EC-CCCCchhHHHHHHHHHCcCCCcCC
Confidence 7899999988532 23 699999999999999998889987
No 13
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.02 E-value=1.4e-10 Score=66.71 Aligned_cols=38 Identities=39% Similarity=1.014 Sum_probs=30.2
Q ss_pred CcccccccccCccEEEcCCCCCcccHhhHHHHhcCC----Cccccc
Q 029544 89 CSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKK----TTCPVC 130 (191)
Q Consensus 89 C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~----~~CP~C 130 (191)
|+||++.|.++..+ +|||.||..||..|+... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l----~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSL----PCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-----SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCcccc----CCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999988 899999999999999843 359987
No 14
>PHA02926 zinc finger-like protein; Provisional
Probab=99.00 E-value=2.1e-10 Score=87.39 Aligned_cols=56 Identities=30% Similarity=0.864 Sum_probs=42.1
Q ss_pred CCCCCCcCcccccccccC-----ccEEEcCCCCCcccHhhHHHHhcCC------CccccccccccCC
Q 029544 82 KSVEDAECSICLGEYQDK-----EVLRIMPQCGHSFHLACIDIWLRKK------TTCPVCRLPLQDP 137 (191)
Q Consensus 82 ~~~~~~~C~IC~~~~~~~-----~~~~~~~~C~H~f~~~Ci~~wl~~~------~~CP~Cr~~~~~~ 137 (191)
....+.+|+||++....+ .....+++|+|.||..||..|...+ .+||+||..+...
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I 232 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNI 232 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeee
Confidence 345667899999986432 2334566899999999999998742 3599999887643
No 15
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.92 E-value=6.2e-10 Score=72.76 Aligned_cols=50 Identities=38% Similarity=0.907 Sum_probs=38.0
Q ss_pred CCCcCcccccccccCc----------cEEEcCCCCCcccHhhHHHHhcC---CCcccccccccc
Q 029544 85 EDAECSICLGEYQDKE----------VLRIMPQCGHSFHLACIDIWLRK---KTTCPVCRLPLQ 135 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~----------~~~~~~~C~H~f~~~Ci~~wl~~---~~~CP~Cr~~~~ 135 (191)
++..|.||+..|...- .+ ....|+|.||.+||.+|+.. +..||+||+++.
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cpl-v~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPL-VWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCce-eeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 4678999998887321 22 22369999999999999985 356999999875
No 16
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.92 E-value=7.6e-10 Score=63.99 Aligned_cols=44 Identities=55% Similarity=1.315 Sum_probs=35.2
Q ss_pred cCcccccccccCccEEEcCCCCCcccHhhHHHHhcC-CCccccccccc
Q 029544 88 ECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK-KTTCPVCRLPL 134 (191)
Q Consensus 88 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~-~~~CP~Cr~~~ 134 (191)
.|+||++.+.....+ . +|+|.||..|+..|+.. ...||+|+..+
T Consensus 1 ~C~iC~~~~~~~~~~--~-~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVL--L-PCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEe--c-CCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 499999998443333 3 49999999999999986 66799999754
No 17
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.85 E-value=2.4e-09 Score=62.21 Aligned_cols=44 Identities=34% Similarity=0.902 Sum_probs=35.8
Q ss_pred cCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccc
Q 029544 88 ECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRL 132 (191)
Q Consensus 88 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~ 132 (191)
.|++|++.|........+ +|||+||..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~-~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLT-SCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEc-ccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 499999999555555556 49999999999999856667999984
No 18
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.83 E-value=2.5e-09 Score=66.88 Aligned_cols=46 Identities=30% Similarity=0.541 Sum_probs=40.6
Q ss_pred CcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccC
Q 029544 87 AECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 87 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
..|+||.+.+.++..+ +|||+|+..||.+|+..+..||+|+.++..
T Consensus 2 ~~Cpi~~~~~~~Pv~~----~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDPVIL----PSGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCCEEC----CCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 4699999999998555 699999999999999988889999988753
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.82 E-value=1.6e-09 Score=61.99 Aligned_cols=39 Identities=41% Similarity=1.140 Sum_probs=32.9
Q ss_pred CcccccccccCccEEEcCCCCCcccHhhHHHHhc--CCCccccc
Q 029544 89 CSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR--KKTTCPVC 130 (191)
Q Consensus 89 C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~--~~~~CP~C 130 (191)
|+||++.+..+. ..+ +|+|.||..|+.+|+. ....||+|
T Consensus 1 C~iC~~~~~~~~--~~~-~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILL-PCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE--EET-TTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC--EEe-cCCCcchHHHHHHHHHhcCCccCCcC
Confidence 789999998887 233 6999999999999998 55569987
No 20
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=4.1e-09 Score=92.42 Aligned_cols=53 Identities=38% Similarity=0.876 Sum_probs=43.2
Q ss_pred CCCCcCcccccccccCcc--EEEcCCCCCcccHhhHHHHhcCCCccccccccccCC
Q 029544 84 VEDAECSICLGEYQDKEV--LRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDP 137 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~--~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 137 (191)
..+..|+||++.+..+.. ..++ +|+|+||..|+..|+++..+||+||..+...
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL-~C~Hifh~~CL~~W~er~qtCP~CR~~~~~~ 343 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRL-PCGHIFHDSCLRSWFERQQTCPTCRTVLYDY 343 (543)
T ss_pred hcCCeeeeechhhcccccccccee-ecccchHHHHHHHHHHHhCcCCcchhhhhcc
Confidence 447789999999988532 3344 5999999999999999999999999955443
No 21
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.77 E-value=4.5e-09 Score=87.81 Aligned_cols=51 Identities=27% Similarity=0.614 Sum_probs=44.3
Q ss_pred CCCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCC
Q 029544 83 SVEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDP 137 (191)
Q Consensus 83 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 137 (191)
......|+||++.|..+..+ +|+|.||..|+..|+.....||+|+..+...
T Consensus 23 Le~~l~C~IC~d~~~~Pvit----pCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVPVLT----SCSHTFCSLCIRRCLSNQPKCPLCRAEDQES 73 (397)
T ss_pred cccccCCCcCchhhhCccCC----CCCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence 34567899999999988765 6999999999999999888899999988753
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.68 E-value=1.3e-08 Score=56.66 Aligned_cols=38 Identities=53% Similarity=1.276 Sum_probs=30.5
Q ss_pred CcccccccccCccEEEcCCCCCcccHhhHHHHhc-CCCccccc
Q 029544 89 CSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR-KKTTCPVC 130 (191)
Q Consensus 89 C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~-~~~~CP~C 130 (191)
|+||++.......+ +|+|.||..|++.|+. ....||+|
T Consensus 1 C~iC~~~~~~~~~~----~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVL----PCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEe----cCCChHHHHHHHHHHHhCcCCCCCC
Confidence 78999885444344 5999999999999998 55669987
No 23
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.59 E-value=1.2e-08 Score=82.17 Aligned_cols=51 Identities=25% Similarity=0.622 Sum_probs=46.0
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCCCC
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDPLG 139 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 139 (191)
.-..|.||.+.|..+..+ +|+|.||..||+.+|..+..||.|+.++.+..-
T Consensus 22 ~lLRC~IC~eyf~ip~it----pCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~L 72 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMIT----PCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDL 72 (442)
T ss_pred HHHHHhHHHHHhcCceec----cccchHHHHHHHHHhccCCCCCceecccchhhh
Confidence 456799999999999888 799999999999999999999999999987644
No 24
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=2e-08 Score=78.33 Aligned_cols=50 Identities=38% Similarity=0.868 Sum_probs=42.4
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHH-HhcCCCc-cccccccccCC
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDI-WLRKKTT-CPVCRLPLQDP 137 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~-wl~~~~~-CP~Cr~~~~~~ 137 (191)
..+..|+||++....+..+ +|||+||..||.. |-.++.. ||+||+.....
T Consensus 213 ~~d~kC~lC~e~~~~ps~t----~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCT----PCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred ccccceeeeecccCCcccc----cccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 3478899999999988888 7999999999999 8766665 99999876543
No 25
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=3.7e-08 Score=83.29 Aligned_cols=47 Identities=32% Similarity=0.678 Sum_probs=40.6
Q ss_pred CCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcC-----CCccccccccccC
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK-----KTTCPVCRLPLQD 136 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~-----~~~CP~Cr~~~~~ 136 (191)
+..|+||++....+..+ .|||+||..||.+++.. ...||+|+..+..
T Consensus 186 ~~~CPICL~~~~~p~~t----~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRT----NCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCccccc----ccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 67899999998888877 79999999999998863 3459999998876
No 26
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.50 E-value=7.3e-08 Score=61.55 Aligned_cols=30 Identities=40% Similarity=0.786 Sum_probs=27.7
Q ss_pred CCCCcccHhhHHHHhcCCCccccccccccC
Q 029544 107 QCGHSFHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 107 ~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
.|+|.||.+||.+||..+..||++|+++.-
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~ 82 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWVL 82 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence 599999999999999999999999998754
No 27
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.49 E-value=3.2e-08 Score=78.20 Aligned_cols=52 Identities=29% Similarity=0.469 Sum_probs=45.6
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCCCC
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDPLG 139 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 139 (191)
..-..|-||-+.+..+..+ .|||.||..||+..|..+..||+||.+..+...
T Consensus 23 Ds~lrC~IC~~~i~ip~~T----tCgHtFCslCIR~hL~~qp~CP~Cr~~~~esrl 74 (391)
T COG5432 23 DSMLRCRICDCRISIPCET----TCGHTFCSLCIRRHLGTQPFCPVCREDPCESRL 74 (391)
T ss_pred hhHHHhhhhhheeecceec----ccccchhHHHHHHHhcCCCCCccccccHHhhhc
Confidence 3456799999999998888 799999999999999999999999998876543
No 28
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=3e-08 Score=62.77 Aligned_cols=50 Identities=36% Similarity=0.784 Sum_probs=36.4
Q ss_pred CCCcCcccccccccCc----------cEEEcCCCCCcccHhhHHHHhcC---CCcccccccccc
Q 029544 85 EDAECSICLGEYQDKE----------VLRIMPQCGHSFHLACIDIWLRK---KTTCPVCRLPLQ 135 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~----------~~~~~~~C~H~f~~~Ci~~wl~~---~~~CP~Cr~~~~ 135 (191)
.+..|.||.-.|...- .+ +...|.|.||..||.+|+.. +..||+||+.+.
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPL-v~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPL-VWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCcc-HHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 4457999988876321 22 22259999999999999973 345999998774
No 29
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.34 E-value=2.9e-07 Score=59.36 Aligned_cols=49 Identities=29% Similarity=0.571 Sum_probs=39.1
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcC-CCccccccccccCC
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK-KTTCPVCRLPLQDP 137 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~-~~~CP~Cr~~~~~~ 137 (191)
+.+.|+|+.+.+.++..+ ++||.|...||..|+.. +..||+|+.++...
T Consensus 3 ~~f~CpIt~~lM~dPVi~----~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVIL----PSGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGGB-TTTSSB-SSEEEE----TTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred cccCCcCcCcHhhCceeC----CcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 356899999999999888 79999999999999998 88899999888753
No 30
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.33 E-value=3.5e-07 Score=52.56 Aligned_cols=33 Identities=33% Similarity=0.857 Sum_probs=20.1
Q ss_pred CcccccccccCc-cEEEcCCCCCcccHhhHHHHhcC
Q 029544 89 CSICLGEYQDKE-VLRIMPQCGHSFHLACIDIWLRK 123 (191)
Q Consensus 89 C~IC~~~~~~~~-~~~~~~~C~H~f~~~Ci~~wl~~ 123 (191)
|+||.+ +.+.. .-.+|+ |||.||.+|+++++..
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~ 34 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKK 34 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhc
Confidence 899999 76533 334565 9999999999999873
No 31
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.4e-07 Score=73.86 Aligned_cols=51 Identities=31% Similarity=0.661 Sum_probs=41.0
Q ss_pred CCCcCcccccccccCc-------cEEEcCCCCCcccHhhHHHHhc--CCCccccccccccC
Q 029544 85 EDAECSICLGEYQDKE-------VLRIMPQCGHSFHLACIDIWLR--KKTTCPVCRLPLQD 136 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~-------~~~~~~~C~H~f~~~Ci~~wl~--~~~~CP~Cr~~~~~ 136 (191)
++..|+||-..+.... .+..+. |+|+||..||+-|.. ++.+||.|+..+..
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence 4667999998876554 555664 999999999999976 66789999987754
No 32
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.31 E-value=5.2e-07 Score=72.85 Aligned_cols=52 Identities=29% Similarity=0.735 Sum_probs=37.9
Q ss_pred CCcCcccccc-cccCc-cEEEcCCCCCcccHhhHHHHhc-CCCccccccccccCCC
Q 029544 86 DAECSICLGE-YQDKE-VLRIMPQCGHSFHLACIDIWLR-KKTTCPVCRLPLQDPL 138 (191)
Q Consensus 86 ~~~C~IC~~~-~~~~~-~~~~~~~C~H~f~~~Ci~~wl~-~~~~CP~Cr~~~~~~~ 138 (191)
+..|++|... +.++. .+.+. .|||.||..|+...+. ....||.|+.++....
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~-~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccC-CCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 4579999995 33333 33333 4999999999999765 4456999998887543
No 33
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=3.4e-07 Score=77.09 Aligned_cols=51 Identities=33% Similarity=0.815 Sum_probs=37.4
Q ss_pred CCcCcccccccccCccE-------------EEcCCCCCcccHhhHHHHhc-CCCccccccccccC
Q 029544 86 DAECSICLGEYQDKEVL-------------RIMPQCGHSFHLACIDIWLR-KKTTCPVCRLPLQD 136 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~-------------~~~~~C~H~f~~~Ci~~wl~-~~~~CP~Cr~~~~~ 136 (191)
...|+||+..+.--.+. ..+.+|.|+||..|+.+|.. .+-.||+||.++..
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 45699999876521100 12225999999999999998 44479999998853
No 34
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.23 E-value=3.3e-07 Score=56.54 Aligned_cols=47 Identities=32% Similarity=0.665 Sum_probs=24.8
Q ss_pred CCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCC
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDP 137 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 137 (191)
-..|++|.+.+.++..+. .|.|+||..|+..-+. ..||+|+.+....
T Consensus 7 lLrCs~C~~~l~~pv~l~---~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~q 53 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLG---GCEHIFCSSCIRDCIG--SECPVCHTPAWIQ 53 (65)
T ss_dssp TTS-SSS-S--SS-B------SSS--B-TTTGGGGTT--TB-SSS--B-S-S
T ss_pred hcCCcHHHHHhcCCceec---cCccHHHHHHhHHhcC--CCCCCcCChHHHH
Confidence 457999999999997665 7999999999988654 3499999876543
No 35
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.21 E-value=6.2e-07 Score=74.79 Aligned_cols=51 Identities=31% Similarity=0.775 Sum_probs=40.1
Q ss_pred CCCCCCcCcccccccccCc-cEEEcCCCCCcccHhhHHHHhcCCCcccccccccc
Q 029544 82 KSVEDAECSICLGEYQDKE-VLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQ 135 (191)
Q Consensus 82 ~~~~~~~C~IC~~~~~~~~-~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~ 135 (191)
...+..+|+|||+.+.... .+... .|.|.||..|+..|. ..+||+||.-..
T Consensus 171 ~~tELPTCpVCLERMD~s~~gi~t~-~c~Hsfh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 171 GLTELPTCPVCLERMDSSTTGILTI-LCNHSFHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred CcccCCCcchhHhhcCccccceeee-ecccccchHHHhhcc--cCcChhhhhhcC
Confidence 4456678999999998776 22333 599999999999995 467999997665
No 36
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.18 E-value=1.2e-06 Score=51.87 Aligned_cols=42 Identities=29% Similarity=0.831 Sum_probs=30.6
Q ss_pred cCcccccccccCccEEEcCCCC-----CcccHhhHHHHhcC--CCcccccc
Q 029544 88 ECSICLGEYQDKEVLRIMPQCG-----HSFHLACIDIWLRK--KTTCPVCR 131 (191)
Q Consensus 88 ~C~IC~~~~~~~~~~~~~~~C~-----H~f~~~Ci~~wl~~--~~~CP~Cr 131 (191)
.|.||++...+. .....| |. |.+|..|+.+|+.. +..||+|+
T Consensus 1 ~CrIC~~~~~~~-~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEG-DPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCC-CeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 389999833333 333565 85 88999999999964 44799995
No 37
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=1.3e-06 Score=71.10 Aligned_cols=53 Identities=34% Similarity=0.731 Sum_probs=43.6
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCc-ccHhhHHHHhcCCCccccccccccCCCCC
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHS-FHLACIDIWLRKKTTCPVCRLPLQDPLGR 140 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~wl~~~~~CP~Cr~~~~~~~~~ 140 (191)
++..+|.||+.+..+...+ +|.|. .|..|.+..-.+++.||+||+++.+....
T Consensus 288 ~~gkeCVIClse~rdt~vL----PCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i 341 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVL----PCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEI 341 (349)
T ss_pred cCCCeeEEEecCCcceEEe----cchhhehhHhHHHHHHHhhcCCCccccchHhhhee
Confidence 4467899999988776555 69996 89999999877889999999999876543
No 38
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=7.6e-07 Score=78.75 Aligned_cols=49 Identities=27% Similarity=0.731 Sum_probs=42.8
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhc-CCCccccccccccCC
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR-KKTTCPVCRLPLQDP 137 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~-~~~~CP~Cr~~~~~~ 137 (191)
....|+.|-..+.+...+ .|+|.||..|+...+. ++..||.|...|...
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~----kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFgan 691 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVIT----KCGHVFCEECVQTRYETRQRKCPKCNAAFGAN 691 (698)
T ss_pred hceeCCCccCchhhHHHH----hcchHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 456799999999988877 8999999999999887 677899999998754
No 39
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=6.4e-07 Score=53.08 Aligned_cols=47 Identities=34% Similarity=0.770 Sum_probs=37.5
Q ss_pred CCcCcccccccccCccEEEcCCCCCc-ccHhhHHHHhc-CCCccccccccccC
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGHS-FHLACIDIWLR-KKTTCPVCRLPLQD 136 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~wl~-~~~~CP~Cr~~~~~ 136 (191)
+.+|.||++...+...- -|||. .|..|-.+.++ .+..||+||+++..
T Consensus 7 ~dECTICye~pvdsVlY----tCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 7 SDECTICYEHPVDSVLY----TCGHMCMCYACGLRLKKALHGCCPICRAPIKD 55 (62)
T ss_pred ccceeeeccCcchHHHH----HcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence 36899999987776655 69996 89999776665 67789999998753
No 40
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1.3e-06 Score=58.67 Aligned_cols=29 Identities=34% Similarity=0.950 Sum_probs=26.7
Q ss_pred CCCCcccHhhHHHHhcCCCcccccccccc
Q 029544 107 QCGHSFHLACIDIWLRKKTTCPVCRLPLQ 135 (191)
Q Consensus 107 ~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~ 135 (191)
.|+|.||..||.+||+....||+|.++..
T Consensus 80 ~CNHaFH~hCisrWlktr~vCPLdn~eW~ 108 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNVCPLDNKEWV 108 (114)
T ss_pred ecchHHHHHHHHHHHhhcCcCCCcCccee
Confidence 59999999999999999999999988754
No 41
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1.6e-06 Score=69.85 Aligned_cols=46 Identities=37% Similarity=0.839 Sum_probs=38.5
Q ss_pred CCCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccc
Q 029544 83 SVEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRL 132 (191)
Q Consensus 83 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~ 132 (191)
..+...|+||++.|..+..+ +|+|.||..|+..++.....||.||.
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l----~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLL----PCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcCccc----cccchHhHHHHHHhcCCCcCCcccCC
Confidence 34677899999999999333 59999999999999885556999993
No 42
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.05 E-value=1.4e-06 Score=78.55 Aligned_cols=53 Identities=25% Similarity=0.669 Sum_probs=39.0
Q ss_pred CCCCCcCccccccccc---CccEEEcCCCCCcccHhhHHHHhc--CCCcccccccccc
Q 029544 83 SVEDAECSICLGEYQD---KEVLRIMPQCGHSFHLACIDIWLR--KKTTCPVCRLPLQ 135 (191)
Q Consensus 83 ~~~~~~C~IC~~~~~~---~~~~~~~~~C~H~f~~~Ci~~wl~--~~~~CP~Cr~~~~ 135 (191)
.+...+|+||+..+.- ...-.+.+.|.|.||..|+-+|+. .+++||+||..++
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 3556789999987651 112233446999999999999998 4556999997764
No 43
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.04 E-value=1.3e-06 Score=55.87 Aligned_cols=50 Identities=36% Similarity=0.923 Sum_probs=23.0
Q ss_pred CCcCcccccccc-cCcc-EEEc--CCCCCcccHhhHHHHhcC---C--------Ccccccccccc
Q 029544 86 DAECSICLGEYQ-DKEV-LRIM--PQCGHSFHLACIDIWLRK---K--------TTCPVCRLPLQ 135 (191)
Q Consensus 86 ~~~C~IC~~~~~-~~~~-~~~~--~~C~H~f~~~Ci~~wl~~---~--------~~CP~Cr~~~~ 135 (191)
+.+|.||+.... .+.. .... +.|++.||..|+.+|+.. . ..||.|+.++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 357999999865 2221 1222 369999999999999871 1 13999998875
No 44
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=6.4e-07 Score=72.71 Aligned_cols=51 Identities=31% Similarity=0.612 Sum_probs=42.0
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhc-CCCccccccccccCC
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR-KKTTCPVCRLPLQDP 137 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~-~~~~CP~Cr~~~~~~ 137 (191)
..+..|+||++.++....+. .|.|.||.+||..-+. .++.||.||+.+...
T Consensus 41 ~~~v~c~icl~llk~tmttk---eClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKTMTTK---ECLHRFCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhhhccHHHHHHHHhhcccH---HHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 34678999999998776654 7999999999988877 566799999988653
No 45
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=2.9e-06 Score=69.73 Aligned_cols=49 Identities=37% Similarity=0.970 Sum_probs=35.9
Q ss_pred CcCcccccccccCccEEEcCCCCCcccHhhHHHHhc---CCCcccccccccc
Q 029544 87 AECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR---KKTTCPVCRLPLQ 135 (191)
Q Consensus 87 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~---~~~~CP~Cr~~~~ 135 (191)
-.|.||.+-+.....+.-...|||+||..|+.+|+. .+..||.|+-.+.
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~ 56 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ 56 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence 369999666555555544435999999999999998 3357999994333
No 46
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=5e-06 Score=68.47 Aligned_cols=52 Identities=38% Similarity=1.003 Sum_probs=40.7
Q ss_pred CCCCcCcccccccccCc----cEEEcCCCCCcccHhhHHHHhc--C-----CCcccccccccc
Q 029544 84 VEDAECSICLGEYQDKE----VLRIMPQCGHSFHLACIDIWLR--K-----KTTCPVCRLPLQ 135 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~----~~~~~~~C~H~f~~~Ci~~wl~--~-----~~~CP~Cr~~~~ 135 (191)
..+..|.||++...... ...++|+|.|.||..||..|-. + .+.||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 45778999999876654 2345678999999999999973 3 467999997654
No 47
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=6.2e-06 Score=65.73 Aligned_cols=50 Identities=34% Similarity=0.685 Sum_probs=40.2
Q ss_pred CCcCcccccccccCccEEEcCCCCCcccHhhHHHHhc-CCCccccccccccCCCC
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR-KKTTCPVCRLPLQDPLG 139 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~-~~~~CP~Cr~~~~~~~~ 139 (191)
..+|+||+....-+..+ .|+|.||..||+--.. ....|++||.++.+.-.
T Consensus 7 ~~eC~IC~nt~n~Pv~l----~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~ 57 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNL----YCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTID 57 (324)
T ss_pred CCcceeeeccCCcCccc----cccchhhhhhhcchhhcCCCCCceecCCCCcchh
Confidence 44799999988877555 6999999999987665 44559999999986543
No 48
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.68 E-value=8.1e-06 Score=72.44 Aligned_cols=52 Identities=27% Similarity=0.504 Sum_probs=42.4
Q ss_pred CCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCCC
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDPL 138 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~ 138 (191)
...|++|+..+.+....... .|+|.||..|+..|-....+||+||..|....
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k-~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~ 174 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEK-HTAHYFCEECVGSWSRCAQTCPVDRGEFGEVK 174 (1134)
T ss_pred hhhhhHHHHHHHHHhhcccc-ccccccHHHHhhhhhhhcccCchhhhhhheee
Confidence 34588888887776555444 49999999999999999999999999887653
No 49
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=3.9e-05 Score=64.51 Aligned_cols=50 Identities=38% Similarity=0.772 Sum_probs=44.5
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCC
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDP 137 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 137 (191)
..++.|.||+..+..+..+ +|||.||..|+.+-+.....||.||..+.+.
T Consensus 82 ~sef~c~vc~~~l~~pv~t----pcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~ 131 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVT----PCGHSFCLECLDRSLDQETECPLCRDELVEL 131 (398)
T ss_pred cchhhhhhhHhhcCCCccc----cccccccHHHHHHHhccCCCCcccccccccc
Confidence 5678899999999999888 7999999999999888777799999999864
No 50
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.57 E-value=3.9e-05 Score=46.88 Aligned_cols=42 Identities=29% Similarity=0.670 Sum_probs=28.7
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhc--CCCcccc
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR--KKTTCPV 129 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~--~~~~CP~ 129 (191)
-...|+|.+..|.++.... .|+|.|-++.|.+|+. ....||+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~---~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSK---KCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEES---SS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcC---CCCCeecHHHHHHHHHhcCCCCCCC
Confidence 4567999999999987654 6999999999999994 3445998
No 51
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.51 E-value=3e-05 Score=61.87 Aligned_cols=54 Identities=28% Similarity=0.733 Sum_probs=42.9
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhc-----------------------CCCccccccccccCCCC
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR-----------------------KKTTCPVCRLPLQDPLG 139 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~-----------------------~~~~CP~Cr~~~~~~~~ 139 (191)
....|+|||.-|.......+++ |.|.||..|+.++|. ....||+||..+.....
T Consensus 114 p~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~ 190 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEEN 190 (368)
T ss_pred CCCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccccc
Confidence 3567999999999998777776 999999999987764 11249999998875443
No 52
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=6.7e-05 Score=62.23 Aligned_cols=49 Identities=41% Similarity=0.897 Sum_probs=37.0
Q ss_pred CCcCcccccccccCccEE-EcCCCCCcccHhhHHHHhcC--CCccccccccc
Q 029544 86 DAECSICLGEYQDKEVLR-IMPQCGHSFHLACIDIWLRK--KTTCPVCRLPL 134 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~-~~~~C~H~f~~~Ci~~wl~~--~~~CP~Cr~~~ 134 (191)
...|+||++.+..+...+ ..+.|||.|..+||+.|+.+ ...||.|...-
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 457999999988665332 34469999999999999962 22499998643
No 53
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.43 E-value=2.4e-05 Score=63.26 Aligned_cols=51 Identities=25% Similarity=0.668 Sum_probs=44.3
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCC
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDP 137 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 137 (191)
.....|.+|-..+.++..+. .|-|.||+.||..++...+.||.|...+...
T Consensus 13 n~~itC~LC~GYliDATTI~---eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATTIT---ECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred ccceehhhccceeecchhHH---HHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 34567999999999987775 7999999999999999999999999877654
No 54
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.34 E-value=0.00013 Score=61.73 Aligned_cols=54 Identities=31% Similarity=0.633 Sum_probs=45.7
Q ss_pred CCCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCCCC
Q 029544 83 SVEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDPLG 139 (191)
Q Consensus 83 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 139 (191)
..++..|++|...+.++... . .|||.||..|+..|+..+..||.|+..+.....
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~--~-~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~ 71 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQT--T-TCGHRFCAGCLLESLSNHQKCPVCRQELTQAEE 71 (391)
T ss_pred CcccccCccccccccCCCCC--C-CCCCcccccccchhhccCcCCcccccccchhhc
Confidence 35667899999999999874 1 699999999999999998899999887775543
No 55
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.00055 Score=55.42 Aligned_cols=48 Identities=29% Similarity=0.593 Sum_probs=39.2
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccc
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPL 134 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~ 134 (191)
.....|++|+....++..+. --|-+||+.|+..++..+..||+=..+.
T Consensus 298 ~~~~~CpvClk~r~Nptvl~---vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLE---VSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CccccChhHHhccCCCceEE---ecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 34557999999988887663 2689999999999999999999865544
No 56
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.29 E-value=9.2e-05 Score=55.79 Aligned_cols=46 Identities=33% Similarity=0.619 Sum_probs=40.8
Q ss_pred CcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccC
Q 029544 87 AECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 87 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
+.|.||-.+|..++.+ .|||.||..|...-+.....|-+|.+....
T Consensus 197 F~C~iCKkdy~spvvt----~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G 242 (259)
T COG5152 197 FLCGICKKDYESPVVT----ECGHSFCSLCAIRKYQKGDECGVCGKATYG 242 (259)
T ss_pred eeehhchhhccchhhh----hcchhHHHHHHHHHhccCCcceecchhhcc
Confidence 4699999999999888 899999999999888888889999876543
No 57
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.00018 Score=56.79 Aligned_cols=49 Identities=29% Similarity=0.623 Sum_probs=39.5
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhc--CCCcccccccccc
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR--KKTTCPVCRLPLQ 135 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~--~~~~CP~Cr~~~~ 135 (191)
..+.+|++|-+.-..|.... +|+|+||+.|+..-.. ...+||.|..+..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~---~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIG---KCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeec---cccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 45678999999888776663 5999999999988765 3467999987665
No 58
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.27 E-value=0.00012 Score=60.78 Aligned_cols=46 Identities=33% Similarity=0.871 Sum_probs=35.1
Q ss_pred cCcccccccccCccEEEcCCCCCcccHhhHHHHhcC--CCccccccccccCC
Q 029544 88 ECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK--KTTCPVCRLPLQDP 137 (191)
Q Consensus 88 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~--~~~CP~Cr~~~~~~ 137 (191)
-|-||-+.-++ +.+- +|||..|..|+..|-.. ...||.||.++...
T Consensus 371 LCKICaendKd---vkIE-PCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 371 LCKICAENDKD---VKIE-PCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHhhccCCC---cccc-cccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 39999886443 3334 59999999999999753 56799999987643
No 59
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.00045 Score=56.52 Aligned_cols=50 Identities=26% Similarity=0.520 Sum_probs=42.8
Q ss_pred CCCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccC
Q 029544 83 SVEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 83 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
+.++..|+||+-.-.+.... +|+|.-|+.||.+.+.+.+.|=.|+..+..
T Consensus 419 ~sEd~lCpICyA~pi~Avf~----PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 419 DSEDNLCPICYAGPINAVFA----PCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred CcccccCcceecccchhhcc----CCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 36677899999876666555 799999999999999999999999988764
No 60
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.08 E-value=0.00023 Score=60.99 Aligned_cols=50 Identities=30% Similarity=0.674 Sum_probs=41.4
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhc-----CCCccccccccccCC
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR-----KKTTCPVCRLPLQDP 137 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~-----~~~~CP~Cr~~~~~~ 137 (191)
.+...|.+|-+.-++.... .|.|.||..|+.+++. .+-+||+|...+.-.
T Consensus 534 k~~~~C~lc~d~aed~i~s----~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIES----SCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred cCceeecccCChhhhhHhh----hhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 4556799999998888888 7999999999999876 345699998877654
No 61
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.00 E-value=0.00049 Score=65.16 Aligned_cols=66 Identities=27% Similarity=0.630 Sum_probs=46.4
Q ss_pred hCCCccccccccCCCCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCC----------CccccccccccC
Q 029544 70 AIPTMKFNQEAFKSVEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKK----------TTCPVCRLPLQD 136 (191)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~----------~~CP~Cr~~~~~ 136 (191)
-+|-+...+.......+.-|.||+.+--.......+. |+|+||..|.+..|.+. -+||+|+.++..
T Consensus 3470 CLPCl~Cdks~tkQD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3470 CLPCLHCDKSATKQDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred cccccccChhhhhcccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 3555555444444456778999998866666666665 99999999987665522 249999987763
No 62
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.00029 Score=56.23 Aligned_cols=48 Identities=27% Similarity=0.510 Sum_probs=42.1
Q ss_pred CcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCCC
Q 029544 87 AECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDPL 138 (191)
Q Consensus 87 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~ 138 (191)
+.|-||...|..++.. .|+|.||..|...-++....|.+|.+.+....
T Consensus 242 f~c~icr~~f~~pVvt----~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~~ 289 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVT----KCGHYFCEVCALKPYQKGEKCYVCSQQTHGSF 289 (313)
T ss_pred ccccccccccccchhh----cCCceeehhhhccccccCCcceeccccccccc
Confidence 4599999999999988 89999999999888888888999988776543
No 63
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.00015 Score=59.37 Aligned_cols=46 Identities=28% Similarity=0.607 Sum_probs=33.5
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccC
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
.....|.||++...+...+ +|||..| |..-.. ....||+||..+..
T Consensus 303 ~~p~lcVVcl~e~~~~~fv----pcGh~cc--ct~cs~-~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKSAVFV----PCGHVCC--CTLCSK-HLPQCPVCRQRIRL 348 (355)
T ss_pred CCCCceEEecCCccceeee----cCCcEEE--chHHHh-hCCCCchhHHHHHH
Confidence 3455699999999887777 7999877 654432 23449999987653
No 64
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.0012 Score=50.93 Aligned_cols=51 Identities=24% Similarity=0.623 Sum_probs=41.0
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcC--------CCccccccccccCC
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK--------KTTCPVCRLPLQDP 137 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~--------~~~CP~Cr~~~~~~ 137 (191)
....|..|-..+..++.++. -|.|.||.+|+.+|-.. ...||-|..++...
T Consensus 49 Y~pNC~LC~t~La~gdt~RL--vCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp 107 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTRL--VCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPP 107 (299)
T ss_pred CCCCCceeCCccccCcceee--hhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCC
Confidence 45569999999998887754 49999999999999652 23499999988755
No 65
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.0014 Score=51.21 Aligned_cols=53 Identities=21% Similarity=0.394 Sum_probs=47.2
Q ss_pred CCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCCC
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDPL 138 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~ 138 (191)
.+.|++|.+.+.+......+.+|||+|+.+|.+.++.....||+|-.++.+..
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrd 273 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRD 273 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccc
Confidence 45699999999999988888889999999999999999899999998887653
No 66
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.69 E-value=0.00064 Score=56.31 Aligned_cols=49 Identities=35% Similarity=0.756 Sum_probs=37.7
Q ss_pred CCCcCcccccccccC-ccEEEcCCCCCcccHhhHHHHhcCC--Cccccccccc
Q 029544 85 EDAECSICLGEYQDK-EVLRIMPQCGHSFHLACIDIWLRKK--TTCPVCRLPL 134 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~-~~~~~~~~C~H~f~~~Ci~~wl~~~--~~CP~Cr~~~ 134 (191)
-+..|..|-+.+... +.+.-+| |.|+||..|+.+++.++ .+||.||+-.
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Crklr 415 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRKLR 415 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 355699999988754 3555665 99999999999999744 4599999433
No 67
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.0018 Score=54.11 Aligned_cols=48 Identities=23% Similarity=0.634 Sum_probs=37.8
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhc--------CCCcccccccc
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR--------KKTTCPVCRLP 133 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~--------~~~~CP~Cr~~ 133 (191)
.-..|.||++..........+| |+|+||..|+..++. +.-.||-+...
T Consensus 183 slf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred hcccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 3567999999988878888887 999999999999976 22248776643
No 68
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.43 E-value=0.0039 Score=49.93 Aligned_cols=54 Identities=24% Similarity=0.492 Sum_probs=43.9
Q ss_pred CCCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCC
Q 029544 83 SVEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDP 137 (191)
Q Consensus 83 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 137 (191)
....+.|||....|........+.+|||+|...++.+.- ....||+|-.++...
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEE 163 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccC
Confidence 355678999999997777676666799999999999973 355699999998754
No 69
>PHA02862 5L protein; Provisional
Probab=96.37 E-value=0.0026 Score=45.73 Aligned_cols=46 Identities=26% Similarity=0.771 Sum_probs=33.8
Q ss_pred CcCcccccccccCccEEEcCCCC-----CcccHhhHHHHhc--CCCccccccccccCC
Q 029544 87 AECSICLGEYQDKEVLRIMPQCG-----HSFHLACIDIWLR--KKTTCPVCRLPLQDP 137 (191)
Q Consensus 87 ~~C~IC~~~~~~~~~~~~~~~C~-----H~f~~~Ci~~wl~--~~~~CP~Cr~~~~~~ 137 (191)
..|-||.+.-.+.. - +|. ..-|.+|+.+|+. ++..|++|+.++.-.
T Consensus 3 diCWIC~~~~~e~~----~-PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 3 DICWICNDVCDERN----N-FCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred CEEEEecCcCCCCc----c-cccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 46999999854432 2 354 4589999999997 444599999988643
No 70
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.34 E-value=0.0036 Score=36.58 Aligned_cols=45 Identities=27% Similarity=0.637 Sum_probs=22.0
Q ss_pred CcccccccccCc-cEEEcCCCCCcccHhhHHHHhc-CCCccccccccc
Q 029544 89 CSICLGEYQDKE-VLRIMPQCGHSFHLACIDIWLR-KKTTCPVCRLPL 134 (191)
Q Consensus 89 C~IC~~~~~~~~-~~~~~~~C~H~f~~~Ci~~wl~-~~~~CP~Cr~~~ 134 (191)
|++|.+.+.... ...-- +|++..|..|+...+. ....||-||.++
T Consensus 1 cp~C~e~~d~~d~~~~PC-~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPC-ECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SS-TTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccC-cCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 678888874332 22222 5899999999999886 467799999875
No 71
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=96.29 E-value=0.004 Score=45.59 Aligned_cols=49 Identities=27% Similarity=0.663 Sum_probs=34.8
Q ss_pred CCCCcCcccccccccCccEEEcCCCCC-----cccHhhHHHHhcC--CCccccccccccCC
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGH-----SFHLACIDIWLRK--KTTCPVCRLPLQDP 137 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H-----~f~~~Ci~~wl~~--~~~CP~Cr~~~~~~ 137 (191)
..+..|-||.+..... . . +|.- .-|.+|+++|+.. ...|++|+.++.-.
T Consensus 6 ~~~~~CRIC~~~~~~~--~--~-PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 6 LMDKCCWICKDEYDVV--T--N-YCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCCeeEecCCCCCCc--c--C-CcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 3566899999885421 1 2 3554 4599999999984 44599999988644
No 72
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.29 E-value=0.0016 Score=46.33 Aligned_cols=35 Identities=23% Similarity=0.585 Sum_probs=26.8
Q ss_pred CCcCcccccccccCccEEEcCCCC------CcccHhhHHHHh
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCG------HSFHLACIDIWL 121 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~------H~f~~~Ci~~wl 121 (191)
..+|.||++.+.+...+..++ |+ |.||.+|+++|-
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHH
Confidence 567999999998833444443 55 789999999994
No 73
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.26 E-value=0.0029 Score=51.75 Aligned_cols=66 Identities=26% Similarity=0.503 Sum_probs=46.6
Q ss_pred HHHhhCCCccccccccCCCCCCcCcccccccccCccEEEcCCCCCcccHhhHHHH--hcCCCcccccccccc
Q 029544 66 VLVAAIPTMKFNQEAFKSVEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIW--LRKKTTCPVCRLPLQ 135 (191)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w--l~~~~~CP~Cr~~~~ 135 (191)
..+..-|..........+++...|.||-+.+.-...+ +|+|..|.-|..+. |...+.||+||....
T Consensus 41 NnlsaEPnlttsSaddtDEen~~C~ICA~~~TYs~~~----PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 41 NNLSAEPNLTTSSADDTDEENMNCQICAGSTTYSARY----PCGHQICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred cccccCCccccccccccccccceeEEecCCceEEEec----cCCchHHHHHHHHHHHHHhccCCCccccccc
Confidence 3445556665555555666677899999876544444 69999999997543 557788999997654
No 74
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.0016 Score=47.63 Aligned_cols=41 Identities=24% Similarity=0.678 Sum_probs=30.6
Q ss_pred CCccccccccCCCCCCcCcccccccccCccEEEcCCCCCcccH
Q 029544 72 PTMKFNQEAFKSVEDAECSICLGEYQDKEVLRIMPQCGHSFHL 114 (191)
Q Consensus 72 ~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~ 114 (191)
|.+.|++.. ......+|.||++++..+..+.++| |-.+||+
T Consensus 164 PrlsYNdDV-L~ddkGECvICLEdL~~GdtIARLP-CLCIYHK 204 (205)
T KOG0801|consen 164 PRLSYNDDV-LKDDKGECVICLEDLEAGDTIARLP-CLCIYHK 204 (205)
T ss_pred cccccccch-hcccCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence 344454322 2344568999999999999999998 9999886
No 75
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.0011 Score=53.00 Aligned_cols=43 Identities=30% Similarity=0.687 Sum_probs=33.8
Q ss_pred CCcCcccccccccCccEEEcCCCCC-cccHhhHHHHhcCCCccccccccccC
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGH-SFHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H-~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
+.-|.||++...+-..+ .||| +-|.+|-+.. +.||+||+.+..
T Consensus 300 ~~LC~ICmDaP~DCvfL----eCGHmVtCt~CGkrm----~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFL----ECGHMVTCTKCGKRM----NECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCCcceEEe----ecCcEEeehhhcccc----ccCchHHHHHHH
Confidence 55699999988777666 7999 5788887553 479999987653
No 76
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=95.90 E-value=0.0051 Score=55.67 Aligned_cols=52 Identities=31% Similarity=0.665 Sum_probs=40.4
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcC-------CCcccccccccc
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK-------KTTCPVCRLPLQ 135 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~-------~~~CP~Cr~~~~ 135 (191)
....+|.||++.+.....+.....|.|+||..||..|-.+ .-.||.|.....
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 3456799999999887777655569999999999999762 224999985443
No 77
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.90 E-value=0.0029 Score=49.32 Aligned_cols=46 Identities=20% Similarity=0.579 Sum_probs=32.3
Q ss_pred cCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCC
Q 029544 88 ECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDP 137 (191)
Q Consensus 88 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 137 (191)
.|.-|...-. +.....+ .|+|+||..|...- ....||+|+.++...
T Consensus 5 hCn~C~~~~~-~~~f~LT-aC~HvfC~~C~k~~--~~~~C~lCkk~ir~i 50 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLT-ACRHVFCEPCLKAS--SPDVCPLCKKSIRII 50 (233)
T ss_pred EeccccccCC-CCceeee-echhhhhhhhcccC--Cccccccccceeeee
Confidence 4777766544 5666556 59999999997553 222799999986543
No 78
>PHA03096 p28-like protein; Provisional
Probab=95.86 E-value=0.0039 Score=50.39 Aligned_cols=36 Identities=33% Similarity=0.793 Sum_probs=28.4
Q ss_pred CcCcccccccccCc----cEEEcCCCCCcccHhhHHHHhc
Q 029544 87 AECSICLGEYQDKE----VLRIMPQCGHSFHLACIDIWLR 122 (191)
Q Consensus 87 ~~C~IC~~~~~~~~----~~~~~~~C~H~f~~~Ci~~wl~ 122 (191)
..|.||++...... .-..++.|.|.||..|+..|-.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~ 218 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMT 218 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHH
Confidence 57999999866432 2235668999999999999976
No 79
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.0074 Score=49.08 Aligned_cols=48 Identities=29% Similarity=0.738 Sum_probs=37.0
Q ss_pred CcCcccccccccC--ccEEEcCCCCCcccHhhHHHHhcCCC-ccccccccc
Q 029544 87 AECSICLGEYQDK--EVLRIMPQCGHSFHLACIDIWLRKKT-TCPVCRLPL 134 (191)
Q Consensus 87 ~~C~IC~~~~~~~--~~~~~~~~C~H~f~~~Ci~~wl~~~~-~CP~Cr~~~ 134 (191)
..|-||-++|... ........|||.||..|+...+.... .||.||.+.
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 4699999999865 33333336999999999998877444 499999986
No 80
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.59 E-value=0.0063 Score=48.90 Aligned_cols=43 Identities=30% Similarity=0.681 Sum_probs=36.4
Q ss_pred CcCcccccccccCccEEEcCCCCCcccHhhHHHHhc-CCCccccccc
Q 029544 87 AECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR-KKTTCPVCRL 132 (191)
Q Consensus 87 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~-~~~~CP~Cr~ 132 (191)
..|+.|-..+.++..+ +.|+|.||.+||...|. ....||.|..
T Consensus 275 LkCplc~~Llrnp~kT---~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKT---PCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccC---ccccchHHHHHHhhhhhhccccCCCccc
Confidence 6799999999888776 37999999999997765 6667999976
No 81
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.56 E-value=0.0058 Score=41.82 Aligned_cols=33 Identities=33% Similarity=0.870 Sum_probs=25.7
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHH
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACID 118 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~ 118 (191)
.+...|++|-..+.++. ..+.| |||.||..|+.
T Consensus 76 ~~~~~C~vC~k~l~~~~-f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSV-FVVFP-CGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCce-EEEeC-CCeEEeccccc
Confidence 44667999999998854 33454 99999999975
No 82
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=95.43 E-value=0.015 Score=33.33 Aligned_cols=41 Identities=22% Similarity=0.637 Sum_probs=22.4
Q ss_pred CcccccccccCccEEEcCCCCCcccHhhHHHHhcCCC--ccccc
Q 029544 89 CSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKT--TCPVC 130 (191)
Q Consensus 89 C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~--~CP~C 130 (191)
|.+|.+....+..-... .|+-.+|..|+..++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~-~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNR-DCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCC-ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 55677666665544211 4888999999999998555 69987
No 83
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=95.38 E-value=0.014 Score=34.03 Aligned_cols=40 Identities=38% Similarity=1.008 Sum_probs=25.7
Q ss_pred CcccccccccCccEEEcCCCC--C---cccHhhHHHHhc--CCCccccc
Q 029544 89 CSICLGEYQDKEVLRIMPQCG--H---SFHLACIDIWLR--KKTTCPVC 130 (191)
Q Consensus 89 C~IC~~~~~~~~~~~~~~~C~--H---~f~~~Ci~~wl~--~~~~CP~C 130 (191)
|-||++.-.+...+ +.| |. - ..|.+|+.+|+. ....|++|
T Consensus 1 CrIC~~~~~~~~~l-i~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPL-ISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-E-E-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCce-ecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 67899887665533 233 64 2 579999999998 45568887
No 84
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.02 E-value=0.014 Score=35.02 Aligned_cols=43 Identities=28% Similarity=0.536 Sum_probs=29.9
Q ss_pred cCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccC
Q 029544 88 ECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 88 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
.|..|...-.....+ +|+|..|..|+.-+ +-+.||+|..++..
T Consensus 9 ~~~~~~~~~~~~~~~----pCgH~I~~~~f~~~--rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 9 PCVFCGFVGTKGTVL----PCGHLICDNCFPGE--RYNGCPFCGTPFEF 51 (55)
T ss_pred eEEEccccccccccc----cccceeeccccChh--hccCCCCCCCcccC
Confidence 466665544444344 69999999997654 44679999988754
No 85
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.00 E-value=0.011 Score=53.57 Aligned_cols=42 Identities=38% Similarity=0.822 Sum_probs=33.8
Q ss_pred CcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccc
Q 029544 87 AECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPL 134 (191)
Q Consensus 87 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~ 134 (191)
..|..|-..+..|...- .|||.||.+|+. .....||-|+.++
T Consensus 841 skCs~C~~~LdlP~VhF---~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHF---LCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeecccCCccccceeee---ecccHHHHHhhc---cCcccCCccchhh
Confidence 47999999988876443 699999999998 3455699999744
No 86
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=94.93 E-value=0.023 Score=47.36 Aligned_cols=28 Identities=32% Similarity=0.913 Sum_probs=21.0
Q ss_pred CCCcccHhhHHHHhc-------------CCCcccccccccc
Q 029544 108 CGHSFHLACIDIWLR-------------KKTTCPVCRLPLQ 135 (191)
Q Consensus 108 C~H~f~~~Ci~~wl~-------------~~~~CP~Cr~~~~ 135 (191)
|....|.+|+-+|+. .+-.||+||+.+-
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 445678999998875 2335999999875
No 87
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=94.42 E-value=0.032 Score=40.84 Aligned_cols=59 Identities=27% Similarity=0.563 Sum_probs=40.0
Q ss_pred CCcCcccccccccCccEEEcC--------CCCCc-ccHhhHHHHhcC-------------------------------CC
Q 029544 86 DAECSICLGEYQDKEVLRIMP--------QCGHS-FHLACIDIWLRK-------------------------------KT 125 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~--------~C~H~-f~~~Ci~~wl~~-------------------------------~~ 125 (191)
+..|+|||+.-.+.+.+.-.. -|+.. -|..|++++-+. .-
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 81 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPEL 81 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccccc
Confidence 567999999998887774211 25543 467899988530 12
Q ss_pred ccccccccccCCCCCCCcc
Q 029544 126 TCPVCRLPLQDPLGRKHAR 144 (191)
Q Consensus 126 ~CP~Cr~~~~~~~~~~~~~ 144 (191)
.||+||..+...+.+..+.
T Consensus 82 ~CPLCRG~V~GWtvve~AR 100 (162)
T PF07800_consen 82 ACPLCRGEVKGWTVVEPAR 100 (162)
T ss_pred cCccccCceeceEEchHHH
Confidence 3999999988766554433
No 88
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.28 E-value=0.019 Score=51.90 Aligned_cols=46 Identities=28% Similarity=0.766 Sum_probs=35.4
Q ss_pred CcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCC--CccccccccccCC
Q 029544 87 AECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKK--TTCPVCRLPLQDP 137 (191)
Q Consensus 87 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~--~~CP~Cr~~~~~~ 137 (191)
..|.+|++ ......+ .|+|.||..|+...+... ..||.||..+...
T Consensus 455 ~~c~ic~~-~~~~~it----~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFIT----RCGHDFCVECLKKSIQQSENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc-cccceee----cccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence 68999999 3443344 699999999999988732 2499999877654
No 89
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=94.27 E-value=0.011 Score=46.19 Aligned_cols=54 Identities=28% Similarity=0.676 Sum_probs=39.6
Q ss_pred CCCCcCcccccc-ccc-CccEEEcCCCCCcccHhhHHHHhcCC-Cccc--cccccccCC
Q 029544 84 VEDAECSICLGE-YQD-KEVLRIMPQCGHSFHLACIDIWLRKK-TTCP--VCRLPLQDP 137 (191)
Q Consensus 84 ~~~~~C~IC~~~-~~~-~~~~~~~~~C~H~f~~~Ci~~wl~~~-~~CP--~Cr~~~~~~ 137 (191)
..+..|++|-.+ |-+ ...+.+.|.|.|..|.+|.++.+... ..|| -|.+.+...
T Consensus 8 ~~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK~ 66 (314)
T COG5220 8 MEDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRKI 66 (314)
T ss_pred hhcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHh
Confidence 346689999875 334 44555666799999999999998744 4598 887766543
No 90
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=94.16 E-value=0.032 Score=32.28 Aligned_cols=44 Identities=30% Similarity=0.843 Sum_probs=25.5
Q ss_pred cCcccccccccCccEEEcCCCC-CcccHhhHHHHhcCCCccccccccccCC
Q 029544 88 ECSICLGEYQDKEVLRIMPQCG-HSFHLACIDIWLRKKTTCPVCRLPLQDP 137 (191)
Q Consensus 88 ~C~IC~~~~~~~~~~~~~~~C~-H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 137 (191)
.|--|+-. +...+ .|. |..|..|+...+.....||+|..+++..
T Consensus 4 nCKsCWf~--~k~Li----~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 4 NCKSCWFA--NKGLI----KCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp ---SS-S----SSEE----E-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred cChhhhhc--CCCee----eecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 36666643 33444 475 8999999999999999999999988643
No 91
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=94.06 E-value=0.039 Score=39.18 Aligned_cols=54 Identities=26% Similarity=0.525 Sum_probs=39.9
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhc---CCCccccccccccCCC
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR---KKTTCPVCRLPLQDPL 138 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~---~~~~CP~Cr~~~~~~~ 138 (191)
.-.+|.||.+...+...+.----||-..|..|....|+ .+..||+|+.++..+.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 56789999998766554432224999999999877666 5567999999887654
No 92
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=93.85 E-value=0.034 Score=44.64 Aligned_cols=46 Identities=26% Similarity=0.516 Sum_probs=37.1
Q ss_pred CcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccc
Q 029544 87 AECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRL 132 (191)
Q Consensus 87 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~ 132 (191)
..|+||.+.+..........+|||..|..|+......+-.||+|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 3499999987766544333369999999999999887788999998
No 93
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.84 E-value=0.034 Score=41.46 Aligned_cols=30 Identities=43% Similarity=1.100 Sum_probs=24.0
Q ss_pred CCCCcccHhhHHHHhcC-----CC------ccccccccccC
Q 029544 107 QCGHSFHLACIDIWLRK-----KT------TCPVCRLPLQD 136 (191)
Q Consensus 107 ~C~H~f~~~Ci~~wl~~-----~~------~CP~Cr~~~~~ 136 (191)
+||.-||.-|+..||.. +. .||.|-.++..
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 69999999999999872 11 39999887753
No 94
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=93.41 E-value=0.26 Score=27.17 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 029544 8 LITTVIGFGMSAAFIVFICTRIICRRIRGV 37 (191)
Q Consensus 8 ~v~~~i~~~~~~~li~~~~~~~~~~r~~~~ 37 (191)
.+.++.+++++++++++.+..+.|++++.+
T Consensus 5 ~IaIIv~V~vg~~iiii~~~~YaCcykk~~ 34 (38)
T PF02439_consen 5 TIAIIVAVVVGMAIIIICMFYYACCYKKHR 34 (38)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 344445555555555555444445544433
No 95
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=93.15 E-value=0.3 Score=32.11 Aligned_cols=24 Identities=25% Similarity=0.692 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhhccccCCCCccc
Q 029544 21 FIVFICTRIICRRIRGVESRPMFE 44 (191)
Q Consensus 21 li~~~~~~~~~~r~~~~~~r~~~~ 44 (191)
|++.++..++||+-|++.+|+.++
T Consensus 44 Fil~VilwfvCC~kRkrsRrPIYr 67 (94)
T PF05393_consen 44 FILLVILWFVCCKKRKRSRRPIYR 67 (94)
T ss_pred HHHHHHHHHHHHHHhhhccCCccc
Confidence 333444555677777777666544
No 96
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=93.11 E-value=0.06 Score=43.96 Aligned_cols=47 Identities=23% Similarity=0.602 Sum_probs=36.7
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccC
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
-+-.+|+||.+.+..+..-. +=||.-|..|-.+ ..+.||.||.++..
T Consensus 46 ~~lleCPvC~~~l~~Pi~QC---~nGHlaCssC~~~---~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPPIFQC---DNGHLACSSCRTK---VSNKCPTCRLPIGN 92 (299)
T ss_pred hhhccCchhhccCcccceec---CCCcEehhhhhhh---hcccCCcccccccc
Confidence 34568999999999886652 3479999999653 45679999999983
No 97
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.78 E-value=0.078 Score=43.54 Aligned_cols=52 Identities=19% Similarity=0.445 Sum_probs=34.9
Q ss_pred CCcCcccccccccCccEEEcCCCCCcccHhhHHHHhc-CCCccccccccccCC
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR-KKTTCPVCRLPLQDP 137 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~-~~~~CP~Cr~~~~~~ 137 (191)
+.-|+.|++.+...+.-..-=+||-..|.-|+...-+ -+..||-||+.+.+.
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~de 66 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDE 66 (480)
T ss_pred cccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence 3349999998876543322115998888888765433 234599999877644
No 98
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.74 E-value=0.007 Score=50.29 Aligned_cols=51 Identities=27% Similarity=0.625 Sum_probs=40.9
Q ss_pred CCcCcccccccccC-ccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCC
Q 029544 86 DAECSICLGEYQDK-EVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDP 137 (191)
Q Consensus 86 ~~~C~IC~~~~~~~-~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 137 (191)
...|+||.+.+... ..+..+ -|||.+|..|+.+|+.....||.|+..+...
T Consensus 196 v~sl~I~~~slK~~y~k~~~~-~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAI-VCGHIYHHGKLSKWLATKRKLPSCRRELPKN 247 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHH-hhcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence 34699999988765 333333 4999999999999999988899999988643
No 99
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=92.52 E-value=0.19 Score=30.08 Aligned_cols=34 Identities=24% Similarity=0.812 Sum_probs=29.4
Q ss_pred CCcCcccccccccCccEEEcCCCCCcccHhhHHH
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGHSFHLACIDI 119 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~ 119 (191)
...|.+|-+.|.+...+.+-|.|+-.+|..|++.
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 4569999999988777778888999999999765
No 100
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=92.35 E-value=0.057 Score=43.75 Aligned_cols=29 Identities=31% Similarity=0.827 Sum_probs=21.1
Q ss_pred EEcCCCCCcccHhhHHHHhcCCCccccccccc
Q 029544 103 RIMPQCGHSFHLACIDIWLRKKTTCPVCRLPL 134 (191)
Q Consensus 103 ~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~ 134 (191)
+.+ +|.|+||.+|... ...+.||.|-..+
T Consensus 105 RmI-PCkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 105 RMI-PCKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred ccc-ccchhhhhhhhhc--CccccCcCcccHH
Confidence 344 5999999999754 3456798887654
No 101
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=92.31 E-value=0.037 Score=52.48 Aligned_cols=47 Identities=28% Similarity=0.735 Sum_probs=38.7
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccc
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPL 134 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~ 134 (191)
....|.||++.+.+-..+. .|||.+|..|...|+..+..||.|+...
T Consensus 1152 ~~~~c~ic~dil~~~~~I~---~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIA---GCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred cccchHHHHHHHHhcCCee---eechhHhhhHHHHHHHHhccCcchhhhh
Confidence 3457999999998443333 6999999999999999999999999544
No 102
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=92.08 E-value=0.13 Score=41.38 Aligned_cols=50 Identities=24% Similarity=0.691 Sum_probs=35.6
Q ss_pred cCcccccc-cccCccEEEcCCCCCcccHhhHHHHhcC-CCccccccccccCC
Q 029544 88 ECSICLGE-YQDKEVLRIMPQCGHSFHLACIDIWLRK-KTTCPVCRLPLQDP 137 (191)
Q Consensus 88 ~C~IC~~~-~~~~~~~~~~~~C~H~f~~~Ci~~wl~~-~~~CP~Cr~~~~~~ 137 (191)
.|++|-.+ |.++.......+|+|..|.+|....+.. ...||.|...+...
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 48888764 4455433333359999999999998874 44699998777544
No 103
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.02 E-value=0.046 Score=48.40 Aligned_cols=44 Identities=25% Similarity=0.659 Sum_probs=32.3
Q ss_pred CcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCcccccccc
Q 029544 87 AECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLP 133 (191)
Q Consensus 87 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~ 133 (191)
..|.||+..|......-+.+.|||..|.+|+.... +.+|| |+++
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp-~~~D 55 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP-TKRD 55 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC-CCcc
Confidence 45999988887665554444799999999998754 45688 6543
No 104
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=91.52 E-value=0.055 Score=48.48 Aligned_cols=51 Identities=25% Similarity=0.650 Sum_probs=40.0
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCC---CccccccccccCCCC
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKK---TTCPVCRLPLQDPLG 139 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~---~~CP~Cr~~~~~~~~ 139 (191)
-..+|+||...+.++..+ .|.|.||..|+..-+... ..||+|+..+.....
T Consensus 20 k~lEc~ic~~~~~~p~~~----kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~ 73 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLL----KCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSL 73 (684)
T ss_pred hhccCCceeEEeeccchh----hhhHHHHhhhhhceeeccCccccchhhhhhhhhhhc
Confidence 356899999999999666 799999999987766533 459999977765433
No 105
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.21 E-value=0.15 Score=46.78 Aligned_cols=36 Identities=25% Similarity=0.552 Sum_probs=26.8
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHh
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWL 121 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl 121 (191)
+.+..|.+|...+...-.. +- +|||.||.+|+.+-.
T Consensus 815 ep~d~C~~C~~~ll~~pF~-vf-~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIKPFY-VF-PCGHCFHRDCLIRHV 850 (911)
T ss_pred cCccchHHhcchhhcCcce-ee-eccchHHHHHHHHHH
Confidence 5567899999887654322 33 599999999997654
No 106
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=90.15 E-value=0.27 Score=44.94 Aligned_cols=53 Identities=21% Similarity=0.491 Sum_probs=37.7
Q ss_pred CCCCcCcccccccccCccEEEcCCCCC-----cccHhhHHHHhc--CCCccccccccccCCC
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGH-----SFHLACIDIWLR--KKTTCPVCRLPLQDPL 138 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H-----~f~~~Ci~~wl~--~~~~CP~Cr~~~~~~~ 138 (191)
+++..|.||..+-..+..+-. +|.. ..|.+|+.+|+. ....|-+|+.++.-.+
T Consensus 10 ~d~~~CRICr~e~~~d~pLfh--PCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~ 69 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFH--PCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKD 69 (1175)
T ss_pred ccchhceeecCCCCCCCcCcc--cccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeee
Confidence 445789999987655554422 3553 389999999998 3445999999886543
No 107
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=89.88 E-value=0.31 Score=28.89 Aligned_cols=43 Identities=23% Similarity=0.538 Sum_probs=21.5
Q ss_pred CcccccccccCc------cEEEcCCCCCcccHhhHHHHhcCCCcccccc
Q 029544 89 CSICLGEYQDKE------VLRIMPQCGHSFHLACIDIWLRKKTTCPVCR 131 (191)
Q Consensus 89 C~IC~~~~~~~~------~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr 131 (191)
|--|+..+.... ....-+.|++.||.+|=.-.-..-..||-|.
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 444555555542 3345568999999999544334556699884
No 108
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=89.42 E-value=0.22 Score=29.37 Aligned_cols=43 Identities=21% Similarity=0.539 Sum_probs=19.1
Q ss_pred CcCcccccccccCccEEEcCCCCCcccHhhHHHHhc-----CCCcccccccc
Q 029544 87 AECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR-----KKTTCPVCRLP 133 (191)
Q Consensus 87 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~-----~~~~CP~Cr~~ 133 (191)
..|++....+..+.+-. .|.|.-|.+ ++.|+. ..-.||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~---~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGK---NCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEET---T--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCC---cCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 46888888887765543 699985433 233443 22359999863
No 109
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=89.29 E-value=0.21 Score=42.43 Aligned_cols=35 Identities=29% Similarity=0.636 Sum_probs=30.1
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhc
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR 122 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~ 122 (191)
+++..|+||..-|.++..+ +|+|..|..|....+.
T Consensus 2 eeelkc~vc~~f~~epiil----~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIIL----PCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccCceEe----ecccHHHHHHHHhhcc
Confidence 3567899999999999888 7999999999886654
No 110
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.04 E-value=0.17 Score=42.89 Aligned_cols=37 Identities=27% Similarity=0.741 Sum_probs=26.9
Q ss_pred CCCcCcccccccccC-ccEEEcCCCCCcccHhhHHHHhc
Q 029544 85 EDAECSICLGEYQDK-EVLRIMPQCGHSFHLACIDIWLR 122 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~-~~~~~~~~C~H~f~~~Ci~~wl~ 122 (191)
...+|.||..+.... .... ...|+|.||.+|+.+.+.
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~-~~~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFS-VLKCGHRFCKDCVKQHIE 182 (384)
T ss_pred ccccCccCccccccHhhhHH-HhcccchhhhHHhHHHhh
Confidence 456799999544433 3333 336999999999999887
No 111
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.69 E-value=0.43 Score=37.72 Aligned_cols=52 Identities=21% Similarity=0.312 Sum_probs=41.3
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCCC
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDPL 138 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~ 138 (191)
..+.|+|---.+........+.+|||+|-..-+.+. ....|++|...+....
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDD 161 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccC
Confidence 346799988888877766666689999999998885 4677999999887654
No 112
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.62 E-value=0.21 Score=39.51 Aligned_cols=52 Identities=23% Similarity=0.625 Sum_probs=35.8
Q ss_pred CCCCcCcccccccccCccE-EEcCCCC-----CcccHhhHHHHhcCC--------CccccccccccC
Q 029544 84 VEDAECSICLGEYQDKEVL-RIMPQCG-----HSFHLACIDIWLRKK--------TTCPVCRLPLQD 136 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~-~~~~~C~-----H~f~~~Ci~~wl~~~--------~~CP~Cr~~~~~ 136 (191)
+.+..|-||+..=++.... .+- +|. |.-|..|+..|+..+ -.||.|+.++..
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~-PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYii 83 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVH-PCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYII 83 (293)
T ss_pred ccceeEEEEeccCcccchhhhcc-cccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhee
Confidence 4456689999875554333 233 363 779999999999732 249999987753
No 113
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.60 E-value=0.29 Score=44.40 Aligned_cols=42 Identities=29% Similarity=0.692 Sum_probs=29.0
Q ss_pred CCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCcccc
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPV 129 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~ 129 (191)
...|.||--.......+ .. .|+|+.|.+|..+|+.....||.
T Consensus 1028 ~~~C~~C~l~V~gss~~-Cg-~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1028 TFQCAICHLAVRGSSNF-CG-TCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeeeeeEeeEeeccchh-hc-cccccccHHHHHHHHhcCCcCCC
Confidence 34566665444332222 22 59999999999999998888874
No 114
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.48 E-value=0.36 Score=40.51 Aligned_cols=49 Identities=16% Similarity=0.414 Sum_probs=36.2
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCC---ccccccccc
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKT---TCPVCRLPL 134 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~---~CP~Cr~~~ 134 (191)
.-+.|||=.+.-.+...-..+. |||+.+.+-+.+...+.. .||.|-...
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred ceeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 3567998777766555555554 999999999999887544 599995433
No 115
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=88.10 E-value=1 Score=31.79 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 029544 8 LITTVIGFGMSAAFIVFICTRIICRRIRGV 37 (191)
Q Consensus 8 ~v~~~i~~~~~~~li~~~~~~~~~~r~~~~ 37 (191)
++.++++++.+++++++ ++.|+++|++++
T Consensus 66 i~~Ii~gv~aGvIg~Il-li~y~irR~~Kk 94 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIIL-LISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHS--
T ss_pred eeehhHHHHHHHHHHHH-HHHHHHHHHhcc
Confidence 34444454444444333 344444444443
No 116
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.87 E-value=0.27 Score=39.66 Aligned_cols=29 Identities=21% Similarity=0.531 Sum_probs=22.6
Q ss_pred CCCcccHhhHHHHhc-------------CCCccccccccccC
Q 029544 108 CGHSFHLACIDIWLR-------------KKTTCPVCRLPLQD 136 (191)
Q Consensus 108 C~H~f~~~Ci~~wl~-------------~~~~CP~Cr~~~~~ 136 (191)
|....|.+|+.+|+. ++-+||+||+.+--
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 566788999998874 34569999998764
No 117
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=84.71 E-value=0.4 Score=32.69 Aligned_cols=14 Identities=14% Similarity=0.337 Sum_probs=6.2
Q ss_pred chhHHHHHHHHHHH
Q 029544 5 GMNLITTVIGFGMS 18 (191)
Q Consensus 5 ~~~~v~~~i~~~~~ 18 (191)
+..+++.++++++.
T Consensus 61 ~~iili~lls~v~I 74 (101)
T PF06024_consen 61 GNIILISLLSFVCI 74 (101)
T ss_pred ccchHHHHHHHHHH
Confidence 34444444444443
No 118
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=83.52 E-value=4.6 Score=22.28 Aligned_cols=32 Identities=13% Similarity=0.050 Sum_probs=23.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 029544 5 GMNLITTVIGFGMSAAFIVFICTRIICRRIRG 36 (191)
Q Consensus 5 ~~~~v~~~i~~~~~~~li~~~~~~~~~~r~~~ 36 (191)
-..++..+++.++.+++++++++..+.+..+.
T Consensus 5 ~IaIIv~V~vg~~iiii~~~~YaCcykk~~~~ 36 (38)
T PF02439_consen 5 TIAIIVAVVVGMAIIIICMFYYACCYKKHRRQ 36 (38)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 34577777777777888888888887776643
No 119
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=83.24 E-value=1.3 Score=28.87 Aligned_cols=10 Identities=30% Similarity=0.415 Sum_probs=3.9
Q ss_pred CCCCCCCCHH
Q 029544 57 GHRINGLEPV 66 (191)
Q Consensus 57 ~~~~~~~~~~ 66 (191)
+...+|-...
T Consensus 54 GnES~Gd~Ee 63 (81)
T PF00558_consen 54 GNESDGDEEE 63 (81)
T ss_dssp HCTTTTCCHH
T ss_pred CCCCCCcHHH
Confidence 3334444333
No 120
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.35 E-value=0.79 Score=39.61 Aligned_cols=36 Identities=31% Similarity=0.720 Sum_probs=29.0
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhc
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR 122 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~ 122 (191)
....+|.||.+.+.. .+..+ .|+|.||..|+..++.
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~-~c~H~~c~~cw~~yl~ 103 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGL-GCGHPFCPPCWTGYLG 103 (444)
T ss_pred CccccCCcccCCCcc--hhhhc-CCCcHHHHHHHHHHhh
Confidence 456789999999887 33334 5999999999999987
No 121
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=81.22 E-value=0.94 Score=41.45 Aligned_cols=55 Identities=13% Similarity=0.077 Sum_probs=37.0
Q ss_pred CCCcCcccccccccCc---cEEEcCCCCCcccHhhHHHHhc------CCCccccccccccCCCC
Q 029544 85 EDAECSICLGEYQDKE---VLRIMPQCGHSFHLACIDIWLR------KKTTCPVCRLPLQDPLG 139 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~---~~~~~~~C~H~f~~~Ci~~wl~------~~~~CP~Cr~~~~~~~~ 139 (191)
....|.+|...+..+. -.-.+..|+|.||..||..|.. .+-.|++|..-|.....
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR 158 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR 158 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh
Confidence 3456888888777632 1111225999999999999986 23348899887765433
No 122
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.03 E-value=0.63 Score=36.02 Aligned_cols=40 Identities=28% Similarity=0.716 Sum_probs=27.4
Q ss_pred CcccccccccCccEEEcCCCCC-cccHhhHHHHhcCCCccccccccccC
Q 029544 89 CSICLGEYQDKEVLRIMPQCGH-SFHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 89 C~IC~~~~~~~~~~~~~~~C~H-~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
|-.|.+.-. .+..+| |.| .+|..|-.. -..||+|+.....
T Consensus 161 Cr~C~~~~~---~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGEREA---TVLLLP-CRHLCLCGICDES----LRICPICRSPKTS 201 (207)
T ss_pred ceecCcCCc---eEEeec-ccceEeccccccc----CccCCCCcChhhc
Confidence 888886533 344454 998 588889643 3559999976543
No 123
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=79.77 E-value=3.9 Score=22.87 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=10.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHH
Q 029544 4 SGMNLITTVIGFGMSAAFIVFI 25 (191)
Q Consensus 4 ~~~~~v~~~i~~~~~~~li~~~ 25 (191)
-|..+|..+++++...++..++
T Consensus 8 ~GVIlVF~lVglv~i~iva~~i 29 (43)
T PF08114_consen 8 GGVILVFCLVGLVGIGIVALFI 29 (43)
T ss_pred CCeeeehHHHHHHHHHHHHHHH
Confidence 3444555555554444444444
No 124
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=79.27 E-value=1.4 Score=35.89 Aligned_cols=51 Identities=25% Similarity=0.644 Sum_probs=35.5
Q ss_pred CCcCcccccccccCcc-EEEcCCCC-----CcccHhhHHHHhc--CCCccccccccccCC
Q 029544 86 DAECSICLGEYQDKEV-LRIMPQCG-----HSFHLACIDIWLR--KKTTCPVCRLPLQDP 137 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~-~~~~~~C~-----H~f~~~Ci~~wl~--~~~~CP~Cr~~~~~~ 137 (191)
+..|-||..+...... .... +|. +..|..|+..|+. ....|..|...+...
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~-pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLIS-PCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEeccccccccccccc-CccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 4679999997654431 2222 354 3579999999998 555699999866544
No 125
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=78.73 E-value=0.95 Score=34.89 Aligned_cols=46 Identities=22% Similarity=0.554 Sum_probs=36.4
Q ss_pred CCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccc
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPL 134 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~ 134 (191)
-..|.+|-...-.+.... .|+-.+|..|+..++.....||.|..-+
T Consensus 181 lk~Cn~Ch~LvIqg~rCg---~c~i~~h~~c~qty~q~~~~cphc~d~w 226 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQGIRCG---SCNIQYHRGCIQTYLQRRDICPHCGDLW 226 (235)
T ss_pred HHHHhHhHHHhheeeccC---cccchhhhHHHHHHhcccCcCCchhccc
Confidence 456999998766654443 6888899999999999988899996444
No 126
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=78.65 E-value=1.9 Score=39.28 Aligned_cols=40 Identities=23% Similarity=0.479 Sum_probs=29.4
Q ss_pred cCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCcccc
Q 029544 88 ECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPV 129 (191)
Q Consensus 88 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~ 129 (191)
.|.+|-..+..- ....+.|+|.-|.+|+.+|+..+..||.
T Consensus 781 ~CtVC~~vi~G~--~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 781 KCTVCDLVIRGV--DVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred Cceeecceeeee--EeecccccccccHHHHHHHHhcCCCCcc
Confidence 477776654432 2223369999999999999998888876
No 127
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.25 E-value=2.4 Score=29.42 Aligned_cols=45 Identities=20% Similarity=0.420 Sum_probs=33.0
Q ss_pred CcCcccccccccCc----------cEEEcCCCCCcccHhhHHHHhcCCCcccccc
Q 029544 87 AECSICLGEYQDKE----------VLRIMPQCGHSFHLACIDIWLRKKTTCPVCR 131 (191)
Q Consensus 87 ~~C~IC~~~~~~~~----------~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr 131 (191)
..|--|...|.... ....-+.|++.||.+|-.-+-..-..||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 45999998876531 1223457999999999777766777799996
No 128
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.58 E-value=0.99 Score=36.36 Aligned_cols=35 Identities=23% Similarity=0.648 Sum_probs=29.3
Q ss_pred CCCcCcccccccccCccEEEcCCC----CCcccHhhHHHHhcC
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQC----GHSFHLACIDIWLRK 123 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C----~H~f~~~Ci~~wl~~ 123 (191)
....|.+|.+.+++...+ +| .|.||.-|-++.++.
T Consensus 267 apLcCTLC~ERLEDTHFV----QCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFV----QCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred CceeehhhhhhhccCcee----ecCCCcccceecccCHHHHHh
Confidence 346799999999998877 56 589999999998874
No 129
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=77.15 E-value=0.82 Score=40.63 Aligned_cols=43 Identities=26% Similarity=0.634 Sum_probs=26.1
Q ss_pred CCcCcccccc-----cccCccEEEcCCCCCcccHhhHHHHhcCCCccccccc
Q 029544 86 DAECSICLGE-----YQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRL 132 (191)
Q Consensus 86 ~~~C~IC~~~-----~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~ 132 (191)
.+.|.+|... |+ ...++....|+++||..|+.. ....||.|-+
T Consensus 511 gfiCe~Cq~~~iiyPF~-~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~R 558 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFE-TRNTRRCSTCLAVFHKKCLRR---KSPCCPRCER 558 (580)
T ss_pred eeeeeeccCCCcccccc-cccceeHHHHHHHHHHHHHhc---cCCCCCchHH
Confidence 4557777322 22 222233335999999999765 3344999964
No 130
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=77.07 E-value=4.5 Score=28.57 Aligned_cols=31 Identities=13% Similarity=0.298 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 029544 6 MNLITTVIGFGMSAAFIVFICTRIICRRIRG 36 (191)
Q Consensus 6 ~~~v~~~i~~~~~~~li~~~~~~~~~~r~~~ 36 (191)
..+++.+++.+++++++++|+++.+.++...
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~~Kk~~~ 97 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRLRKKSSS 97 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-----
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 3455555555555655555556655555444
No 131
>COG3462 Predicted membrane protein [Function unknown]
Probab=76.59 E-value=7.1 Score=26.88 Aligned_cols=27 Identities=22% Similarity=0.216 Sum_probs=20.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 029544 5 GMNLITTVIGFGMSAAFIVFICTRIIC 31 (191)
Q Consensus 5 ~~~~v~~~i~~~~~~~li~~~~~~~~~ 31 (191)
||+++..++++++.++++++++...-.
T Consensus 48 Gm~lImpI~~~vvli~lvvfm~~~~g~ 74 (117)
T COG3462 48 GMWLIMPIFWAVVLIFLVVFMFYILGA 74 (117)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888999888887777777555533
No 132
>PRK14859 tatA twin arginine translocase protein A; Provisional
Probab=75.31 E-value=3.7 Score=25.44 Aligned_cols=15 Identities=27% Similarity=0.572 Sum_probs=9.3
Q ss_pred CCCCchhHHHHHHHH
Q 029544 1 MWGSGMNLITTVIGF 15 (191)
Q Consensus 1 ~~g~~~~~v~~~i~~ 15 (191)
|||+|+.-+++++.+
T Consensus 1 MfgiG~~ElliIlvv 15 (63)
T PRK14859 1 MFGIGMPELIVILVI 15 (63)
T ss_pred CCCccHHHHHHHHHH
Confidence 888887655444433
No 133
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=75.07 E-value=1.5 Score=27.23 Aligned_cols=37 Identities=19% Similarity=0.390 Sum_probs=19.4
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHHh
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWL 121 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl 121 (191)
+...|.+|...|..-..-..-..||++||..|.....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 3457999999996654444444799999999976543
No 134
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=74.70 E-value=2.6 Score=32.46 Aligned_cols=41 Identities=29% Similarity=0.737 Sum_probs=28.5
Q ss_pred CCcCcccccc-----cccCccEEEcCCCCCcccHhhHHHHhcCCCccccccc
Q 029544 86 DAECSICLGE-----YQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRL 132 (191)
Q Consensus 86 ~~~C~IC~~~-----~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~ 132 (191)
.+.|-+|-.. |+. ..+...+.|+..||..|+.. ..||-|.+
T Consensus 152 GfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~~-----~~CpkC~R 197 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFRK-----KSCPKCAR 197 (202)
T ss_pred CCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcCC-----CCCCCcHh
Confidence 4568888753 222 24455667999999999752 66999964
No 135
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=74.57 E-value=4.8 Score=29.95 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 029544 13 IGFGMSAAFIVFICTRIICRRIR 35 (191)
Q Consensus 13 i~~~~~~~li~~~~~~~~~~r~~ 35 (191)
+.+++.++++++|+++.+..|.+
T Consensus 100 Vl~g~s~l~i~yfvir~~R~r~~ 122 (163)
T PF06679_consen 100 VLVGLSALAILYFVIRTFRLRRR 122 (163)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc
Confidence 33334444555555666554443
No 136
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=74.55 E-value=1.2 Score=25.88 Aligned_cols=42 Identities=24% Similarity=0.632 Sum_probs=27.0
Q ss_pred CcccccccccCccEEEcCCCCCcccHhhHHHHhc------CCCcccccc
Q 029544 89 CSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR------KKTTCPVCR 131 (191)
Q Consensus 89 C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~------~~~~CP~Cr 131 (191)
|.||.........+ .-..|+..||..|+..-.. ..-.||.|+
T Consensus 2 C~vC~~~~~~~~~i-~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 2 CPVCGQSDDDGDMI-QCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp BTTTTSSCTTSSEE-EBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred CcCCCCcCCCCCeE-EcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 77888844444444 3335899999999764432 234588775
No 137
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.48 E-value=2.8 Score=33.19 Aligned_cols=35 Identities=20% Similarity=0.193 Sum_probs=30.3
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhc
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR 122 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~ 122 (191)
.+...|..|+..+.++... +=||+|+.+||.+++.
T Consensus 41 K~FdcCsLtLqPc~dPvit----~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 41 KPFDCCSLTLQPCRDPVIT----PDGYLFDREAILEYIL 75 (303)
T ss_pred CCcceeeeecccccCCccC----CCCeeeeHHHHHHHHH
Confidence 4556789999999999888 7999999999998875
No 138
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=74.24 E-value=1.3 Score=34.24 Aligned_cols=28 Identities=14% Similarity=0.352 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029544 6 MNLITTVIGFGMSAAFIVFICTRIICRR 33 (191)
Q Consensus 6 ~~~v~~~i~~~~~~~li~~~~~~~~~~r 33 (191)
..+++++++.++.|+|++++.+.+.+||
T Consensus 37 ~~I~iaiVAG~~tVILVI~i~v~vR~CR 64 (221)
T PF08374_consen 37 VKIMIAIVAGIMTVILVIFIVVLVRYCR 64 (221)
T ss_pred eeeeeeeecchhhhHHHHHHHHHHHHHh
Confidence 3456667777777777777666555444
No 139
>PRK04598 tatA twin arginine translocase protein A; Provisional
Probab=73.43 E-value=4.4 Score=26.44 Aligned_cols=14 Identities=14% Similarity=0.067 Sum_probs=8.9
Q ss_pred CCCCchhHHHHHHH
Q 029544 1 MWGSGMNLITTVIG 14 (191)
Q Consensus 1 ~~g~~~~~v~~~i~ 14 (191)
|+|+|++-++++++
T Consensus 1 m~glg~~elliIlv 14 (81)
T PRK04598 1 MGGISIWQLLIIAV 14 (81)
T ss_pred CCCccHHHHHHHHH
Confidence 78888775554443
No 140
>PRK01614 tatE twin arginine translocase protein A; Validated
Probab=72.93 E-value=4.5 Score=26.44 Aligned_cols=14 Identities=21% Similarity=0.043 Sum_probs=9.1
Q ss_pred CCCCchhHHHHHHH
Q 029544 1 MWGSGMNLITTVIG 14 (191)
Q Consensus 1 ~~g~~~~~v~~~i~ 14 (191)
|+|+|.+-+++|+.
T Consensus 1 M~GlG~~ELLIIlv 14 (85)
T PRK01614 1 MEGLSITKLLVVGI 14 (85)
T ss_pred CCCccHHHHHHHHH
Confidence 88888776554443
No 141
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.91 E-value=2.2 Score=37.95 Aligned_cols=47 Identities=30% Similarity=0.767 Sum_probs=36.4
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCCC
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDPL 138 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~ 138 (191)
+....|.+|++.. ..+.. .|. |..|+..|+..+..||+|+..+....
T Consensus 477 ~~~~~~~~~~~~~----~~~~~-~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~ 523 (543)
T KOG0802|consen 477 EPNDVCAICYQEM----SARIT-PCS---HALCLRKWLYVQEVCPLCHTYMKEDD 523 (543)
T ss_pred cccCcchHHHHHH----Hhccc-ccc---chhHHHhhhhhccccCCCchhhhccc
Confidence 4456799999988 22333 477 88999999999999999998876543
No 142
>PRK01844 hypothetical protein; Provisional
Probab=72.30 E-value=8.5 Score=24.46 Aligned_cols=28 Identities=14% Similarity=0.292 Sum_probs=16.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029544 5 GMNLITTVIGFGMSAAFIVFICTRIICR 32 (191)
Q Consensus 5 ~~~~v~~~i~~~~~~~li~~~~~~~~~~ 32 (191)
++++++.+++++++++.-+|+..+++-.
T Consensus 4 ~~~I~l~I~~li~G~~~Gff~ark~~~k 31 (72)
T PRK01844 4 WLGILVGVVALVAGVALGFFIARKYMMN 31 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666664444443
No 143
>PRK03554 tatA twin arginine translocase protein A; Provisional
Probab=72.01 E-value=4.9 Score=26.60 Aligned_cols=15 Identities=13% Similarity=0.085 Sum_probs=9.0
Q ss_pred CCCCchhHHHHHHHH
Q 029544 1 MWGSGMNLITTVIGF 15 (191)
Q Consensus 1 ~~g~~~~~v~~~i~~ 15 (191)
|+|+|++-+++|+++
T Consensus 1 M~glG~~eLlIIlvI 15 (89)
T PRK03554 1 MGGISIWQLLIIAVI 15 (89)
T ss_pred CCCccHHHHHHHHHH
Confidence 778877655444433
No 144
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=71.92 E-value=6.1 Score=32.59 Aligned_cols=50 Identities=24% Similarity=0.545 Sum_probs=36.1
Q ss_pred CcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccC
Q 029544 87 AECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 87 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
..|+||.+..........--+|++..|..|+..-...+..||.||.+...
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCcccc
Confidence 57999999774333221111588888888988888888899999965543
No 145
>PRK14860 tatA twin arginine translocase protein A; Provisional
Probab=71.63 E-value=4.3 Score=25.23 Aligned_cols=14 Identities=29% Similarity=0.565 Sum_probs=8.6
Q ss_pred CCCCchhHHHHHHH
Q 029544 1 MWGSGMNLITTVIG 14 (191)
Q Consensus 1 ~~g~~~~~v~~~i~ 14 (191)
|||+|.+-+++++.
T Consensus 1 MfgiG~~ElliI~v 14 (64)
T PRK14860 1 MFGFGMPELIVILV 14 (64)
T ss_pred CCCccHHHHHHHHH
Confidence 88988665444433
No 146
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=71.57 E-value=23 Score=22.48 Aligned_cols=25 Identities=4% Similarity=0.278 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 029544 7 NLITTVIGFGMSAAFIVFICTRIIC 31 (191)
Q Consensus 7 ~~v~~~i~~~~~~~li~~~~~~~~~ 31 (191)
.+.++-+++++.+++++++++.++.
T Consensus 6 ~i~i~Gm~iVF~~L~lL~~~i~l~~ 30 (79)
T PF04277_consen 6 QIMIIGMGIVFLVLILLILVISLMS 30 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444433
No 147
>PF15050 SCIMP: SCIMP protein
Probab=71.43 E-value=9.4 Score=26.77 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=12.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHHH
Q 029544 2 WGSGMNLITTVIGFGMSAAFIVF 24 (191)
Q Consensus 2 ~g~~~~~v~~~i~~~~~~~li~~ 24 (191)
|--.+++++++..+++++++-++
T Consensus 4 Wr~nFWiiLAVaII~vS~~lglI 26 (133)
T PF15050_consen 4 WRDNFWIILAVAIILVSVVLGLI 26 (133)
T ss_pred HHhchHHHHHHHHHHHHHHHHHH
Confidence 34456666666655555444333
No 148
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=71.25 E-value=5.6 Score=32.70 Aligned_cols=52 Identities=21% Similarity=0.507 Sum_probs=33.4
Q ss_pred CCCCcCcccccccc---------------cCccEE-EcCCCCCcccHhhHHHHhc---------CCCccccccccccC
Q 029544 84 VEDAECSICLGEYQ---------------DKEVLR-IMPQCGHSFHLACIDIWLR---------KKTTCPVCRLPLQD 136 (191)
Q Consensus 84 ~~~~~C~IC~~~~~---------------~~~~~~-~~~~C~H~f~~~Ci~~wl~---------~~~~CP~Cr~~~~~ 136 (191)
....+|++|+..-. .+.... .. +|||+.-.+-..-|.. -+..||.|-..+..
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~-PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFN-PCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccC-CcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 34678999996522 011111 23 5999988888888865 23459999877653
No 149
>PRK00523 hypothetical protein; Provisional
Probab=70.65 E-value=10 Score=24.09 Aligned_cols=28 Identities=11% Similarity=0.160 Sum_probs=16.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029544 5 GMNLITTVIGFGMSAAFIVFICTRIICR 32 (191)
Q Consensus 5 ~~~~v~~~i~~~~~~~li~~~~~~~~~~ 32 (191)
++++.+++++++++++.-+|+..+++-.
T Consensus 5 ~l~I~l~i~~li~G~~~Gffiark~~~k 32 (72)
T PRK00523 5 GLALGLGIPLLIVGGIIGYFVSKKMFKK 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666654444443
No 150
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=70.31 E-value=3.7 Score=33.82 Aligned_cols=46 Identities=26% Similarity=0.497 Sum_probs=32.3
Q ss_pred CCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccc
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRL 132 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~ 132 (191)
...|-.|.+........+.- .|.+.||.+|-.-.-..-..||-|..
T Consensus 330 ~~~Cf~C~~~~~~~~~y~C~-~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 330 SRFCFACQGELLSSGRYRCE-SCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred CcceeeeccccCCCCcEEch-hccceeeccchHHHHhhhhcCCCcCC
Confidence 44599997766665555443 59999999996554445566999973
No 151
>PHA02975 hypothetical protein; Provisional
Probab=69.78 E-value=10 Score=23.72 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029544 13 IGFGMSAAFIVFICTRI 29 (191)
Q Consensus 13 i~~~~~~~li~~~~~~~ 29 (191)
+.+++.++++.+++.+.
T Consensus 51 i~~v~~~~~~~flYLK~ 67 (69)
T PHA02975 51 IIFITCIAVFTFLYLKL 67 (69)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33333333444443433
No 152
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.89 E-value=5.5 Score=32.50 Aligned_cols=51 Identities=24% Similarity=0.524 Sum_probs=41.8
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCC
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDP 137 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 137 (191)
.....|-+|...+..+.... .|.|.|+..|...|....+.||.|+......
T Consensus 103 ~~~~~~~~~~g~l~vpt~~q---g~w~qf~~~~p~~~~~~~~~~~d~~~~~~pv 153 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPTRIQ---GCWHQFCYVCPKSNFAMGNDCPDCRGKISPV 153 (324)
T ss_pred CCccceeeeeeeEEeccccc---CceeeeeecCCchhhhhhhccchhhcCcCce
Confidence 34567999999888877664 5999999999999999888899999766544
No 153
>PRK00720 tatA twin arginine translocase protein A; Provisional
Probab=68.89 E-value=6.5 Score=25.46 Aligned_cols=14 Identities=14% Similarity=-0.038 Sum_probs=8.9
Q ss_pred CCCCchhHHHHHHH
Q 029544 1 MWGSGMNLITTVIG 14 (191)
Q Consensus 1 ~~g~~~~~v~~~i~ 14 (191)
|+|+|.+-+++++.
T Consensus 1 Mgg~g~~ellIIlv 14 (78)
T PRK00720 1 MGSFSIWHWLIVLA 14 (78)
T ss_pred CCCCcHHHHHHHHH
Confidence 77888776554444
No 154
>PRK14858 tatA twin arginine translocase protein A; Provisional
Probab=67.75 E-value=5.3 Score=27.56 Aligned_cols=14 Identities=29% Similarity=0.589 Sum_probs=9.0
Q ss_pred CCCCchhHHHHHHH
Q 029544 1 MWGSGMNLITTVIG 14 (191)
Q Consensus 1 ~~g~~~~~v~~~i~ 14 (191)
|||+|+.-+++|+.
T Consensus 1 MF~iG~~ElliIlv 14 (108)
T PRK14858 1 MFGIGMPELIVILV 14 (108)
T ss_pred CCCccHHHHHHHHH
Confidence 89988765444433
No 155
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=67.74 E-value=7.8 Score=26.56 Aligned_cols=51 Identities=20% Similarity=0.378 Sum_probs=29.6
Q ss_pred CCCcCcccccccccCccEE----EcCCC---CCcccHhhHHHHhc---------CCCcccccccccc
Q 029544 85 EDAECSICLGEYQDKEVLR----IMPQC---GHSFHLACIDIWLR---------KKTTCPVCRLPLQ 135 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~----~~~~C---~H~f~~~Ci~~wl~---------~~~~CP~Cr~~~~ 135 (191)
....|-.|...-.+....- ..+.| .-.||..||..++. ..-.||.||..-+
T Consensus 6 ~g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCn 72 (105)
T PF10497_consen 6 NGKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICN 72 (105)
T ss_pred CCCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeC
Confidence 3445777776433222110 11246 66799999887764 2335999987443
No 156
>PRK01833 tatA twin arginine translocase protein A; Provisional
Probab=67.68 E-value=7.2 Score=25.00 Aligned_cols=15 Identities=13% Similarity=0.255 Sum_probs=9.7
Q ss_pred CCCCchhHHHHHHHH
Q 029544 1 MWGSGMNLITTVIGF 15 (191)
Q Consensus 1 ~~g~~~~~v~~~i~~ 15 (191)
|+|+|.+-+++++++
T Consensus 1 m~g~g~~elliIl~i 15 (74)
T PRK01833 1 MGGISIWQLLIIVAI 15 (74)
T ss_pred CCCccHHHHHHHHHH
Confidence 778887766555443
No 157
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=66.16 E-value=8.7 Score=26.48 Aligned_cols=23 Identities=4% Similarity=0.257 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHhhccccC
Q 029544 16 GMSAAFIVFICTRIICRRIRGVE 38 (191)
Q Consensus 16 ~~~~~li~~~~~~~~~~r~~~~~ 38 (191)
+++++|++.+.+.++.+|..+++
T Consensus 6 il~llLll~l~asl~~wr~~~rq 28 (107)
T PF15330_consen 6 ILALLLLLSLAASLLAWRMKQRQ 28 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 33344555555666666555443
No 158
>PRK03625 tatE twin arginine translocase protein E; Validated
Probab=65.50 E-value=7.5 Score=24.39 Aligned_cols=15 Identities=13% Similarity=0.126 Sum_probs=9.1
Q ss_pred CCCCchhHHHHHHHH
Q 029544 1 MWGSGMNLITTVIGF 15 (191)
Q Consensus 1 ~~g~~~~~v~~~i~~ 15 (191)
|+|+|.+-+++++++
T Consensus 1 M~~ig~~elliIlvI 15 (67)
T PRK03625 1 MGEISITKLLVVAAL 15 (67)
T ss_pred CCCCcHHHHHHHHHH
Confidence 788777655544433
No 159
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=64.88 E-value=5.3 Score=21.78 Aligned_cols=12 Identities=17% Similarity=0.592 Sum_probs=7.3
Q ss_pred cCcccccccccC
Q 029544 88 ECSICLGEYQDK 99 (191)
Q Consensus 88 ~C~IC~~~~~~~ 99 (191)
.|+-|...|..+
T Consensus 4 ~CP~C~~~f~v~ 15 (37)
T PF13719_consen 4 TCPNCQTRFRVP 15 (37)
T ss_pred ECCCCCceEEcC
Confidence 467676666544
No 160
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=64.84 E-value=1.1 Score=36.37 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=22.7
Q ss_pred CCCCcCcccccccccCccEEEcC-CCCCcccHhhHHHHhcCCCcccccccc
Q 029544 84 VEDAECSICLGEYQDKEVLRIMP-QCGHSFHLACIDIWLRKKTTCPVCRLP 133 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~-~C~H~f~~~Ci~~wl~~~~~CP~Cr~~ 133 (191)
+....|++|-..-.-......-. .-.|.+|..|-.+|-.....||.|-..
T Consensus 170 w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred ccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 34568999998755443332110 024668888999998888889999753
No 161
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=64.51 E-value=6.3 Score=29.99 Aligned_cols=38 Identities=21% Similarity=0.319 Sum_probs=17.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 029544 2 WGSGMNLITTVIGFGMSAAFIVFICTRIICRRIRGVESR 40 (191)
Q Consensus 2 ~g~~~~~v~~~i~~~~~~~li~~~~~~~~~~r~~~~~~r 40 (191)
|=+|.++|+++...++ +++++|++++.-..|+..+.+|
T Consensus 7 ~lsGv~vvlv~a~g~l-~~vllfIfaKRQI~Rf~lrsrr 44 (186)
T PF07406_consen 7 WLSGVNVVLVIAYGSL-VFVLLFIFAKRQIMRFALRSRR 44 (186)
T ss_pred cccceeeehhhHHHHH-HHHHHHHHHHHHHHHHHHhccC
Confidence 3355555554444333 3444444454444454444333
No 162
>PRK14857 tatA twin arginine translocase protein A; Provisional
Probab=64.41 E-value=7.2 Score=25.99 Aligned_cols=15 Identities=13% Similarity=0.519 Sum_probs=9.2
Q ss_pred CCCCchhHHHHHHHH
Q 029544 1 MWGSGMNLITTVIGF 15 (191)
Q Consensus 1 ~~g~~~~~v~~~i~~ 15 (191)
|||+|..-+++++.+
T Consensus 3 mF~iG~~ElliIlvV 17 (90)
T PRK14857 3 IFGIGLPEMAVILVI 17 (90)
T ss_pred cccccHHHHHHHHHH
Confidence 788887654444433
No 163
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=64.11 E-value=2.7 Score=31.53 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 029544 8 LITTVIGFGMSAAFIVFICTRIICR 32 (191)
Q Consensus 8 ~v~~~i~~~~~~~li~~~~~~~~~~ 32 (191)
+++.||++++++++++.++....++
T Consensus 80 iivgvi~~Vi~Iv~~Iv~~~Cc~c~ 104 (179)
T PF13908_consen 80 IIVGVICGVIAIVVLIVCFCCCCCC 104 (179)
T ss_pred eeeehhhHHHHHHHhHhhheecccc
Confidence 3333333333334444444533333
No 164
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=64.09 E-value=2.2 Score=35.99 Aligned_cols=51 Identities=22% Similarity=0.522 Sum_probs=0.0
Q ss_pred CCCcCccccccccc---------------C-ccEEEcCCCCCcccHhhHHHHhc---------CCCccccccccccC
Q 029544 85 EDAECSICLGEYQD---------------K-EVLRIMPQCGHSFHLACIDIWLR---------KKTTCPVCRLPLQD 136 (191)
Q Consensus 85 ~~~~C~IC~~~~~~---------------~-~~~~~~~~C~H~f~~~Ci~~wl~---------~~~~CP~Cr~~~~~ 136 (191)
...+|++|+..-.- . -..... +|||+--.+...-|-. -+..||.|-.++..
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~-PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFN-PCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeec-ccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 36789999965210 0 011134 5999988888888865 12459999887753
No 165
>PRK04098 sec-independent translocase; Provisional
Probab=63.42 E-value=6.5 Score=29.04 Aligned_cols=13 Identities=31% Similarity=0.616 Sum_probs=8.5
Q ss_pred CCCCchhHHHHHH
Q 029544 1 MWGSGMNLITTVI 13 (191)
Q Consensus 1 ~~g~~~~~v~~~i 13 (191)
|||+|++=+++|+
T Consensus 1 MfgiG~~EllvI~ 13 (158)
T PRK04098 1 MFGMGFFEILVIL 13 (158)
T ss_pred CCCCcHHHHHHHH
Confidence 8998876544433
No 166
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.18 E-value=3.3 Score=35.13 Aligned_cols=44 Identities=25% Similarity=0.479 Sum_probs=29.2
Q ss_pred CCcCcccccccccCc--cEEEcCCCCCcccHhhHHHHhcCCCccccc
Q 029544 86 DAECSICLGEYQDKE--VLRIMPQCGHSFHLACIDIWLRKKTTCPVC 130 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~--~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~C 130 (191)
-..|+.|.-.+.... ...... |+|.||+.|...|...+..|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 446887776554322 222343 99999999999998776666444
No 167
>PHA02849 putative transmembrane protein; Provisional
Probab=63.05 E-value=20 Score=23.06 Aligned_cols=16 Identities=13% Similarity=0.225 Sum_probs=8.2
Q ss_pred CCCchhHHHHHHHHHH
Q 029544 2 WGSGMNLITTVIGFGM 17 (191)
Q Consensus 2 ~g~~~~~v~~~i~~~~ 17 (191)
|+.|+.+++.++.+++
T Consensus 12 f~~g~v~vi~v~v~vI 27 (82)
T PHA02849 12 FDAGAVTVILVFVLVI 27 (82)
T ss_pred cccchHHHHHHHHHHH
Confidence 4566655555544433
No 168
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=63.02 E-value=6.1 Score=23.33 Aligned_cols=35 Identities=17% Similarity=0.342 Sum_probs=23.6
Q ss_pred CcCcccccccccCccEEEcCCCCCcccHhhHHHHh
Q 029544 87 AECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWL 121 (191)
Q Consensus 87 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl 121 (191)
..|.+|-..|.....-.....||++||..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 35888887776544333333799999999976543
No 169
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=62.76 E-value=3.4 Score=24.46 Aligned_cols=13 Identities=15% Similarity=0.577 Sum_probs=9.2
Q ss_pred CCcCccccccccc
Q 029544 86 DAECSICLGEYQD 98 (191)
Q Consensus 86 ~~~C~IC~~~~~~ 98 (191)
.+.|+.|...+..
T Consensus 2 ~f~CP~C~~~~~~ 14 (54)
T PF05605_consen 2 SFTCPYCGKGFSE 14 (54)
T ss_pred CcCCCCCCCccCH
Confidence 4679999885443
No 170
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=62.54 E-value=7.1 Score=20.58 Aligned_cols=36 Identities=28% Similarity=0.624 Sum_probs=22.2
Q ss_pred CcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccc
Q 029544 89 CSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPL 134 (191)
Q Consensus 89 C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~ 134 (191)
|..|...+........ .=+..||..| ..|..|+.++
T Consensus 2 C~~C~~~i~~~~~~~~--~~~~~~H~~C--------f~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELVLR--ALGKVWHPEC--------FKCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEEEE--eCCccccccC--------CCCcccCCcC
Confidence 6777777666522211 2456788777 4577777665
No 171
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=61.77 E-value=11 Score=24.13 Aligned_cols=14 Identities=14% Similarity=-0.128 Sum_probs=8.3
Q ss_pred CCCCchhHHHHHHH
Q 029544 1 MWGSGMNLITTVIG 14 (191)
Q Consensus 1 ~~g~~~~~v~~~i~ 14 (191)
|.|+|.+-+++++.
T Consensus 1 mg~~g~~elliIl~ 14 (73)
T PRK02958 1 MGSFSIWHWLIVLV 14 (73)
T ss_pred CCCccHHHHHHHHH
Confidence 66777665555443
No 173
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=61.33 E-value=2.8 Score=26.00 Aligned_cols=8 Identities=25% Similarity=0.372 Sum_probs=0.4
Q ss_pred HhhccccC
Q 029544 31 CRRIRGVE 38 (191)
Q Consensus 31 ~~r~~~~~ 38 (191)
..|+|++.
T Consensus 33 iyR~rkkd 40 (64)
T PF01034_consen 33 IYRMRKKD 40 (64)
T ss_dssp ----S---
T ss_pred HHHHHhcC
Confidence 33444433
No 175
>PRK01770 sec-independent translocase; Provisional
Probab=61.19 E-value=7.5 Score=29.13 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=9.0
Q ss_pred CCCCchhHHHHHHH
Q 029544 1 MWGSGMNLITTVIG 14 (191)
Q Consensus 1 ~~g~~~~~v~~~i~ 14 (191)
|||+|++=+++|++
T Consensus 1 MF~IG~~ELllI~v 14 (171)
T PRK01770 1 MFDIGFSELLLVFV 14 (171)
T ss_pred CCCccHHHHHHHHH
Confidence 89999764444433
No 176
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=61.06 E-value=14 Score=34.19 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Q 029544 10 TTVIGFGMSAAFIVFICTRIICRRIRG 36 (191)
Q Consensus 10 ~~~i~~~~~~~li~~~~~~~~~~r~~~ 36 (191)
++|++.++.++++++.++.++|+|.+.
T Consensus 276 l~ILG~~~livl~lL~vLl~yCrrkc~ 302 (807)
T PF10577_consen 276 LAILGGTALIVLILLCVLLCYCRRKCL 302 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 444554444445444444444544333
No 177
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=60.80 E-value=4.6 Score=25.15 Aligned_cols=12 Identities=33% Similarity=0.977 Sum_probs=8.8
Q ss_pred cccHhhHHHHhc
Q 029544 111 SFHLACIDIWLR 122 (191)
Q Consensus 111 ~f~~~Ci~~wl~ 122 (191)
.||..|+..|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999986
No 178
>PRK11677 hypothetical protein; Provisional
Probab=60.75 E-value=12 Score=26.89 Aligned_cols=20 Identities=15% Similarity=0.127 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 029544 6 MNLITTVIGFGMSAAFIVFI 25 (191)
Q Consensus 6 ~~~v~~~i~~~~~~~li~~~ 25 (191)
|.|+++++++++++++-+++
T Consensus 1 M~W~~a~i~livG~iiG~~~ 20 (134)
T PRK11677 1 MTWEYALIGLVVGIIIGAVA 20 (134)
T ss_pred CcHHHHHHHHHHHHHHHHHH
Confidence 45777777777776555555
No 179
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=60.41 E-value=5.6 Score=31.66 Aligned_cols=45 Identities=20% Similarity=0.335 Sum_probs=34.4
Q ss_pred CCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCC--cccccccc
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKT--TCPVCRLP 133 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~--~CP~Cr~~ 133 (191)
...|+|=...+.++..-. .|||+|-.+-+.+.+.... .||+--.+
T Consensus 176 s~rdPis~~~I~nPviSk---kC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISK---KCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred cccCchhhhhhhchhhhc---CcCcchhhhhHHHHhccCceeecccccCC
Confidence 456998877778777665 7999999999999987633 48775444
No 180
>PRK00708 sec-independent translocase; Provisional
Probab=59.55 E-value=7.9 Score=29.97 Aligned_cols=14 Identities=14% Similarity=0.221 Sum_probs=9.0
Q ss_pred CCCCchhHHHHHHH
Q 029544 1 MWGSGMNLITTVIG 14 (191)
Q Consensus 1 ~~g~~~~~v~~~i~ 14 (191)
|||+|++=+++|++
T Consensus 1 MFdIG~~ELlvI~v 14 (209)
T PRK00708 1 MFDIGWSELLVIAI 14 (209)
T ss_pred CCCccHHHHHHHHH
Confidence 99988765444433
No 181
>PRK00404 tatB sec-independent translocase; Provisional
Probab=59.40 E-value=8.9 Score=27.77 Aligned_cols=11 Identities=18% Similarity=0.395 Sum_probs=7.3
Q ss_pred CCCCchhHHHH
Q 029544 1 MWGSGMNLITT 11 (191)
Q Consensus 1 ~~g~~~~~v~~ 11 (191)
|||+|+.=+++
T Consensus 1 MF~IG~~ELlv 11 (141)
T PRK00404 1 MFGISFSELLL 11 (141)
T ss_pred CCCccHHHHHH
Confidence 89988754333
No 182
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=59.06 E-value=2.5 Score=21.26 Aligned_cols=7 Identities=43% Similarity=0.971 Sum_probs=3.0
Q ss_pred Ccccccc
Q 029544 89 CSICLGE 95 (191)
Q Consensus 89 C~IC~~~ 95 (191)
|+-|...
T Consensus 3 CP~C~~~ 9 (26)
T PF10571_consen 3 CPECGAE 9 (26)
T ss_pred CCCCcCC
Confidence 4444443
No 183
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=59.01 E-value=4.2 Score=24.07 Aligned_cols=12 Identities=42% Similarity=1.204 Sum_probs=6.3
Q ss_pred ccccccccccCC
Q 029544 126 TCPVCRLPLQDP 137 (191)
Q Consensus 126 ~CP~Cr~~~~~~ 137 (191)
.||+|.++|...
T Consensus 22 ~CPlC~r~l~~e 33 (54)
T PF04423_consen 22 CCPLCGRPLDEE 33 (54)
T ss_dssp E-TTT--EE-HH
T ss_pred cCCCCCCCCCHH
Confidence 799999988643
No 184
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=58.48 E-value=25 Score=21.18 Aligned_cols=45 Identities=22% Similarity=0.522 Sum_probs=30.8
Q ss_pred cCcccccccccCc-cEEEcCCCCC--cccHhhHHHHhcCCCccccccccccCC
Q 029544 88 ECSICLGEYQDKE-VLRIMPQCGH--SFHLACIDIWLRKKTTCPVCRLPLQDP 137 (191)
Q Consensus 88 ~C~IC~~~~~~~~-~~~~~~~C~H--~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 137 (191)
.|--|-.++.... ... -|.+ .||.+|.+..| +..||.|...+...
T Consensus 7 nCE~C~~dLp~~s~~A~---ICSfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAY---ICSFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred CccccCCCCCCCCCcce---EEeEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 4666776666544 222 2554 69999999876 57799998877643
No 185
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=57.92 E-value=14 Score=23.69 Aligned_cols=13 Identities=15% Similarity=-0.038 Sum_probs=7.5
Q ss_pred CCCCchhHHHHHH
Q 029544 1 MWGSGMNLITTVI 13 (191)
Q Consensus 1 ~~g~~~~~v~~~i 13 (191)
|.|++.+-+++++
T Consensus 1 Mgg~s~~ellIIl 13 (75)
T PRK04561 1 MGSFSIWHWLVVL 13 (75)
T ss_pred CCCCcHHHHHHHH
Confidence 6777766544443
No 186
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=57.41 E-value=18 Score=25.59 Aligned_cols=34 Identities=15% Similarity=0.144 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 029544 6 MNLITTVIGFGMSAAFIVFICTRIICRRIRGVES 39 (191)
Q Consensus 6 ~~~v~~~i~~~~~~~li~~~~~~~~~~r~~~~~~ 39 (191)
+.++++++.+++..++++.+++.++..+.+....
T Consensus 42 ~~~lYIL~vmgfFgff~~gImlsyvRSKK~E~s~ 75 (129)
T PF02060_consen 42 NEYLYILVVMGFFGFFTVGIMLSYVRSKKREHSH 75 (129)
T ss_dssp STT-HHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred ceeehHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 3456666666666777777778887766655443
No 187
>PRK04654 sec-independent translocase; Provisional
Probab=56.58 E-value=10 Score=29.33 Aligned_cols=12 Identities=25% Similarity=0.531 Sum_probs=7.9
Q ss_pred CCCCchhHHHHH
Q 029544 1 MWGSGMNLITTV 12 (191)
Q Consensus 1 ~~g~~~~~v~~~ 12 (191)
|||+|+.=+++|
T Consensus 1 MFgIG~~ELLlI 12 (214)
T PRK04654 1 MFDIGVGELTLI 12 (214)
T ss_pred CCCccHHHHHHH
Confidence 999987544333
No 188
>COG3630 OadG Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit [Energy production and conversion]
Probab=55.04 E-value=15 Score=24.10 Aligned_cols=30 Identities=20% Similarity=0.217 Sum_probs=16.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029544 3 GSGMNLITTVIGFGMSAAFIVFICTRIICR 32 (191)
Q Consensus 3 g~~~~~v~~~i~~~~~~~li~~~~~~~~~~ 32 (191)
+.|+.+.+.-+++++..++++.+..+.+..
T Consensus 8 ~eg~~L~vlGmg~VflfL~iLi~~~~~m~~ 37 (84)
T COG3630 8 LEGITLMVLGMGFVFLFLSILIYAMRGMGA 37 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566666555555555555543
No 189
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=54.63 E-value=2.5 Score=20.54 Aligned_cols=8 Identities=38% Similarity=0.999 Sum_probs=3.9
Q ss_pred Cccccccc
Q 029544 125 TTCPVCRL 132 (191)
Q Consensus 125 ~~CP~Cr~ 132 (191)
+.||.|-.
T Consensus 14 ~fC~~CG~ 21 (23)
T PF13240_consen 14 KFCPNCGT 21 (23)
T ss_pred cchhhhCC
Confidence 33555544
No 190
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=54.54 E-value=20 Score=23.18 Aligned_cols=55 Identities=20% Similarity=0.453 Sum_probs=20.7
Q ss_pred CCCcCccccccccc---CccEEEcCCCCCcccHhhHHHHhc-CCCccccccccccCCCC
Q 029544 85 EDAECSICLGEYQD---KEVLRIMPQCGHSFHLACIDIWLR-KKTTCPVCRLPLQDPLG 139 (191)
Q Consensus 85 ~~~~C~IC~~~~~~---~~~~~~~~~C~H~f~~~Ci~~wl~-~~~~CP~Cr~~~~~~~~ 139 (191)
+...|-||-++... +........|+--.|..|.+-=.+ .+..||.|+..+...++
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kg 66 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKG 66 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccC
Confidence 34569999988643 232222224666688899865444 56679999988765444
No 191
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=54.19 E-value=18 Score=26.29 Aligned_cols=10 Identities=20% Similarity=0.321 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 029544 8 LITTVIGFGM 17 (191)
Q Consensus 8 ~v~~~i~~~~ 17 (191)
+++++++|++
T Consensus 31 m~tILiaIvV 40 (189)
T PF05568_consen 31 MYTILIAIVV 40 (189)
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 192
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.86 E-value=4.5 Score=37.18 Aligned_cols=43 Identities=21% Similarity=0.641 Sum_probs=28.5
Q ss_pred CCcCcccccccccC----ccEEEcCCCCCcccHhhHHHHhcCCCccccc
Q 029544 86 DAECSICLGEYQDK----EVLRIMPQCGHSFHLACIDIWLRKKTTCPVC 130 (191)
Q Consensus 86 ~~~C~IC~~~~~~~----~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~C 130 (191)
+..|..|.+..... ..+.+. .|+|.||..|+.....++. |-.|
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~-~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVF-HCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred hhhhhhhcccccccCcccceeeEE-EccchhhhcccccHHHhcc-cChh
Confidence 34799999875532 233344 5999999999876655444 5444
No 193
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=53.84 E-value=35 Score=23.83 Aligned_cols=30 Identities=13% Similarity=0.053 Sum_probs=19.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029544 3 GSGMNLITTVIGFGMSAAFIVFICTRIICR 32 (191)
Q Consensus 3 g~~~~~v~~~i~~~~~~~li~~~~~~~~~~ 32 (191)
|.+.+|.++|++|++.-.+-+.+++..++.
T Consensus 7 ~~~a~Ia~mVlGFi~fWPlGla~Lay~iw~ 36 (115)
T PF11014_consen 7 WKPAWIAAMVLGFIVFWPLGLALLAYMIWG 36 (115)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888887665555554444443
No 194
>PF00737 PsbH: Photosystem II 10 kDa phosphoprotein; InterPro: IPR001056 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight phosphoprotein PsbH found in PSII. The phosphorylation site of PsbH is located in the N terminus, where reversible phosphorylation is light-dependent and redox-controlled. PsbH is necessary for the photoprotection of PSII, being required for: (1) the rapid degradation of photodamaged D1 core protein to prevent further oxidative damage to the PSII core, and (2) the insertion of newly synthesised D1 protein into the thylakoid membrane []. PsbH may also regulate the transfer of electrons from D2 (Qa) to D1 (Qb) in the reaction core.; GO: 0042301 phosphate ion binding, 0015979 photosynthesis, 0050821 protein stabilization, 0009523 photosystem II, 0016020 membrane; PDB: 3PRR_H 2AXT_h 3BZ2_H 3BZ1_H 4FBY_W 3PRQ_H 3KZI_H 1S5L_h 3A0H_H 3ARC_H ....
Probab=53.23 E-value=33 Score=20.26 Aligned_cols=15 Identities=20% Similarity=0.295 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 029544 10 TTVIGFGMSAAFIVF 24 (191)
Q Consensus 10 ~~~i~~~~~~~li~~ 24 (191)
.-+.++++++++++.
T Consensus 25 tplM~~~m~lf~vfl 39 (52)
T PF00737_consen 25 TPLMGVFMALFAVFL 39 (52)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 334444444333333
No 195
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=52.79 E-value=12 Score=25.02 Aligned_cols=20 Identities=20% Similarity=0.389 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHhhcccc
Q 029544 18 SAAFIVFICTRIICRRIRGV 37 (191)
Q Consensus 18 ~~~li~~~~~~~~~~r~~~~ 37 (191)
+++++++++..++|++.+.+
T Consensus 50 G~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 50 GLILILIIIALVCCCRAKHK 69 (98)
T ss_pred hhhhHHHHHHHHHHhhhhhh
Confidence 44444455555666666654
No 196
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=52.58 E-value=42 Score=18.98 Aligned_cols=11 Identities=18% Similarity=0.489 Sum_probs=4.6
Q ss_pred HHHHHHHhhcc
Q 029544 25 ICTRIICRRIR 35 (191)
Q Consensus 25 ~~~~~~~~r~~ 35 (191)
++.+++.++.+
T Consensus 28 ~~~~~F~~k~~ 38 (42)
T PF11346_consen 28 FFIRYFIRKMK 38 (42)
T ss_pred HHHHHHHHHHc
Confidence 33444444433
No 197
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.45 E-value=37 Score=27.03 Aligned_cols=27 Identities=19% Similarity=0.344 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccC
Q 029544 12 VIGFGMSAAFIVFICTRIICRRIRGVE 38 (191)
Q Consensus 12 ~i~~~~~~~li~~~~~~~~~~r~~~~~ 38 (191)
++++++++++++.++..+++++.+...
T Consensus 4 ~v~vlVaa~llV~~i~l~l~~r~raA~ 30 (299)
T KOG3054|consen 4 IVAVLVAAALLVAVILLFLWKRRRAAR 30 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 344455555556665666666655544
No 198
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=52.31 E-value=11 Score=31.11 Aligned_cols=45 Identities=18% Similarity=0.442 Sum_probs=29.8
Q ss_pred CCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCC---Ccccccc
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKK---TTCPVCR 131 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~---~~CP~Cr 131 (191)
-+.||+=-+.-.+......+ .|||+.-.+-++...+.. ..||.|-
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml-~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 336 LFICPVLKELCTDENPPVML-ECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred eeeccccHhhhcccCCCeee-eccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 45688755544433333334 599999999998876633 3499994
No 199
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=51.64 E-value=4.9 Score=34.03 Aligned_cols=28 Identities=29% Similarity=0.512 Sum_probs=0.0
Q ss_pred CCCCcccHhhHHHHhc---CCCccccccccc
Q 029544 107 QCGHSFHLACIDIWLR---KKTTCPVCRLPL 134 (191)
Q Consensus 107 ~C~H~f~~~Ci~~wl~---~~~~CP~Cr~~~ 134 (191)
.|||++..+=+..--. ....||+||..-
T Consensus 308 ~CGHVhG~h~Wg~~~~~~~~~r~CPlCr~~g 338 (416)
T PF04710_consen 308 NCGHVHGYHNWGQDSDRDPRSRTCPLCRQVG 338 (416)
T ss_dssp -------------------------------
T ss_pred cccceeeecccccccccccccccCCCccccC
Confidence 6999887665432111 245699999643
No 200
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=51.42 E-value=2 Score=27.16 Aligned_cols=42 Identities=31% Similarity=0.603 Sum_probs=21.5
Q ss_pred CcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCC
Q 029544 87 AECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDP 137 (191)
Q Consensus 87 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 137 (191)
..|+.|...+... =+|.+|..|-..+ .....||-|..++...
T Consensus 2 ~~CP~C~~~L~~~--------~~~~~C~~C~~~~-~~~a~CPdC~~~Le~L 43 (70)
T PF07191_consen 2 NTCPKCQQELEWQ--------GGHYHCEACQKDY-KKEAFCPDCGQPLEVL 43 (70)
T ss_dssp -B-SSS-SBEEEE--------TTEEEETTT--EE-EEEEE-TTT-SB-EEE
T ss_pred CcCCCCCCccEEe--------CCEEECccccccc-eecccCCCcccHHHHH
Confidence 3688888775532 2566677776543 3445699998877643
No 201
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.35 E-value=4.1 Score=29.15 Aligned_cols=52 Identities=23% Similarity=0.417 Sum_probs=27.2
Q ss_pred CCCCCCcCccccc-ccccCccEEEcCCCCCcccHhhHHHHhcC-CC---ccccccccc
Q 029544 82 KSVEDAECSICLG-EYQDKEVLRIMPQCGHSFHLACIDIWLRK-KT---TCPVCRLPL 134 (191)
Q Consensus 82 ~~~~~~~C~IC~~-~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~-~~---~CP~Cr~~~ 134 (191)
....+..|.||.. .|.++....... |.-.||..|--+.-.. ++ .|-+|+...
T Consensus 61 Gv~ddatC~IC~KTKFADG~GH~C~Y-Cq~r~CARCGGrv~lrsNKv~wvcnlc~k~q 117 (169)
T KOG3799|consen 61 GVGDDATCGICHKTKFADGCGHNCSY-CQTRFCARCGGRVSLRSNKVMWVCNLCRKQQ 117 (169)
T ss_pred ccCcCcchhhhhhcccccccCcccch-hhhhHHHhcCCeeeeccCceEEeccCCcHHH
Confidence 4466788999996 455542221121 3333555554333222 22 388888644
No 202
>PF11359 gpUL132: Glycoprotein UL132; InterPro: IPR021023 Glycoprotein UL132 is a low-abundance structural component of Human herpesvirus 5 []. The function of this protein is not fully understood.
Probab=51.28 E-value=26 Score=27.13 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 029544 8 LITTVIGFGMSAAFIVFICTRIICR 32 (191)
Q Consensus 8 ~v~~~i~~~~~~~li~~~~~~~~~~ 32 (191)
+++++.++.+.-++++.+.+.+..|
T Consensus 54 liYcVTg~sllsli~VtvaalYsSC 78 (235)
T PF11359_consen 54 LIYCVTGFSLLSLIVVTVAALYSSC 78 (235)
T ss_pred heeeehhHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555444
No 203
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=51.21 E-value=15 Score=21.46 Aligned_cols=39 Identities=28% Similarity=0.611 Sum_probs=22.6
Q ss_pred CcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCC
Q 029544 89 CSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDP 137 (191)
Q Consensus 89 C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 137 (191)
|..|...+.....+.. .-+..||..| ..|-.|+.++...
T Consensus 1 C~~C~~~I~~~~~~~~--~~~~~~H~~C--------f~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIK--AMGKFWHPEC--------FKCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESSSSEEEE--ETTEEEETTT--------SBETTTTCBTTTS
T ss_pred CCCCCCCccCcEEEEE--eCCcEEEccc--------cccCCCCCccCCC
Confidence 4556666554443321 2566777766 5677777766543
No 204
>PRK00575 tatA twin arginine translocase protein A; Provisional
Probab=50.50 E-value=17 Score=24.25 Aligned_cols=12 Identities=8% Similarity=-0.244 Sum_probs=7.0
Q ss_pred CCCCchhHHHHH
Q 029544 1 MWGSGMNLITTV 12 (191)
Q Consensus 1 ~~g~~~~~v~~~ 12 (191)
|+|+|.+-+++|
T Consensus 1 m~~iG~~ElliI 12 (92)
T PRK00575 1 MGSLSPWHWAIL 12 (92)
T ss_pred CCcccHHHHHHH
Confidence 777776644333
No 205
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=50.13 E-value=43 Score=22.74 Aligned_cols=17 Identities=6% Similarity=0.051 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHhhccc
Q 029544 20 AFIVFICTRIICRRIRG 36 (191)
Q Consensus 20 ~li~~~~~~~~~~r~~~ 36 (191)
+||++.+-.-+|++++.
T Consensus 32 lLIalaaKC~~~~k~~~ 48 (102)
T PF15176_consen 32 LLIALAAKCPVWYKYLA 48 (102)
T ss_pred HHHHHHHHhHHHHHHHh
Confidence 33333333333444433
No 206
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=50.09 E-value=5.6 Score=36.09 Aligned_cols=52 Identities=19% Similarity=0.422 Sum_probs=32.5
Q ss_pred CCcCcccccccccCc-cE------EEcCCCCCcccHhhHHHHh----------cCCCccccccccccCCC
Q 029544 86 DAECSICLGEYQDKE-VL------RIMPQCGHSFHLACIDIWL----------RKKTTCPVCRLPLQDPL 138 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~-~~------~~~~~C~H~f~~~Ci~~wl----------~~~~~CP~Cr~~~~~~~ 138 (191)
...|.||-|.=.+.. .. -+. .|...||..|....= .+-+-|-.|+..|.+.+
T Consensus 117 nKtCYIC~E~GrpnkA~~GACMtCNKs-~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~HfsKlk 185 (900)
T KOG0956|consen 117 NKTCYICNEEGRPNKAAKGACMTCNKS-GCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFSKLK 185 (900)
T ss_pred cceeeeecccCCccccccccceecccc-cchhhhhhhHhhhhccceeccccccccceechhHHHHHHHhh
Confidence 346999998743321 11 122 477889999987541 13345999998776543
No 207
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=49.57 E-value=5.5 Score=32.48 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 029544 10 TTVIGFGMSAAFIVFICTRIICRR 33 (191)
Q Consensus 10 ~~~i~~~~~~~li~~~~~~~~~~r 33 (191)
.++.++++++++++..++.++|.|
T Consensus 148 T~IpaVVI~~iLLIA~iIa~icyr 171 (290)
T PF05454_consen 148 TFIPAVVIAAILLIAGIIACICYR 171 (290)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334444444444444434444444
No 208
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=48.04 E-value=33 Score=26.27 Aligned_cols=26 Identities=12% Similarity=0.185 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 029544 6 MNLITTVIGFGMSAAFIVFICTRIIC 31 (191)
Q Consensus 6 ~~~v~~~i~~~~~~~li~~~~~~~~~ 31 (191)
|.++++++++++++++.+++......
T Consensus 1 ~~ii~~i~~~~vG~~~G~~~~~~~~~ 26 (201)
T PF12072_consen 1 MIIIIAIVALIVGIGIGYLVRKKINR 26 (201)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666665555444433
No 209
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=47.68 E-value=6.1 Score=34.19 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 029544 10 TTVIGFGMSAAFIVFI 25 (191)
Q Consensus 10 ~~~i~~~~~~~li~~~ 25 (191)
++++++++++++++.+
T Consensus 356 ~vVlgvavlivVv~vi 371 (439)
T PF02480_consen 356 GVVLGVAVLIVVVGVI 371 (439)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444433333333
No 210
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=47.62 E-value=7.1 Score=23.44 Aligned_cols=19 Identities=37% Similarity=0.856 Sum_probs=14.6
Q ss_pred EEEcCCCCCcccHhhHHHH
Q 029544 102 LRIMPQCGHSFHLACIDIW 120 (191)
Q Consensus 102 ~~~~~~C~H~f~~~Ci~~w 120 (191)
....+.|+|.||..|..+|
T Consensus 40 ~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 40 RVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred eeECCCCCCeECCCCCCcC
Confidence 3444458999999998887
No 211
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=47.48 E-value=36 Score=24.97 Aligned_cols=7 Identities=14% Similarity=0.302 Sum_probs=3.9
Q ss_pred CCCCchh
Q 029544 1 MWGSGMN 7 (191)
Q Consensus 1 ~~g~~~~ 7 (191)
|+|+..+
T Consensus 3 ~~~~~~~ 9 (164)
T PRK14473 3 KLGINLG 9 (164)
T ss_pred cccCcHH
Confidence 5666543
No 212
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.45 E-value=51 Score=20.83 Aligned_cols=22 Identities=14% Similarity=0.126 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 029544 8 LITTVIGFGMSAAFIVFICTRI 29 (191)
Q Consensus 8 ~v~~~i~~~~~~~li~~~~~~~ 29 (191)
+++++++++++++.-+|+..++
T Consensus 7 il~ivl~ll~G~~~G~fiark~ 28 (71)
T COG3763 7 ILLIVLALLAGLIGGFFIARKQ 28 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333
No 213
>CHL00066 psbH photosystem II protein H
Probab=47.22 E-value=36 Score=21.59 Aligned_cols=17 Identities=18% Similarity=0.325 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029544 9 ITTVIGFGMSAAFIVFI 25 (191)
Q Consensus 9 v~~~i~~~~~~~li~~~ 25 (191)
...+.++++++++++.+
T Consensus 39 Ttp~Mgv~m~lf~vfl~ 55 (73)
T CHL00066 39 TTPLMGVAMALFAVFLS 55 (73)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 33444444444443333
No 214
>PF14979 TMEM52: Transmembrane 52
Probab=47.09 E-value=56 Score=23.84 Aligned_cols=20 Identities=10% Similarity=0.062 Sum_probs=9.7
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 029544 6 MNLITTVIGFGMSAAFIVFI 25 (191)
Q Consensus 6 ~~~v~~~i~~~~~~~li~~~ 25 (191)
+|.|.+++.+++.+++.-+.
T Consensus 19 LWyIwLill~~~llLLCG~t 38 (154)
T PF14979_consen 19 LWYIWLILLIGFLLLLCGLT 38 (154)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 35555555555544444333
No 215
>PLN00055 photosystem II reaction center protein H; Provisional
Probab=47.06 E-value=36 Score=21.61 Aligned_cols=17 Identities=18% Similarity=0.325 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029544 9 ITTVIGFGMSAAFIVFI 25 (191)
Q Consensus 9 v~~~i~~~~~~~li~~~ 25 (191)
...+.++++++++++.+
T Consensus 39 Ttp~Mg~~m~lf~vfl~ 55 (73)
T PLN00055 39 TTPLMGVAMALFAVFLS 55 (73)
T ss_pred chhHHHHHHHHHHHHHH
Confidence 33444444444444333
No 216
>PF15179 Myc_target_1: Myc target protein 1
Probab=47.02 E-value=49 Score=25.09 Aligned_cols=27 Identities=4% Similarity=0.091 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029544 7 NLITTVIGFGMSAAFIVFICTRIICRR 33 (191)
Q Consensus 7 ~~v~~~i~~~~~~~li~~~~~~~~~~r 33 (191)
.++.+.++.++++++-.++++.+.|.-
T Consensus 21 lIlaF~vSm~iGLviG~li~~LltwlS 47 (197)
T PF15179_consen 21 LILAFCVSMAIGLVIGALIWALLTWLS 47 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555445555554543
No 217
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=46.69 E-value=13 Score=33.67 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=14.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 029544 5 GMNLITTVIGFGMSAAFIVFICTRIIC 31 (191)
Q Consensus 5 ~~~~v~~~i~~~~~~~li~~~~~~~~~ 31 (191)
.+||++.+++-++.+++|++++...+|
T Consensus 268 NlWII~gVlvPv~vV~~Iiiil~~~LC 294 (684)
T PF12877_consen 268 NLWIIAGVLVPVLVVLLIIIILYWKLC 294 (684)
T ss_pred CeEEEehHhHHHHHHHHHHHHHHHHHh
Confidence 356666665555555555555555545
No 218
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=46.57 E-value=29 Score=26.10 Aligned_cols=25 Identities=12% Similarity=0.489 Sum_probs=11.6
Q ss_pred CCCCchhHHHH-HHHHHHHHHHHHHH
Q 029544 1 MWGSGMNLITT-VIGFGMSAAFIVFI 25 (191)
Q Consensus 1 ~~g~~~~~v~~-~i~~~~~~~li~~~ 25 (191)
|||....++.+ ++.|++.+.++.++
T Consensus 19 ~f~~n~~~~~~~~Inflill~lL~~f 44 (184)
T CHL00019 19 SFGFNTDILETNLINLSVVLGVLIYF 44 (184)
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 46665554443 44444433333333
No 219
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=46.43 E-value=3.7 Score=30.06 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029544 11 TVIGFGMSAAFIVFICT 27 (191)
Q Consensus 11 ~~i~~~~~~~li~~~~~ 27 (191)
+++++++++++++.+++
T Consensus 54 vVVGVGg~ill~il~lv 70 (154)
T PF04478_consen 54 VVVGVGGPILLGILALV 70 (154)
T ss_pred EEecccHHHHHHHHHhh
Confidence 34455554444433333
No 220
>COG1826 TatA Sec-independent protein secretion pathway components [Intracellular trafficking and secretion]
Probab=45.87 E-value=23 Score=23.67 Aligned_cols=13 Identities=23% Similarity=0.595 Sum_probs=6.8
Q ss_pred CCCCchhHHHHHH
Q 029544 1 MWGSGMNLITTVI 13 (191)
Q Consensus 1 ~~g~~~~~v~~~i 13 (191)
|+++|.+-+++|+
T Consensus 1 M~~ig~~elliIl 13 (94)
T COG1826 1 MFGIGWSELLIIL 13 (94)
T ss_pred CCCCCHHHHHHHH
Confidence 6766654444433
No 221
>PRK02624 psbH photosystem II reaction center protein H; Provisional
Probab=45.54 E-value=44 Score=20.56 Aligned_cols=17 Identities=18% Similarity=0.258 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029544 9 ITTVIGFGMSAAFIVFI 25 (191)
Q Consensus 9 v~~~i~~~~~~~li~~~ 25 (191)
...+.++++++++++.+
T Consensus 27 TTplMgv~m~Lf~vFl~ 43 (64)
T PRK02624 27 TTPVMAVFMVLFLVFLL 43 (64)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 34445555544444443
No 222
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.10 E-value=37 Score=24.24 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=17.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029544 5 GMNLITTVIGFGMSAAFIVFICTRIICR 32 (191)
Q Consensus 5 ~~~~v~~~i~~~~~~~li~~~~~~~~~~ 32 (191)
-|.|++++|++++++++-+++ +|+.-.
T Consensus 5 ~~~W~~a~igLvvGi~IG~li-~Rlt~~ 31 (138)
T COG3105 5 FMTWEYALIGLVVGIIIGALI-ARLTNR 31 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHcch
Confidence 367788888888876554444 555443
No 223
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=44.94 E-value=13 Score=29.95 Aligned_cols=48 Identities=31% Similarity=0.603 Sum_probs=33.0
Q ss_pred CcCcccccccccCccEE---EcCCCCCcccHhhHHHHhc---------CCCccccccccc
Q 029544 87 AECSICLGEYQDKEVLR---IMPQCGHSFHLACIDIWLR---------KKTTCPVCRLPL 134 (191)
Q Consensus 87 ~~C~IC~~~~~~~~~~~---~~~~C~H~f~~~Ci~~wl~---------~~~~CP~Cr~~~ 134 (191)
..|-+|...+.+....+ .-+.|.-.+|..|+...+. ....||.|++.+
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 47999999985443332 2235888899999988443 123499999844
No 224
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=44.63 E-value=74 Score=20.62 Aligned_cols=35 Identities=11% Similarity=0.289 Sum_probs=16.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 029544 5 GMNLITTVIGFGMSAAFIVFICTRIICRRIRGVESR 40 (191)
Q Consensus 5 ~~~~v~~~i~~~~~~~li~~~~~~~~~~r~~~~~~r 40 (191)
...++..++...+.+.+++ +.+-|+|.|.|++..+
T Consensus 32 s~g~LaGiV~~D~vlTLLI-v~~vy~car~r~r~~~ 66 (79)
T PF07213_consen 32 SPGLLAGIVAADAVLTLLI-VLVVYYCARPRRRPTQ 66 (79)
T ss_pred CHHHHHHHHHHHHHHHHHH-HHHHHhhcccccCCcc
Confidence 3444555555555443333 3344555555554443
No 225
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=44.53 E-value=1.1e+02 Score=21.35 Aligned_cols=26 Identities=27% Similarity=0.567 Sum_probs=16.7
Q ss_pred CCCCcccHhhHHHHhcCCCccccccccccCCC
Q 029544 107 QCGHSFHLACIDIWLRKKTTCPVCRLPLQDPL 138 (191)
Q Consensus 107 ~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~ 138 (191)
.|++. ...+.+...|+.|+.++..+.
T Consensus 74 ~C~K~------TKmLGr~D~CM~C~~pLTLd~ 99 (114)
T PF11023_consen 74 NCGKQ------TKMLGRVDACMHCKEPLTLDP 99 (114)
T ss_pred CCCCh------HhhhchhhccCcCCCcCccCc
Confidence 67763 123344456999999997553
No 226
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=43.83 E-value=37 Score=21.11 Aligned_cols=21 Identities=14% Similarity=0.274 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029544 11 TVIGFGMSAAFIVFICTRIIC 31 (191)
Q Consensus 11 ~~i~~~~~~~li~~~~~~~~~ 31 (191)
+++++++++++-+|+..+++-
T Consensus 3 iilali~G~~~Gff~ar~~~~ 23 (64)
T PF03672_consen 3 IILALIVGAVIGFFIARKYME 23 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555444433
No 227
>PLN02189 cellulose synthase
Probab=43.71 E-value=33 Score=32.97 Aligned_cols=52 Identities=23% Similarity=0.541 Sum_probs=34.5
Q ss_pred CCcCcccccccc---cCccEEEcCCCCCcccHhhHHHHhc-CCCccccccccccCC
Q 029544 86 DAECSICLGEYQ---DKEVLRIMPQCGHSFHLACIDIWLR-KKTTCPVCRLPLQDP 137 (191)
Q Consensus 86 ~~~C~IC~~~~~---~~~~~~~~~~C~H~f~~~Ci~~wl~-~~~~CP~Cr~~~~~~ 137 (191)
...|.||-+++. +++.-.....|+--.|..|.+-=-+ .+..||.|+..+...
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~ 89 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRL 89 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhc
Confidence 447999999865 2333333334766789999843222 566799999988733
No 228
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=43.42 E-value=7.3 Score=32.04 Aligned_cols=48 Identities=15% Similarity=0.186 Sum_probs=30.4
Q ss_pred CCCcCcccccccccCccEEEcC--CCCCcccHhhHHHHhcCCCccccccc
Q 029544 85 EDAECSICLGEYQDKEVLRIMP--QCGHSFHLACIDIWLRKKTTCPVCRL 132 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~--~C~H~f~~~Ci~~wl~~~~~CP~Cr~ 132 (191)
....|++|-..-.-........ .=.+.+|..|-.+|-.....||.|..
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 3457999998643322111000 12255777788899888888999975
No 229
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=43.16 E-value=15 Score=28.87 Aligned_cols=25 Identities=20% Similarity=0.507 Sum_probs=19.1
Q ss_pred cccHhhHHHHhcCCCcccccccccc
Q 029544 111 SFHLACIDIWLRKKTTCPVCRLPLQ 135 (191)
Q Consensus 111 ~f~~~Ci~~wl~~~~~CP~Cr~~~~ 135 (191)
--|..|-.+.-.+...||+|+..--
T Consensus 195 K~C~sC~qqIHRNAPiCPlCK~KsR 219 (230)
T PF10146_consen 195 KTCQSCHQQIHRNAPICPLCKAKSR 219 (230)
T ss_pred chhHhHHHHHhcCCCCCcccccccc
Confidence 3677888887677788999997554
No 230
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=42.92 E-value=60 Score=21.11 Aligned_cols=28 Identities=11% Similarity=0.094 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 029544 8 LITTVIGFGMSAAFIVFICTRIICRRIR 35 (191)
Q Consensus 8 ~v~~~i~~~~~~~li~~~~~~~~~~r~~ 35 (191)
+.++-+++++..+.++++++..+.+...
T Consensus 10 l~v~GM~~VF~fL~lLi~~i~~~~~~~~ 37 (82)
T TIGR01195 10 LTVLGMGIVFLFLSLLIYAVRGMGKVVG 37 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444334444444444444433
No 231
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=42.81 E-value=20 Score=21.15 Aligned_cols=23 Identities=35% Similarity=0.879 Sum_probs=12.3
Q ss_pred CCCCcccHhhHHHHhcCCCccccc
Q 029544 107 QCGHSFHLACIDIWLRKKTTCPVC 130 (191)
Q Consensus 107 ~C~H~f~~~Ci~~wl~~~~~CP~C 130 (191)
.|||.|-..=-.+- .....||.|
T Consensus 33 ~Cgh~w~~~v~~R~-~~~~~CP~C 55 (55)
T PF14311_consen 33 KCGHEWKASVNDRT-RRGKGCPYC 55 (55)
T ss_pred CCCCeeEccHhhhc-cCCCCCCCC
Confidence 56776544322221 345568887
No 232
>PRK00442 tatA twin arginine translocase protein A; Provisional
Probab=42.63 E-value=31 Score=23.09 Aligned_cols=13 Identities=8% Similarity=-0.138 Sum_probs=6.8
Q ss_pred CCCCchhHHHHHH
Q 029544 1 MWGSGMNLITTVI 13 (191)
Q Consensus 1 ~~g~~~~~v~~~i 13 (191)
|.++|.+-+++++
T Consensus 1 Mg~~g~~elliIl 13 (92)
T PRK00442 1 MGIFDWKHWIVIL 13 (92)
T ss_pred CCCccHHHHHHHH
Confidence 6666655444443
No 233
>PRK01371 sec-independent translocase; Provisional
Probab=42.39 E-value=18 Score=26.10 Aligned_cols=14 Identities=21% Similarity=0.451 Sum_probs=8.7
Q ss_pred CCCCchhHHHHHHH
Q 029544 1 MWGSGMNLITTVIG 14 (191)
Q Consensus 1 ~~g~~~~~v~~~i~ 14 (191)
|||+|..-+++++.
T Consensus 1 MfgIG~~EllvIlv 14 (137)
T PRK01371 1 MFGIGPGELVVLVV 14 (137)
T ss_pred CCCccHHHHHHHHH
Confidence 88988765444433
No 234
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=41.96 E-value=67 Score=18.34 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 029544 8 LITTVIGFGMSAAFIVFICTRII 30 (191)
Q Consensus 8 ~v~~~i~~~~~~~li~~~~~~~~ 30 (191)
+..+++++++.+.+..++-+.++
T Consensus 4 wlt~iFsvvIil~If~~iGl~Iy 26 (49)
T PF11044_consen 4 WLTTIFSVVIILGIFAWIGLSIY 26 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443333333333333
No 235
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=41.60 E-value=64 Score=17.95 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 029544 6 MNLITTVIGFGMSAAFIVFIC 26 (191)
Q Consensus 6 ~~~v~~~i~~~~~~~li~~~~ 26 (191)
+++|.++.++.+..++-+|++
T Consensus 10 LWlVgtv~G~~vi~lvglFfY 30 (40)
T PF01788_consen 10 LWLVGTVAGIAVIGLVGLFFY 30 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhee
Confidence 566667766666555555553
No 236
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=41.06 E-value=11 Score=31.02 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=30.5
Q ss_pred CCCcCcccccccccCccEEEcC-CCCCcccHhhHHHHhcCCCccccccc
Q 029544 85 EDAECSICLGEYQDKEVLRIMP-QCGHSFHLACIDIWLRKKTTCPVCRL 132 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~-~C~H~f~~~Ci~~wl~~~~~CP~Cr~ 132 (191)
....|++|-..-.-........ .=.+.+|..|-.+|-.....||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 4567999988743331110000 12345777888899888888999975
No 237
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=40.88 E-value=29 Score=18.70 Aligned_cols=12 Identities=25% Similarity=0.745 Sum_probs=7.0
Q ss_pred cCcccccccccC
Q 029544 88 ECSICLGEYQDK 99 (191)
Q Consensus 88 ~C~IC~~~~~~~ 99 (191)
+|+-|...|..+
T Consensus 4 ~Cp~C~~~y~i~ 15 (36)
T PF13717_consen 4 TCPNCQAKYEID 15 (36)
T ss_pred ECCCCCCEEeCC
Confidence 466666666543
No 238
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=40.69 E-value=64 Score=25.72 Aligned_cols=21 Identities=10% Similarity=0.139 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHhhccccCC
Q 029544 19 AAFIVFICTRIICRRIRGVES 39 (191)
Q Consensus 19 ~~li~~~~~~~~~~r~~~~~~ 39 (191)
+++.++.+..++..|+|++..
T Consensus 44 I~~~V~~~~~~~~~k~R~~~~ 64 (247)
T COG1622 44 IVLPVIVLLVYFAWKYRASNN 64 (247)
T ss_pred HHHHHHHHHHHHHhhhhhcCC
Confidence 344444444444445544443
No 239
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.99 E-value=19 Score=32.75 Aligned_cols=46 Identities=26% Similarity=0.527 Sum_probs=33.3
Q ss_pred cCcccccccccCccEEEcCCCCC-cccHhhHHHHhc--C----CCccccccccccCC
Q 029544 88 ECSICLGEYQDKEVLRIMPQCGH-SFHLACIDIWLR--K----KTTCPVCRLPLQDP 137 (191)
Q Consensus 88 ~C~IC~~~~~~~~~~~~~~~C~H-~f~~~Ci~~wl~--~----~~~CP~Cr~~~~~~ 137 (191)
.|+||-..+.-...- .|+| .-|..|..+... . .+.||+|+..+...
T Consensus 2 ~c~ic~~s~~~~~~~----s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~~ 54 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRG----SCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVETK 54 (669)
T ss_pred CcceeecCccccccc----cccccccchhhhhhhhhhcccccccccCcccccceeee
Confidence 488998776654444 7999 899999877643 3 34589999877543
No 240
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=39.90 E-value=17 Score=19.14 Aligned_cols=9 Identities=44% Similarity=1.025 Sum_probs=6.4
Q ss_pred CCccccccc
Q 029544 124 KTTCPVCRL 132 (191)
Q Consensus 124 ~~~CP~Cr~ 132 (191)
...||+|..
T Consensus 17 ~~~CP~Cg~ 25 (33)
T cd00350 17 PWVCPVCGA 25 (33)
T ss_pred CCcCcCCCC
Confidence 446999965
No 241
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=39.81 E-value=52 Score=23.29 Aligned_cols=18 Identities=11% Similarity=0.182 Sum_probs=8.6
Q ss_pred CCCCchhHHHHHHHHHHH
Q 029544 1 MWGSGMNLITTVIGFGMS 18 (191)
Q Consensus 1 ~~g~~~~~v~~~i~~~~~ 18 (191)
|+.....+++.++.|++.
T Consensus 1 ~~~~~~t~~~~~i~flil 18 (140)
T PRK07353 1 LFDFDATLPLMAVQFVLL 18 (140)
T ss_pred CcccchhHHHHHHHHHHH
Confidence 555554444444444433
No 242
>PLN02436 cellulose synthase A
Probab=38.97 E-value=43 Score=32.35 Aligned_cols=51 Identities=24% Similarity=0.544 Sum_probs=34.0
Q ss_pred CCcCcccccccc---cCccEEEcCCCCCcccHhhHHHHhc-CCCccccccccccC
Q 029544 86 DAECSICLGEYQ---DKEVLRIMPQCGHSFHLACIDIWLR-KKTTCPVCRLPLQD 136 (191)
Q Consensus 86 ~~~C~IC~~~~~---~~~~~~~~~~C~H~f~~~Ci~~wl~-~~~~CP~Cr~~~~~ 136 (191)
...|-||-++.. +++.-.-...|+--.|..|.+-=-+ .+..||.|+..+..
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 447999999864 3343333334666689999843222 55679999998873
No 243
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=38.66 E-value=65 Score=22.51 Aligned_cols=24 Identities=29% Similarity=0.243 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHhh
Q 029544 10 TTVIGFGMSAAFI---VFICTRIICRR 33 (191)
Q Consensus 10 ~~~i~~~~~~~li---~~~~~~~~~~r 33 (191)
-.+|+..+.+++. .+.+++..|+|
T Consensus 87 p~VIGGLcaL~LaamGA~~LLrR~cRr 113 (126)
T PF03229_consen 87 PLVIGGLCALTLAAMGAGALLRRCCRR 113 (126)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444333 33444443443
No 244
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=38.48 E-value=59 Score=24.43 Aligned_cols=21 Identities=19% Similarity=0.255 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 029544 12 VIGFGMSAAFIVFICTRIICR 32 (191)
Q Consensus 12 ~i~~~~~~~li~~~~~~~~~~ 32 (191)
++.+++..+++++++.++++.
T Consensus 34 ~~~~lI~F~iL~~ll~k~l~~ 54 (181)
T PRK13454 34 IFWLLVTLVAIYFVLTRVALP 54 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333343444444
No 245
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=38.24 E-value=28 Score=27.35 Aligned_cols=27 Identities=22% Similarity=0.557 Sum_probs=19.5
Q ss_pred CcccHhhHHHHhcCCCccccccccccC
Q 029544 110 HSFHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 110 H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
.--|..|..+.-.+...||+|+.....
T Consensus 249 MK~ClsChqqIHRNAPiCPlCKaKsRS 275 (286)
T KOG4451|consen 249 MKVCLSCHQQIHRNAPICPLCKAKSRS 275 (286)
T ss_pred chHHHHHHHHHhcCCCCCcchhhcccc
Confidence 345677777776777889999976543
No 246
>PRK01919 tatB sec-independent translocase; Provisional
Probab=37.70 E-value=25 Score=26.29 Aligned_cols=12 Identities=17% Similarity=0.387 Sum_probs=7.7
Q ss_pred CCCCchhHHHHH
Q 029544 1 MWGSGMNLITTV 12 (191)
Q Consensus 1 ~~g~~~~~v~~~ 12 (191)
|||+|+.=+++|
T Consensus 1 MFdIG~~ElliI 12 (169)
T PRK01919 1 MIDLGLSKLALI 12 (169)
T ss_pred CCCCcHHHHHHH
Confidence 899886544433
No 247
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=37.68 E-value=35 Score=26.63 Aligned_cols=13 Identities=8% Similarity=0.416 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 029544 19 AAFIVFICTRIIC 31 (191)
Q Consensus 19 ~~li~~~~~~~~~ 31 (191)
++||+++.+.+|.
T Consensus 24 ~lLIiiva~~lf~ 36 (217)
T PF07423_consen 24 SLLIIIVAYQLFF 36 (217)
T ss_pred HHHHHHHhhhhee
Confidence 3444444444433
No 248
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=37.33 E-value=63 Score=23.85 Aligned_cols=22 Identities=5% Similarity=-0.038 Sum_probs=11.6
Q ss_pred CCCCchhHHHHHHHHHHHHHHH
Q 029544 1 MWGSGMNLITTVIGFGMSAAFI 22 (191)
Q Consensus 1 ~~g~~~~~v~~~i~~~~~~~li 22 (191)
+|+.....++.++.|++.++++
T Consensus 4 ~~~~~~~~~w~~i~f~il~~iL 25 (167)
T PRK14475 4 FFNLSNPEFWVGAGLLIFFGIL 25 (167)
T ss_pred CCCCCchHHHHHHHHHHHHHHH
Confidence 3555555566555555544333
No 249
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=37.27 E-value=22 Score=32.85 Aligned_cols=48 Identities=27% Similarity=0.572 Sum_probs=29.2
Q ss_pred CCCCcCcccccccccC---------ccEEEcCCCCCcccHhhHHHHhcCCCcccccccccc
Q 029544 84 VEDAECSICLGEYQDK---------EVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQ 135 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~---------~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~ 135 (191)
..+..|+-|...|... ......|.|.|.-|..=|. ..+.||+|.....
T Consensus 1129 ~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs----~y~~CPLCHs~~~ 1185 (1189)
T KOG2041|consen 1129 PYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEIS----KYNCCPLCHSMES 1185 (1189)
T ss_pred ccCCCChhhcCcCceeeccCCccccceEEEcccccccccccccc----ccccCccccChhh
Confidence 3456677777665421 1233455688877765543 3477999986553
No 250
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=37.03 E-value=26 Score=31.76 Aligned_cols=8 Identities=25% Similarity=0.252 Sum_probs=2.9
Q ss_pred hccccCCC
Q 029544 33 RIRGVESR 40 (191)
Q Consensus 33 r~~~~~~r 40 (191)
|++.+..+
T Consensus 417 r~~~ka~s 424 (807)
T KOG1094|consen 417 RLLSKASS 424 (807)
T ss_pred HHHhhhcc
Confidence 33333333
No 251
>PHA02650 hypothetical protein; Provisional
Probab=36.86 E-value=1.1e+02 Score=19.86 Aligned_cols=20 Identities=10% Similarity=0.032 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 029544 16 GMSAAFIVFICTRIICRRIR 35 (191)
Q Consensus 16 ~~~~~li~~~~~~~~~~r~~ 35 (191)
++.++++++++..++-.-.|
T Consensus 56 i~~v~i~~l~~flYLK~~~r 75 (81)
T PHA02650 56 IFSLIIVALFSFFVFKGYTR 75 (81)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 33345555555555443333
No 252
>PHA03048 IMV membrane protein; Provisional
Probab=36.41 E-value=93 Score=20.65 Aligned_cols=30 Identities=10% Similarity=-0.021 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 029544 7 NLITTVIGFGMSAAFIVFICTRIICRRIRG 36 (191)
Q Consensus 7 ~~v~~~i~~~~~~~li~~~~~~~~~~r~~~ 36 (191)
+-.+-++.|++++++++.+++...+.|+..
T Consensus 43 wRalsii~FIlgivl~lG~~ifsmy~r~C~ 72 (93)
T PHA03048 43 WRALSGIAFVLGIVMTIGMLIYSMWGRYCT 72 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 345556777777778887777777776665
No 253
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=36.05 E-value=25 Score=23.79 Aligned_cols=18 Identities=11% Similarity=0.189 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029544 10 TTVIGFGMSAAFIVFICT 27 (191)
Q Consensus 10 ~~~i~~~~~~~li~~~~~ 27 (191)
+++++++..+++++++++
T Consensus 63 iili~lls~v~IlVily~ 80 (101)
T PF06024_consen 63 IILISLLSFVCILVILYA 80 (101)
T ss_pred chHHHHHHHHHHHHHHhh
Confidence 334444443344444433
No 254
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=35.80 E-value=42 Score=24.60 Aligned_cols=14 Identities=21% Similarity=0.109 Sum_probs=8.1
Q ss_pred CCCCcCcccccccc
Q 029544 84 VEDAECSICLGEYQ 97 (191)
Q Consensus 84 ~~~~~C~IC~~~~~ 97 (191)
..+...++++-+-.
T Consensus 95 Gg~LSFslAlLD~~ 108 (151)
T PF14584_consen 95 GGDLSFSLALLDDN 108 (151)
T ss_pred cccceeeeEEEeCC
Confidence 44566777665543
No 255
>PLN02400 cellulose synthase
Probab=35.65 E-value=87 Score=30.41 Aligned_cols=53 Identities=17% Similarity=0.399 Sum_probs=33.9
Q ss_pred CCcCccccccccc---CccEEEcCCCCCcccHhhHHHH-hcCCCccccccccccCCC
Q 029544 86 DAECSICLGEYQD---KEVLRIMPQCGHSFHLACIDIW-LRKKTTCPVCRLPLQDPL 138 (191)
Q Consensus 86 ~~~C~IC~~~~~~---~~~~~~~~~C~H~f~~~Ci~~w-l~~~~~CP~Cr~~~~~~~ 138 (191)
...|-||-++... ++.-.-.-.|+---|..|.+-= -..+..||.|+..+.-.+
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~K 92 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRHK 92 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCcccccc
Confidence 4479999998653 3333322246666899998421 225567999999887433
No 256
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=35.63 E-value=37 Score=17.24 Aligned_cols=29 Identities=17% Similarity=0.471 Sum_probs=9.0
Q ss_pred cCcccccccccCccEEEcCCCCCcccHhhH
Q 029544 88 ECSICLGEYQDKEVLRIMPQCGHSFHLACI 117 (191)
Q Consensus 88 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci 117 (191)
.|.+|...... .....-..|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~-~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG-GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC-CceEECccCCCccChhcC
Confidence 46777776655 233333357777887774
No 257
>PF02723 NS3_envE: Non-structural protein NS3/Small envelope protein E; InterPro: IPR003873 This is a family of small nonstructural proteins, well conserved among Coronavirus strains. This protein is also found in Murine hepatitis virus as small envelope protein E.; GO: 0016020 membrane
Probab=35.44 E-value=1.1e+02 Score=20.03 Aligned_cols=28 Identities=18% Similarity=0.309 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 029544 8 LITTVIGFGMSAAFIVFICTRIICRRIR 35 (191)
Q Consensus 8 ~v~~~i~~~~~~~li~~~~~~~~~~r~~ 35 (191)
+++.++.++++++++..+-..+.|++..
T Consensus 20 llvc~~~liv~~AlL~~IqLC~~cc~~~ 47 (82)
T PF02723_consen 20 LLVCLVVLIVCIALLQLIQLCFQCCRLC 47 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3444445555555555555566666554
No 258
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=35.25 E-value=20 Score=21.87 Aligned_cols=15 Identities=27% Similarity=0.961 Sum_probs=11.1
Q ss_pred CCCccccccccccCC
Q 029544 123 KKTTCPVCRLPLQDP 137 (191)
Q Consensus 123 ~~~~CP~Cr~~~~~~ 137 (191)
....||+|..++...
T Consensus 38 ~~p~CPlC~s~M~~~ 52 (59)
T PF14169_consen 38 EEPVCPLCKSPMVSG 52 (59)
T ss_pred CCccCCCcCCccccc
Confidence 345699999887654
No 259
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=35.16 E-value=1.3e+02 Score=23.61 Aligned_cols=18 Identities=17% Similarity=0.405 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHhhccc
Q 029544 19 AAFIVFICTRIICRRIRG 36 (191)
Q Consensus 19 ~~li~~~~~~~~~~r~~~ 36 (191)
|++++|++++++.+|.+.
T Consensus 78 VI~Liy~l~rwL~rR~~~ 95 (219)
T PRK13415 78 VIFLIYALVKWLNKRNRL 95 (219)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 334444444555555443
No 260
>PF15050 SCIMP: SCIMP protein
Probab=34.94 E-value=72 Score=22.45 Aligned_cols=32 Identities=6% Similarity=-0.006 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 029544 9 ITTVIGFGMSAAFIVFICTRIICRRIRGVESR 40 (191)
Q Consensus 9 v~~~i~~~~~~~li~~~~~~~~~~r~~~~~~r 40 (191)
+.+++++.+.++-+++-++.+-.+|+..++.+
T Consensus 8 FWiiLAVaII~vS~~lglIlyCvcR~~lRqGk 39 (133)
T PF15050_consen 8 FWIILAVAIILVSVVLGLILYCVCRWQLRQGK 39 (133)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 34455555433333333333322455444443
No 261
>PHA02898 virion envelope protein; Provisional
Probab=34.75 E-value=1.2e+02 Score=20.08 Aligned_cols=30 Identities=17% Similarity=0.038 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 029544 7 NLITTVIGFGMSAAFIVFICTRIICRRIRG 36 (191)
Q Consensus 7 ~~v~~~i~~~~~~~li~~~~~~~~~~r~~~ 36 (191)
+-.+-++.|++++++++.+++.-.+.|+..
T Consensus 44 wRalSii~FIlgivl~lG~~ifs~y~r~C~ 73 (92)
T PHA02898 44 LRSISIISFILAIILILGIIFFKGYNMFCG 73 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 334556777777777777777776766654
No 262
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=34.69 E-value=19 Score=28.40 Aligned_cols=41 Identities=22% Similarity=0.379 Sum_probs=31.2
Q ss_pred CCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcC--CCcccc
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK--KTTCPV 129 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~--~~~CP~ 129 (191)
+.+|+|-+..+.-+...+ +|+|.|-.+-|...+.. ...||.
T Consensus 189 ~nrCpitl~p~~~pils~---kcnh~~e~D~I~~~lq~~~trvcp~ 231 (275)
T COG5627 189 SNRCPITLNPDFYPILSS---KCNHKPEMDLINKKLQVECTRVCPR 231 (275)
T ss_pred cccCCcccCcchhHHHHh---hhcccccHHHHHHHhcCCceeecch
Confidence 467999887776665544 79999999999999883 444764
No 263
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.21 E-value=5.8 Score=32.12 Aligned_cols=49 Identities=27% Similarity=0.634 Sum_probs=35.2
Q ss_pred CCcCcccccccccC--ccEEEcCC--------CCCcccHhhHHHHhcCC-Cccccccccc
Q 029544 86 DAECSICLGEYQDK--EVLRIMPQ--------CGHSFHLACIDIWLRKK-TTCPVCRLPL 134 (191)
Q Consensus 86 ~~~C~IC~~~~~~~--~~~~~~~~--------C~H~f~~~Ci~~wl~~~-~~CP~Cr~~~ 134 (191)
...|.||...+... .....+.. |+|..|..|+..-+... ..||.|+...
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~~ 266 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWSH 266 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCccccee
Confidence 35699999998832 22222224 99999999999987644 4699998753
No 264
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=34.19 E-value=28 Score=21.24 Aligned_cols=13 Identities=38% Similarity=1.002 Sum_probs=9.1
Q ss_pred CCccccccccccC
Q 029544 124 KTTCPVCRLPLQD 136 (191)
Q Consensus 124 ~~~CP~Cr~~~~~ 136 (191)
+..||+|+..+..
T Consensus 2 k~~CPlCkt~~n~ 14 (61)
T PF05715_consen 2 KSLCPLCKTTLNV 14 (61)
T ss_pred CccCCcccchhhc
Confidence 3568888877743
No 265
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=33.87 E-value=30 Score=19.93 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=22.8
Q ss_pred CcccccccccCccEEEcCCCCCcccHhhHHHHhc
Q 029544 89 CSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR 122 (191)
Q Consensus 89 C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~ 122 (191)
|.||-..-.++..+ .++..|.+|-.+.+.
T Consensus 2 CiiC~~~~~~GI~I-----~~~fIC~~CE~~iv~ 30 (46)
T PF10764_consen 2 CIICGKEKEEGIHI-----YGKFICSDCEKEIVN 30 (46)
T ss_pred eEeCCCcCCCCEEE-----ECeEehHHHHHHhcc
Confidence 88899888877666 788888888777643
No 266
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=33.86 E-value=56 Score=31.61 Aligned_cols=51 Identities=18% Similarity=0.423 Sum_probs=33.3
Q ss_pred CCcCccccccccc---CccEEEcCCCCCcccHhhHHHH-hcCCCccccccccccC
Q 029544 86 DAECSICLGEYQD---KEVLRIMPQCGHSFHLACIDIW-LRKKTTCPVCRLPLQD 136 (191)
Q Consensus 86 ~~~C~IC~~~~~~---~~~~~~~~~C~H~f~~~Ci~~w-l~~~~~CP~Cr~~~~~ 136 (191)
...|-||-++... ++.-.-.-.|+---|..|.+-= -..+..||.|+..+..
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr 71 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKR 71 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 3479999998653 3333322246666899998422 2356679999998873
No 267
>PRK09702 PTS system arbutin-specific transporter subunit IIB; Provisional
Probab=33.82 E-value=67 Score=23.82 Aligned_cols=25 Identities=20% Similarity=0.410 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 029544 10 TTVIGFGMSAAFIVFICTRIICRRI 34 (191)
Q Consensus 10 ~~~i~~~~~~~li~~~~~~~~~~r~ 34 (191)
+..+.+++..++++|+..+++..++
T Consensus 10 ~~~i~iGl~~f~iYyfvF~flI~kf 34 (161)
T PRK09702 10 LTQIAIGLCFTLLYFVVFRTLILQF 34 (161)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444444456666666666555
No 268
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=33.63 E-value=1.3e+02 Score=19.50 Aligned_cols=31 Identities=13% Similarity=0.310 Sum_probs=18.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029544 2 WGSGMNLITTVIGFGMSAAFIVFICTRIICR 32 (191)
Q Consensus 2 ~g~~~~~v~~~i~~~~~~~li~~~~~~~~~~ 32 (191)
||.-.+..+-.++..+..+++++++++++.+
T Consensus 40 ~GlPlWF~~SCi~~~il~~~l~~~~vk~~Fk 70 (80)
T PF06196_consen 40 FGLPLWFFYSCIGGPILFIILVWLMVKFFFK 70 (80)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555666666665555555556665666553
No 269
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=33.46 E-value=77 Score=24.65 Aligned_cols=17 Identities=6% Similarity=0.104 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029544 8 LITTVIGFGMSAAFIVF 24 (191)
Q Consensus 8 ~v~~~i~~~~~~~li~~ 24 (191)
+++.+|.|.+.++++.+
T Consensus 130 mLIClIIIAVLfLICT~ 146 (227)
T PF05399_consen 130 MLICLIIIAVLFLICTL 146 (227)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444433333333
No 270
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=33.26 E-value=10 Score=21.19 Aligned_cols=25 Identities=28% Similarity=0.603 Sum_probs=14.2
Q ss_pred CCCCcccHhhHHHHhcCCCccccccc
Q 029544 107 QCGHSFHLACIDIWLRKKTTCPVCRL 132 (191)
Q Consensus 107 ~C~H~f~~~Ci~~wl~~~~~CP~Cr~ 132 (191)
.|||.|-...-..= .....||.|..
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 58887754431111 23445999987
No 271
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=33.14 E-value=69 Score=23.75 Aligned_cols=30 Identities=17% Similarity=0.464 Sum_probs=14.3
Q ss_pred CCCCchhHH-HHHHHHHHHHHHHHHHHHHHH
Q 029544 1 MWGSGMNLI-TTVIGFGMSAAFIVFICTRII 30 (191)
Q Consensus 1 ~~g~~~~~v-~~~i~~~~~~~li~~~~~~~~ 30 (191)
|||....++ ..++.|++.++++.+++++-+
T Consensus 14 ~~~~~~~~~~~~iinflIl~~lL~~fl~kpI 44 (174)
T PRK07352 14 GFGLNLNLLETNLINLAIVIGLLYYFGRGFL 44 (174)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 345544433 345555555555555444443
No 272
>COG2738 Predicted Zn-dependent protease [General function prediction only]
Probab=33.04 E-value=68 Score=24.75 Aligned_cols=29 Identities=10% Similarity=0.320 Sum_probs=21.3
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 029544 1 MWGSGMNLITTVIGFGMSAAFIVFICTRI 29 (191)
Q Consensus 1 ~~g~~~~~v~~~i~~~~~~~li~~~~~~~ 29 (191)
++|+++.++++++++++.+.-++.+-+-+
T Consensus 124 ~~gSn~a~~l~i~Gil~~~~~ll~lGiiL 152 (226)
T COG2738 124 NFGSNLAPLLFILGILLGSTGLLWLGIIL 152 (226)
T ss_pred ccccchhHHHHHHHHHHcchHHHHHHHHH
Confidence 57999999999999988776555443333
No 273
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=32.84 E-value=30 Score=24.05 Aligned_cols=46 Identities=20% Similarity=0.407 Sum_probs=26.9
Q ss_pred CCCcCcccccccccC--ccEEEcCCCCCcccHhhHHHHhcCCC--ccccccc
Q 029544 85 EDAECSICLGEYQDK--EVLRIMPQCGHSFHLACIDIWLRKKT--TCPVCRL 132 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~--~~~~~~~~C~H~f~~~Ci~~wl~~~~--~CP~Cr~ 132 (191)
++..|.+|...|.-- ... ....|.|.+|..|-.. ..... .|-+|..
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~-~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGR-VCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCE-EETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCC-cCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 456899999876422 223 3336999999999544 11112 3888864
No 274
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=32.66 E-value=48 Score=27.44 Aligned_cols=31 Identities=16% Similarity=0.207 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 029544 8 LITTVIGFGMSAAFIVFICTRIICRRIRGVE 38 (191)
Q Consensus 8 ~v~~~i~~~~~~~li~~~~~~~~~~r~~~~~ 38 (191)
++++++++.+.+++.++++..++..|+|++.
T Consensus 43 Li~~~~~~~liv~i~V~~l~~~f~~ryR~~~ 73 (315)
T PRK10525 43 LILTAFGLMLIVVIPAILMAVGFAWKYRASN 73 (315)
T ss_pred HHHHHHHHHHhhHHHHHHHHheeEEEEecCC
Confidence 3444444444444555545555566666543
No 275
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=32.59 E-value=61 Score=22.48 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 029544 6 MNLITTVIGFGMSAAFIVFICTRII 30 (191)
Q Consensus 6 ~~~v~~~i~~~~~~~li~~~~~~~~ 30 (191)
+.++..++..+++++++.|+++.++
T Consensus 62 lffvglii~LivSLaLVsFvIFLii 86 (128)
T PF15145_consen 62 LFFVGLIIVLIVSLALVSFVIFLII 86 (128)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHhee
Confidence 4455556666666666655544443
No 276
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=32.35 E-value=1.3e+02 Score=19.81 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 029544 8 LITTVIGFGMSAAFIVFICTRIICRRI 34 (191)
Q Consensus 8 ~v~~~i~~~~~~~li~~~~~~~~~~r~ 34 (191)
+.++-+++++..++++++...++.+..
T Consensus 14 lm~~GM~~VF~fL~lLi~~~~l~~~~~ 40 (85)
T PRK03814 14 LMLTGMGVVFIFLTLLVYLVQLMSKLI 40 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333334444433344444444444443
No 277
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=32.32 E-value=33 Score=27.37 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=18.0
Q ss_pred CcCcccccccccCccEEEcCCCCCcc
Q 029544 87 AECSICLGEYQDKEVLRIMPQCGHSF 112 (191)
Q Consensus 87 ~~C~IC~~~~~~~~~~~~~~~C~H~f 112 (191)
+.||+|...+.........+ .+|.|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~-~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICP-QNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcC-CCCCC
Confidence 57999999987555544454 67887
No 278
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=32.14 E-value=46 Score=22.50 Aligned_cols=34 Identities=26% Similarity=0.561 Sum_probs=22.0
Q ss_pred CCCcCcccccccccCccEE-EcCCCCCcccHhhHHHH
Q 029544 85 EDAECSICLGEYQDKEVLR-IMPQCGHSFHLACIDIW 120 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~-~~~~C~H~f~~~Ci~~w 120 (191)
....|.||... .+..+. .-+.|...||..|....
T Consensus 54 ~~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 54 FKLKCSICGKS--GGACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred cCCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHHC
Confidence 45679999987 332331 11137789999998653
No 279
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.94 E-value=21 Score=23.80 Aligned_cols=12 Identities=33% Similarity=0.958 Sum_probs=10.8
Q ss_pred cccHhhHHHHhc
Q 029544 111 SFHLACIDIWLR 122 (191)
Q Consensus 111 ~f~~~Ci~~wl~ 122 (191)
.||..|+..|+.
T Consensus 42 gFCRNCLs~Wy~ 53 (104)
T COG3492 42 GFCRNCLSNWYR 53 (104)
T ss_pred HHHHHHHHHHHH
Confidence 499999999986
No 280
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=31.90 E-value=1e+02 Score=29.90 Aligned_cols=54 Identities=17% Similarity=0.387 Sum_probs=34.8
Q ss_pred CCCcCccccccccc---CccEEEcCCCCCcccHhhHHHHhc-CCCccccccccccCCC
Q 029544 85 EDAECSICLGEYQD---KEVLRIMPQCGHSFHLACIDIWLR-KKTTCPVCRLPLQDPL 138 (191)
Q Consensus 85 ~~~~C~IC~~~~~~---~~~~~~~~~C~H~f~~~Ci~~wl~-~~~~CP~Cr~~~~~~~ 138 (191)
....|-||-++... ++.-...-.|+--.|..|.+-=.+ .+..||.|+..+...+
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~ 71 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHK 71 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhc
Confidence 34569999998653 333332224666689999843222 5567999999887433
No 281
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=31.79 E-value=1.5e+02 Score=19.42 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029544 6 MNLITTVIGFGMSAAFIVFICTRIICRR 33 (191)
Q Consensus 6 ~~~v~~~i~~~~~~~li~~~~~~~~~~r 33 (191)
..+.++++.+++.+++.++++++.++.-
T Consensus 26 ~R~~vvl~ml~~fa~l~ly~~~~ai~~~ 53 (85)
T PF13150_consen 26 QRLRVVLVMLVLFAALCLYMTVSAIYDI 53 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666777777778888878877654
No 282
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=31.63 E-value=1.1e+02 Score=17.77 Aligned_cols=15 Identities=27% Similarity=0.432 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHhhcc
Q 029544 21 FIVFICTRIICRRIR 35 (191)
Q Consensus 21 li~~~~~~~~~~r~~ 35 (191)
.-.|.-...+|+.+|
T Consensus 16 ~gy~~hmkrycrafr 30 (54)
T PF13260_consen 16 VGYFCHMKRYCRAFR 30 (54)
T ss_pred HHHHHHHHHHHHHHh
Confidence 344445555565554
No 283
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=31.53 E-value=40 Score=27.85 Aligned_cols=43 Identities=5% Similarity=-0.224 Sum_probs=29.3
Q ss_pred CCcCcccccccccCccEEEcCCCCC-cccHhhHHHHhcCCCccccccccc
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGH-SFHLACIDIWLRKKTTCPVCRLPL 134 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H-~f~~~Ci~~wl~~~~~CP~Cr~~~ 134 (191)
..+|..|-+.+....-. +|+| .||-+|.. +.-..+||+|....
T Consensus 343 ~~~~~~~~~~~~st~~~----~~~~n~~~~~~a~--~s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 343 SLKGTSAGFGLLSTIWS----GGNMNLSPGSLAS--ASASPTSSTCDHND 386 (394)
T ss_pred hcccccccCceeeeEee----cCCcccChhhhhh--cccCCccccccccc
Confidence 34577777655443333 5999 58999976 45567799997654
No 284
>PF14851 FAM176: FAM176 family
Probab=31.47 E-value=73 Score=23.45 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHH
Q 029544 9 ITTVIGFGMSAAFIVFIC-TRIIC 31 (191)
Q Consensus 9 v~~~i~~~~~~~li~~~~-~~~~~ 31 (191)
++++.++.++++|.+.++ +++.|
T Consensus 24 LYFv~gVC~GLlLtLcllV~risc 47 (153)
T PF14851_consen 24 LYFVSGVCAGLLLTLCLLVIRISC 47 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhee
Confidence 344555555554444433 34434
No 285
>PHA03164 hypothetical protein; Provisional
Probab=31.38 E-value=73 Score=20.46 Aligned_cols=8 Identities=13% Similarity=0.243 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 029544 9 ITTVIGFG 16 (191)
Q Consensus 9 v~~~i~~~ 16 (191)
+++-+++.
T Consensus 62 vLtgLaIa 69 (88)
T PHA03164 62 VLTGLAIA 69 (88)
T ss_pred HHHHHHHH
Confidence 33333333
No 286
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=31.27 E-value=47 Score=30.20 Aligned_cols=28 Identities=7% Similarity=0.150 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 029544 9 ITTVIGFGMSAAFIVFICTRIICRRIRGV 37 (191)
Q Consensus 9 v~~~i~~~~~~~li~~~~~~~~~~r~~~~ 37 (191)
+++++++++.+++++++++.+ ++.++++
T Consensus 269 lWII~gVlvPv~vV~~Iiiil-~~~LCRk 296 (684)
T PF12877_consen 269 LWIIAGVLVPVLVVLLIIIIL-YWKLCRK 296 (684)
T ss_pred eEEEehHhHHHHHHHHHHHHH-HHHHhcc
Confidence 356678877766666665555 4455433
No 287
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=30.42 E-value=18 Score=31.46 Aligned_cols=48 Identities=21% Similarity=0.494 Sum_probs=30.9
Q ss_pred CCcCcccccccc-cCccEEEcCCCCCcccHhhHHHHhcC--------CCcccccccc
Q 029544 86 DAECSICLGEYQ-DKEVLRIMPQCGHSFHLACIDIWLRK--------KTTCPVCRLP 133 (191)
Q Consensus 86 ~~~C~IC~~~~~-~~~~~~~~~~C~H~f~~~Ci~~wl~~--------~~~CP~Cr~~ 133 (191)
+..|.+|+.-.. ....+.....|+..||..|....... ...|-+|..-
T Consensus 168 n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 168 NLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred cceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence 345999996433 33344444468999999998766541 1238888753
No 288
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=30.27 E-value=1.4e+02 Score=19.87 Aligned_cols=30 Identities=13% Similarity=0.014 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 029544 7 NLITTVIGFGMSAAFIVFICTRIICRRIRG 36 (191)
Q Consensus 7 ~~v~~~i~~~~~~~li~~~~~~~~~~r~~~ 36 (191)
+-.+-+++|++++++++.+++.-.+.|+.+
T Consensus 44 wRalSii~FI~giil~lG~~i~s~ygr~C~ 73 (92)
T PF05767_consen 44 WRALSIICFILGIILTLGIVIFSMYGRYCR 73 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 345556777777777777777777766664
No 289
>PRK02919 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=30.22 E-value=67 Score=20.96 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029544 6 MNLITTVIGFGMSAAFIVFICTRIICRR 33 (191)
Q Consensus 6 ~~~v~~~i~~~~~~~li~~~~~~~~~~r 33 (191)
+.+.++-.++++..+.++++.+.++.+.
T Consensus 11 l~lMvlGMg~VfvFL~lLI~~i~~ms~l 38 (82)
T PRK02919 11 FTLMFLGMGFVLAFLFLLIFAIRGMSAL 38 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333334444433
No 290
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.17 E-value=20 Score=26.33 Aligned_cols=27 Identities=26% Similarity=0.584 Sum_probs=20.1
Q ss_pred CCCcccHhhHHHHhcCCCccccccccccCC
Q 029544 108 CGHSFHLACIDIWLRKKTTCPVCRLPLQDP 137 (191)
Q Consensus 108 C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 137 (191)
=.+.||.+|-.+-+ ..||.|..++...
T Consensus 26 ~~~~fC~kCG~~tI---~~Cp~C~~~IrG~ 52 (158)
T PF10083_consen 26 LREKFCSKCGAKTI---TSCPNCSTPIRGD 52 (158)
T ss_pred HHHHHHHHhhHHHH---HHCcCCCCCCCCc
Confidence 44679999987755 4599999888654
No 291
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=30.17 E-value=61 Score=25.41 Aligned_cols=18 Identities=17% Similarity=0.246 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHhhcccc
Q 029544 20 AFIVFICTRIICRRIRGV 37 (191)
Q Consensus 20 ~li~~~~~~~~~~r~~~~ 37 (191)
+++++.+..++..|+|++
T Consensus 43 ~v~v~~~~~~~~~r~r~~ 60 (226)
T TIGR01433 43 VIPVILMTLFFAWKYRAT 60 (226)
T ss_pred HHHHHHHHheeeEEEecc
Confidence 333333334444555544
No 292
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=30.16 E-value=37 Score=27.33 Aligned_cols=45 Identities=16% Similarity=0.267 Sum_probs=27.1
Q ss_pred CCCcCcccccccccCccEEEcCCCCC-cccHhhHHHHhc-CCCcccc
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGH-SFHLACIDIWLR-KKTTCPV 129 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H-~f~~~Ci~~wl~-~~~~CP~ 129 (191)
.-..|.||++...++..-..++.-.- .-|.+|.++|-. .+..||.
T Consensus 29 tLsfChiCfEl~iegvpks~llHtkSlRGHrdCFEK~HlIanQ~~pr 75 (285)
T PF06937_consen 29 TLSFCHICFELSIEGVPKSNLLHTKSLRGHRDCFEKYHLIANQDCPR 75 (285)
T ss_pred ceeecceeeccccccCccccccccccccchHHHHHHHHHHHcCCCCc
Confidence 34468999987665543322221111 467999999954 5666883
No 293
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=29.80 E-value=91 Score=24.58 Aligned_cols=14 Identities=14% Similarity=0.188 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 029544 9 ITTVIGFGMSAAFI 22 (191)
Q Consensus 9 v~~~i~~~~~~~li 22 (191)
+.++|++++..+++
T Consensus 191 lpvvIaliVitl~v 204 (259)
T PF07010_consen 191 LPVVIALIVITLSV 204 (259)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444433333
No 294
>PF10746 Phage_holin_6: Phage holin family 6; InterPro: IPR019682 This entry represents a protein conserved in Caudovirales (known as tailed bacteriophages). Holins are a diverse family of proteins that cause bacterial membrane lysis during late-protein synthesis.
Probab=29.54 E-value=1.5e+02 Score=18.54 Aligned_cols=29 Identities=14% Similarity=0.284 Sum_probs=12.3
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 029544 1 MWGSGMNLITTVIGFGMSAAFIVFICTRI 29 (191)
Q Consensus 1 ~~g~~~~~v~~~i~~~~~~~li~~~~~~~ 29 (191)
|||+.++=-+.+..++..++-+...+...
T Consensus 28 f~GLslneWfyiati~YtvlQig~~v~k~ 56 (66)
T PF10746_consen 28 FWGLSLNEWFYIATIAYTVLQIGYLVWKK 56 (66)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777443333333333333333333333
No 295
>PF01998 DUF131: Protein of unknown function DUF131; InterPro: IPR002849 This archaebacterial protein family has no known function. The proteins are predicted to contain two transmembrane helices.
Probab=29.45 E-value=1.2e+02 Score=18.85 Aligned_cols=9 Identities=22% Similarity=0.475 Sum_probs=4.4
Q ss_pred CCCchhHHH
Q 029544 2 WGSGMNLIT 10 (191)
Q Consensus 2 ~g~~~~~v~ 10 (191)
||++-.+..
T Consensus 38 FGs~~~~~~ 46 (64)
T PF01998_consen 38 FGSSPRIAK 46 (64)
T ss_pred EcCCHHHHH
Confidence 566634433
No 296
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=29.17 E-value=74 Score=23.82 Aligned_cols=22 Identities=5% Similarity=0.132 Sum_probs=9.1
Q ss_pred CCCCchhHHHHHHHHHHHHHHH
Q 029544 1 MWGSGMNLITTVIGFGMSAAFI 22 (191)
Q Consensus 1 ~~g~~~~~v~~~i~~~~~~~li 22 (191)
|++.....++.++.|++.++++
T Consensus 22 ~~~~~~t~~~~~inflil~~iL 43 (184)
T PRK13455 22 FFSLSNTDFVVTLAFLLFIGIL 43 (184)
T ss_pred CCCCcchHHHHHHHHHHHHHHH
Confidence 3444433344444444433333
No 297
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=29.00 E-value=1.1e+02 Score=19.86 Aligned_cols=22 Identities=14% Similarity=0.396 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 029544 8 LITTVIGFGMSAAFIVFICTRI 29 (191)
Q Consensus 8 ~v~~~i~~~~~~~li~~~~~~~ 29 (191)
.+++.++|++.+++++..+.++
T Consensus 3 ~lI~Aiaf~vLvi~l~~~l~~l 24 (90)
T PF06103_consen 3 GLIAAIAFAVLVIFLIKVLKKL 24 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554544444443
No 298
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=28.68 E-value=38 Score=20.26 Aligned_cols=10 Identities=30% Similarity=0.823 Sum_probs=6.8
Q ss_pred cccccccccc
Q 029544 126 TCPVCRLPLQ 135 (191)
Q Consensus 126 ~CP~Cr~~~~ 135 (191)
-||-|+++..
T Consensus 30 yCpKCK~Etl 39 (55)
T PF14205_consen 30 YCPKCKQETL 39 (55)
T ss_pred cCCCCCceEE
Confidence 3888887554
No 299
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=28.62 E-value=48 Score=22.35 Aligned_cols=29 Identities=24% Similarity=0.498 Sum_probs=17.2
Q ss_pred CCCcccHhhHHHHhcCCCccccccccccCC
Q 029544 108 CGHSFHLACIDIWLRKKTTCPVCRLPLQDP 137 (191)
Q Consensus 108 C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 137 (191)
||+--|..-+.++. .-..||.|+.+++..
T Consensus 65 CGvC~~~LT~~EY~-~~~~Cp~C~spFNp~ 93 (105)
T COG4357 65 CGVCRKLLTRAEYG-MCGSCPYCQSPFNPG 93 (105)
T ss_pred hhhhhhhhhHHHHh-hcCCCCCcCCCCCcc
Confidence 66544444444443 234599999988754
No 300
>PRK00182 tatB sec-independent translocase; Provisional
Probab=28.59 E-value=55 Score=24.26 Aligned_cols=9 Identities=33% Similarity=0.538 Sum_probs=5.2
Q ss_pred CCC-CchhHH
Q 029544 1 MWG-SGMNLI 9 (191)
Q Consensus 1 ~~g-~~~~~v 9 (191)
||| +|..=+
T Consensus 1 MF~~IG~~El 10 (160)
T PRK00182 1 MFSSVGWGEI 10 (160)
T ss_pred CcccccHHHH
Confidence 774 665433
No 301
>COG3190 FliO Flagellar biogenesis protein [Cell motility and secretion]
Probab=28.48 E-value=1.4e+02 Score=21.48 Aligned_cols=33 Identities=6% Similarity=0.041 Sum_probs=14.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 029544 3 GSGMNLITTVIGFGMSAAFIVFICTRIICRRIR 35 (191)
Q Consensus 3 g~~~~~v~~~i~~~~~~~li~~~~~~~~~~r~~ 35 (191)
+.++...++-+...+..++.++++..++.+|+.
T Consensus 17 ~~~~~~~~~~~~gsL~~iL~lil~~~wl~kr~~ 49 (137)
T COG3190 17 PASAALELAQMFGSLILILALILFLAWLVKRLG 49 (137)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444444444
No 302
>PRK04989 psbM photosystem II reaction center protein M; Provisional
Probab=28.42 E-value=92 Score=16.80 Aligned_cols=16 Identities=6% Similarity=0.353 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 029544 9 ITTVIGFGMSAAFIVF 24 (191)
Q Consensus 9 v~~~i~~~~~~~li~~ 24 (191)
+.+++.+.++.+|+++
T Consensus 9 iAt~Lfi~iPt~FLli 24 (35)
T PRK04989 9 VASLLFVLVPTVFLII 24 (35)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444333333
No 303
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=28.04 E-value=90 Score=28.53 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 029544 12 VIGFGMSAAFIVFICTRIICRRIRGVESR 40 (191)
Q Consensus 12 ~i~~~~~~~li~~~~~~~~~~r~~~~~~r 40 (191)
+|++++++++++.+++..+.+|+|+....
T Consensus 393 ~~~~f~~if~iva~ii~~~L~R~rr~~~k 421 (807)
T KOG1094|consen 393 LIIIFVAIFLIVALIIALMLWRWRRLLSK 421 (807)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555555555566666777665543
No 304
>PRK03100 sec-independent translocase; Provisional
Probab=27.89 E-value=56 Score=23.55 Aligned_cols=12 Identities=17% Similarity=0.357 Sum_probs=6.4
Q ss_pred CCC-CchhHHHHH
Q 029544 1 MWG-SGMNLITTV 12 (191)
Q Consensus 1 ~~g-~~~~~v~~~ 12 (191)
||| +|..-++++
T Consensus 1 Mf~~iG~~EllvI 13 (136)
T PRK03100 1 MFANIGWGEMLVL 13 (136)
T ss_pred CcccccHHHHHHH
Confidence 774 775444333
No 305
>PRK05978 hypothetical protein; Provisional
Probab=27.50 E-value=52 Score=24.08 Aligned_cols=25 Identities=20% Similarity=0.502 Sum_probs=19.0
Q ss_pred CCcccHhhHHHHhcCCCccccccccccCCC
Q 029544 109 GHSFHLACIDIWLRKKTTCPVCRLPLQDPL 138 (191)
Q Consensus 109 ~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~ 138 (191)
|+.|. .+++-+..||.|-.++....
T Consensus 42 G~LF~-----g~Lkv~~~C~~CG~~~~~~~ 66 (148)
T PRK05978 42 GKLFR-----AFLKPVDHCAACGEDFTHHR 66 (148)
T ss_pred Ccccc-----cccccCCCccccCCccccCC
Confidence 35664 67788889999998887553
No 306
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=27.35 E-value=96 Score=22.79 Aligned_cols=21 Identities=10% Similarity=0.124 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029544 8 LITTVIGFGMSAAFIVFICTR 28 (191)
Q Consensus 8 ~v~~~i~~~~~~~li~~~~~~ 28 (191)
+++.++.|++.++++..+++.
T Consensus 9 ~~~~~i~F~ill~ll~~~~~~ 29 (161)
T COG0711 9 ILWQLIAFVILLWLLKKFVWK 29 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhHH
Confidence 444444444444444444333
No 307
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=27.02 E-value=35 Score=30.56 Aligned_cols=33 Identities=27% Similarity=0.587 Sum_probs=23.3
Q ss_pred CCCCcCccccccccc-------------CccEEEcCCCCCcccHhhHHHH
Q 029544 84 VEDAECSICLGEYQD-------------KEVLRIMPQCGHSFHLACIDIW 120 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~-------------~~~~~~~~~C~H~f~~~Ci~~w 120 (191)
+....|+||.+.|+. .+.+ .-|-+||..|+..-
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~l----e~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYL----EFGRIFHSKCLSEK 556 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeee----ccCceeeccccchH
Confidence 456679999999863 2222 24889999998654
No 308
>PRK02565 photosystem II reaction center protein J; Provisional
Probab=26.67 E-value=8.3 Score=21.24 Aligned_cols=20 Identities=30% Similarity=0.498 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 029544 6 MNLITTVIGFGMSAAFIVFI 25 (191)
Q Consensus 6 ~~~v~~~i~~~~~~~li~~~ 25 (191)
+++|.++.++.+..++-+|+
T Consensus 9 LWlV~tv~G~~vi~~vgiFf 28 (39)
T PRK02565 9 LWLVATVAGMGVIFVVGLFF 28 (39)
T ss_pred eeehhhhhHHHHHhheeeEE
Confidence 56666666665544444444
No 309
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=26.42 E-value=33 Score=28.32 Aligned_cols=12 Identities=17% Similarity=0.240 Sum_probs=4.8
Q ss_pred HHHHHHHHHhhc
Q 029544 23 VFICTRIICRRI 34 (191)
Q Consensus 23 ~~~~~~~~~~r~ 34 (191)
.++.+-+.|+|.
T Consensus 213 Aliva~~cW~Rl 224 (341)
T PF06809_consen 213 ALIVAGYCWYRL 224 (341)
T ss_pred HHHHhhheEEEe
Confidence 333344434444
No 310
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=26.38 E-value=41 Score=24.23 Aligned_cols=20 Identities=25% Similarity=0.801 Sum_probs=15.4
Q ss_pred CCCCcccHhhHHHHhcCCCccccccccc
Q 029544 107 QCGHSFHLACIDIWLRKKTTCPVCRLPL 134 (191)
Q Consensus 107 ~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~ 134 (191)
+|||.|+ -.+..||.|....
T Consensus 34 ~CG~v~~--------PPr~~Cp~C~~~~ 53 (140)
T COG1545 34 KCGRVYF--------PPRAYCPKCGSET 53 (140)
T ss_pred CCCeEEc--------CCcccCCCCCCCC
Confidence 7999875 3556699999875
No 311
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=26.37 E-value=1.5e+02 Score=19.78 Aligned_cols=12 Identities=17% Similarity=0.199 Sum_probs=5.9
Q ss_pred hccccCCCCccc
Q 029544 33 RIRGVESRPMFE 44 (191)
Q Consensus 33 r~~~~~~r~~~~ 44 (191)
-++.+++|..-+
T Consensus 65 v~KAkrqrsTeE 76 (91)
T PF01708_consen 65 VLKAKRQRSTEE 76 (91)
T ss_pred eeeeccCCceee
Confidence 445555554433
No 312
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=26.29 E-value=92 Score=23.33 Aligned_cols=8 Identities=25% Similarity=0.783 Sum_probs=4.7
Q ss_pred cCcccccc
Q 029544 88 ECSICLGE 95 (191)
Q Consensus 88 ~C~IC~~~ 95 (191)
.|+.|...
T Consensus 85 wCp~C~~~ 92 (189)
T TIGR02661 85 SCPVCDKL 92 (189)
T ss_pred CChhHHHH
Confidence 47777544
No 313
>PLN02248 cellulose synthase-like protein
Probab=26.02 E-value=89 Score=30.46 Aligned_cols=31 Identities=23% Similarity=0.559 Sum_probs=26.1
Q ss_pred CCCCcccHhhHHHHhcCCCccccccccccCC
Q 029544 107 QCGHSFHLACIDIWLRKKTTCPVCRLPLQDP 137 (191)
Q Consensus 107 ~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 137 (191)
.|++..|.+|..--+.....||-|+.++...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (1135)
T PLN02248 149 ECGFKICRDCYIDAVKSGGICPGCKEPYKVT 179 (1135)
T ss_pred cccchhHHhHhhhhhhcCCCCCCCccccccc
Confidence 5788899999988888877899999988543
No 314
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=25.77 E-value=1.1e+02 Score=20.90 Aligned_cols=21 Identities=10% Similarity=-0.005 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhhccccCC
Q 029544 19 AAFIVFICTRIICRRIRGVES 39 (191)
Q Consensus 19 ~~li~~~~~~~~~~r~~~~~~ 39 (191)
+++.+++++.+.|..+++...
T Consensus 28 l~~SlLIalaaKC~~~~k~~~ 48 (102)
T PF15176_consen 28 LVTSLLIALAAKCPVWYKYLA 48 (102)
T ss_pred HHHHHHHHHHHHhHHHHHHHh
Confidence 344444444454545554444
No 315
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=25.74 E-value=44 Score=31.33 Aligned_cols=34 Identities=18% Similarity=0.386 Sum_probs=23.1
Q ss_pred CcCcccccccccCc-----cEEEcCCCCCcccHhhHHHH
Q 029544 87 AECSICLGEYQDKE-----VLRIMPQCGHSFHLACIDIW 120 (191)
Q Consensus 87 ~~C~IC~~~~~~~~-----~~~~~~~C~H~f~~~Ci~~w 120 (191)
..|..|...|..-. .....-.||.+||..|-...
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnR 499 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKR 499 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCccccCccccCCc
Confidence 46999999985321 11112279999999997654
No 316
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.60 E-value=41 Score=21.41 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=21.3
Q ss_pred CCcccHhhHHHHhcCCCccccccccccCCC
Q 029544 109 GHSFHLACIDIWLRKKTTCPVCRLPLQDPL 138 (191)
Q Consensus 109 ~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~ 138 (191)
.|.||.+|.+.-| +..||.|-..+....
T Consensus 28 EcTFCadCae~~l--~g~CPnCGGelv~RP 55 (84)
T COG3813 28 ECTFCADCAENRL--HGLCPNCGGELVARP 55 (84)
T ss_pred eeehhHhHHHHhh--cCcCCCCCchhhcCc
Confidence 4789999998754 467999988776543
No 317
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=25.31 E-value=34 Score=30.04 Aligned_cols=15 Identities=33% Similarity=0.479 Sum_probs=9.8
Q ss_pred CCcCcccccccccCc
Q 029544 86 DAECSICLGEYQDKE 100 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~ 100 (191)
..-|+-||+++....
T Consensus 26 ~~yCp~CL~~~p~~e 40 (483)
T PF05502_consen 26 SYYCPNCLFEVPSSE 40 (483)
T ss_pred eeECccccccCChhh
Confidence 445888887776544
No 318
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=25.29 E-value=10 Score=22.70 Aligned_cols=14 Identities=36% Similarity=1.113 Sum_probs=11.9
Q ss_pred CCCCcccHhhHHHH
Q 029544 107 QCGHSFHLACIDIW 120 (191)
Q Consensus 107 ~C~H~f~~~Ci~~w 120 (191)
.|++.||..|-..|
T Consensus 45 ~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 45 SCGTEFCFKCGEPW 58 (64)
T ss_dssp SCCSEECSSSTSES
T ss_pred CCCCcCccccCccc
Confidence 59999999998777
No 319
>PRK14861 tatA twin arginine translocase protein A; Provisional
Probab=25.08 E-value=88 Score=19.16 Aligned_cols=6 Identities=17% Similarity=0.086 Sum_probs=3.0
Q ss_pred CCchhH
Q 029544 3 GSGMNL 8 (191)
Q Consensus 3 g~~~~~ 8 (191)
|+|+.=
T Consensus 4 ~ig~~E 9 (61)
T PRK14861 4 NIGFPG 9 (61)
T ss_pred cCCHHH
Confidence 555543
No 320
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=24.70 E-value=15 Score=25.53 Aligned_cols=8 Identities=25% Similarity=0.447 Sum_probs=0.0
Q ss_pred HHHHHhhc
Q 029544 27 TRIICRRI 34 (191)
Q Consensus 27 ~~~~~~r~ 34 (191)
-..+|+|+
T Consensus 43 GCWYckRR 50 (118)
T PF14991_consen 43 GCWYCKRR 50 (118)
T ss_dssp --------
T ss_pred hheeeeec
Confidence 34444433
No 321
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=24.49 E-value=55 Score=21.09 Aligned_cols=34 Identities=29% Similarity=0.531 Sum_probs=22.0
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHH
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDI 119 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~ 119 (191)
....|.+|.........- ..+.|...||..|...
T Consensus 35 ~~~~C~~C~~~~Ga~i~C-~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 35 RKLKCSICKKKGGACIGC-SHPGCSRSFHVPCARK 68 (90)
T ss_pred hCCCCcCCCCCCCeEEEE-eCCCCCcEEChHHHcc
Confidence 455799999762222222 2335889999999754
No 322
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=24.43 E-value=1.9e+02 Score=19.84 Aligned_cols=17 Identities=0% Similarity=0.126 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029544 9 ITTVIGFGMSAAFIVFI 25 (191)
Q Consensus 9 v~~~i~~~~~~~li~~~ 25 (191)
+..++++.+.+.+++-+
T Consensus 3 Ll~il~llLll~l~asl 19 (107)
T PF15330_consen 3 LLGILALLLLLSLAASL 19 (107)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444433333333
No 323
>PRK14756 hypothetical protein; Provisional
Probab=24.36 E-value=1.1e+02 Score=15.54 Aligned_cols=17 Identities=35% Similarity=0.513 Sum_probs=8.7
Q ss_pred hhHHHHHHHHHHHHHHH
Q 029544 6 MNLITTVIGFGMSAAFI 22 (191)
Q Consensus 6 ~~~v~~~i~~~~~~~li 22 (191)
++++.++++..+.+++.
T Consensus 7 ~SL~tTvvaL~~Iva~~ 23 (29)
T PRK14756 7 FSLVTTIIVLGLIVAVG 23 (29)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 45555555555544433
No 324
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=23.85 E-value=1.8e+02 Score=20.57 Aligned_cols=11 Identities=9% Similarity=0.087 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 029544 8 LITTVIGFGMS 18 (191)
Q Consensus 8 ~v~~~i~~~~~ 18 (191)
+.+.++++++.
T Consensus 37 ysiL~Ls~vvl 47 (125)
T PF15048_consen 37 YSILALSFVVL 47 (125)
T ss_pred hHHHHHHHHHH
Confidence 44444444443
No 325
>PF05510 Sarcoglycan_2: Sarcoglycan alpha/epsilon; InterPro: IPR008908 Sarcoglycans are a subcomplex of transmembrane proteins which are part of the dystrophin-glycoprotein complex. They are expressed in the skeletal, cardiac and smooth muscle. Although numerous studies have been conducted on the sarcoglycan subcomplex in skeletal and cardiac muscle, the manner of the distribution and localisation of these proteins along the nonjunctional sarcolemma is not clear []. This family contains alpha and epsilon members.; GO: 0016012 sarcoglycan complex
Probab=23.84 E-value=92 Score=26.60 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 029544 11 TVIGFGMSAAFIVFICTRIICRRIRGVESR 40 (191)
Q Consensus 11 ~~i~~~~~~~li~~~~~~~~~~r~~~~~~r 40 (191)
+++.-++.++++++++..++|+++.....|
T Consensus 288 tl~iPl~i~llL~llLs~Imc~rREG~~~r 317 (386)
T PF05510_consen 288 TLAIPLIIALLLLLLLSYIMCCRREGVKKR 317 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHheechHHhhcc
Confidence 333333334455555566667666544443
No 326
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=23.74 E-value=61 Score=20.09 Aligned_cols=11 Identities=18% Similarity=0.135 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 029544 21 FIVFICTRIIC 31 (191)
Q Consensus 21 li~~~~~~~~~ 31 (191)
|++.-++.+++
T Consensus 27 flvGnyvlY~Y 37 (69)
T PF04689_consen 27 FLVGNYVLYVY 37 (69)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 327
>TIGR03038 PS_II_psbM photosystem II reaction center protein PsbM. Members of this protein family are the photosystem II reaction center M protein, product of the psbM gene, in Cyanobacteria and their derived organelles in plants. This model resembles Pfam model pfam05151 but has cutoffs set to avoid false-positive matches to similar (not necessarily homologous) sequences in species that are not photosynthetic.
Probab=23.73 E-value=1.3e+02 Score=16.00 Aligned_cols=16 Identities=19% Similarity=0.384 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 029544 9 ITTVIGFGMSAAFIVF 24 (191)
Q Consensus 9 v~~~i~~~~~~~li~~ 24 (191)
+.+.+.+.+..+++++
T Consensus 9 iAt~Lfi~iPt~FLii 24 (33)
T TIGR03038 9 IATLLFILVPTVFLLI 24 (33)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 328
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=23.69 E-value=34 Score=16.99 Aligned_cols=9 Identities=44% Similarity=1.106 Sum_probs=7.0
Q ss_pred ccccccccc
Q 029544 126 TCPVCRLPL 134 (191)
Q Consensus 126 ~CP~Cr~~~ 134 (191)
.||+|.+.+
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 589997766
No 329
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=23.53 E-value=18 Score=17.88 Aligned_cols=6 Identities=50% Similarity=1.453 Sum_probs=2.9
Q ss_pred cccccc
Q 029544 127 CPVCRL 132 (191)
Q Consensus 127 CP~Cr~ 132 (191)
||.|-.
T Consensus 19 C~~CG~ 24 (26)
T PF13248_consen 19 CPNCGA 24 (26)
T ss_pred ChhhCC
Confidence 555543
No 330
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=23.19 E-value=69 Score=21.34 Aligned_cols=40 Identities=28% Similarity=0.625 Sum_probs=28.7
Q ss_pred CCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCCC
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDPL 138 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~ 138 (191)
...|-||-.... +=+|.||..|. .....|.+|-..+....
T Consensus 44 ~~~C~~CK~~v~---------q~g~~YCq~CA----YkkGiCamCGKki~dtk 83 (90)
T PF10235_consen 44 SSKCKICKTKVH---------QPGAKYCQTCA----YKKGICAMCGKKILDTK 83 (90)
T ss_pred Cccccccccccc---------cCCCccChhhh----cccCcccccCCeecccc
Confidence 456999987644 35778999995 24567999998886543
No 331
>COG5416 Uncharacterized integral membrane protein [Function unknown]
Probab=23.16 E-value=1e+02 Score=20.82 Aligned_cols=20 Identities=25% Similarity=0.526 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 029544 6 MNLITTVIGFGMSAAFIVFI 25 (191)
Q Consensus 6 ~~~v~~~i~~~~~~~li~~~ 25 (191)
..+++++++.++...++.++
T Consensus 59 ~PLilvil~s~v~G~Li~~~ 78 (98)
T COG5416 59 LPLILVILGAAVVGALIAMF 78 (98)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 44666666665555555443
No 332
>PF05151 PsbM: Photosystem II reaction centre M protein (PsbM); InterPro: IPR007826 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbM found in PSII. PsbM is one of the most hydrophobic proteins in the thylakoid membrane. The function of this protein is unknown.; GO: 0015979 photosynthesis, 0019684 photosynthesis, light reaction, 0009523 photosystem II, 0016021 integral to membrane; PDB: 3A0H_m 3ARC_m 3A0B_M 3PRR_M 3PRQ_M 1S5L_M 4FBY_e 3BZ2_M 3BZ1_M 2AXT_M ....
Probab=22.86 E-value=1.3e+02 Score=15.75 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 029544 8 LITTVIGFGMSAAFIVFICT 27 (191)
Q Consensus 8 ~v~~~i~~~~~~~li~~~~~ 27 (191)
.+.+.+.+.+..++++++++
T Consensus 8 fiAtaLfi~iPt~FLiilyv 27 (31)
T PF05151_consen 8 FIATALFILIPTAFLIILYV 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhheEe
Confidence 44455555555555554433
No 333
>PRK11827 hypothetical protein; Provisional
Probab=22.59 E-value=25 Score=21.55 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=12.8
Q ss_pred HHhcCCCccccccccccCC
Q 029544 119 IWLRKKTTCPVCRLPLQDP 137 (191)
Q Consensus 119 ~wl~~~~~CP~Cr~~~~~~ 137 (191)
+++..--.||.|+.++...
T Consensus 3 ~~LLeILaCP~ckg~L~~~ 21 (60)
T PRK11827 3 HRLLEIIACPVCNGKLWYN 21 (60)
T ss_pred hHHHhheECCCCCCcCeEc
Confidence 3444555699999887643
No 334
>COG1766 fliF Flagellar basal body M-ring protein [Cell motility and secretion]
Probab=22.48 E-value=1.5e+02 Score=26.58 Aligned_cols=31 Identities=16% Similarity=0.217 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 029544 9 ITTVIGFGMSAAFIVFICTRIICRRIRGVES 39 (191)
Q Consensus 9 v~~~i~~~~~~~li~~~~~~~~~~r~~~~~~ 39 (191)
.+..+++.+.++++++++++-+.++++++..
T Consensus 444 ~~~~~~~~l~~~lv~~~~~r~~i~~~~~~~~ 474 (545)
T COG1766 444 SLIPVALYLVVFLVLFIIVRPVIRPRRRRGA 474 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3444555555566666666666666665554
No 335
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=22.41 E-value=43 Score=18.11 Aligned_cols=28 Identities=25% Similarity=0.605 Sum_probs=15.6
Q ss_pred CCCCCcccHhhHHHHhcCCCcccccccccc
Q 029544 106 PQCGHSFHLACIDIWLRKKTTCPVCRLPLQ 135 (191)
Q Consensus 106 ~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~ 135 (191)
+.||++||..---+ .....|..|...+.
T Consensus 5 ~~Cg~~Yh~~~~pP--~~~~~Cd~cg~~L~ 32 (36)
T PF05191_consen 5 PKCGRIYHIEFNPP--KVEGVCDNCGGELV 32 (36)
T ss_dssp TTTTEEEETTTB----SSTTBCTTTTEBEB
T ss_pred CCCCCccccccCCC--CCCCccCCCCCeeE
Confidence 36888888543221 23345777776553
No 336
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=22.27 E-value=31 Score=34.48 Aligned_cols=50 Identities=32% Similarity=0.619 Sum_probs=37.0
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcC----CCccccccccc
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK----KTTCPVCRLPL 134 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~----~~~CP~Cr~~~ 134 (191)
.....|.+|.........+... .|.-.||..|++.-+.. .-.||-|+..-
T Consensus 1106 ~~~~~c~~cr~k~~~~~m~lc~-~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKKQDEKMLLCD-ECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred cchhhhhhhhhcccchhhhhhH-hhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 4456799999988775555333 48888999999988763 33599999765
No 337
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=22.15 E-value=1.6e+02 Score=20.09 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029544 11 TVIGFGMSAAFIVFICTRIIC 31 (191)
Q Consensus 11 ~~i~~~~~~~li~~~~~~~~~ 31 (191)
+++++.+++++++.+.+.+++
T Consensus 70 L~~~~ti~lv~~~~~~I~lL~ 90 (103)
T PF12955_consen 70 LFAGFTIALVVLVAGAIGLLF 90 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444
No 338
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=22.08 E-value=35 Score=31.36 Aligned_cols=31 Identities=29% Similarity=0.674 Sum_probs=21.3
Q ss_pred cCCCCCcccHhhHHHHhcCCCcccccccccc
Q 029544 105 MPQCGHSFHLACIDIWLRKKTTCPVCRLPLQ 135 (191)
Q Consensus 105 ~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~ 135 (191)
.|.|...||.+=.+--..++..||.||.+..
T Consensus 1047 Cp~C~~~F~~eDFEl~vLqKGHCPFCrTS~d 1077 (1081)
T KOG1538|consen 1047 CPSCFQMFHSEDFELLVLQKGHCPFCRTSKD 1077 (1081)
T ss_pred CchHHhhhccchhhHHHHhcCCCCccccccc
Confidence 4456666776665555557778999997654
No 339
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=21.96 E-value=78 Score=28.37 Aligned_cols=9 Identities=22% Similarity=0.287 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 029544 9 ITTVIGFGM 17 (191)
Q Consensus 9 v~~~i~~~~ 17 (191)
+++++++++
T Consensus 3 ~~~ii~i~i 11 (569)
T PRK04778 3 IYLIIAIVV 11 (569)
T ss_pred hhHHHHHHH
Confidence 344444444
No 340
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=21.92 E-value=1.3e+02 Score=15.15 Aligned_cols=10 Identities=0% Similarity=0.507 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 029544 16 GMSAAFIVFI 25 (191)
Q Consensus 16 ~~~~~li~~~ 25 (191)
++++.+.+++
T Consensus 5 ~l~~~L~~YL 14 (26)
T TIGR02115 5 VLAVGLFIYL 14 (26)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 341
>TIGR03715 KxYKxGKxW KxYKxGKxW signal peptide. This model describes a novel form of signal peptide that occurs as an N-terminal domain with a recognizable motif, reminiscent of the YSIRK and PEP-CTERM forms of signal peptide. This domain tends to occur on long, low-complexity (usually Serine-rich and heavily glycosylated) proteins of the Firmicutes, and (as with YSIRK) the majority of these proteins have the LPXTG cell wall-anchoring motif at the C-terminus.
Probab=21.80 E-value=1e+02 Score=15.54 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=10.3
Q ss_pred CCCCchhHHHHHHHHHH
Q 029544 1 MWGSGMNLITTVIGFGM 17 (191)
Q Consensus 1 ~~g~~~~~v~~~i~~~~ 17 (191)
|+=+|..++++.+.++.
T Consensus 6 myKsGK~Wv~a~~~~~~ 22 (29)
T TIGR03715 6 MYKSGKQWVFAAITTLA 22 (29)
T ss_pred EEecccHHHHHHHHHHH
Confidence 44567777777665443
No 342
>KOG4021 consensus Mitochondrial ribosomal protein S18b [Translation, ribosomal structure and biogenesis]
Probab=21.79 E-value=47 Score=25.48 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=15.0
Q ss_pred HhhHHHHhc-CCCcccccccccc
Q 029544 114 LACIDIWLR-KKTTCPVCRLPLQ 135 (191)
Q Consensus 114 ~~Ci~~wl~-~~~~CP~Cr~~~~ 135 (191)
..||++--. ..+-||+||....
T Consensus 97 ktCIrkn~~~~gnpCPICRDeyL 119 (239)
T KOG4021|consen 97 KTCIRKNGRFLGNPCPICRDEYL 119 (239)
T ss_pred hHHHhhcCeecCCCCCccccceE
Confidence 567776533 4456999998665
No 343
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.68 E-value=41 Score=30.54 Aligned_cols=45 Identities=22% Similarity=0.424 Sum_probs=31.1
Q ss_pred CcCcccccccccCccEEEcCCCCCcccHhhHHHHhc--------CCCcccccc
Q 029544 87 AECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR--------KKTTCPVCR 131 (191)
Q Consensus 87 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~--------~~~~CP~Cr 131 (191)
..|-.|...|..-..-...-.||-+||..|...-+. .-+.|-.|-
T Consensus 166 ~~C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~~lP~~Gi~~~VRVCd~C~ 218 (634)
T KOG1818|consen 166 EECLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSLTLPKLGIEKPVRVCDSCY 218 (634)
T ss_pred cccceeeeeeeeccccccccccchhhccCccccccCcccccccccceehhhhH
Confidence 679999988875443322227999999999876654 234587783
No 344
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=21.64 E-value=39 Score=17.10 Aligned_cols=12 Identities=50% Similarity=0.958 Sum_probs=5.7
Q ss_pred ccccccccccCC
Q 029544 126 TCPVCRLPLQDP 137 (191)
Q Consensus 126 ~CP~Cr~~~~~~ 137 (191)
.||.|...+...
T Consensus 1 ~CP~C~s~l~~~ 12 (28)
T PF03119_consen 1 TCPVCGSKLVRE 12 (28)
T ss_dssp B-TTT--BEEE-
T ss_pred CcCCCCCEeEcC
Confidence 488888877643
No 345
>PRK01343 zinc-binding protein; Provisional
Probab=21.40 E-value=50 Score=19.99 Aligned_cols=12 Identities=33% Similarity=0.863 Sum_probs=9.3
Q ss_pred CCcccccccccc
Q 029544 124 KTTCPVCRLPLQ 135 (191)
Q Consensus 124 ~~~CP~Cr~~~~ 135 (191)
...||+|++++.
T Consensus 9 ~~~CP~C~k~~~ 20 (57)
T PRK01343 9 TRPCPECGKPST 20 (57)
T ss_pred CCcCCCCCCcCc
Confidence 456999998764
No 346
>PF02158 Neuregulin: Neuregulin family; InterPro: IPR002154 Neuregulins are a sub-family of EGF-like molecules that have been shown to play multiple essential roles in vertebrate embryogenesis including: cardiac development, Schwann cell and oligodendrocyte differentiation, some aspects of neuronal development, as well as the formation of neuromuscular synapses [, ]. Included in the family are heregulin; neu differentiation factor; acetylcholine receptor synthesis stimulator; glial growth factor; and sensory and motor-neuron derived factor []. Multiple family members are generated by alternate splicing or by use of several cell type-specific transcription initiation sites. In general, they bind to and activate the erbB family of receptor tyrosine kinases (erbB2 (HER2), erbB3 (HER3), and erbB4 (HER4)), functioning both as heterodimers and homodimers. The transmembrane forms of neuregulin 1 (NRG1) are present within synaptic vesicles, including those containing glutamate []. After exocytosis, NRG1 is in the presynaptic membrane, where the ectodomain of NRG1 may be cleaved off. The ectodomain then migrates across the synaptic cleft and binds to and activates a member of the EGF-receptor family on the postsynaptic membrane. This has been shown to increase the expression of certain glutamate-receptor subunits. NRG1 appears to signal for glutamate-receptor subunit expression, localisation, and /or phosphorylation facilitating subsequent glutamate transmission. The NRG1 gene has been identified as a potential gene determining susceptibility to schizophrenia by a combination of genetic linkage and association approaches []. ; GO: 0005102 receptor binding, 0009790 embryo development; PDB: 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=21.31 E-value=31 Score=29.20 Aligned_cols=24 Identities=17% Similarity=0.541 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHh
Q 029544 9 ITTVIGFGMSAAFIVFICTR-IICR 32 (191)
Q Consensus 9 v~~~i~~~~~~~li~~~~~~-~~~~ 32 (191)
|+.|.+|+|+++++=++++. +||+
T Consensus 9 VLTITgIcvaLlVVGi~Cvv~aYCK 33 (404)
T PF02158_consen 9 VLTITGICVALLVVGIVCVVDAYCK 33 (404)
T ss_dssp -------------------------
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 55666777766666666666 6664
No 347
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=20.95 E-value=1.5e+02 Score=21.55 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 029544 7 NLITTVIGFGMSAAFIVFICTRIIC 31 (191)
Q Consensus 7 ~~v~~~i~~~~~~~li~~~~~~~~~ 31 (191)
.+++.++.|++.++++-.+++.-+.
T Consensus 24 t~~~~~inFliL~~lL~k~l~~Pi~ 48 (156)
T CHL00118 24 TLPLMALQFLLLMVLLNIILYKPLL 48 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555444444443
No 348
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=20.86 E-value=1.7e+02 Score=17.48 Aligned_cols=20 Identities=5% Similarity=-0.082 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 029544 10 TTVIGFGMSAAFIVFICTRI 29 (191)
Q Consensus 10 ~~~i~~~~~~~li~~~~~~~ 29 (191)
++++.+++++++-=++.+++
T Consensus 6 wlIIviVlgvIigNia~LK~ 25 (55)
T PF11446_consen 6 WLIIVIVLGVIIGNIAALKY 25 (55)
T ss_pred hHHHHHHHHHHHhHHHHHHH
Confidence 33334444433434444444
No 349
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=20.80 E-value=1.9e+02 Score=27.17 Aligned_cols=34 Identities=18% Similarity=0.137 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 029544 8 LITTVIGFGMSAAFIVFICTRIICRRIRGVESRP 41 (191)
Q Consensus 8 ~v~~~i~~~~~~~li~~~~~~~~~~r~~~~~~r~ 41 (191)
..+++++|.-++++++++++.++.+..|++-.++
T Consensus 271 HT~fLl~ILG~~~livl~lL~vLl~yCrrkc~~~ 304 (807)
T PF10577_consen 271 HTVFLLAILGGTALIVLILLCVLLCYCRRKCLKP 304 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc
Confidence 3455566666667777777777777666666543
No 350
>PF05776 Papilloma_E5A: Papillomavirus E5A protein; InterPro: IPR008736 Human papillomaviruses (HPVs) are epitheliotropic viruses, and their life cycle is intimately linked to the stratification and differentiation state of the host epithelial tissues. The kinetics of E5a protein expression during the complete viral life cycle has been studied and the highest level was found to be coincidental with the onset of virion morphogenesis [].
Probab=20.73 E-value=2.5e+02 Score=18.17 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 029544 7 NLITTVIGFGMSAAFIVFI 25 (191)
Q Consensus 7 ~~v~~~i~~~~~~~li~~~ 25 (191)
.+++++...++++++++++
T Consensus 19 P~vIA~~VC~vSIilii~i 37 (91)
T PF05776_consen 19 PVVIALTVCFVSIILIIFI 37 (91)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544
No 351
>PF14353 CpXC: CpXC protein
Probab=20.71 E-value=94 Score=21.65 Aligned_cols=12 Identities=33% Similarity=0.719 Sum_probs=8.9
Q ss_pred CccccccccccC
Q 029544 125 TTCPVCRLPLQD 136 (191)
Q Consensus 125 ~~CP~Cr~~~~~ 136 (191)
.+||.|.+.+..
T Consensus 39 ~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 39 FTCPSCGHKFRL 50 (128)
T ss_pred EECCCCCCceec
Confidence 459999987753
No 352
>PF15234 LAT: Linker for activation of T-cells
Probab=20.58 E-value=1.6e+02 Score=22.44 Aligned_cols=26 Identities=19% Similarity=0.361 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029544 8 LITTVIGFGMSAAFIVFICTRIICRR 33 (191)
Q Consensus 8 ~v~~~i~~~~~~~li~~~~~~~~~~r 33 (191)
++-.+++..+..++.+++++.+++||
T Consensus 6 l~p~~LgLLlLplla~LlmALCvrCR 31 (230)
T PF15234_consen 6 LVPSVLGLLLLPLLAVLLMALCVRCR 31 (230)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455565555555554444444443
No 353
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=20.58 E-value=32 Score=18.54 Aligned_cols=11 Identities=36% Similarity=0.770 Sum_probs=7.4
Q ss_pred CCccccccccc
Q 029544 124 KTTCPVCRLPL 134 (191)
Q Consensus 124 ~~~CP~Cr~~~ 134 (191)
...||.|...+
T Consensus 26 ~~~CP~Cg~~~ 36 (41)
T smart00834 26 LATCPECGGDV 36 (41)
T ss_pred CCCCCCCCCcc
Confidence 34599998743
No 354
>COG3115 ZipA Cell division protein [Cell division and chromosome partitioning]
Probab=20.12 E-value=1.7e+02 Score=24.10 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=8.7
Q ss_pred chhHHHHHHHHHHHHHHH
Q 029544 5 GMNLITTVIGFGMSAAFI 22 (191)
Q Consensus 5 ~~~~v~~~i~~~~~~~li 22 (191)
+++.+++|+|++..+.|+
T Consensus 3 dLr~ILIIvG~IAIiaLL 20 (324)
T COG3115 3 DLRLILIIVGAIAIIALL 20 (324)
T ss_pred chhhHHHHHHHHHHHHHH
Confidence 345555555555443333
No 355
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.10 E-value=48 Score=23.51 Aligned_cols=25 Identities=24% Similarity=0.686 Sum_probs=16.9
Q ss_pred cccHhhHHHHhcCCCccccccccccCCC
Q 029544 111 SFHLACIDIWLRKKTTCPVCRLPLQDPL 138 (191)
Q Consensus 111 ~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~ 138 (191)
.||.+|-..-+ ..||.|..++....
T Consensus 29 afcskcgeati---~qcp~csasirgd~ 53 (160)
T COG4306 29 AFCSKCGEATI---TQCPICSASIRGDY 53 (160)
T ss_pred HHHhhhchHHH---hcCCccCCcccccc
Confidence 48888866543 34999988776543
No 356
>PLN02195 cellulose synthase A
Probab=20.07 E-value=1.3e+02 Score=28.92 Aligned_cols=52 Identities=19% Similarity=0.414 Sum_probs=34.1
Q ss_pred CCCcCccccccccc---CccEEEcCCCCCcccHhhHHHHh-cCCCccccccccccC
Q 029544 85 EDAECSICLGEYQD---KEVLRIMPQCGHSFHLACIDIWL-RKKTTCPVCRLPLQD 136 (191)
Q Consensus 85 ~~~~C~IC~~~~~~---~~~~~~~~~C~H~f~~~Ci~~wl-~~~~~CP~Cr~~~~~ 136 (191)
....|.||-+.... ++.-...-.|+---|..|.+-=- ..+..||.|+..+.+
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk~ 60 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYDA 60 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCcccc
Confidence 34579999997653 23333222577778999984322 256679999998873
No 357
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=20.02 E-value=37 Score=20.13 Aligned_cols=10 Identities=40% Similarity=1.215 Sum_probs=4.5
Q ss_pred cccccccccc
Q 029544 126 TCPVCRLPLQ 135 (191)
Q Consensus 126 ~CP~Cr~~~~ 135 (191)
+||+|...+.
T Consensus 26 tCP~C~a~~~ 35 (54)
T PF09237_consen 26 TCPICGAVIR 35 (54)
T ss_dssp E-TTT--EES
T ss_pred CCCcchhhcc
Confidence 4788876654
Done!