Query 029544
Match_columns 191
No_of_seqs 216 out of 2385
Neff 8.9
Searched_HMMs 29240
Date Tue Mar 26 00:10:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029544.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029544hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 1.5E-17 5E-22 111.5 7.9 80 56-136 10-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 1E-16 3.5E-21 103.4 2.6 68 68-137 6-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.6 3E-15 1E-19 90.5 4.3 52 84-135 3-54 (55)
4 2ep4_A Ring finger protein 24; 99.6 5.1E-15 1.7E-19 95.1 5.5 55 83-138 12-66 (74)
5 2ect_A Ring finger protein 126 99.5 6.4E-15 2.2E-19 95.5 5.3 55 83-138 12-66 (78)
6 2kiz_A E3 ubiquitin-protein li 99.5 9.3E-15 3.2E-19 92.5 5.5 55 83-138 11-65 (69)
7 1v87_A Deltex protein 2; ring- 99.5 1.6E-14 5.3E-19 100.4 6.8 64 85-149 24-107 (114)
8 2ecl_A Ring-box protein 2; RNF 99.5 2.2E-14 7.4E-19 93.8 4.2 52 85-136 14-76 (81)
9 2ecm_A Ring finger and CHY zin 99.4 4.7E-14 1.6E-18 85.2 3.7 51 84-135 3-54 (55)
10 3ng2_A RNF4, snurf, ring finge 99.4 7.4E-14 2.5E-18 88.7 3.6 53 84-137 8-64 (71)
11 2d8t_A Dactylidin, ring finger 99.4 1.3E-13 4.6E-18 87.7 3.5 49 84-136 13-61 (71)
12 2ea6_A Ring finger protein 4; 99.4 8.8E-14 3E-18 87.8 2.5 53 83-136 12-68 (69)
13 2djb_A Polycomb group ring fin 99.4 2.1E-13 7.2E-18 87.0 3.9 53 83-138 12-64 (72)
14 3dpl_R Ring-box protein 1; ubi 99.4 3.3E-13 1.1E-17 92.5 4.9 51 84-135 35-100 (106)
15 2xeu_A Ring finger protein 4; 99.4 2E-13 6.8E-18 84.8 2.6 52 85-137 2-57 (64)
16 2d8s_A Cellular modulator of i 99.4 6E-13 2E-17 86.6 4.8 55 82-138 11-72 (80)
17 2ecn_A Ring finger protein 141 99.4 4.1E-13 1.4E-17 85.1 3.8 50 84-138 13-62 (70)
18 2ecy_A TNF receptor-associated 99.3 8.2E-13 2.8E-17 82.8 4.7 50 84-137 13-63 (66)
19 2ysl_A Tripartite motif-contai 99.3 8.7E-13 3E-17 84.2 4.7 51 83-137 17-70 (73)
20 2csy_A Zinc finger protein 183 99.3 4.8E-13 1.6E-17 87.2 3.5 49 83-135 12-60 (81)
21 2yur_A Retinoblastoma-binding 99.3 4.5E-13 1.5E-17 86.0 3.3 50 83-136 12-64 (74)
22 4ayc_A E3 ubiquitin-protein li 99.3 5.8E-13 2E-17 95.6 3.2 48 85-136 52-99 (138)
23 1chc_A Equine herpes virus-1 r 99.3 7.1E-13 2.4E-17 83.5 2.7 49 85-136 4-52 (68)
24 2ct2_A Tripartite motif protei 99.3 3.9E-12 1.3E-16 84.0 6.1 54 83-137 12-69 (88)
25 1t1h_A Gspef-atpub14, armadill 99.3 1.7E-12 5.7E-17 84.0 4.2 50 84-137 6-56 (78)
26 2egp_A Tripartite motif-contai 99.3 1.5E-12 5E-17 84.4 2.3 50 83-136 9-65 (79)
27 2ysj_A Tripartite motif-contai 99.3 4.4E-12 1.5E-16 78.6 4.3 45 82-130 16-63 (63)
28 4a0k_B E3 ubiquitin-protein li 99.3 6.8E-13 2.3E-17 92.2 0.6 52 84-135 46-111 (117)
29 1g25_A CDK-activating kinase a 99.2 5.1E-12 1.7E-16 78.8 4.3 52 86-137 3-56 (65)
30 3lrq_A E3 ubiquitin-protein li 99.2 1.8E-12 6.1E-17 88.0 2.3 50 84-136 20-70 (100)
31 2ecw_A Tripartite motif-contai 99.2 4.4E-12 1.5E-16 83.0 4.1 51 83-137 16-72 (85)
32 2ecv_A Tripartite motif-contai 99.2 6.9E-12 2.4E-16 82.1 4.8 50 83-136 16-71 (85)
33 3ztg_A E3 ubiquitin-protein li 99.2 4.5E-12 1.5E-16 84.5 3.7 50 82-135 9-61 (92)
34 2ecj_A Tripartite motif-contai 99.2 8.8E-12 3E-16 75.8 4.3 43 84-130 13-58 (58)
35 4ap4_A E3 ubiquitin ligase RNF 99.2 7.7E-12 2.6E-16 88.6 3.5 54 84-138 5-62 (133)
36 2ct0_A Non-SMC element 1 homol 99.2 1.9E-11 6.5E-16 78.0 4.8 50 85-137 14-65 (74)
37 2ckl_A Polycomb group ring fin 99.2 7.8E-12 2.7E-16 85.9 3.0 51 84-137 13-63 (108)
38 3fl2_A E3 ubiquitin-protein li 99.2 8.8E-12 3E-16 87.7 3.2 48 85-136 51-99 (124)
39 2y43_A E3 ubiquitin-protein li 99.2 8.6E-12 2.9E-16 84.3 2.9 49 85-136 21-69 (99)
40 3l11_A E3 ubiquitin-protein li 99.1 5.8E-12 2E-16 87.5 0.1 49 84-136 13-62 (115)
41 1jm7_A BRCA1, breast cancer ty 99.1 3E-11 1E-15 83.2 3.7 49 85-137 20-71 (112)
42 1e4u_A Transcriptional repress 99.1 1.2E-10 4.1E-15 75.3 6.2 55 83-138 8-64 (78)
43 1z6u_A NP95-like ring finger p 99.1 3.4E-11 1.2E-15 87.5 3.3 49 85-137 77-126 (150)
44 2kre_A Ubiquitin conjugation f 99.1 6.2E-11 2.1E-15 80.3 4.4 50 84-137 27-76 (100)
45 2kr4_A Ubiquitin conjugation f 99.1 4.3E-11 1.5E-15 78.7 3.4 49 84-136 12-60 (85)
46 3hct_A TNF receptor-associated 99.1 2.2E-11 7.4E-16 85.0 2.0 51 83-137 15-66 (118)
47 1wgm_A Ubiquitin conjugation f 99.1 8.8E-11 3E-15 79.3 4.5 50 84-137 20-70 (98)
48 3knv_A TNF receptor-associated 99.1 4.8E-11 1.6E-15 85.9 2.8 51 82-136 27-78 (141)
49 2ckl_B Ubiquitin ligase protei 99.1 5.4E-11 1.9E-15 87.7 3.1 49 85-136 53-102 (165)
50 1bor_A Transcription factor PM 99.1 5.7E-11 1.9E-15 71.9 2.6 48 84-138 4-51 (56)
51 4ap4_A E3 ubiquitin ligase RNF 99.1 4.1E-11 1.4E-15 84.7 2.1 53 84-137 70-126 (133)
52 1rmd_A RAG1; V(D)J recombinati 99.0 7E-11 2.4E-15 82.1 2.5 49 85-137 22-71 (116)
53 2y1n_A E3 ubiquitin-protein li 99.0 3.3E-10 1.1E-14 93.5 4.2 49 85-137 331-380 (389)
54 2vje_A E3 ubiquitin-protein li 99.0 2E-10 7E-15 71.4 2.1 49 85-135 7-56 (64)
55 1jm7_B BARD1, BRCA1-associated 98.9 3.5E-10 1.2E-14 78.7 2.6 48 84-136 20-67 (117)
56 2vje_B MDM4 protein; proto-onc 98.9 3.1E-10 1.1E-14 70.3 2.0 50 85-136 6-56 (63)
57 4ic3_A E3 ubiquitin-protein li 98.9 3.5E-10 1.2E-14 72.3 1.6 44 85-136 23-67 (74)
58 2yu4_A E3 SUMO-protein ligase 98.9 7.3E-10 2.5E-14 74.1 2.5 46 84-133 5-59 (94)
59 3hcs_A TNF receptor-associated 98.8 8.1E-10 2.8E-14 81.7 2.0 52 82-137 14-66 (170)
60 2c2l_A CHIP, carboxy terminus 98.8 1.4E-09 4.8E-14 86.1 3.0 50 83-136 205-255 (281)
61 1wim_A KIAA0161 protein; ring 98.8 3.7E-09 1.3E-13 70.6 3.6 49 84-133 3-61 (94)
62 3k1l_B Fancl; UBC, ring, RWD, 98.7 1.6E-09 5.4E-14 87.4 1.1 54 84-137 306-374 (381)
63 2ecg_A Baculoviral IAP repeat- 98.7 5.2E-09 1.8E-13 66.9 3.3 45 85-137 24-69 (75)
64 2f42_A STIP1 homology and U-bo 98.7 4.2E-09 1.4E-13 78.3 2.6 51 82-136 102-153 (179)
65 2ea5_A Cell growth regulator w 98.7 6.9E-09 2.3E-13 65.2 3.1 47 83-137 12-59 (68)
66 1vyx_A ORF K3, K3RING; zinc-bi 98.6 2.5E-08 8.4E-13 61.0 4.0 48 84-135 4-58 (60)
67 2yho_A E3 ubiquitin-protein li 98.6 1.1E-08 3.7E-13 66.2 1.7 45 85-137 17-62 (79)
68 3htk_C E3 SUMO-protein ligase 98.6 1.7E-08 5.7E-13 78.9 2.9 50 84-136 179-232 (267)
69 3t6p_A Baculoviral IAP repeat- 98.5 3E-08 1E-12 81.1 1.5 45 84-136 293-338 (345)
70 2bay_A PRE-mRNA splicing facto 98.4 1E-07 3.4E-12 58.4 1.4 49 86-137 3-51 (61)
71 3vk6_A E3 ubiquitin-protein li 98.2 1.1E-06 3.8E-11 58.3 3.4 47 88-137 3-50 (101)
72 3nw0_A Non-structural maintena 97.9 9.3E-06 3.2E-10 63.0 4.9 50 85-137 179-230 (238)
73 2ko5_A Ring finger protein Z; 96.8 0.0014 4.7E-08 42.7 4.2 52 85-141 27-78 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 95.4 0.0096 3.3E-07 39.4 2.8 35 85-120 2-36 (101)
75 2lri_C Autoimmune regulator; Z 94.7 0.039 1.3E-06 33.7 3.9 47 84-134 10-60 (66)
76 1we9_A PHD finger family prote 91.7 0.092 3.1E-06 31.6 2.1 50 84-133 4-58 (64)
77 2l2t_A Receptor tyrosine-prote 91.5 0.71 2.4E-05 25.6 5.4 8 27-34 30-37 (44)
78 2l5u_A Chromodomain-helicase-D 91.0 0.2 7E-06 29.9 3.1 45 84-132 9-57 (61)
79 1wil_A KIAA1045 protein; ring 88.9 1.1 3.7E-05 28.5 5.2 35 84-120 13-47 (89)
80 2k16_A Transcription initiatio 88.7 0.14 4.9E-06 31.8 1.2 52 85-137 17-72 (75)
81 1mm2_A MI2-beta; PHD, zinc fin 88.7 0.15 5.1E-06 30.5 1.2 47 84-134 7-57 (61)
82 2cs3_A Protein C14ORF4, MY039 88.6 1.2 4E-05 28.1 5.2 39 84-122 13-51 (93)
83 1f62_A Transcription factor WS 87.3 0.37 1.3E-05 27.4 2.2 44 88-132 2-49 (51)
84 2l43_A N-teminal domain from h 86.7 0.48 1.6E-05 30.5 2.8 52 84-135 23-77 (88)
85 3u5n_A E3 ubiquitin-protein li 86.3 0.24 8.3E-06 37.1 1.4 47 84-134 5-55 (207)
86 3o36_A Transcription intermedi 86.3 0.23 7.8E-06 36.5 1.2 46 85-134 3-52 (184)
87 1xwh_A Autoimmune regulator; P 85.5 0.35 1.2E-05 29.3 1.6 46 84-133 6-55 (66)
88 2puy_A PHD finger protein 21A; 85.0 0.15 5.1E-06 30.3 -0.3 48 84-135 3-54 (60)
89 1z60_A TFIIH basal transcripti 84.8 0.65 2.2E-05 27.6 2.4 43 87-130 16-58 (59)
90 2jwa_A Receptor tyrosine-prote 84.7 3.5 0.00012 22.8 5.5 7 8-14 14-20 (44)
91 1y02_A CARP2, FYVE-ring finger 84.5 0.18 6.2E-06 34.5 -0.1 51 85-135 18-68 (120)
92 2ku3_A Bromodomain-containing 84.5 0.61 2.1E-05 28.7 2.4 51 83-133 13-66 (71)
93 1wep_A PHF8; structural genomi 84.1 1.7 5.7E-05 27.1 4.4 51 85-136 11-66 (79)
94 2yql_A PHD finger protein 21A; 84.0 0.2 6.8E-06 29.3 -0.1 45 84-132 7-55 (56)
95 2vpb_A Hpygo1, pygopus homolog 84.0 0.95 3.3E-05 27.3 3.0 34 84-117 6-40 (65)
96 3m62_A Ubiquitin conjugation f 83.6 0.72 2.4E-05 42.3 3.3 51 82-136 887-938 (968)
97 1z2q_A LM5-1; membrane protein 82.4 1.7 5.8E-05 27.5 3.9 37 84-120 19-55 (84)
98 2e6r_A Jumonji/ARID domain-con 81.9 0.62 2.1E-05 30.2 1.7 49 84-133 14-66 (92)
99 1wem_A Death associated transc 81.8 0.91 3.1E-05 28.1 2.4 48 86-135 16-72 (76)
100 2lv9_A Histone-lysine N-methyl 81.2 0.74 2.5E-05 30.2 1.9 45 86-132 28-75 (98)
101 1wee_A PHD finger family prote 80.9 0.47 1.6E-05 29.2 0.8 49 85-134 15-67 (72)
102 2klu_A T-cell surface glycopro 80.1 3.5 0.00012 24.8 4.4 15 11-25 12-26 (70)
103 2ri7_A Nucleosome-remodeling f 80.0 1.2 4E-05 32.2 2.8 49 84-133 6-59 (174)
104 2yw8_A RUN and FYVE domain-con 79.9 1.5 5.2E-05 27.6 3.0 37 84-120 17-53 (82)
105 2ysm_A Myeloid/lymphoid or mix 79.8 0.78 2.7E-05 30.6 1.7 47 84-131 5-55 (111)
106 3t7l_A Zinc finger FYVE domain 79.4 1.7 5.7E-05 27.9 3.1 50 86-135 20-75 (90)
107 1vfy_A Phosphatidylinositol-3- 79.3 1.6 5.5E-05 26.8 2.9 33 87-119 12-44 (73)
108 1x4u_A Zinc finger, FYVE domai 78.8 1.7 5.7E-05 27.5 3.0 35 84-118 12-46 (84)
109 1wfk_A Zinc finger, FYVE domai 78.8 1.9 6.3E-05 27.6 3.2 53 84-136 7-66 (88)
110 2kgg_A Histone demethylase jar 78.4 2 6.8E-05 24.5 2.9 44 88-131 4-52 (52)
111 3v43_A Histone acetyltransfera 78.2 0.67 2.3E-05 31.1 1.0 45 88-132 63-111 (112)
112 3i2d_A E3 SUMO-protein ligase 78.0 0.68 2.3E-05 37.8 1.1 46 87-135 250-299 (371)
113 1joc_A EEA1, early endosomal a 77.9 1.3 4.3E-05 30.4 2.3 34 86-119 69-102 (125)
114 2lbm_A Transcriptional regulat 77.7 3.5 0.00012 28.9 4.6 46 83-132 60-116 (142)
115 2k9y_A Ephrin type-A receptor 77.0 1.4 4.7E-05 23.8 1.9 6 28-33 33-38 (41)
116 1fp0_A KAP-1 corepressor; PHD 76.7 2.1 7.2E-05 27.5 3.0 47 83-133 22-72 (88)
117 1wew_A DNA-binding family prot 76.1 2 6.9E-05 26.7 2.7 48 85-134 15-73 (78)
118 3ql9_A Transcriptional regulat 75.0 5 0.00017 27.6 4.7 46 83-132 54-110 (129)
119 1dvp_A HRS, hepatocyte growth 74.3 1.7 5.8E-05 32.7 2.4 34 86-119 161-194 (220)
120 4fo9_A E3 SUMO-protein ligase 73.9 1.8 6.2E-05 35.2 2.6 46 87-135 216-265 (360)
121 3zyq_A Hepatocyte growth facto 73.4 2 6.7E-05 32.5 2.5 50 86-135 164-221 (226)
122 1weu_A Inhibitor of growth fam 72.8 2.8 9.7E-05 27.0 2.8 45 85-134 35-86 (91)
123 1wev_A Riken cDNA 1110020M19; 72.7 1.1 3.6E-05 28.8 0.8 52 85-136 15-75 (88)
124 1wen_A Inhibitor of growth fam 72.1 4.6 0.00016 24.7 3.6 45 85-134 15-66 (71)
125 2xb1_A Pygopus homolog 2, B-ce 70.6 3.1 0.00011 27.5 2.7 50 86-135 3-63 (105)
126 3v43_A Histone acetyltransfera 70.5 6.8 0.00023 26.0 4.5 34 85-118 4-42 (112)
127 2yt5_A Metal-response element- 69.8 3.2 0.00011 24.7 2.5 50 84-133 4-61 (66)
128 2k21_A Potassium voltage-gated 68.3 5.9 0.0002 27.1 3.7 34 6-39 51-84 (138)
129 2ro1_A Transcription intermedi 67.8 1.3 4.6E-05 32.5 0.5 44 86-133 2-49 (189)
130 2k1k_A Ephrin type-A receptor 67.3 8.3 0.00028 20.5 3.5 16 9-24 14-29 (38)
131 1x64_A Alpha-actinin-2 associa 67.2 8 0.00027 24.2 4.2 40 85-136 24-63 (89)
132 2d8v_A Zinc finger FYVE domain 66.5 5.2 0.00018 24.1 2.8 33 83-120 5-38 (67)
133 3o70_A PHD finger protein 13; 66.3 1.9 6.6E-05 26.1 0.9 47 84-132 17-66 (68)
134 1weo_A Cellulose synthase, cat 65.7 24 0.00081 22.6 6.8 55 85-139 15-73 (93)
135 3shb_A E3 ubiquitin-protein li 65.1 1.4 4.9E-05 27.5 0.2 43 89-132 29-76 (77)
136 3kv5_D JMJC domain-containing 64.6 3.2 0.00011 35.2 2.3 49 87-136 38-91 (488)
137 3mpx_A FYVE, rhogef and PH dom 64.2 1.4 4.8E-05 36.3 0.0 50 85-134 374-430 (434)
138 3mjh_B Early endosome antigen 63.9 0.78 2.7E-05 24.0 -1.0 17 86-102 5-21 (34)
139 3lqh_A Histone-lysine N-methyl 63.6 5.1 0.00017 29.3 2.9 49 87-135 3-65 (183)
140 2e6s_A E3 ubiquitin-protein li 62.5 2 6.7E-05 26.8 0.4 44 88-132 28-76 (77)
141 2l2t_A Receptor tyrosine-prote 60.9 17 0.0006 19.9 4.1 21 20-40 20-40 (44)
142 4gne_A Histone-lysine N-methyl 60.1 8.9 0.0003 25.4 3.4 47 83-135 12-64 (107)
143 3asl_A E3 ubiquitin-protein li 60.1 2.6 8.8E-05 25.7 0.7 44 88-132 20-68 (70)
144 1zbd_B Rabphilin-3A; G protein 60.1 6.3 0.00022 27.3 2.7 50 84-133 53-107 (134)
145 3ask_A E3 ubiquitin-protein li 59.8 2.9 9.9E-05 31.7 1.0 44 88-132 176-224 (226)
146 1afo_A Glycophorin A; integral 57.8 20 0.00067 19.1 4.4 24 12-35 15-38 (40)
147 2cor_A Pinch protein; LIM doma 57.6 13 0.00046 22.6 3.8 40 85-136 14-53 (79)
148 2gmg_A Hypothetical protein PF 57.2 3.1 0.00011 27.6 0.7 26 107-137 72-97 (105)
149 2ysm_A Myeloid/lymphoid or mix 56.9 2.2 7.7E-05 28.3 -0.0 45 88-133 56-104 (111)
150 2a20_A Regulating synaptic mem 55.2 1.8 6.1E-05 25.5 -0.6 48 84-132 7-59 (62)
151 2cu8_A Cysteine-rich protein 2 55.2 8.4 0.00029 23.2 2.5 40 86-136 9-48 (76)
152 2co8_A NEDD9 interacting prote 54.5 14 0.00048 22.6 3.5 42 85-137 14-55 (82)
153 2kwj_A Zinc finger protein DPF 54.2 1.3 4.5E-05 29.7 -1.6 47 88-135 60-110 (114)
154 2dar_A PDZ and LIM domain prot 53.3 15 0.0005 23.0 3.5 40 85-136 24-63 (90)
155 3c6w_A P28ING5, inhibitor of g 52.2 6.4 0.00022 23.0 1.5 43 85-132 8-57 (59)
156 2vnf_A ING 4, P29ING4, inhibit 51.5 6.4 0.00022 23.0 1.4 42 86-132 10-58 (60)
157 3fyb_A Protein of unknown func 51.4 5.3 0.00018 26.1 1.1 12 111-122 41-52 (104)
158 2o35_A Hypothetical protein DU 51.4 5.3 0.00018 26.1 1.1 12 111-122 42-53 (105)
159 2rsd_A E3 SUMO-protein ligase 51.4 2.4 8.3E-05 25.6 -0.5 46 86-132 10-64 (68)
160 1x62_A C-terminal LIM domain p 51.0 12 0.00043 22.6 2.8 38 86-135 15-52 (79)
161 2dj7_A Actin-binding LIM prote 51.0 12 0.00042 22.9 2.8 40 85-135 14-53 (80)
162 2d8z_A Four and A half LIM dom 50.1 19 0.00066 21.0 3.6 37 87-135 6-42 (70)
163 2l16_A SEC-independent protein 50.1 11 0.00038 23.4 2.4 11 1-11 2-12 (78)
164 2d8x_A Protein pinch; LIM doma 50.0 15 0.0005 21.6 3.0 39 86-136 5-43 (70)
165 1zfo_A LAsp-1; LIM domain, zin 49.2 9.6 0.00033 19.0 1.7 27 87-116 4-30 (31)
166 2d8y_A Eplin protein; LIM doma 48.0 22 0.00076 22.1 3.7 40 86-136 15-54 (91)
167 3arc_H Photosystem II reaction 48.0 26 0.0009 20.8 3.6 18 9-26 26-43 (65)
168 2jmo_A Parkin; IBR, E3 ligase, 47.9 1.6 5.5E-05 27.3 -1.8 16 107-122 55-70 (80)
169 3kqi_A GRC5, PHD finger protei 47.7 10 0.00035 23.2 2.0 48 89-136 12-64 (75)
170 2l6w_A Beta-type platelet-deri 53.2 3.9 0.00013 21.8 0.0 8 8-15 6-13 (39)
171 3a1b_A DNA (cytosine-5)-methyl 47.1 20 0.0007 25.5 3.7 44 84-131 77-132 (159)
172 2pv0_B DNA (cytosine-5)-methyl 46.4 23 0.00078 29.0 4.3 46 84-133 91-148 (386)
173 1iml_A CRIP, cysteine rich int 46.2 12 0.00041 22.4 2.2 31 86-119 27-58 (76)
174 1wyh_A SLIM 2, skeletal muscle 44.9 27 0.00092 20.4 3.6 40 87-136 6-45 (72)
175 2cur_A Skeletal muscle LIM-pro 44.2 20 0.00068 20.9 2.9 37 87-135 6-42 (69)
176 3arc_J Photosystem II reaction 43.9 34 0.0011 18.2 3.3 23 6-28 10-32 (40)
177 1a7i_A QCRP2 (LIM1); LIM domai 43.8 8.9 0.0003 23.4 1.3 40 86-136 7-46 (81)
178 2g6q_A Inhibitor of growth pro 43.3 11 0.00036 22.3 1.5 44 86-132 11-59 (62)
179 2l4z_A DNA endonuclease RBBP8, 42.8 13 0.00043 25.1 2.0 39 86-135 61-99 (123)
180 1wig_A KIAA1808 protein; LIM d 42.3 18 0.00062 21.6 2.5 36 88-135 7-42 (73)
181 1nyp_A Pinch protein; LIM doma 42.1 21 0.00071 20.6 2.7 39 86-136 5-43 (66)
182 1g47_A Pinch protein; LIM doma 41.2 22 0.00075 21.2 2.8 42 85-136 10-51 (77)
183 1x4l_A Skeletal muscle LIM-pro 41.1 33 0.0011 20.0 3.6 39 86-135 5-46 (72)
184 2fiy_A Protein FDHE homolog; F 41.0 2.7 9.2E-05 33.5 -1.9 50 84-133 180-231 (309)
185 2ct7_A Ring finger protein 31; 40.9 3 0.0001 26.4 -1.4 18 103-120 44-61 (86)
186 1x6a_A LIMK-2, LIM domain kina 40.4 31 0.0011 20.8 3.5 37 87-135 16-52 (81)
187 3o7a_A PHD finger protein 13 v 39.8 6.7 0.00023 22.1 0.2 41 91-132 8-51 (52)
188 1v6g_A Actin binding LIM prote 39.4 20 0.00068 21.7 2.4 38 87-136 16-53 (81)
189 2jvx_A NF-kappa-B essential mo 39.4 7.7 0.00026 19.2 0.3 12 125-136 4-15 (28)
190 1q55_A EP-cadherin, C-cadherin 39.0 6.4 0.00022 35.8 0.0 15 3-17 701-715 (880)
191 2knc_B Integrin beta-3; transm 38.1 27 0.00094 21.6 2.9 12 8-19 10-21 (79)
192 2cuq_A Four and A half LIM dom 38.0 46 0.0016 19.8 4.0 38 86-135 15-52 (80)
193 2dlo_A Thyroid receptor-intera 36.9 21 0.00073 21.6 2.3 38 86-135 15-52 (81)
194 1x63_A Skeletal muscle LIM-pro 36.8 46 0.0016 19.9 3.9 41 86-136 15-55 (82)
195 1loi_A Cyclic 3',5'-AMP specif 35.6 2.3 7.9E-05 19.9 -1.8 12 111-122 6-17 (26)
196 2zet_C Melanophilin; complex, 35.1 22 0.00074 25.1 2.3 47 85-133 67-117 (153)
197 1x68_A FHL5 protein; four-and- 34.9 34 0.0012 20.3 3.0 38 87-135 6-46 (76)
198 1x4k_A Skeletal muscle LIM-pro 34.5 28 0.00094 20.4 2.5 40 87-136 6-45 (72)
199 2jne_A Hypothetical protein YF 34.4 20 0.00067 23.4 1.7 42 87-137 33-74 (101)
200 1x3h_A Leupaxin; paxillin fami 33.8 41 0.0014 20.1 3.2 39 86-136 15-53 (80)
201 2jmi_A Protein YNG1, ING1 homo 31.7 17 0.00058 23.3 1.1 45 85-132 25-75 (90)
202 3arc_M Photosystem II reaction 31.2 60 0.0021 16.9 3.8 21 8-28 8-28 (36)
203 1m3v_A FLIN4, fusion of the LI 31.2 35 0.0012 22.5 2.8 49 86-136 32-81 (122)
204 2jo1_A Phospholemman; FXYD1, N 31.1 90 0.0031 18.9 4.9 10 9-18 22-31 (72)
205 3f6q_B LIM and senescent cell 30.5 43 0.0015 19.3 2.9 43 85-137 10-52 (72)
206 2jyp_A Aragonite protein AP7; 29.9 13 0.00043 18.7 0.2 25 85-113 8-32 (36)
207 2lq6_A Bromodomain-containing 28.5 50 0.0017 20.7 3.0 35 85-120 16-51 (87)
208 2l3k_A Rhombotin-2, linker, LI 28.3 34 0.0012 22.7 2.3 35 85-121 35-69 (123)
209 2jrp_A Putative cytoplasmic pr 27.8 35 0.0012 21.4 2.0 40 87-135 3-42 (81)
210 2xjy_A Rhombotin-2; oncoprotei 27.6 49 0.0017 21.9 3.0 50 85-136 28-78 (131)
211 2pk7_A Uncharacterized protein 27.4 13 0.00046 22.5 0.1 18 119-136 3-20 (69)
212 2ehe_A Four and A half LIM dom 27.3 1E+02 0.0035 18.3 4.4 40 86-135 15-54 (82)
213 2jny_A Uncharacterized BCR; st 27.2 12 0.00042 22.5 -0.1 18 119-136 5-22 (67)
214 1j2o_A FLIN2, fusion of rhombo 27.1 47 0.0016 21.6 2.8 37 85-123 29-66 (114)
215 1fdm_A FD coat protein, FD maj 26.9 70 0.0024 17.9 3.0 14 1-18 25-38 (50)
216 2egq_A FHL1 protein; LIM domai 26.1 60 0.0021 19.1 3.0 40 86-136 15-58 (77)
217 1wd2_A Ariadne-1 protein homol 26.0 26 0.0009 20.4 1.2 15 124-138 6-20 (60)
218 1wff_A Riken cDNA 2810002D23 p 25.4 63 0.0022 20.4 2.9 27 85-115 24-52 (85)
219 1rut_X Flinc4, fusion protein 24.1 28 0.00095 25.0 1.3 48 86-135 32-80 (188)
220 2rgt_A Fusion of LIM/homeobox 22.6 73 0.0025 22.2 3.3 48 84-137 31-78 (169)
221 2xqn_T Testin, TESS; metal-bin 21.9 73 0.0025 20.9 3.0 47 85-136 29-75 (126)
222 4bbq_A Lysine-specific demethy 20.8 13 0.00044 24.6 -1.0 44 89-132 62-113 (117)
223 3pwf_A Rubrerythrin; non heme 20.7 45 0.0015 23.8 1.8 21 106-133 142-162 (170)
224 2iyb_E Testin, TESS, TES; LIM 20.5 49 0.0017 18.9 1.7 37 88-135 4-43 (65)
225 2oar_A Large-conductance mecha 20.2 1.1E+02 0.0038 22.0 3.7 25 8-32 95-119 (174)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.72 E-value=1.5e-17 Score=111.46 Aligned_cols=80 Identities=30% Similarity=0.607 Sum_probs=70.2
Q ss_pred CCCCCCCCCHHHHhhCCCccccccccCCCCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCcccccccccc
Q 029544 56 PGHRINGLEPVLVAAIPTMKFNQEAFKSVEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQ 135 (191)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~ 135 (191)
......++++..++.+|...+.........+..|+||++.+..+.....++ |+|.||..||..|+..+..||+||..+.
T Consensus 10 ~~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 10 HMVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp CSSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 466778999999999999888766656667788999999999888887887 9999999999999999999999999886
Q ss_pred C
Q 029544 136 D 136 (191)
Q Consensus 136 ~ 136 (191)
.
T Consensus 89 ~ 89 (91)
T 2l0b_A 89 P 89 (91)
T ss_dssp C
T ss_pred C
Confidence 4
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1e-16 Score=103.39 Aligned_cols=68 Identities=32% Similarity=0.954 Sum_probs=55.0
Q ss_pred HhhCCCccccccccCCCCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCC
Q 029544 68 VAAIPTMKFNQEAFKSVEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDP 137 (191)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 137 (191)
++.+|..++.... ...++..|+||++.+..+..+..++ |+|.||..|+.+|+..+..||+||+++...
T Consensus 6 i~~lp~~~~~~~~-~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 6 SGQLPSYRFNPNN-HQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CSSCCCEEBCSSS-CSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred HhhCCcEEecCcc-ccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 3456666665332 3346678999999999988877886 999999999999999888999999988754
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.55 E-value=3e-15 Score=90.54 Aligned_cols=52 Identities=46% Similarity=1.177 Sum_probs=45.5
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCcccccccccc
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQ 135 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~ 135 (191)
+++..|+||++.+..+.....++.|+|.||..|+.+|+..+.+||+||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3566899999999988777777669999999999999999999999998764
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=5.1e-15 Score=95.05 Aligned_cols=55 Identities=31% Similarity=0.869 Sum_probs=48.4
Q ss_pred CCCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCCC
Q 029544 83 SVEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDPL 138 (191)
Q Consensus 83 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~ 138 (191)
...+..|+||++.+..+..+..++ |+|.||..||.+|+..+..||+||..+....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 345678999999999988888887 9999999999999998889999999987543
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.54 E-value=6.4e-15 Score=95.53 Aligned_cols=55 Identities=38% Similarity=0.853 Sum_probs=48.3
Q ss_pred CCCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCCC
Q 029544 83 SVEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDPL 138 (191)
Q Consensus 83 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~ 138 (191)
......|+||++.|..+..+..++ |+|.||..||.+|+..+..||+||..+....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred CCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence 345678999999999888887786 9999999999999998899999999987653
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=9.3e-15 Score=92.53 Aligned_cols=55 Identities=36% Similarity=0.939 Sum_probs=47.6
Q ss_pred CCCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCCC
Q 029544 83 SVEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDPL 138 (191)
Q Consensus 83 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~ 138 (191)
......|+||++.+........++ |+|.||..|+.+|+..+..||+||..+....
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 345678999999998877777776 9999999999999998889999999987653
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.53 E-value=1.6e-14 Score=100.42 Aligned_cols=64 Identities=23% Similarity=0.554 Sum_probs=49.0
Q ss_pred CCCcCcccccccccCc---------------cEEEcCCCCCcccHhhHHHHh-----cCCCccccccccccCCCCCCCcc
Q 029544 85 EDAECSICLGEYQDKE---------------VLRIMPQCGHSFHLACIDIWL-----RKKTTCPVCRLPLQDPLGRKHAR 144 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~---------------~~~~~~~C~H~f~~~Ci~~wl-----~~~~~CP~Cr~~~~~~~~~~~~~ 144 (191)
.+..|+||++.|..+. ....+ +|+|.||..||.+|+ ..+..||+||..+....+.++..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~qp~g 102 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLT-KCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPWG 102 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEES-SSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTTS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecC-CCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCCCCC
Confidence 4568999999997653 22344 599999999999999 45678999999998877666555
Q ss_pred ccccc
Q 029544 145 EATFS 149 (191)
Q Consensus 145 ~~~~~ 149 (191)
.+...
T Consensus 103 ~m~~~ 107 (114)
T 1v87_A 103 KMEVF 107 (114)
T ss_dssp SCCCS
T ss_pred eEEEE
Confidence 54443
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=2.2e-14 Score=93.83 Aligned_cols=52 Identities=29% Similarity=0.823 Sum_probs=41.7
Q ss_pred CCCcCccccccccc-----------CccEEEcCCCCCcccHhhHHHHhcCCCccccccccccC
Q 029544 85 EDAECSICLGEYQD-----------KEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 85 ~~~~C~IC~~~~~~-----------~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
++..|+||++.+.+ ...++.+++|+|.||..||.+|+..+.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 45668888888854 33344555699999999999999999999999998753
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.45 E-value=4.7e-14 Score=85.17 Aligned_cols=51 Identities=29% Similarity=0.772 Sum_probs=42.0
Q ss_pred CCCCcCcccccccccCc-cEEEcCCCCCcccHhhHHHHhcCCCcccccccccc
Q 029544 84 VEDAECSICLGEYQDKE-VLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQ 135 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~-~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~ 135 (191)
..+..|+||++.+.+.. ....+ +|+|.||..|+.+|+..+..||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVL-PCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEEC-TTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEec-CCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 34668999999997643 34455 49999999999999998899999998764
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.42 E-value=7.4e-14 Score=88.70 Aligned_cols=53 Identities=28% Similarity=0.744 Sum_probs=44.1
Q ss_pred CCCCcCcccccccccC----ccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCC
Q 029544 84 VEDAECSICLGEYQDK----EVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDP 137 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~----~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 137 (191)
.++..|+||++.+.++ .....+ +|||.||..|+.+|+..+..||+||..+...
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEEC-TTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeC-CCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 4577899999999875 333445 5999999999999999889999999988754
No 11
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.3e-13 Score=87.69 Aligned_cols=49 Identities=27% Similarity=0.581 Sum_probs=43.1
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccC
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
.+...|+||++.+.++..+ +|+|.||..|+..|+..+..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~----~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSL----PCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEE----TTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCCEEc----cCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 4567899999999887555 699999999999999988999999998864
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=8.8e-14 Score=87.76 Aligned_cols=53 Identities=28% Similarity=0.736 Sum_probs=43.2
Q ss_pred CCCCCcCcccccccccCc----cEEEcCCCCCcccHhhHHHHhcCCCccccccccccC
Q 029544 83 SVEDAECSICLGEYQDKE----VLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 83 ~~~~~~C~IC~~~~~~~~----~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
..+...|+||++.+.++. ....+ +|+|.||..|+..|+..+..||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEEC-SSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeC-CCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 345678999999998752 22345 599999999999999988899999998753
No 13
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.1e-13 Score=87.00 Aligned_cols=53 Identities=26% Similarity=0.554 Sum_probs=44.1
Q ss_pred CCCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCCC
Q 029544 83 SVEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDPL 138 (191)
Q Consensus 83 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~ 138 (191)
..+...|+||++.+.++..+ + +|+|.||..||..|+..+..||+||..+....
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~--~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 12 LTPYILCSICKGYLIDATTI--T-ECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CCGGGSCTTTSSCCSSCEEC--S-SSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred cCCCCCCCCCChHHHCcCEE--C-CCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 34567899999999886443 2 59999999999999998889999999987543
No 14
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.38 E-value=3.3e-13 Score=92.48 Aligned_cols=51 Identities=27% Similarity=0.684 Sum_probs=42.2
Q ss_pred CCCCcCcccccccccCc---------------cEEEcCCCCCcccHhhHHHHhcCCCcccccccccc
Q 029544 84 VEDAECSICLGEYQDKE---------------VLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQ 135 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~---------------~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~ 135 (191)
.++..|+||++.|.... .+..+ +|+|.||..||.+|+..+.+||+||.++.
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~-~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG-VCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEE-TTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeec-ccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 35678999999988652 23445 59999999999999999999999999864
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.36 E-value=2e-13 Score=84.82 Aligned_cols=52 Identities=29% Similarity=0.751 Sum_probs=42.8
Q ss_pred CCCcCcccccccccC----ccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCC
Q 029544 85 EDAECSICLGEYQDK----EVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDP 137 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~----~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 137 (191)
++..|+||++.+.++ .....+ +|||.||..|+.+|+..+..||+||..+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 456899999999875 223344 5999999999999999888999999988754
No 16
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=6e-13 Score=86.58 Aligned_cols=55 Identities=29% Similarity=0.696 Sum_probs=44.3
Q ss_pred CCCCCCcCcccccccccCccEEEcCCCC-----CcccHhhHHHHhcCC--CccccccccccCCC
Q 029544 82 KSVEDAECSICLGEYQDKEVLRIMPQCG-----HSFHLACIDIWLRKK--TTCPVCRLPLQDPL 138 (191)
Q Consensus 82 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~-----H~f~~~Ci~~wl~~~--~~CP~Cr~~~~~~~ 138 (191)
...++..|.||++++.+...+ ++| |+ |.||..||++|+..+ .+||+||..+....
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 334567899999999876666 466 96 999999999999855 48999999987544
No 17
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=4.1e-13 Score=85.08 Aligned_cols=50 Identities=38% Similarity=0.967 Sum_probs=42.6
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCCC
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDPL 138 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~ 138 (191)
.+...|+||++.+.+ ..+ +|+|.||..|+.+|+..+..||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~----~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LIL-PCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEE-TTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC----ccc-CCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 456789999999887 334 59999999999999998899999999887543
No 18
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=8.2e-13 Score=82.76 Aligned_cols=50 Identities=20% Similarity=0.524 Sum_probs=42.9
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhc-CCCccccccccccCC
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR-KKTTCPVCRLPLQDP 137 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~-~~~~CP~Cr~~~~~~ 137 (191)
.+...|+||++.+.++..+ +|||.||..|+..|+. ....||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQT----ECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEESSCCCC----SSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhcCeeEC----CCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 4567899999999988776 6999999999999995 566799999988653
No 19
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=8.7e-13 Score=84.16 Aligned_cols=51 Identities=31% Similarity=0.693 Sum_probs=42.6
Q ss_pred CCCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhc---CCCccccccccccCC
Q 029544 83 SVEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR---KKTTCPVCRLPLQDP 137 (191)
Q Consensus 83 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~---~~~~CP~Cr~~~~~~ 137 (191)
..+...|+||++.+.++..+ +|||.||..|+..|+. ....||+||..+...
T Consensus 17 ~~~~~~C~IC~~~~~~~~~~----~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVTI----DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEEC----TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred CccCCEeccCCcccCCeEEc----CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 45677899999999976655 6999999999999997 455799999988653
No 20
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=4.8e-13 Score=87.25 Aligned_cols=49 Identities=27% Similarity=0.542 Sum_probs=42.8
Q ss_pred CCCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCcccccccccc
Q 029544 83 SVEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQ 135 (191)
Q Consensus 83 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~ 135 (191)
......|+||++.+.++..+ +|+|.||..|+..|+.....||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPVVT----KCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSEEEC----TTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcCeeEc----cCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 34567899999999887544 69999999999999998889999999986
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.34 E-value=4.5e-13 Score=85.96 Aligned_cols=50 Identities=30% Similarity=0.584 Sum_probs=42.3
Q ss_pred CCCCCcCcccccccccCccEEEcCC-CCCcccHhhHHHHhcCC--CccccccccccC
Q 029544 83 SVEDAECSICLGEYQDKEVLRIMPQ-CGHSFHLACIDIWLRKK--TTCPVCRLPLQD 136 (191)
Q Consensus 83 ~~~~~~C~IC~~~~~~~~~~~~~~~-C~H~f~~~Ci~~wl~~~--~~CP~Cr~~~~~ 136 (191)
..+...|+||++.+.++..+ + |||.||..||..|+..+ ..||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~----~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 12 IPDELLCLICKDIMTDAVVI----PCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp SCGGGSCSSSCCCCTTCEEC----SSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCCCcCCChHHhCCeEc----CCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 34567899999999988776 6 99999999999999854 679999997653
No 22
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.32 E-value=5.8e-13 Score=95.61 Aligned_cols=48 Identities=33% Similarity=0.929 Sum_probs=42.5
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccC
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
++..|+||++.+.++..+ +|||.||..||..|+..+..||+||.++..
T Consensus 52 ~~~~C~iC~~~~~~~~~~----~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTL----NCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSSEEEE----TTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCCceEC----CCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 356799999999987665 699999999999999999999999998854
No 23
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.31 E-value=7.1e-13 Score=83.46 Aligned_cols=49 Identities=33% Similarity=0.933 Sum_probs=41.4
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccC
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
.+..|+||++.+.++. ..+ +|||.||..|+..|+..+..||+||..+..
T Consensus 4 ~~~~C~IC~~~~~~~~--~~~-~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYS--MAL-PCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCE--EET-TTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCc--Eec-CCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 4567999999988653 344 599999999999999988899999998864
No 24
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=3.9e-12 Score=83.96 Aligned_cols=54 Identities=24% Similarity=0.686 Sum_probs=43.7
Q ss_pred CCCCCcCcccccccccCcc-EEEcCCCCCcccHhhHHHHhcCC---CccccccccccCC
Q 029544 83 SVEDAECSICLGEYQDKEV-LRIMPQCGHSFHLACIDIWLRKK---TTCPVCRLPLQDP 137 (191)
Q Consensus 83 ~~~~~~C~IC~~~~~~~~~-~~~~~~C~H~f~~~Ci~~wl~~~---~~CP~Cr~~~~~~ 137 (191)
..+...|+||++.+.+... ...+ +|||.||..|+..|+..+ ..||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLL-HCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEEC-SSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ccCCCCCccCCccccccCCCeEEC-CCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 3556789999999998553 3445 599999999999999865 6799999987653
No 25
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.30 E-value=1.7e-12 Score=83.97 Aligned_cols=50 Identities=26% Similarity=0.523 Sum_probs=43.7
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcC-CCccccccccccCC
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK-KTTCPVCRLPLQDP 137 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~-~~~CP~Cr~~~~~~ 137 (191)
.+...|+||++.+.++..+ +|||.||..||..|+.. +..||+||..+...
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~----~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIV----STGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEE----TTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred cccCCCCCccccccCCEEc----CCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 4577899999999998766 69999999999999986 77899999988643
No 26
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.26 E-value=1.5e-12 Score=84.36 Aligned_cols=50 Identities=36% Similarity=0.775 Sum_probs=43.2
Q ss_pred CCCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcC-------CCccccccccccC
Q 029544 83 SVEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK-------KTTCPVCRLPLQD 136 (191)
Q Consensus 83 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~-------~~~CP~Cr~~~~~ 136 (191)
..+...|+||++.+.++..+ +|||.||..|+..|+.. ...||+||..+..
T Consensus 9 ~~~~~~C~IC~~~~~~p~~l----~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 9 VQEEVTCPICLELLTEPLSL----DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCEETTTTEECSSCCCC----SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cccCCCCcCCCcccCCeeEC----CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 34677899999999988776 69999999999999986 5679999998864
No 27
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=4.4e-12 Score=78.62 Aligned_cols=45 Identities=38% Similarity=0.774 Sum_probs=38.1
Q ss_pred CCCCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhc---CCCccccc
Q 029544 82 KSVEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR---KKTTCPVC 130 (191)
Q Consensus 82 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~---~~~~CP~C 130 (191)
...++..|+||++.+.++..+ +|||.||..||.+|+. ....||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTI----DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEEC----TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEe----CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 345677899999999987666 6999999999999998 45579998
No 28
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.25 E-value=6.8e-13 Score=92.24 Aligned_cols=52 Identities=27% Similarity=0.675 Sum_probs=1.5
Q ss_pred CCCCcCcccccccccCcc--------------EEEcCCCCCcccHhhHHHHhcCCCcccccccccc
Q 029544 84 VEDAECSICLGEYQDKEV--------------LRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQ 135 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~--------------~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~ 135 (191)
..+..|+||++.|..+.. ....++|+|.||..||.+|+..+.+||+||.++.
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CCC---------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 346789999999976321 1222259999999999999999999999999864
No 29
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.25 E-value=5.1e-12 Score=78.84 Aligned_cols=52 Identities=27% Similarity=0.776 Sum_probs=40.9
Q ss_pred CCcCccccc-ccccCccEEEcCCCCCcccHhhHHHHhcC-CCccccccccccCC
Q 029544 86 DAECSICLG-EYQDKEVLRIMPQCGHSFHLACIDIWLRK-KTTCPVCRLPLQDP 137 (191)
Q Consensus 86 ~~~C~IC~~-~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~-~~~CP~Cr~~~~~~ 137 (191)
+..|+||++ .+.++.....+.+|||.||..|+.+|+.. ...||+||..+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 567999999 88887643322259999999999999764 45699999988654
No 30
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.25 E-value=1.8e-12 Score=87.97 Aligned_cols=50 Identities=34% Similarity=0.796 Sum_probs=42.1
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCC-CccccccccccC
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKK-TTCPVCRLPLQD 136 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~-~~CP~Cr~~~~~ 136 (191)
.+...|+||++.+.++..+ + +|||.||..||..|+... ..||+||.++..
T Consensus 20 ~~~~~C~IC~~~~~~p~~~--~-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDARLC--P-HCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHHTBCTTTCSBCSSEEEC--T-TTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCccCCccccCcccc--C-CCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 3467899999999886551 2 699999999999999977 689999999864
No 31
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.25 E-value=4.4e-12 Score=83.01 Aligned_cols=51 Identities=37% Similarity=0.762 Sum_probs=42.9
Q ss_pred CCCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcC------CCccccccccccCC
Q 029544 83 SVEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK------KTTCPVCRLPLQDP 137 (191)
Q Consensus 83 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~------~~~CP~Cr~~~~~~ 137 (191)
..++..|+||++.+.++..+ +|+|.||..|+..|+.. ...||+||..+...
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPVSA----DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CCTTTSCTTTCSCCSSCEEC----TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CccCCCCcCCChhhCcceeC----CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 34567899999999988644 69999999999999986 66799999988643
No 32
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=6.9e-12 Score=82.07 Aligned_cols=50 Identities=40% Similarity=0.850 Sum_probs=43.2
Q ss_pred CCCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcC------CCccccccccccC
Q 029544 83 SVEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK------KTTCPVCRLPLQD 136 (191)
Q Consensus 83 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~------~~~CP~Cr~~~~~ 136 (191)
..+...|+||++.+.++..+ +|+|.||..|+..|+.. ...||+||..+..
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPLSL----DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCTTTCSCCSSCBCC----SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred ccCCCCCCCCCcccCCceeC----CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 34567899999999987666 69999999999999976 6779999998875
No 33
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.23 E-value=4.5e-12 Score=84.54 Aligned_cols=50 Identities=30% Similarity=0.584 Sum_probs=42.4
Q ss_pred CCCCCCcCcccccccccCccEEEcCC-CCCcccHhhHHHHhcC--CCcccccccccc
Q 029544 82 KSVEDAECSICLGEYQDKEVLRIMPQ-CGHSFHLACIDIWLRK--KTTCPVCRLPLQ 135 (191)
Q Consensus 82 ~~~~~~~C~IC~~~~~~~~~~~~~~~-C~H~f~~~Ci~~wl~~--~~~CP~Cr~~~~ 135 (191)
...++..|+||++.+.++..+ + |||.||..||..|+.. ...||+||..+.
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~~----~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVVI----PCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCTTTEETTTTEECSSCEEC----TTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCcCCCCCCCChhhcCceEC----CCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 345678899999999988766 7 9999999999999973 357999999874
No 34
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=8.8e-12 Score=75.78 Aligned_cols=43 Identities=40% Similarity=1.031 Sum_probs=36.7
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhc---CCCccccc
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR---KKTTCPVC 130 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~---~~~~CP~C 130 (191)
.+...|+||++.+.++..+ +|+|.||..||..|+. ....||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVII----ECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCC----SSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccEeC----CCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4567899999999998665 6999999999999954 55679998
No 35
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.19 E-value=7.7e-12 Score=88.55 Aligned_cols=54 Identities=28% Similarity=0.717 Sum_probs=44.5
Q ss_pred CCCCcCcccccccccC----ccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCCC
Q 029544 84 VEDAECSICLGEYQDK----EVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDPL 138 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~----~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~ 138 (191)
.+...|+||++.+.++ .....+ +|||.||..||.+|+..+..||+||..+....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEE-TTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCCcccChhhhCccccccCeEec-CCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 3567899999999876 223344 59999999999999999999999999987543
No 36
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=1.9e-11 Score=77.98 Aligned_cols=50 Identities=22% Similarity=0.561 Sum_probs=41.5
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCC--CccccccccccCC
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKK--TTCPVCRLPLQDP 137 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~--~~CP~Cr~~~~~~ 137 (191)
....|+||++.+..+.... .|+|.||..||.+|+..+ .+||+||.++...
T Consensus 14 ~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 4567999999998665432 699999999999999876 7899999888644
No 37
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.18 E-value=7.8e-12 Score=85.90 Aligned_cols=51 Identities=27% Similarity=0.709 Sum_probs=43.2
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCC
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDP 137 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 137 (191)
.++..|+||++.+.++..+ . +|||.||..|+..|+..+..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p~~~--~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTI--I-ECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEE--T-TTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhCcCEe--C-CCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 3567899999999876443 2 5999999999999999889999999998754
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.18 E-value=8.8e-12 Score=87.73 Aligned_cols=48 Identities=27% Similarity=0.567 Sum_probs=41.5
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCC-ccccccccccC
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKT-TCPVCRLPLQD 136 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~-~CP~Cr~~~~~ 136 (191)
+...|+||++.+.++..+ +|||.||..||..|+..+. .||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITT----VCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEEEC----TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcEEe----eCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 456899999999988666 6999999999999998544 89999999875
No 39
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.18 E-value=8.6e-12 Score=84.32 Aligned_cols=49 Identities=29% Similarity=0.733 Sum_probs=41.9
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccC
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
+...|+||++.+.++..+ . +|||.||..|+..|+..+..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p~~~--~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMII--P-QCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEEC--T-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEE--C-CCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 456899999999886433 2 599999999999999988899999998875
No 40
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.12 E-value=5.8e-12 Score=87.50 Aligned_cols=49 Identities=24% Similarity=0.687 Sum_probs=42.0
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcC-CCccccccccccC
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK-KTTCPVCRLPLQD 136 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~-~~~CP~Cr~~~~~ 136 (191)
.++..|+||++.+.++..+ +|||.||..|+..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTL----PCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSCEEC----TTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCceeEc----CCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3467899999999987766 69999999999999976 6679999998863
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.12 E-value=3e-11 Score=83.23 Aligned_cols=49 Identities=29% Similarity=0.647 Sum_probs=41.9
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCC---ccccccccccCC
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKT---TCPVCRLPLQDP 137 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~---~CP~Cr~~~~~~ 137 (191)
+...|+||++.+.++..+ +|||.||..|+..|+..+. .||+||..+...
T Consensus 20 ~~~~C~IC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 20 KILECPICLELIKEPVST----KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HHTSCSSSCCCCSSCCBC----TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCCcccChhhcCeEEC----CCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 356799999999988776 6999999999999998654 799999988754
No 42
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.12 E-value=1.2e-10 Score=75.30 Aligned_cols=55 Identities=20% Similarity=0.489 Sum_probs=41.1
Q ss_pred CCCCCcCcccccccccCc-cEEEcCCCCCcccHhhHHHHhc-CCCccccccccccCCC
Q 029544 83 SVEDAECSICLGEYQDKE-VLRIMPQCGHSFHLACIDIWLR-KKTTCPVCRLPLQDPL 138 (191)
Q Consensus 83 ~~~~~~C~IC~~~~~~~~-~~~~~~~C~H~f~~~Ci~~wl~-~~~~CP~Cr~~~~~~~ 138 (191)
.+++..|+||++.+.... ...-+ +|||.||..|+..++. ....||.||..+....
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~-~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPC-TCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSS-TTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred cccCCcCCccCccCcccccccccc-CCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 356778999999886432 22212 3999999999999875 4567999999987643
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.10 E-value=3.4e-11 Score=87.54 Aligned_cols=49 Identities=20% Similarity=0.489 Sum_probs=42.4
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCC-ccccccccccCC
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKT-TCPVCRLPLQDP 137 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~-~CP~Cr~~~~~~ 137 (191)
+...|+||++.+.++..+ +|||.||..||..|+.... .||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~pv~~----~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTT----ECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEEEC----TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCEEc----CCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 456899999999988765 6999999999999998654 799999998765
No 44
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.10 E-value=6.2e-11 Score=80.30 Aligned_cols=50 Identities=18% Similarity=0.110 Sum_probs=45.3
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCC
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDP 137 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 137 (191)
.+.+.|+||++.|.++..+ +|||.||..||..|+..+.+||+|+.++...
T Consensus 27 p~~~~CpI~~~~m~dPV~~----~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRL----PSGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp STTTBCTTTCSBCSSEEEE----TTTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred cHhhCCcCccCcccCCeEC----CCCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 4578899999999999888 7999999999999999888999999988653
No 45
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.10 E-value=4.3e-11 Score=78.70 Aligned_cols=49 Identities=18% Similarity=0.098 Sum_probs=44.3
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccC
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
.+.+.|+||++.|.++..+ +|||.||..||..|+..+.+||+|+.++..
T Consensus 12 p~~~~CpI~~~~m~dPV~~----~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRL----PSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSEEEC----TTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcCCeEC----CCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 4578899999999999887 799999999999999988899999988764
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.09 E-value=2.2e-11 Score=85.01 Aligned_cols=51 Identities=33% Similarity=0.563 Sum_probs=43.1
Q ss_pred CCCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCC-ccccccccccCC
Q 029544 83 SVEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKT-TCPVCRLPLQDP 137 (191)
Q Consensus 83 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~-~CP~Cr~~~~~~ 137 (191)
..+...|+||++.+.++..+ +|||.||..||..|+.... .||+||..+...
T Consensus 15 ~~~~~~C~IC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 15 LESKYECPICLMALREAVQT----PCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CCGGGBCTTTCSBCSSEEEC----TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcCChhhcCeEEC----CcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 34567899999999988554 6999999999999998655 899999988753
No 47
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.08 E-value=8.8e-11 Score=79.26 Aligned_cols=50 Identities=22% Similarity=0.128 Sum_probs=45.0
Q ss_pred CCCCcCcccccccccCccEEEcCCCC-CcccHhhHHHHhcCCCccccccccccCC
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCG-HSFHLACIDIWLRKKTTCPVCRLPLQDP 137 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~-H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 137 (191)
.+++.|+||++.|.++..+ +|| |.||..||..|+..+.+||+||.++...
T Consensus 20 p~~~~CpI~~~~m~dPV~~----~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVL----PSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBCSSEEEC----TTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred cHhcCCcCccccccCCeEC----CCCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 4578899999999999887 799 9999999999999888999999988753
No 48
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.06 E-value=4.8e-11 Score=85.85 Aligned_cols=51 Identities=24% Similarity=0.387 Sum_probs=43.0
Q ss_pred CCCCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCC-ccccccccccC
Q 029544 82 KSVEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKT-TCPVCRLPLQD 136 (191)
Q Consensus 82 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~-~CP~Cr~~~~~ 136 (191)
...+...|+||++.+.++..+ +|||.||..||..|+.... .||+||.++..
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~----~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQA----QCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEEC----TTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred cCCcCcCCCCCChhhcCcEEC----CCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 445678899999999998665 6999999999999998554 79999998643
No 49
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.06 E-value=5.4e-11 Score=87.70 Aligned_cols=49 Identities=33% Similarity=0.679 Sum_probs=40.9
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcC-CCccccccccccC
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK-KTTCPVCRLPLQD 136 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~-~~~CP~Cr~~~~~ 136 (191)
+...|+||++.+.++..+ + +|||.||..||..|+.. +..||+||..+..
T Consensus 53 ~~~~C~IC~~~~~~p~~~--~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTT--K-ECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSSEEEE--T-TTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhCcCEe--C-CCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 456899999999986433 3 59999999999999986 6779999999854
No 50
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.06 E-value=5.7e-11 Score=71.90 Aligned_cols=48 Identities=23% Similarity=0.566 Sum_probs=39.9
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCCC
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDPL 138 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~ 138 (191)
.+...|+||++.+.++..+ +|||.||..|+..| ...||+||..+....
T Consensus 4 ~~~~~C~IC~~~~~~p~~l----~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLL----PCLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCS----TTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccCCeEEc----CCCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 4567899999999988666 69999999998773 567999999887543
No 51
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.05 E-value=4.1e-11 Score=84.75 Aligned_cols=53 Identities=28% Similarity=0.744 Sum_probs=43.3
Q ss_pred CCCCcCcccccccccC----ccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCC
Q 029544 84 VEDAECSICLGEYQDK----EVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDP 137 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~----~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 137 (191)
.+...|+||++.+.++ .....+ +|||.||..|+.+|+..+.+||+||.++...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEE-TTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeC-CCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 4567899999998865 222344 5999999999999999999999999988643
No 52
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.03 E-value=7e-11 Score=82.07 Aligned_cols=49 Identities=31% Similarity=0.587 Sum_probs=42.2
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcC-CCccccccccccCC
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK-KTTCPVCRLPLQDP 137 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~-~~~CP~Cr~~~~~~ 137 (191)
+...|+||++.+.++..+ +|||.||..||..|+.. ...||+||..+...
T Consensus 22 ~~~~C~IC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 22 KSISCQICEHILADPVET----SCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HHTBCTTTCSBCSSEEEC----TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCcHhcCcEEc----CCCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 356799999999887665 69999999999999986 67899999998753
No 53
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.96 E-value=3.3e-10 Score=93.46 Aligned_cols=49 Identities=27% Similarity=0.720 Sum_probs=41.8
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhc-CCCccccccccccCC
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR-KKTTCPVCRLPLQDP 137 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~-~~~~CP~Cr~~~~~~ 137 (191)
....|+||++.+.++..+ +|||.||..|+..|+. ....||+||..+...
T Consensus 331 ~~~~C~ICle~~~~pv~l----pCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIE----PCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSSBCTTTSSSBCCEEEE----TTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCCccCcCCCCeEEe----CCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 346899999999876555 6999999999999998 678899999988653
No 54
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.95 E-value=2e-10 Score=71.36 Aligned_cols=49 Identities=29% Similarity=0.640 Sum_probs=39.9
Q ss_pred CCCcCcccccccccCccEEEcCCCCCc-ccHhhHHHHhcCCCcccccccccc
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHS-FHLACIDIWLRKKTTCPVCRLPLQ 135 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~wl~~~~~CP~Cr~~~~ 135 (191)
++..|.||++...+...+ .+| |||. ||..|+..|...+..||+||.++.
T Consensus 7 ~~~~C~IC~~~~~~~~~~-~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIV-HGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEEE-ETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCEEEE-CCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 455799999987765321 235 9999 899999999988888999999875
No 55
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.92 E-value=3.5e-10 Score=78.67 Aligned_cols=48 Identities=29% Similarity=0.555 Sum_probs=40.6
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccC
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
.+...|+||++.+.++..+. +|||.||..||..|+. ..||+||..+..
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~---~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLG---GCEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCC---SSSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred hhCCCCCCCChHhhCccEeC---CCCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 34678999999998876542 5999999999999987 779999999854
No 56
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.92 E-value=3.1e-10 Score=70.30 Aligned_cols=50 Identities=22% Similarity=0.471 Sum_probs=40.1
Q ss_pred CCCcCcccccccccCccEEEcCCCCCc-ccHhhHHHHhcCCCccccccccccC
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHS-FHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
....|.||++...+...+ .+| |||. ||..|+..|......||+||.++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~-~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNII-HGR-TGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEE-ETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEE-ecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 355799999987665422 245 9998 9999999999888889999998853
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.89 E-value=3.5e-10 Score=72.34 Aligned_cols=44 Identities=25% Similarity=0.603 Sum_probs=37.9
Q ss_pred CCCcCcccccccccCccEEEcCCCCCc-ccHhhHHHHhcCCCccccccccccC
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHS-FHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
++..|+||++.+.++..+ +|||. ||..|+..| ..||+||..+..
T Consensus 23 ~~~~C~iC~~~~~~~~~~----pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFV----PCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCEEEE----TTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCEEEc----CCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 456799999998887666 69999 999999988 789999998864
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.87 E-value=7.3e-10 Score=74.13 Aligned_cols=46 Identities=22% Similarity=0.487 Sum_probs=39.9
Q ss_pred CCCCcCcccccccccCccEEEcCC-CCCcccHhhHHHHhcCC------Ccccc--cccc
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQ-CGHSFHLACIDIWLRKK------TTCPV--CRLP 133 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~-C~H~f~~~Ci~~wl~~~------~~CP~--Cr~~ 133 (191)
...+.|+||++.|.++..+ + |||.||..||..|+..+ ..||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dPV~~----~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKN----KVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEE----SSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCCEEc----CCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4567899999999998877 5 99999999999999854 47999 9866
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.83 E-value=8.1e-10 Score=81.71 Aligned_cols=52 Identities=33% Similarity=0.554 Sum_probs=43.3
Q ss_pred CCCCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCC-CccccccccccCC
Q 029544 82 KSVEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKK-TTCPVCRLPLQDP 137 (191)
Q Consensus 82 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~-~~CP~Cr~~~~~~ 137 (191)
...+...|+||++.+.++..+ +|||.||..|+..|+... ..||+||..+...
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~----~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQT----PCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEEC----TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCChhhcCcEEC----CCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 345677899999999988654 699999999999999754 4899999988653
No 60
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.82 E-value=1.4e-09 Score=86.08 Aligned_cols=50 Identities=18% Similarity=0.215 Sum_probs=43.1
Q ss_pred CCCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcC-CCccccccccccC
Q 029544 83 SVEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK-KTTCPVCRLPLQD 136 (191)
Q Consensus 83 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~-~~~CP~Cr~~~~~ 136 (191)
....+.|+||++.+.+++.+ +|||.||..||..|+.. +.+||+||.++..
T Consensus 205 ~~~~~~c~i~~~~~~dPv~~----~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCIT----PSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEEC----SSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CCcccCCcCcCCHhcCCeEC----CCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 34578899999999999887 79999999999999985 4459999998864
No 61
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.78 E-value=3.7e-09 Score=70.59 Aligned_cols=49 Identities=27% Similarity=0.698 Sum_probs=39.9
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcC--------CCcccc--cccc
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK--------KTTCPV--CRLP 133 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~--------~~~CP~--Cr~~ 133 (191)
.+...|+||++.+..+..+...+ |+|.||..||..++.. ...||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 35678999999998877665554 9999999999999862 236999 9987
No 62
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.75 E-value=1.6e-09 Score=87.45 Aligned_cols=54 Identities=24% Similarity=0.622 Sum_probs=40.8
Q ss_pred CCCCcCcccccccccCccE----EEcCCCCCcccHhhHHHHhcCC-----------CccccccccccCC
Q 029544 84 VEDAECSICLGEYQDKEVL----RIMPQCGHSFHLACIDIWLRKK-----------TTCPVCRLPLQDP 137 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~----~~~~~C~H~f~~~Ci~~wl~~~-----------~~CP~Cr~~~~~~ 137 (191)
+...+|+||++.+.+...+ ...+.|+|.||..|+.+|+... ..||.||.++..+
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 4567899999998873322 2233699999999999999732 3599999988644
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=5.2e-09 Score=66.92 Aligned_cols=45 Identities=24% Similarity=0.585 Sum_probs=37.3
Q ss_pred CCCcCcccccccccCccEEEcCCCCCc-ccHhhHHHHhcCCCccccccccccCC
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHS-FHLACIDIWLRKKTTCPVCRLPLQDP 137 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 137 (191)
++..|+||++.+.++..+ +|||. ||..|+... ..||+||.++...
T Consensus 24 ~~~~C~IC~~~~~~~~~~----pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFV----PCGHLVTCKQCAEAV----DKCPMCYTVITFK 69 (75)
T ss_dssp HHHSCSSSCSSCCCBCCS----SSCCCCBCHHHHHHC----SBCTTTCCBCCCC
T ss_pred CCCCCCcCCCCCCCEEEe----cCCCHHHHHHHhhCC----CCCccCCceecCc
Confidence 345799999999887766 69999 999999653 6799999988653
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.72 E-value=4.2e-09 Score=78.31 Aligned_cols=51 Identities=18% Similarity=0.210 Sum_probs=43.7
Q ss_pred CCCCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcC-CCccccccccccC
Q 029544 82 KSVEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK-KTTCPVCRLPLQD 136 (191)
Q Consensus 82 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~-~~~CP~Cr~~~~~ 136 (191)
.....+.|+||++.|.+|..+ +|||.||..||..|+.. ..+||+|+.++..
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~----~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCIT----PSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEEC----TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCcHhhcccCccccCCCCeEC----CCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 345678899999999999877 79999999999999985 3469999988864
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=6.9e-09 Score=65.15 Aligned_cols=47 Identities=23% Similarity=0.635 Sum_probs=37.4
Q ss_pred CCCCCcCcccccccccCccEEEcCCCCCc-ccHhhHHHHhcCCCccccccccccCC
Q 029544 83 SVEDAECSICLGEYQDKEVLRIMPQCGHS-FHLACIDIWLRKKTTCPVCRLPLQDP 137 (191)
Q Consensus 83 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 137 (191)
..+...|.||++...+...+ +|+|. ||..|+.. ...||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~----pCgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLL----PCRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEET----TTTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred CCCCCCCCCcCcCCCCEEEE----CCCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 34567899999987765444 69999 99999984 36799999988754
No 66
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.64 E-value=2.5e-08 Score=60.97 Aligned_cols=48 Identities=27% Similarity=0.740 Sum_probs=36.5
Q ss_pred CCCCcCcccccccccCccEEEcCCCC--C---cccHhhHHHHhc--CCCcccccccccc
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCG--H---SFHLACIDIWLR--KKTTCPVCRLPLQ 135 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~--H---~f~~~Ci~~wl~--~~~~CP~Cr~~~~ 135 (191)
++...|.||++...++ + .+| |. + .||..|+.+|+. .+.+||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~~--l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNE--R-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCC--C-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCc--e-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4566899999985443 2 344 65 4 899999999997 3577999998875
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.60 E-value=1.1e-08 Score=66.15 Aligned_cols=45 Identities=29% Similarity=0.672 Sum_probs=37.1
Q ss_pred CCCcCcccccccccCccEEEcCCCCCc-ccHhhHHHHhcCCCccccccccccCC
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHS-FHLACIDIWLRKKTTCPVCRLPLQDP 137 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 137 (191)
+...|+||++.+.+...+ +|||. ||..|+..| ..||+||..+...
T Consensus 17 ~~~~C~IC~~~~~~~v~~----pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFC----PCGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HHTBCTTTSSSBCCEEEE----TTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCCEeEEeCcccCcEEEE----CCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 345799999998876555 69999 999999877 4899999988753
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.60 E-value=1.7e-08 Score=78.86 Aligned_cols=50 Identities=24% Similarity=0.500 Sum_probs=41.5
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCC--Ccccc--ccccccC
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKK--TTCPV--CRLPLQD 136 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~--~~CP~--Cr~~~~~ 136 (191)
.....|+||++.|.++.... .|||.||..||..|+..+ ..||+ |+..+..
T Consensus 179 ~~el~CPIcl~~f~DPVts~---~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISR---KCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEES---SSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred ceeeECcCccCcccCCeeeC---CCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 34567999999999997642 699999999999999854 46999 9997754
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.48 E-value=3e-08 Score=81.06 Aligned_cols=45 Identities=24% Similarity=0.683 Sum_probs=38.7
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCc-ccHhhHHHHhcCCCccccccccccC
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHS-FHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
.++..|+||++.+.++..+ +|||. ||..|+..| ..||+||..+..
T Consensus 293 ~~~~~C~IC~~~~~~~v~l----pCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFI----PCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEE----TTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCceEEc----CCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 3567899999999887666 69999 999999988 679999998864
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.36 E-value=1e-07 Score=58.42 Aligned_cols=49 Identities=14% Similarity=0.251 Sum_probs=40.7
Q ss_pred CCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCC
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDP 137 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 137 (191)
.+.|+||++.+.++... +++||.|...||.+|+..+..||+.+.++...
T Consensus 3 ~~~CpIs~~~m~dPV~~---~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLS---PKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp -CCCTTTCSCCSSEEEE---TTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred eEEecCCCCCCCCCEEe---CCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 35799999999987443 24999999999999999878899999888643
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.18 E-value=1.1e-06 Score=58.29 Aligned_cols=47 Identities=28% Similarity=0.559 Sum_probs=35.5
Q ss_pred cCcccccccccCccEEEcCCCCCcccHhhHHHHhc-CCCccccccccccCC
Q 029544 88 ECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR-KKTTCPVCRLPLQDP 137 (191)
Q Consensus 88 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~-~~~~CP~Cr~~~~~~ 137 (191)
.|.+|--.+.. .-+.+| |+|+||.+|+..|.+ ..+.||.|+.++...
T Consensus 3 fC~~C~~Pi~i--ygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSE--EEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeEE--Eeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 36777655543 334454 999999999999975 567899999988754
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.93 E-value=9.3e-06 Score=63.00 Aligned_cols=50 Identities=22% Similarity=0.559 Sum_probs=40.4
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCC--ccccccccccCC
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKT--TCPVCRLPLQDP 137 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~--~CP~Cr~~~~~~ 137 (191)
....|.||.+....+... +.|+|.||..|+..|+..+. .||.|+..+...
T Consensus 179 ~i~~C~iC~~iv~~g~~C---~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSCEEC---SSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCCccc---CccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 366799999998876444 25999999999999998544 799999987654
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.84 E-value=0.0014 Score=42.75 Aligned_cols=52 Identities=25% Similarity=0.593 Sum_probs=40.4
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCCCCCC
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDPLGRK 141 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~ 141 (191)
.-..|-.|+-..+ ..+. -..|.+|..|+...+.....||+|++++.......
T Consensus 27 G~~nCKsCWf~~k--~LV~---C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~~ 78 (99)
T 2ko5_A 27 GPQFCKSCWFENK--GLVE---CNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRPS 78 (99)
T ss_dssp CCCCCCSSCSCCS--SEEE---CSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCTT
T ss_pred CcccChhhccccC--Ceee---ecchhhHHHHHHHHHhhccCCcccCCcCCcceecC
Confidence 4556999997654 3442 24599999999999999999999999998765543
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.40 E-value=0.0096 Score=39.38 Aligned_cols=35 Identities=20% Similarity=0.422 Sum_probs=25.5
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHH
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIW 120 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w 120 (191)
++..|.||.+.+..+....-+ .|+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~-~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCV-TCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEET-TTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECC-cCChHHhHHHCHHH
Confidence 356799999875433333334 59999999999984
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.71 E-value=0.039 Score=33.73 Aligned_cols=47 Identities=23% Similarity=0.490 Sum_probs=32.6
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCC----Cccccccccc
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKK----TTCPVCRLPL 134 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~----~~CP~Cr~~~ 134 (191)
.....|.||.+. +..+ .-..|...||..|+.+.+... -.||.|....
T Consensus 10 ~~~~~C~vC~~~---~~ll-~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDG---TDVL-RCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCC---TTCE-ECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCCC---CeEE-ECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 445679999753 3333 334689999999998877633 3599997543
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=91.69 E-value=0.092 Score=31.62 Aligned_cols=50 Identities=26% Similarity=0.514 Sum_probs=33.6
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhc-----CCCcccccccc
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR-----KKTTCPVCRLP 133 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~-----~~~~CP~Cr~~ 133 (191)
.+...|++|...+.+....+.-..|...||..|+.--.. ....||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 456679999988865444444446888999999753221 33459999753
No 77
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=91.46 E-value=0.71 Score=25.63 Aligned_cols=8 Identities=25% Similarity=0.289 Sum_probs=3.0
Q ss_pred HHHHHhhc
Q 029544 27 TRIICRRI 34 (191)
Q Consensus 27 ~~~~~~r~ 34 (191)
..++.+|+
T Consensus 30 ~~~~~RRR 37 (44)
T 2l2t_A 30 FAVYVRRK 37 (44)
T ss_dssp HHHHHHTT
T ss_pred HHHHhhhh
Confidence 33333333
No 78
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=91.03 E-value=0.2 Score=29.86 Aligned_cols=45 Identities=24% Similarity=0.654 Sum_probs=30.9
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcC----CCccccccc
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK----KTTCPVCRL 132 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~----~~~CP~Cr~ 132 (191)
.++..|.+|... + .+..-..|...||..|+..-+.. .-.||.|+.
T Consensus 9 ~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC---C-cEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 456679999873 3 33334468889999999875442 234999975
No 79
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=88.86 E-value=1.1 Score=28.52 Aligned_cols=35 Identities=23% Similarity=0.488 Sum_probs=22.9
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHH
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIW 120 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w 120 (191)
..+..|.||-.-- ......-- -|+-+||..|+.+-
T Consensus 13 ~~D~~C~VC~~~t-~~~l~pCR-vC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEVWT-AESLFPCR-VCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCCCC-SSCCSSCS-SSSSCCCHHHHHHH
T ss_pred CCCcccCcccccc-ccceeccc-cccccccHhhcccc
Confidence 3677899997432 22222111 48999999999986
No 80
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=88.70 E-value=0.14 Score=31.78 Aligned_cols=52 Identities=17% Similarity=0.359 Sum_probs=34.5
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcC----CCccccccccccCC
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK----KTTCPVCRLPLQDP 137 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~----~~~CP~Cr~~~~~~ 137 (191)
+...|.+|..... +..+.....|...||..|+..-... .-.||.|+..+...
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD 72 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhc
Confidence 4456999987754 3333334458889999998754432 33599998776543
No 81
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=88.67 E-value=0.15 Score=30.47 Aligned_cols=47 Identities=28% Similarity=0.625 Sum_probs=30.7
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcC----CCccccccccc
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK----KTTCPVCRLPL 134 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~----~~~CP~Cr~~~ 134 (191)
.++..|.+|.+. +..+ .-..|...||..|+.+-+.. .-.||.|+...
T Consensus 7 ~~~~~C~vC~~~---g~ll-~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELL-CCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---SSCB-CCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---CCEE-EcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 456679999863 2333 23358889999999864442 23499997543
No 82
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=88.58 E-value=1.2 Score=28.08 Aligned_cols=39 Identities=18% Similarity=0.390 Sum_probs=30.1
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhc
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR 122 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~ 122 (191)
.....|.+|.+.+++...+..-..=.|.||..|-+..++
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHH
Confidence 456789999999999888732112268999999998887
No 83
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=87.25 E-value=0.37 Score=27.41 Aligned_cols=44 Identities=27% Similarity=0.782 Sum_probs=28.3
Q ss_pred cCcccccccccCccEEEcCCCCCcccHhhHHHHhcC----CCccccccc
Q 029544 88 ECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK----KTTCPVCRL 132 (191)
Q Consensus 88 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~----~~~CP~Cr~ 132 (191)
.|.+|...-.....+ .-..|...||..|+.+=+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll-~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLI-LCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCE-ECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEE-ECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 378887654433344 33358899999999764442 224998864
No 84
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=86.70 E-value=0.48 Score=30.49 Aligned_cols=52 Identities=27% Similarity=0.481 Sum_probs=34.5
Q ss_pred CCCCcCccccccc-ccCccEEEcCCCCCcccHhhHHHHhc--CCCcccccccccc
Q 029544 84 VEDAECSICLGEY-QDKEVLRIMPQCGHSFHLACIDIWLR--KKTTCPVCRLPLQ 135 (191)
Q Consensus 84 ~~~~~C~IC~~~~-~~~~~~~~~~~C~H~f~~~Ci~~wl~--~~~~CP~Cr~~~~ 135 (191)
.++..|.||...- .+...+.....|.-.||..|+..-.. ..-.||.|.....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 4567899999753 23334444456888999999975432 2334999976543
No 85
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=86.31 E-value=0.24 Score=37.08 Aligned_cols=47 Identities=26% Similarity=0.439 Sum_probs=32.6
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcC----CCccccccccc
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK----KTTCPVCRLPL 134 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~----~~~CP~Cr~~~ 134 (191)
.++..|.+|... + .+.....|...||..|+.+-+.. .-.||.|+..-
T Consensus 5 ~~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNG---G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCC---E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC---C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 456679999853 2 24444468899999999776552 23599998644
No 86
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=86.30 E-value=0.23 Score=36.45 Aligned_cols=46 Identities=28% Similarity=0.585 Sum_probs=31.7
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcC----CCccccccccc
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK----KTTCPVCRLPL 134 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~----~~~CP~Cr~~~ 134 (191)
++..|.+|.+. +..+ ....|...||..|+.+-+.. .-.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~ll-~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GELL-CCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SSCE-ECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---Ceee-ecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 45679999854 3333 33458899999998776553 23499998644
No 87
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=85.53 E-value=0.35 Score=29.28 Aligned_cols=46 Identities=30% Similarity=0.698 Sum_probs=31.2
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcC----CCcccccccc
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK----KTTCPVCRLP 133 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~----~~~CP~Cr~~ 133 (191)
.++..|.+|.+. +..+ .-..|...||..|+.+-+.. .-.||.|...
T Consensus 6 ~~~~~C~vC~~~---g~ll-~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELI-CCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---SSCE-ECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---CCEE-EcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 456779999864 3333 33358889999999864442 2349999754
No 88
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=84.99 E-value=0.15 Score=30.28 Aligned_cols=48 Identities=27% Similarity=0.699 Sum_probs=32.0
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcC----CCcccccccccc
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK----KTTCPVCRLPLQ 135 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~----~~~CP~Cr~~~~ 135 (191)
.++..|.+|... +..+ .-..|...||..|+.+-+.. .-.||.|.....
T Consensus 3 ~~~~~C~vC~~~---g~ll-~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 3 IHEDFCSVCRKS---GQLL-MCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCCSSCTTTCCC---SSCE-ECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCCcCCCCC---CcEE-EcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 356679999874 3333 33358889999999865442 234999976554
No 89
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=84.79 E-value=0.65 Score=27.56 Aligned_cols=43 Identities=26% Similarity=0.583 Sum_probs=30.6
Q ss_pred CcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccc
Q 029544 87 AECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVC 130 (191)
Q Consensus 87 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~C 130 (191)
..|-.|...+.+.. ...-+.|++.||.+|=.-.-..-..||-|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccchhHHHHhhccCCcCC
Confidence 35888998886433 23456899999999954444455679988
No 90
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=84.73 E-value=3.5 Score=22.78 Aligned_cols=7 Identities=43% Similarity=1.047 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 029544 8 LITTVIG 14 (191)
Q Consensus 8 ~v~~~i~ 14 (191)
+..++++
T Consensus 14 Ia~~vVG 20 (44)
T 2jwa_A 14 IISAVVG 20 (44)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 3333344
No 91
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=84.50 E-value=0.18 Score=34.52 Aligned_cols=51 Identities=14% Similarity=0.360 Sum_probs=33.6
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCcccccccccc
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQ 135 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~ 135 (191)
....|..|...|..-..-.....||.+||..|..........|-.|...+.
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~~ 68 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFRA 68 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHHh
Confidence 345799999988765444444479999999997665555667888876543
No 92
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=84.46 E-value=0.61 Score=28.71 Aligned_cols=51 Identities=27% Similarity=0.494 Sum_probs=33.5
Q ss_pred CCCCCcCccccccc-ccCccEEEcCCCCCcccHhhHHHHhc--CCCcccccccc
Q 029544 83 SVEDAECSICLGEY-QDKEVLRIMPQCGHSFHLACIDIWLR--KKTTCPVCRLP 133 (191)
Q Consensus 83 ~~~~~~C~IC~~~~-~~~~~~~~~~~C~H~f~~~Ci~~wl~--~~~~CP~Cr~~ 133 (191)
..++..|.||...- .+...+..-..|.-.||..|+..-.. ..-.||.|+..
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 34567799998753 33344445556889999999875332 22348888653
No 93
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=84.13 E-value=1.7 Score=27.14 Aligned_cols=51 Identities=22% Similarity=0.439 Sum_probs=32.4
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHH---h--cCCCccccccccccC
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIW---L--RKKTTCPVCRLPLQD 136 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w---l--~~~~~CP~Cr~~~~~ 136 (191)
+...| ||...+......+....|...||..|+.-- . .....||.|+.....
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~ 66 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP 66 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccCC
Confidence 34456 898877534334344458899999998421 1 134569999876543
No 94
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.03 E-value=0.2 Score=29.30 Aligned_cols=45 Identities=29% Similarity=0.691 Sum_probs=29.6
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcC----CCccccccc
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK----KTTCPVCRL 132 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~----~~~CP~Cr~ 132 (191)
.++..|.+|... +..+ .-..|...||..|+.+-+.. .-.||.|..
T Consensus 7 ~~~~~C~vC~~~---g~ll-~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLL-MCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SCCE-ECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---CeEE-EcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 456679999874 3333 33358889999999865442 223888853
No 95
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=83.97 E-value=0.95 Score=27.30 Aligned_cols=34 Identities=26% Similarity=0.505 Sum_probs=25.0
Q ss_pred CCCCcCcccccccccCccEEEcC-CCCCcccHhhH
Q 029544 84 VEDAECSICLGEYQDKEVLRIMP-QCGHSFHLACI 117 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~-~C~H~f~~~Ci 117 (191)
.....|.+|...+......+... .|.-.||..|+
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 44567999999987766665554 68889999997
No 96
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=83.55 E-value=0.72 Score=42.26 Aligned_cols=51 Identities=18% Similarity=0.215 Sum_probs=43.9
Q ss_pred CCCCCCcCcccccccccCccEEEcCCCC-CcccHhhHHHHhcCCCccccccccccC
Q 029544 82 KSVEDAECSICLGEYQDKEVLRIMPQCG-HSFHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 82 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~-H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
...+.+.|+|-++.+.+|+.+ +-| +.|-..+|.+|+..+.+||+=|.++..
T Consensus 887 ~iP~~F~cPIs~~lM~DPVil----psG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVIL----PASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEEC----TTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCcHHhCCcchhhHHhCCeEc----CCCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 335567899999999999888 687 589999999999998899999988864
No 97
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=82.45 E-value=1.7 Score=27.50 Aligned_cols=37 Identities=14% Similarity=0.225 Sum_probs=27.0
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHH
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIW 120 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w 120 (191)
.+...|.+|...|..-..-..-..||++||..|....
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 3455799999998765444344479999999997553
No 98
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.89 E-value=0.62 Score=30.20 Aligned_cols=49 Identities=24% Similarity=0.611 Sum_probs=32.9
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcC----CCcccccccc
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK----KTTCPVCRLP 133 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~----~~~CP~Cr~~ 133 (191)
.++..|.||...-.....+ ....|...||..|+.+-+.. .-.||.|...
T Consensus 14 ~~~~~C~vC~~~~~~~~ll-~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLL-FCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCE-ECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCCCEE-EcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3456799999865443344 33358899999999754432 2349999764
No 99
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=81.80 E-value=0.91 Score=28.11 Aligned_cols=48 Identities=23% Similarity=0.508 Sum_probs=31.2
Q ss_pred CCcCcccccccccCccEEEcCCCCCcccHhhHHHH---------hcCCCcccccccccc
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIW---------LRKKTTCPVCRLPLQ 135 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w---------l~~~~~CP~Cr~~~~ 135 (191)
...| ||.........+. -..|...||..|+.-- ......||.|+..-.
T Consensus 16 ~~~C-~C~~~~~~~~MI~-Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMIC-CDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp CCCS-TTCCCCCSSCEEE-CSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CCEE-ECCCccCCCCEEE-eCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 4557 8988766444443 3358899999997421 124566999986543
No 100
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=81.18 E-value=0.74 Score=30.17 Aligned_cols=45 Identities=22% Similarity=0.437 Sum_probs=30.2
Q ss_pred CCcCcccccccccCccEEEcCCCCCcccHhhHHHHhc---CCCccccccc
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR---KKTTCPVCRL 132 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~---~~~~CP~Cr~ 132 (191)
...| ||......+..+. ...|...||..|+..-.. ..-.||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~mi~-Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMIC-CDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSCEEE-BTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCcEEE-cCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3457 8887766655553 335889999999865322 2345999973
No 101
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=80.92 E-value=0.47 Score=29.19 Aligned_cols=49 Identities=27% Similarity=0.358 Sum_probs=31.3
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHHh----cCCCccccccccc
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWL----RKKTTCPVCRLPL 134 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl----~~~~~CP~Cr~~~ 134 (191)
+...| ||......+...+....|...||..|+.--. .....||.|+..-
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 44568 7988765554343444588899999975321 2334599997644
No 102
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=80.09 E-value=3.5 Score=24.81 Aligned_cols=15 Identities=13% Similarity=0.107 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 029544 11 TVIGFGMSAAFIVFI 25 (191)
Q Consensus 11 ~~i~~~~~~~li~~~ 25 (191)
++++.++++++++.+
T Consensus 12 ivlGg~~~lll~~gl 26 (70)
T 2klu_A 12 IVLGGVAGLLLFIGL 26 (70)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHH
Confidence 455555554433333
No 103
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=80.02 E-value=1.2 Score=32.17 Aligned_cols=49 Identities=20% Similarity=0.471 Sum_probs=32.4
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHh-----cCCCcccccccc
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWL-----RKKTTCPVCRLP 133 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl-----~~~~~CP~Cr~~ 133 (191)
.+...| +|...............|...||..|+.--. ...-.||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 455678 9998765444444444688999999984211 234569999864
No 104
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=79.95 E-value=1.5 Score=27.60 Aligned_cols=37 Identities=24% Similarity=0.415 Sum_probs=26.7
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHH
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIW 120 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w 120 (191)
.+...|.+|...|..-..-..-..||.+||..|....
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 3445799999998765444344479999999997543
No 105
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=79.83 E-value=0.78 Score=30.63 Aligned_cols=47 Identities=26% Similarity=0.623 Sum_probs=30.4
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcC----CCcccccc
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK----KTTCPVCR 131 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~----~~~CP~Cr 131 (191)
.++..|.+|.+.-.....+.- ..|...||..|+...+.. .-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C-~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFC-TTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEEC-SSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeEC-CCCCCCcChHHhCCccccccccCccCCcCC
Confidence 456789999876443333433 359999999999876542 22366554
No 106
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=79.38 E-value=1.7 Score=27.94 Aligned_cols=50 Identities=18% Similarity=0.406 Sum_probs=33.5
Q ss_pred CCcCcccccccccCccEEEcCCCCCcccHhhHHHHhc------CCCcccccccccc
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR------KKTTCPVCRLPLQ 135 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~------~~~~CP~Cr~~~~ 135 (191)
...|.+|...|..-..-.....||++||..|...... ....|-.|-..+.
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 75 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETIS 75 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHH
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHH
Confidence 4569999998876544444447999999999765432 2234777765554
No 107
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=79.33 E-value=1.6 Score=26.80 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=24.4
Q ss_pred CcCcccccccccCccEEEcCCCCCcccHhhHHH
Q 029544 87 AECSICLGEYQDKEVLRIMPQCGHSFHLACIDI 119 (191)
Q Consensus 87 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~ 119 (191)
..|.+|...|..-..-..-..||.+||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 479999998876543333447999999999643
No 108
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.85 E-value=1.7 Score=27.52 Aligned_cols=35 Identities=23% Similarity=0.477 Sum_probs=25.1
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHH
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACID 118 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~ 118 (191)
.+...|.+|...|..-..-..-..||.+||..|..
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 34557999999987554333334799999999954
No 109
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=78.83 E-value=1.9 Score=27.65 Aligned_cols=53 Identities=17% Similarity=0.354 Sum_probs=35.7
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhc-------CCCccccccccccC
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR-------KKTTCPVCRLPLQD 136 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~-------~~~~CP~Cr~~~~~ 136 (191)
.+...|.+|...|..-..-.....||.+||..|....+. ....|-.|...+..
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~ 66 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTR 66 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHH
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHh
Confidence 345579999999886654444447999999999754321 22348778766553
No 110
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=78.40 E-value=2 Score=24.46 Aligned_cols=44 Identities=20% Similarity=0.397 Sum_probs=27.8
Q ss_pred cCcccccccccCccEEEcC-CCCCcccHhhHHHH----hcCCCcccccc
Q 029544 88 ECSICLGEYQDKEVLRIMP-QCGHSFHLACIDIW----LRKKTTCPVCR 131 (191)
Q Consensus 88 ~C~IC~~~~~~~~~~~~~~-~C~H~f~~~Ci~~w----l~~~~~CP~Cr 131 (191)
.|.+|...+.+....+.-. .|...||..|+.-- ......||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 3678888876555444444 48889999996421 12445688875
No 111
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=78.17 E-value=0.67 Score=31.11 Aligned_cols=45 Identities=27% Similarity=0.653 Sum_probs=28.5
Q ss_pred cCcccccccccCccEEEcCCCCCcccHhhHHHHhcC----CCccccccc
Q 029544 88 ECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK----KTTCPVCRL 132 (191)
Q Consensus 88 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~----~~~CP~Cr~ 132 (191)
.|.+|...-.+...+..-..|...||..|+.+-+.. .-.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 467787643333334344468899999998765542 234888874
No 112
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=78.04 E-value=0.68 Score=37.78 Aligned_cols=46 Identities=17% Similarity=0.316 Sum_probs=30.1
Q ss_pred CcCcccccccccCccEEEcCCCCCcccHh--hHHHHhc--CCCcccccccccc
Q 029544 87 AECSICLGEYQDKEVLRIMPQCGHSFHLA--CIDIWLR--KKTTCPVCRLPLQ 135 (191)
Q Consensus 87 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~--Ci~~wl~--~~~~CP~Cr~~~~ 135 (191)
..|++-...+..+..-. .|.|.-|.+ -+..... ..-.||+|...+.
T Consensus 250 L~CPlS~~ri~~PvRg~---~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 250 LQCPISYTRMKYPSKSI---NCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp SBCTTTSSBCSSEEEET---TCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred ecCCCccccccccCcCC---cCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 46998888877765553 699984433 3333322 3345999998774
No 113
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=77.93 E-value=1.3 Score=30.44 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=25.0
Q ss_pred CCcCcccccccccCccEEEcCCCCCcccHhhHHH
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGHSFHLACIDI 119 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~ 119 (191)
...|.+|...|..-..-.....||++||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 3469999999876544334447999999999644
No 114
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=77.73 E-value=3.5 Score=28.91 Aligned_cols=46 Identities=24% Similarity=0.400 Sum_probs=31.8
Q ss_pred CCCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhc-----------CCCccccccc
Q 029544 83 SVEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR-----------KKTTCPVCRL 132 (191)
Q Consensus 83 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~-----------~~~~CP~Cr~ 132 (191)
+..+..|.+|-+- + .+.....|-..||..|+.+-+. ..-.||+|+.
T Consensus 60 Dg~~d~C~vC~~G---G-~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---G-NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCC---S-SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCC---C-cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 4456789999863 2 3333346889999999997653 2335999974
No 115
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=76.97 E-value=1.4 Score=23.78 Aligned_cols=6 Identities=17% Similarity=0.291 Sum_probs=2.2
Q ss_pred HHHHhh
Q 029544 28 RIICRR 33 (191)
Q Consensus 28 ~~~~~r 33 (191)
.++++|
T Consensus 33 ~~~~~r 38 (41)
T 2k9y_A 33 GFFIHR 38 (41)
T ss_dssp HHSSSS
T ss_pred heeEee
Confidence 333333
No 116
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=76.68 E-value=2.1 Score=27.46 Aligned_cols=47 Identities=23% Similarity=0.594 Sum_probs=32.0
Q ss_pred CCCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcC----CCcccccccc
Q 029544 83 SVEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK----KTTCPVCRLP 133 (191)
Q Consensus 83 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~----~~~CP~Cr~~ 133 (191)
..++..|.+|... +..+ ....|.-.||..|+.+=+.. .-.||.|+..
T Consensus 22 d~n~~~C~vC~~~---g~LL-~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP---GDLV-MCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS---SCCE-ECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC---CCEE-ECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3456679999964 2333 33358889999999776543 2349999753
No 117
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=76.12 E-value=2 Score=26.71 Aligned_cols=48 Identities=19% Similarity=0.482 Sum_probs=30.3
Q ss_pred CCCcCcccccccccCccEEEcC--CCCCcccHhhHHHHh---------cCCCccccccccc
Q 029544 85 EDAECSICLGEYQDKEVLRIMP--QCGHSFHLACIDIWL---------RKKTTCPVCRLPL 134 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~--~C~H~f~~~Ci~~wl---------~~~~~CP~Cr~~~ 134 (191)
+...| ||......+..+ ..- .|...||..|+.--- .....||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g~MI-~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMI-QCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSCEE-ECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCCEE-EECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 44567 788875455444 332 488899999984321 1244599998644
No 118
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=75.00 E-value=5 Score=27.63 Aligned_cols=46 Identities=24% Similarity=0.403 Sum_probs=31.0
Q ss_pred CCCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhc-----------CCCccccccc
Q 029544 83 SVEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR-----------KKTTCPVCRL 132 (191)
Q Consensus 83 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~-----------~~~~CP~Cr~ 132 (191)
+..+..|.+|.+- ..+..-..|-..||..|+.+-+. ..-.|++|+.
T Consensus 54 Dg~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 4456679999853 23333336889999999997521 2345999964
No 119
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=74.33 E-value=1.7 Score=32.66 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=25.5
Q ss_pred CCcCcccccccccCccEEEcCCCCCcccHhhHHH
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGHSFHLACIDI 119 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~ 119 (191)
+..|.+|...|..-..-.....||++||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 4689999999875544444447999999999654
No 120
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=73.93 E-value=1.8 Score=35.17 Aligned_cols=46 Identities=20% Similarity=0.204 Sum_probs=30.1
Q ss_pred CcCcccccccccCccEEEcCCCCCc--ccHhhHHHHhc--CCCcccccccccc
Q 029544 87 AECSICLGEYQDKEVLRIMPQCGHS--FHLACIDIWLR--KKTTCPVCRLPLQ 135 (191)
Q Consensus 87 ~~C~IC~~~~~~~~~~~~~~~C~H~--f~~~Ci~~wl~--~~~~CP~Cr~~~~ 135 (191)
..|++-...+..+..-. .|.|. |-..-+..... ..-.||+|.+.+.
T Consensus 216 L~CPlS~~ri~~P~Rg~---~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLTIPCRAV---TCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCSSEEEET---TCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeCCCccceeccCCcCC---CCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 45998888877765543 69998 44443333333 3345999998774
No 121
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=73.40 E-value=2 Score=32.55 Aligned_cols=50 Identities=20% Similarity=0.402 Sum_probs=33.3
Q ss_pred CCcCcccccccccCccEEEcCCCCCcccHhhHHHHhc--------CCCcccccccccc
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR--------KKTTCPVCRLPLQ 135 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~--------~~~~CP~Cr~~~~ 135 (191)
+..|.+|...|..-..-.....||++||..|-..... ....|-.|-..+.
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~ 221 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLN 221 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHC
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhh
Confidence 4579999998886544444447999999999764322 1234766765543
No 122
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=72.79 E-value=2.8 Score=27.02 Aligned_cols=45 Identities=31% Similarity=0.631 Sum_probs=27.2
Q ss_pred CCCcCcccccccccCccEEEcCC--CC-CcccHhhHHHHhc----CCCccccccccc
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQ--CG-HSFHLACIDIWLR----KKTTCPVCRLPL 134 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~--C~-H~f~~~Ci~~wl~----~~~~CP~Cr~~~ 134 (191)
+...| ||..... +..+ .... |. ..||..|+. +. ..-.||.|+...
T Consensus 35 e~~yC-iC~~~~~-g~MI-~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMI-GCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC-SCCC-CCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC-CCEe-EecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 44457 9988643 3333 2223 55 589999986 33 233599997644
No 123
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=72.69 E-value=1.1 Score=28.80 Aligned_cols=52 Identities=15% Similarity=0.318 Sum_probs=35.1
Q ss_pred CCCcCccccccccc-CccEEEcCCCCCcccHhhHHHHhc--------CCCccccccccccC
Q 029544 85 EDAECSICLGEYQD-KEVLRIMPQCGHSFHLACIDIWLR--------KKTTCPVCRLPLQD 136 (191)
Q Consensus 85 ~~~~C~IC~~~~~~-~~~~~~~~~C~H~f~~~Ci~~wl~--------~~~~CP~Cr~~~~~ 136 (191)
.+..|.+|...-.. ...+.....|...||..|+.+-+. ..-.|+.|+.....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 35579999976432 234444556899999999986543 23359999876543
No 124
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=72.07 E-value=4.6 Score=24.65 Aligned_cols=45 Identities=31% Similarity=0.631 Sum_probs=27.2
Q ss_pred CCCcCcccccccccCccEEEcCC--CC-CcccHhhHHHHhc----CCCccccccccc
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQ--CG-HSFHLACIDIWLR----KKTTCPVCRLPL 134 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~--C~-H~f~~~Ci~~wl~----~~~~CP~Cr~~~ 134 (191)
+..-| ||..... +..+ .-.. |. ..||..|+. +. ..-.||.|+..-
T Consensus 15 ~~~~C-~C~~~~~-g~MI-~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMI-GCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SSEE-CCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CCEe-EeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 44557 8987543 3333 2223 55 589999986 33 223499997643
No 125
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=70.61 E-value=3.1 Score=27.52 Aligned_cols=50 Identities=22% Similarity=0.450 Sum_probs=33.0
Q ss_pred CCcCcccccccccCccEEEcC-CCCCcccHhhHHHH------h----cCCCcccccccccc
Q 029544 86 DAECSICLGEYQDKEVLRIMP-QCGHSFHLACIDIW------L----RKKTTCPVCRLPLQ 135 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~-~C~H~f~~~Ci~~w------l----~~~~~CP~Cr~~~~ 135 (191)
...|.+|...+.+.......- .|...||..|+.-- + ...-.||.|+....
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 456999999886654444443 58889999997311 1 02345999987543
No 126
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=70.46 E-value=6.8 Score=26.01 Aligned_cols=34 Identities=35% Similarity=0.657 Sum_probs=22.6
Q ss_pred CCCcCccccccc-----ccCccEEEcCCCCCcccHhhHH
Q 029544 85 EDAECSICLGEY-----QDKEVLRIMPQCGHSFHLACID 118 (191)
Q Consensus 85 ~~~~C~IC~~~~-----~~~~~~~~~~~C~H~f~~~Ci~ 118 (191)
....|.+|+..- ..+..+..-..|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 455699998652 1233344444699999999995
No 127
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=69.83 E-value=3.2 Score=24.67 Aligned_cols=50 Identities=26% Similarity=0.623 Sum_probs=33.4
Q ss_pred CCCCcCcccccccc-cCccEEEcCCCCCcccHhhHHHHhc-------CCCcccccccc
Q 029544 84 VEDAECSICLGEYQ-DKEVLRIMPQCGHSFHLACIDIWLR-------KKTTCPVCRLP 133 (191)
Q Consensus 84 ~~~~~C~IC~~~~~-~~~~~~~~~~C~H~f~~~Ci~~wl~-------~~~~CP~Cr~~ 133 (191)
.++..|.+|..... ....+..-..|...||..|+.+-+. ..-.|+.|...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 45667999997643 2334444556899999999876332 23359999754
No 128
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=68.28 E-value=5.9 Score=27.12 Aligned_cols=34 Identities=12% Similarity=0.122 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 029544 6 MNLITTVIGFGMSAAFIVFICTRIICRRIRGVES 39 (191)
Q Consensus 6 ~~~v~~~i~~~~~~~li~~~~~~~~~~r~~~~~~ 39 (191)
+.++++++.+++..+|++.+++.++..|++....
T Consensus 51 ~~ylYIL~vmgffgff~~GImLsYiRSKk~E~s~ 84 (138)
T 2k21_A 51 LEALYVLMVLGFFGFFTLGIMLSYIRSKKLEHSN 84 (138)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred ceeehHHHHHHHHHHHHHHHHHHHhHhhhccccC
Confidence 4556666666666777788878887776665443
No 129
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=67.83 E-value=1.3 Score=32.53 Aligned_cols=44 Identities=25% Similarity=0.651 Sum_probs=29.1
Q ss_pred CCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcC----CCcccccccc
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK----KTTCPVCRLP 133 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~----~~~CP~Cr~~ 133 (191)
+..|.+|... +..+ ....|...||..|+.+=+.. .-.||.|+..
T Consensus 2 ~~~C~~C~~~---g~ll-~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLV-MCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCC-CCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---Ccee-ECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 3469999854 2233 23358889999999765442 2349999865
No 130
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=67.35 E-value=8.3 Score=20.47 Aligned_cols=16 Identities=19% Similarity=0.447 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 029544 9 ITTVIGFGMSAAFIVF 24 (191)
Q Consensus 9 v~~~i~~~~~~~li~~ 24 (191)
.-++++.+++++++..
T Consensus 14 AGiVvG~v~gv~li~~ 29 (38)
T 2k1k_A 14 VAVIFGLLLGAALLLG 29 (38)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHH
Confidence 3344444444444333
No 131
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=67.21 E-value=8 Score=24.17 Aligned_cols=40 Identities=20% Similarity=0.401 Sum_probs=28.6
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccC
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
....|.-|-..+.... +. .-+..||.+| ..|-.|+..|..
T Consensus 24 ~~~~C~~C~~~I~~~~-~~---a~~~~~H~~C--------F~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVGAV-VK---ARDKYRHPEC--------FVCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCSCC-EE---SSSCEECTTT--------CCCSSSCCCTTT
T ss_pred cCCCcccCCCEecccE-EE---ECCceECccC--------CEecCCCCCCCC
Confidence 3457999998877532 32 4678899888 568888888754
No 132
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=66.50 E-value=5.2 Score=24.10 Aligned_cols=33 Identities=27% Similarity=0.482 Sum_probs=24.6
Q ss_pred CCCCCcCcccccccccCccEEEcCCC-CCcccHhhHHHH
Q 029544 83 SVEDAECSICLGEYQDKEVLRIMPQC-GHSFHLACIDIW 120 (191)
Q Consensus 83 ~~~~~~C~IC~~~~~~~~~~~~~~~C-~H~f~~~Ci~~w 120 (191)
.++..-|.||.++ ..++-+. | +-.||..|+.+.
T Consensus 5 ~ee~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 5 SSGLPWCCICNED----ATLRCAG-CDGDLYCARCFREG 38 (67)
T ss_dssp CCCCSSCTTTCSC----CCEEETT-TTSEEECSSHHHHH
T ss_pred CcCCCeeEEeCCC----CeEEecC-CCCceehHHHHHHH
Confidence 3455669999987 3366664 8 779999998875
No 133
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=66.30 E-value=1.9 Score=26.12 Aligned_cols=47 Identities=21% Similarity=0.566 Sum_probs=29.4
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhc---CCCccccccc
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR---KKTTCPVCRL 132 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~---~~~~CP~Cr~ 132 (191)
.+...| ||.........+. -..|...||..|+.--.. ..-.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~~~MIq-Cd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIE-CNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEE-CTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEEE-CCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 345567 9988765434443 335888999999753221 2345888864
No 134
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=65.65 E-value=24 Score=22.59 Aligned_cols=55 Identities=20% Similarity=0.464 Sum_probs=35.9
Q ss_pred CCCcCccccccccc---CccEEEcCCCCCcccHhhHHHHhc-CCCccccccccccCCCC
Q 029544 85 EDAECSICLGEYQD---KEVLRIMPQCGHSFHLACIDIWLR-KKTTCPVCRLPLQDPLG 139 (191)
Q Consensus 85 ~~~~C~IC~~~~~~---~~~~~~~~~C~H~f~~~Ci~~wl~-~~~~CP~Cr~~~~~~~~ 139 (191)
....|.||-++... +....-.-.|+--.|..|.+-=.. .+..||.|+..+...++
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~kg 73 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRG 73 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTT
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccccC
Confidence 34579999998543 222221124666789999875444 56679999998875443
No 135
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=65.07 E-value=1.4 Score=27.48 Aligned_cols=43 Identities=30% Similarity=0.699 Sum_probs=26.5
Q ss_pred CcccccccccCccEEEcCCCCCcccHhhHHHHhcC----C-Cccccccc
Q 029544 89 CSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK----K-TTCPVCRL 132 (191)
Q Consensus 89 C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~----~-~~CP~Cr~ 132 (191)
|.+|...-... .+..-..|...||..|+.+-|.. . -.||.|+.
T Consensus 29 C~vC~~~~d~~-~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 29 CHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp BTTTCCCSCGG-GEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCccCCCCCCc-ceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 55666554333 34344458899999999865542 1 35888874
No 136
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=64.56 E-value=3.2 Score=35.16 Aligned_cols=49 Identities=20% Similarity=0.482 Sum_probs=31.0
Q ss_pred CcCcccccccccCccEEEcCCCCCcccHhhHHHHhc-----CCCccccccccccC
Q 029544 87 AECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR-----KKTTCPVCRLPLQD 136 (191)
Q Consensus 87 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~-----~~~~CP~Cr~~~~~ 136 (191)
..| +|...+...........|.-.||..|+.---. ..-.||.|+.....
T Consensus 38 ~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~ 91 (488)
T 3kv5_D 38 VYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHGS 91 (488)
T ss_dssp EET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHHCS
T ss_pred eEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCcCc
Confidence 345 89887653443444446999999999843211 23459999975543
No 137
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=64.20 E-value=1.4 Score=36.33 Aligned_cols=50 Identities=16% Similarity=0.196 Sum_probs=0.0
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhc-------CCCccccccccc
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR-------KKTTCPVCRLPL 134 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~-------~~~~CP~Cr~~~ 134 (191)
....|.+|...|.....-.....||++||..|....+. ....|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 34579999998875433223337999999999866542 223477775544
No 138
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=63.88 E-value=0.78 Score=23.99 Aligned_cols=17 Identities=18% Similarity=0.440 Sum_probs=11.5
Q ss_pred CCcCcccccccccCccE
Q 029544 86 DAECSICLGEYQDKEVL 102 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~ 102 (191)
.+.|++|+..+.....+
T Consensus 5 GFiCP~C~~~l~s~~~L 21 (34)
T 3mjh_B 5 GFICPQCMKSLGSADEL 21 (34)
T ss_dssp EEECTTTCCEESSHHHH
T ss_pred ccCCcHHHHHcCCHHHH
Confidence 46788888777665544
No 139
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=63.61 E-value=5.1 Score=29.32 Aligned_cols=49 Identities=22% Similarity=0.459 Sum_probs=33.8
Q ss_pred CcCcccccccccCcc---EEEcCCCCCcccHhhHHH------Hhc-----CCCcccccccccc
Q 029544 87 AECSICLGEYQDKEV---LRIMPQCGHSFHLACIDI------WLR-----KKTTCPVCRLPLQ 135 (191)
Q Consensus 87 ~~C~IC~~~~~~~~~---~~~~~~C~H~f~~~Ci~~------wl~-----~~~~CP~Cr~~~~ 135 (191)
..|+||...|.+... .+....|...||..|..- -+. ..-.||.|+..-.
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 359999999887752 444446899999999632 111 1456999987543
No 140
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.46 E-value=2 Score=26.83 Aligned_cols=44 Identities=27% Similarity=0.716 Sum_probs=28.4
Q ss_pred cCcccccccccCccEEEcCCCCCcccHhhHHHHhcC-----CCccccccc
Q 029544 88 ECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK-----KTTCPVCRL 132 (191)
Q Consensus 88 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~-----~~~CP~Cr~ 132 (191)
.|.+|...-.....+ .-..|...||..|+.+-+.. .-.||.|..
T Consensus 28 ~C~vC~~~~~~~~ll-~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQL-LCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEE-ECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEE-EcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 578888653333344 44468899999999854431 234888864
No 141
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=60.91 E-value=17 Score=19.92 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhhccccCCC
Q 029544 20 AFIVFICTRIICRRIRGVESR 40 (191)
Q Consensus 20 ~li~~~~~~~~~~r~~~~~~r 40 (191)
++++.++.-.....+|+++++
T Consensus 20 v~~v~ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 20 LFILVIVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHhhhhhhh
Confidence 344444455555555555443
No 142
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=60.14 E-value=8.9 Score=25.42 Aligned_cols=47 Identities=26% Similarity=0.557 Sum_probs=28.8
Q ss_pred CCCCCcCcccccccccCccEEEcC--CCCCcccHhhHHHHhcC----CCcccccccccc
Q 029544 83 SVEDAECSICLGEYQDKEVLRIMP--QCGHSFHLACIDIWLRK----KTTCPVCRLPLQ 135 (191)
Q Consensus 83 ~~~~~~C~IC~~~~~~~~~~~~~~--~C~H~f~~~Ci~~wl~~----~~~CP~Cr~~~~ 135 (191)
..++..|.+|.+ .+. +..-. .|-..||..|+. +.. .-.||.|....-
T Consensus 12 ~~~~~~C~~C~~---~G~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 12 QMHEDYCFQCGD---GGE-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp CSSCSSCTTTCC---CSE-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred CCCCCCCCcCCC---CCc-EeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 345667999983 233 33332 377899999987 432 223887765443
No 143
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=60.10 E-value=2.6 Score=25.70 Aligned_cols=44 Identities=32% Similarity=0.757 Sum_probs=27.0
Q ss_pred cCcccccccccCccEEEcCCCCCcccHhhHHHHhcC-----CCccccccc
Q 029544 88 ECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK-----KTTCPVCRL 132 (191)
Q Consensus 88 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~-----~~~CP~Cr~ 132 (191)
.|.+|...-..+..+ .-..|...||..|+.+=+.. .-.||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll-~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQL-MCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEE-ECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEE-EcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 355776543333333 44458899999999854442 334888864
No 144
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=60.07 E-value=6.3 Score=27.27 Aligned_cols=50 Identities=12% Similarity=0.178 Sum_probs=31.0
Q ss_pred CCCCcCcccccccc-cCccEEEcCCCCCcccHhhHHHHhcC----CCcccccccc
Q 029544 84 VEDAECSICLGEYQ-DKEVLRIMPQCGHSFHLACIDIWLRK----KTTCPVCRLP 133 (191)
Q Consensus 84 ~~~~~C~IC~~~~~-~~~~~~~~~~C~H~f~~~Ci~~wl~~----~~~CP~Cr~~ 133 (191)
.+...|.+|...|. ....-.....|.|.+|..|-..-... .-.|-+|+..
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 35678999999984 22222333369999999995432111 1238888753
No 145
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=59.81 E-value=2.9 Score=31.71 Aligned_cols=44 Identities=32% Similarity=0.757 Sum_probs=25.9
Q ss_pred cCcccccccccCccEEEcCCCCCcccHhhHHHHhcC-----CCccccccc
Q 029544 88 ECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK-----KTTCPVCRL 132 (191)
Q Consensus 88 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~-----~~~CP~Cr~ 132 (191)
.|.+|...-.....+ ....|...||..|+.+=+.. .-.||.|+.
T Consensus 176 ~C~vC~~~~~~~~lL-~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQL-MCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCE-ECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeE-EcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 477887643333344 33458899999999865542 235999975
No 146
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=57.80 E-value=20 Score=19.09 Aligned_cols=24 Identities=17% Similarity=0.015 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 029544 12 VIGFGMSAAFIVFICTRIICRRIR 35 (191)
Q Consensus 12 ~i~~~~~~~li~~~~~~~~~~r~~ 35 (191)
++..+++.++-.++++.+..+|.+
T Consensus 15 II~~vmaGiIG~IllI~y~I~rl~ 38 (40)
T 1afo_A 15 IIFGVMAGVIGTILLISYGIRRLI 38 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334444444444555444443
No 147
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.57 E-value=13 Score=22.57 Aligned_cols=40 Identities=18% Similarity=0.333 Sum_probs=27.3
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccC
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
....|.-|-..+.... +. .-+..||..| ..|-.|+.+|..
T Consensus 14 ~~~~C~~C~~~I~~~~-v~---a~~~~~H~~C--------F~C~~C~~~L~~ 53 (79)
T 2cor_A 14 GKYICQKCHAIIDEQP-LI---FKNDPYHPDH--------FNCANCGKELTA 53 (79)
T ss_dssp CCCBCTTTCCBCCSCC-CC---CSSSCCCTTT--------SBCSSSCCBCCT
T ss_pred CCCCCccCCCEecceE-EE---ECcceeCCCC--------CEeCCCCCccCC
Confidence 3456999988777332 22 3667788777 568888887764
No 148
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=57.23 E-value=3.1 Score=27.58 Aligned_cols=26 Identities=23% Similarity=0.658 Sum_probs=17.2
Q ss_pred CCCCcccHhhHHHHhcCCCccccccccccCC
Q 029544 107 QCGHSFHLACIDIWLRKKTTCPVCRLPLQDP 137 (191)
Q Consensus 107 ~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 137 (191)
.||+.|. .-+.....||.|+....+.
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEWIEE 97 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCCBCC
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCccCC
Confidence 7999981 1123456699999766543
No 149
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=56.91 E-value=2.2 Score=28.29 Aligned_cols=45 Identities=20% Similarity=0.551 Sum_probs=28.2
Q ss_pred cCcccccccccCccEEEcCCCCCcccHhhHHHHhcC----CCcccccccc
Q 029544 88 ECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK----KTTCPVCRLP 133 (191)
Q Consensus 88 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~----~~~CP~Cr~~ 133 (191)
.|.+|...-.+. .+..-..|...||..|+.+-+.. .-.||.|+.-
T Consensus 56 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDS-KMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCT-TEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCC-CeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 356676654333 34344468999999999865542 2348888643
No 150
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=55.17 E-value=1.8 Score=25.52 Aligned_cols=48 Identities=21% Similarity=0.430 Sum_probs=28.2
Q ss_pred CCCCcCccccc-ccccCccEEEcCCCCCcccHhhHHHHhcCCC----ccccccc
Q 029544 84 VEDAECSICLG-EYQDKEVLRIMPQCGHSFHLACIDIWLRKKT----TCPVCRL 132 (191)
Q Consensus 84 ~~~~~C~IC~~-~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~----~CP~Cr~ 132 (191)
.+...|.||+. .|.++.--.-.. |.-.||..|-..|-...+ .|-+|++
T Consensus 7 ~d~~~C~iC~KTKFADG~Gh~C~y-Ck~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 7 GDAPTCGICHKTKFADGCGHNCSY-CQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SCCCCCSSSSCSCCCSSCCEEBTT-TCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred CCcchhhhhccceeccCCCccccc-cCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 34567999996 466654443333 666677777655533222 2666664
No 151
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.15 E-value=8.4 Score=23.18 Aligned_cols=40 Identities=23% Similarity=0.479 Sum_probs=28.9
Q ss_pred CCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccC
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
...|..|-..+.....+. .-+..||..| ..|..|+.+|..
T Consensus 9 ~~~C~~C~~~I~~~~~v~---a~~~~~H~~C--------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS---SLGKDWHKFC--------LKCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE---ETTEEEETTT--------CBCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEE---ECCeEeeCCC--------CCCCCCCCccCC
Confidence 346999998887655543 3567888877 568888888764
No 152
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.50 E-value=14 Score=22.65 Aligned_cols=42 Identities=29% Similarity=0.505 Sum_probs=29.6
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCC
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDP 137 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 137 (191)
....|..|-..+.....+. .-+..||..| ..|-.|+..|...
T Consensus 14 ~~~~C~~C~~~I~~~e~v~---a~~~~wH~~C--------F~C~~C~~~L~~~ 55 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC---VNGHFFHRSC--------FRCHTCEATLWPG 55 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC---BTTBCCBTTT--------CBCSSSCCBCCTT
T ss_pred CCCCCcccCCCcccceEEE---ECCCeeCCCc--------CEEcCCCCCcCCC
Confidence 3457999998876555443 3567888888 5688888877543
No 153
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=54.17 E-value=1.3 Score=29.75 Aligned_cols=47 Identities=21% Similarity=0.611 Sum_probs=30.0
Q ss_pred cCcccccccccCccEEEcCCCCCcccHhhHHHHhcC----CCcccccccccc
Q 029544 88 ECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRK----KTTCPVCRLPLQ 135 (191)
Q Consensus 88 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~----~~~CP~Cr~~~~ 135 (191)
.|.+|...-.....+ .-..|...||..|+.+-+.. .-.||.|+..+.
T Consensus 60 ~C~~C~~~~~~~~ll-~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 60 SCILCGTSENDDQLL-FCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp CCTTTTCCTTTTTEE-ECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred ccCcccccCCCCceE-EcCCCCccccccccCCCccCCCCCCeECccccchhh
Confidence 467777654344444 34468899999999864442 224998876543
No 154
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.28 E-value=15 Score=22.96 Aligned_cols=40 Identities=20% Similarity=0.404 Sum_probs=28.1
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccC
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
....|..|-..+.. ..+. .-+..||..| ..|-.|+..|..
T Consensus 24 ~~~~C~~C~~~I~~-~~v~---a~~~~~H~~C--------F~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIRG-PFLV---ALGKSWHPEE--------FNCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCCS-CEEE---ETTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCCccCCCEecc-eEEE---ECCccccccC--------CccCCCCCCCCC
Confidence 44579999988753 3332 3678888888 568888888764
No 155
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=52.23 E-value=6.4 Score=23.01 Aligned_cols=43 Identities=35% Similarity=0.665 Sum_probs=25.8
Q ss_pred CCCcCcccccccccCccEEEcCC--CC-CcccHhhHHHHhcC----CCccccccc
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQ--CG-HSFHLACIDIWLRK----KTTCPVCRL 132 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~--C~-H~f~~~Ci~~wl~~----~~~CP~Cr~ 132 (191)
+..-| +|..... +. ...-.. |. ..||..|+. +.. .-.||.|+.
T Consensus 8 e~~yC-~C~~~~~-g~-mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-GE-MIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-SE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-CC-eeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34456 8987643 33 333334 65 689999987 332 234998864
No 156
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=51.50 E-value=6.4 Score=23.05 Aligned_cols=42 Identities=31% Similarity=0.668 Sum_probs=25.0
Q ss_pred CCcCcccccccccCccEEEcCC--CC-CcccHhhHHHHhc----CCCccccccc
Q 029544 86 DAECSICLGEYQDKEVLRIMPQ--CG-HSFHLACIDIWLR----KKTTCPVCRL 132 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~--C~-H~f~~~Ci~~wl~----~~~~CP~Cr~ 132 (191)
..-| ||..... +..+ .-.. |. ..||..|+. +. ..-.||.|+.
T Consensus 10 ~~~C-~C~~~~~-g~mi-~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-GEMI-GCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-SEEE-ECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-CCEE-EeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 4456 8987643 3333 3323 54 689999987 33 2234888864
No 157
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=51.43 E-value=5.3 Score=26.06 Aligned_cols=12 Identities=33% Similarity=0.891 Sum_probs=10.7
Q ss_pred cccHhhHHHHhc
Q 029544 111 SFHLACIDIWLR 122 (191)
Q Consensus 111 ~f~~~Ci~~wl~ 122 (191)
.||..|+..|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999986
No 158
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=51.42 E-value=5.3 Score=26.10 Aligned_cols=12 Identities=33% Similarity=0.958 Sum_probs=10.8
Q ss_pred cccHhhHHHHhc
Q 029544 111 SFHLACIDIWLR 122 (191)
Q Consensus 111 ~f~~~Ci~~wl~ 122 (191)
.||..|+..|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999986
No 159
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=51.39 E-value=2.4 Score=25.55 Aligned_cols=46 Identities=26% Similarity=0.554 Sum_probs=27.1
Q ss_pred CCcCcccccccccCccEEEc-CCCCCcccHhhHHHHh---c-----CCCccccccc
Q 029544 86 DAECSICLGEYQDKEVLRIM-PQCGHSFHLACIDIWL---R-----KKTTCPVCRL 132 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~-~~C~H~f~~~Ci~~wl---~-----~~~~CP~Cr~ 132 (191)
...| ||......+..+.-- ..|...||..|+.--- . .+..||.||.
T Consensus 10 ~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 10 KVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp EECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 3456 787665555555321 1377789999973210 0 1345999974
No 160
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.04 E-value=12 Score=22.64 Aligned_cols=38 Identities=18% Similarity=0.348 Sum_probs=26.5
Q ss_pred CCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCcccccccccc
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQ 135 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~ 135 (191)
...|.-|-..+... .+. .-+..||..| ..|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~-~~~---a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVGV-FVK---LRDRHRHPEC--------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCSS-CEE---CSSCEECTTT--------TSCSSSCCCHH
T ss_pred CCccccCCCCccCc-EEE---ECcceeCcCc--------CeeCCCCCCCC
Confidence 45699999887753 232 3677888888 45778877764
No 161
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.96 E-value=12 Score=22.88 Aligned_cols=40 Identities=23% Similarity=0.582 Sum_probs=28.8
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCcccccccccc
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQ 135 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~ 135 (191)
....|.-|-..+.....+. .-+..||.+| ..|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~---a~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLL---ALDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEE---ETTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEE---ECCccccccc--------CCcCcCCCCcC
Confidence 3456999998887655553 2567788887 56888888775
No 162
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.15 E-value=19 Score=20.99 Aligned_cols=37 Identities=22% Similarity=0.534 Sum_probs=24.5
Q ss_pred CcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCcccccccccc
Q 029544 87 AECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQ 135 (191)
Q Consensus 87 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~ 135 (191)
..|..|-..+.... +. .-+..||..| ..|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~~-~~---a~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8z_A 6 SGCVQCKKPITTGG-VT---YREQPWHKEC--------FVCTACRKQLS 42 (70)
T ss_dssp CBCSSSCCBCCSSE-EE---SSSSEEETTT--------SBCSSSCCBCT
T ss_pred CCCcccCCeeccce-EE---ECccccCCCC--------CccCCCCCcCC
Confidence 45888887776432 22 3567788777 56778887774
No 163
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=50.12 E-value=11 Score=23.45 Aligned_cols=11 Identities=9% Similarity=0.051 Sum_probs=6.7
Q ss_pred CCCCchhHHHH
Q 029544 1 MWGSGMNLITT 11 (191)
Q Consensus 1 ~~g~~~~~v~~ 11 (191)
|||+|.+=+++
T Consensus 2 Mf~ig~~Elli 12 (78)
T 2l16_A 2 FSNIGIPGLIL 12 (78)
T ss_dssp CSSSCHHHHHH
T ss_pred CCCCCHHHHHH
Confidence 68887654433
No 164
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.97 E-value=15 Score=21.58 Aligned_cols=39 Identities=26% Similarity=0.601 Sum_probs=24.9
Q ss_pred CCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccC
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
...|..|-..+... .+. .-+..||.+| ..|-.|+.+|..
T Consensus 5 ~~~C~~C~~~I~~~-~~~---a~~~~~H~~C--------F~C~~C~~~L~~ 43 (70)
T 2d8x_A 5 SSGCHQCGEFIIGR-VIK---AMNNSWHPEC--------FRCDLCQEVLAD 43 (70)
T ss_dssp SSBCSSSCCBCCSC-CEE---ETTEEECTTT--------SBCSSSCCBCSS
T ss_pred CCcCccCCCEecce-EEE---ECcccccccC--------CEeCCCCCcCCC
Confidence 34688888776642 222 3566777777 467778777654
No 165
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=49.19 E-value=9.6 Score=18.97 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=18.4
Q ss_pred CcCcccccccccCccEEEcCCCCCcccHhh
Q 029544 87 AECSICLGEYQDKEVLRIMPQCGHSFHLAC 116 (191)
Q Consensus 87 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~C 116 (191)
..|+.|-...-..+.+. .-|..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~---~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN---CLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCC---SSSSCCCGGG
T ss_pred CcCCccCCEEecceeEE---ECCeEecccC
Confidence 35888888766555553 3567788877
No 166
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.03 E-value=22 Score=22.12 Aligned_cols=40 Identities=25% Similarity=0.476 Sum_probs=28.0
Q ss_pred CCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccC
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
...|.-|-..+.....+. .-+..||..| ..|-.|...|..
T Consensus 15 ~~~C~~C~~~I~~~~~v~---a~~~~~H~~C--------F~C~~C~~~L~~ 54 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL---ANQQVFHISC--------FRCSYCNNKLSL 54 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE---CSSSEEETTT--------CBCTTTCCBCCT
T ss_pred CCcCccCCCccCCceeEE---ECCCEECCCC--------CeeCCCCCCCCC
Confidence 456999988887655443 3677888887 457788777654
No 167
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=48.02 E-value=26 Score=20.77 Aligned_cols=18 Identities=11% Similarity=0.220 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029544 9 ITTVIGFGMSAAFIVFIC 26 (191)
Q Consensus 9 v~~~i~~~~~~~li~~~~ 26 (191)
..-++++++++++++.++
T Consensus 26 TtplMgv~m~Lf~vFl~i 43 (65)
T 3arc_H 26 TTPLMAVFMGLFLVFLLI 43 (65)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHH
Confidence 344455555444444433
No 168
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=47.91 E-value=1.6 Score=27.34 Aligned_cols=16 Identities=25% Similarity=0.739 Sum_probs=13.6
Q ss_pred CCCCcccHhhHHHHhc
Q 029544 107 QCGHSFHLACIDIWLR 122 (191)
Q Consensus 107 ~C~H~f~~~Ci~~wl~ 122 (191)
.|++.||..|...|-.
T Consensus 55 ~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCSCCEETTTTEECCS
T ss_pred CCCCeeccccCccccC
Confidence 5999999999988843
No 169
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=47.72 E-value=10 Score=23.15 Aligned_cols=48 Identities=19% Similarity=0.406 Sum_probs=30.1
Q ss_pred CcccccccccCccEEEcCCCCCcccHhhHHHHhc-----CCCccccccccccC
Q 029544 89 CSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR-----KKTTCPVCRLPLQD 136 (191)
Q Consensus 89 C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~-----~~~~CP~Cr~~~~~ 136 (191)
-.||...+......+.-..|.-.||..|+.---. ..-.||.|+.....
T Consensus 12 yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~~~ 64 (75)
T 3kqi_A 12 YCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHGK 64 (75)
T ss_dssp ETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHHCC
T ss_pred EEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccCCC
Confidence 3388877654433433345888999999853211 23459999876544
No 170
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=53.18 E-value=3.9 Score=21.83 Aligned_cols=8 Identities=25% Similarity=0.227 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 029544 8 LITTVIGF 15 (191)
Q Consensus 8 ~v~~~i~~ 15 (191)
..+.+++.
T Consensus 6 ~~~~vl~a 13 (39)
T 2l6w_A 6 FKVVVISA 13 (39)
Confidence 33333333
No 171
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=47.14 E-value=20 Score=25.48 Aligned_cols=44 Identities=23% Similarity=0.615 Sum_probs=29.3
Q ss_pred CCCCcCcccccccccCccEEEcC--CCCCcccHhhHHHHhcC----------CCcccccc
Q 029544 84 VEDAECSICLGEYQDKEVLRIMP--QCGHSFHLACIDIWLRK----------KTTCPVCR 131 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~--~C~H~f~~~Ci~~wl~~----------~~~CP~Cr 131 (191)
..+..|.+|-+. ..+.... .|...||..||+.++.. .-.|=+|.
T Consensus 77 G~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 77 GYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp SSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred CCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 345678888853 2333332 58889999999988752 22477775
No 172
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=46.39 E-value=23 Score=29.02 Aligned_cols=46 Identities=26% Similarity=0.565 Sum_probs=30.6
Q ss_pred CCCCcCcccccccccCccEEEcC--CCCCcccHhhHHHHhc----------CCCcccccccc
Q 029544 84 VEDAECSICLGEYQDKEVLRIMP--QCGHSFHLACIDIWLR----------KKTTCPVCRLP 133 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~--~C~H~f~~~Ci~~wl~----------~~~~CP~Cr~~ 133 (191)
..+..|.+|-+. ..+.... .|...||..||+..+. ..-.|=+|.-.
T Consensus 91 G~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 91 GYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 345568888753 2233333 6889999999999873 23458888743
No 173
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=46.16 E-value=12 Score=22.45 Aligned_cols=31 Identities=13% Similarity=0.276 Sum_probs=13.8
Q ss_pred CCcCcccccccccCccEEEcCCCCCcccH-hhHHH
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGHSFHL-ACIDI 119 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~-~Ci~~ 119 (191)
-+.|..|...+....... .=+..||. .|..+
T Consensus 27 CF~C~~C~~~L~~~~~~~---~~g~~yC~~~cy~~ 58 (76)
T 1iml_A 27 CLKCEKCGKTLTSGGHAE---HEGKPYCNHPCYSA 58 (76)
T ss_dssp TCBCTTTCCBCCTTTEEE---ETTEEEETTTHHHH
T ss_pred CCCccccCccCCCCceEC---cCCeEeeCHHHHHH
Confidence 345555555554432111 23445555 35544
No 174
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.85 E-value=27 Score=20.42 Aligned_cols=40 Identities=25% Similarity=0.470 Sum_probs=26.2
Q ss_pred CcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccC
Q 029544 87 AECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 87 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
..|..|-..+........ .-+..||..| ..|-.|+.++..
T Consensus 6 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLE--YGGQTWHEHC--------FLCSGCEQPLGS 45 (72)
T ss_dssp CBCSSSCCBCCSSSCEEC--STTCCEETTT--------CBCTTTCCBTTT
T ss_pred CCCccCCCccccCccEEE--ECccccCccc--------CeECCCCCcCCC
Confidence 468888888775422211 3567788777 567888877753
No 175
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.16 E-value=20 Score=20.89 Aligned_cols=37 Identities=19% Similarity=0.462 Sum_probs=22.9
Q ss_pred CcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCcccccccccc
Q 029544 87 AECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQ 135 (191)
Q Consensus 87 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~ 135 (191)
..|.-|-..+... .+. .-+..||..| ..|-.|+.++.
T Consensus 6 ~~C~~C~~~I~~~-~~~---a~~~~~H~~C--------F~C~~C~~~L~ 42 (69)
T 2cur_A 6 SGCVKCNKAITSG-GIT---YQDQPWHADC--------FVCVTCSKKLA 42 (69)
T ss_dssp CCCSSSCCCCCTT-CEE---ETTEEECTTT--------TBCTTTCCBCT
T ss_pred CCCcccCCEeCcc-eEE---ECccccccCc--------CEECCCCCCCC
Confidence 4577777776543 222 2566777776 45777777765
No 176
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=43.91 E-value=34 Score=18.21 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 029544 6 MNLITTVIGFGMSAAFIVFICTR 28 (191)
Q Consensus 6 ~~~v~~~i~~~~~~~li~~~~~~ 28 (191)
+++|.++.++.+..++-+|++-.
T Consensus 10 LWlvgtv~G~~vi~~~giFfyGs 32 (40)
T 3arc_J 10 LWIVATVAGMGVIVIVGLFFYGA 32 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeeeehhhhhhheeeEEEeec
Confidence 67777777777666665555433
No 177
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=43.84 E-value=8.9 Score=23.40 Aligned_cols=40 Identities=33% Similarity=0.621 Sum_probs=25.8
Q ss_pred CCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccC
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
...|..|-..+.....+. .-+..||.+| ..|-.|+.++..
T Consensus 7 ~~~C~~C~~~I~~~~~~~---a~~~~~H~~C--------F~C~~C~~~L~~ 46 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQ---CDGRSFHRCC--------FLCMVCRKNLDS 46 (81)
T ss_dssp -CBCSSSCCBCSSTTEEE---ETTEEEESSS--------EECSSSCCEECS
T ss_pred CCcCcCcCccccCceeEE---eCCccccccc--------CccCCCCCCCCC
Confidence 346888888776555443 2566777776 457777777654
No 178
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=43.25 E-value=11 Score=22.28 Aligned_cols=44 Identities=27% Similarity=0.615 Sum_probs=25.4
Q ss_pred CCcCcccccccccCccEEEcCC--CC-CcccHhhHHHHhc--CCCccccccc
Q 029544 86 DAECSICLGEYQDKEVLRIMPQ--CG-HSFHLACIDIWLR--KKTTCPVCRL 132 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~--C~-H~f~~~Ci~~wl~--~~~~CP~Cr~ 132 (191)
..-| +|..... +..+ .-.. |. ..||..|+.---. ..-.||.|+.
T Consensus 11 ~~yC-~C~~~~~-g~MI-~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVSY-GEMI-GCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEECC-SEEE-ECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCCC-CCee-eeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 4456 8987533 3333 3334 54 7899999862111 2334998864
No 179
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=42.78 E-value=13 Score=25.05 Aligned_cols=39 Identities=26% Similarity=0.548 Sum_probs=29.6
Q ss_pred CCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCcccccccccc
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQ 135 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~ 135 (191)
...|.-|-..+.....+. .-+..||..| ..|-.|+..|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~---a~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLY---AMDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEE---ETTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEE---eCCcEEcccc--------cCcCcCCCccc
Confidence 457999999887664343 3677899888 67999998885
No 180
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.29 E-value=18 Score=21.58 Aligned_cols=36 Identities=17% Similarity=0.442 Sum_probs=21.3
Q ss_pred cCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCcccccccccc
Q 029544 88 ECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQ 135 (191)
Q Consensus 88 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~ 135 (191)
.|+-|-..+...... .-+..||.+| ..|-.|+.++.
T Consensus 7 ~C~~C~~~I~~~~v~----a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 7 GCDSCEKYITGRVLE----AGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp SCSSSCCCCSSCCBC----CSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CcccCCCEecCeeEE----eCCCCCCCCc--------CEeCCCCCCCC
Confidence 577777666542211 3566677666 45667766664
No 181
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=42.08 E-value=21 Score=20.59 Aligned_cols=39 Identities=21% Similarity=0.506 Sum_probs=26.4
Q ss_pred CCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccC
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
...|+.|-..+. +..+ . .-+..||..| ..|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~-~~~~--~-a~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GRVV--N-AMGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SCEE--C-CTTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCCcccCCEec-ceEE--E-ECccccccCc--------CEECCCCCCCCC
Confidence 346888888777 3322 2 3567788877 568888887753
No 182
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.22 E-value=22 Score=21.16 Aligned_cols=42 Identities=24% Similarity=0.580 Sum_probs=27.2
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccC
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
....|+-|-..+.....+.. .-+..||..| ..|-.|+.++..
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~~ 51 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVN--SNGELYHEQC--------FVCAQCFQQFPE 51 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEE--ETTEEECTTT--------CCCTTTCCCCGG
T ss_pred CCCCchhcCCccCCCceEEE--eCccEecccc--------CeECCCCCCCCC
Confidence 34569999988764333211 2566788777 567788777754
No 183
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.13 E-value=33 Score=20.04 Aligned_cols=39 Identities=21% Similarity=0.497 Sum_probs=26.2
Q ss_pred CCcCccccccccc--C-ccEEEcCCCCCcccHhhHHHHhcCCCcccccccccc
Q 029544 86 DAECSICLGEYQD--K-EVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQ 135 (191)
Q Consensus 86 ~~~C~IC~~~~~~--~-~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~ 135 (191)
...|.-|-..+.. . ..+. .-+..||..| ..|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~---a~~~~wH~~C--------F~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYIS---FEERQWHNDC--------FNCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEE---CSSCEECTTT--------CBCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceEE---ECCcccCccc--------CEeccCCCcCC
Confidence 3468888887774 2 2232 3577888877 56888887775
No 184
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=41.05 E-value=2.7 Score=33.45 Aligned_cols=50 Identities=14% Similarity=0.212 Sum_probs=32.7
Q ss_pred CCCCcCcccccccccCccEEEcCCCC--CcccHhhHHHHhcCCCcccccccc
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCG--HSFHLACIDIWLRKKTTCPVCRLP 133 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~--H~f~~~Ci~~wl~~~~~CP~Cr~~ 133 (191)
+....|++|-...........-..-| +.+|..|-.+|-.....||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 45678999998755432110000123 567888888998888889999865
No 185
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=40.94 E-value=3 Score=26.40 Aligned_cols=18 Identities=33% Similarity=0.912 Sum_probs=14.5
Q ss_pred EEcCCCCCcccHhhHHHH
Q 029544 103 RIMPQCGHSFHLACIDIW 120 (191)
Q Consensus 103 ~~~~~C~H~f~~~Ci~~w 120 (191)
...+.|++.||..|-..|
T Consensus 44 v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 44 ATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp EECTTTCCEECSSSCSBC
T ss_pred eEeCCCCCccccccCCch
Confidence 344469999999998888
No 186
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.37 E-value=31 Score=20.76 Aligned_cols=37 Identities=16% Similarity=0.424 Sum_probs=25.5
Q ss_pred CcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCcccccccccc
Q 029544 87 AECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQ 135 (191)
Q Consensus 87 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~ 135 (191)
..|..|-..+... .+. .-+..||..| ..|-.|+..|.
T Consensus 16 ~~C~~C~~~I~~~-~~~---a~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 1x6a_A 16 EFCHGCSLLMTGP-FMV---AGEFKYHPEC--------FACMSCKVIIE 52 (81)
T ss_dssp CBCTTTCCBCCSC-CBC---CTTCCBCTTS--------CBCTTTCCBCC
T ss_pred CcCccCCCCcCce-EEE---ECCceecccc--------CCccCCCCccC
Confidence 4688888877732 221 3567788777 56888888775
No 187
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=39.83 E-value=6.7 Score=22.11 Aligned_cols=41 Identities=22% Similarity=0.601 Sum_probs=24.3
Q ss_pred ccccccccCccEEEcCCCCCcccHhhHHHHh---cCCCccccccc
Q 029544 91 ICLGEYQDKEVLRIMPQCGHSFHLACIDIWL---RKKTTCPVCRL 132 (191)
Q Consensus 91 IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl---~~~~~CP~Cr~ 132 (191)
||.........+. -..|...||..|+.--- ...-.||.|+.
T Consensus 8 ~C~~~~~~~~MI~-Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIE-CNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEE-CTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEE-cCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 5766544334443 33588899999975321 13345888864
No 188
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.42 E-value=20 Score=21.71 Aligned_cols=38 Identities=34% Similarity=0.781 Sum_probs=26.9
Q ss_pred CcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccC
Q 029544 87 AECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 87 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
..|+.|-..+.. ..+. .-+..||..| ..|-.|+.++..
T Consensus 16 ~~C~~C~~~I~~-~~v~---a~~~~wH~~C--------F~C~~C~~~L~~ 53 (81)
T 1v6g_A 16 TRCFSCDQFIEG-EVVS---ALGKTYHPDC--------FVCAVCRLPFPP 53 (81)
T ss_dssp CBCTTTCCBCCS-CCEE---ETTEEECTTT--------SSCSSSCCCCCS
T ss_pred CcCccccCEecc-ceEE---ECCceeCccC--------CccccCCCCCCC
Confidence 469999988774 3332 3677888888 568888887753
No 189
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=39.37 E-value=7.7 Score=19.16 Aligned_cols=12 Identities=33% Similarity=0.855 Sum_probs=8.3
Q ss_pred CccccccccccC
Q 029544 125 TTCPVCRLPLQD 136 (191)
Q Consensus 125 ~~CP~Cr~~~~~ 136 (191)
..||+|+..+..
T Consensus 4 ~~CpvCk~q~Pd 15 (28)
T 2jvx_A 4 FCCPKCQYQAPD 15 (28)
T ss_dssp EECTTSSCEESS
T ss_pred ccCccccccCcC
Confidence 458999876543
No 190
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=38.97 E-value=6.4 Score=35.82 Aligned_cols=15 Identities=20% Similarity=0.457 Sum_probs=0.0
Q ss_pred CCchhHHHHHHHHHH
Q 029544 3 GSGMNLITTVIGFGM 17 (191)
Q Consensus 3 g~~~~~v~~~i~~~~ 17 (191)
|.+...++++++.++
T Consensus 701 ~l~~~aii~il~~~~ 715 (880)
T 1q55_A 701 GFDLPIILVILGSVL 715 (880)
T ss_dssp ---------------
T ss_pred CccHHHHHHHHHHHH
Confidence 334443344433333
No 191
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=38.08 E-value=27 Score=21.64 Aligned_cols=12 Identities=0% Similarity=0.113 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 029544 8 LITTVIGFGMSA 19 (191)
Q Consensus 8 ~v~~~i~~~~~~ 19 (191)
+..++++++.++
T Consensus 10 ~~~Iv~gvi~gi 21 (79)
T 2knc_B 10 ILVVLLSVMGAI 21 (79)
T ss_dssp SHHHHHHHHHHH
T ss_pred chhhHHHHHHHH
Confidence 334444444443
No 192
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.03 E-value=46 Score=19.82 Aligned_cols=38 Identities=21% Similarity=0.559 Sum_probs=26.0
Q ss_pred CCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCcccccccccc
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQ 135 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~ 135 (191)
...|..|-..+... .+. .-+..||..| ..|-.|+.++.
T Consensus 15 ~~~C~~C~~~I~~~-~v~---a~~~~~H~~C--------F~C~~C~~~L~ 52 (80)
T 2cuq_A 15 APRCARCSKTLTQG-GVT---YRDQPWHREC--------LVCTGCQTPLA 52 (80)
T ss_dssp SCCCTTTCCCCCSC-CEE---SSSSEECTTT--------CBCSSSCCBCT
T ss_pred CCcCCCCCCEecCc-EEE---ECCchhhhhh--------CCcccCCCcCC
Confidence 34688888877654 222 3677888877 46888888774
No 193
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.94 E-value=21 Score=21.56 Aligned_cols=38 Identities=34% Similarity=0.777 Sum_probs=26.0
Q ss_pred CCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCcccccccccc
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQ 135 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~ 135 (191)
...|+.|-..+... .+. .-+..||..| ..|..|+.++.
T Consensus 15 ~~~C~~C~~~I~~~-~~~---a~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 2dlo_A 15 LEKCATCSQPILDR-ILR---AMGKAYHPGC--------FTCVVCHRGLD 52 (81)
T ss_dssp CCBCTTTCCBCCSC-CEE---ETTEEECTTT--------CBCSSSCCBCT
T ss_pred CCccccCCCeecce-eEE---ECCccccHHh--------cCcccCCCccC
Confidence 45688888877643 232 3567788777 56888888775
No 194
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.78 E-value=46 Score=19.93 Aligned_cols=41 Identities=20% Similarity=0.436 Sum_probs=28.4
Q ss_pred CCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccC
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
...|..|-..+........ .-+..||..| ..|-.|+.++..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVE--YKGTVWHKDC--------FTCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEE--CSSCEEETTT--------CCCSSSCCCCTT
T ss_pred CCcCccCCcccccCceEEE--ECcccccccc--------CchhhCCCccCC
Confidence 4579999988875544322 3567888887 568888887754
No 195
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=35.55 E-value=2.3 Score=19.86 Aligned_cols=12 Identities=33% Similarity=0.681 Sum_probs=8.8
Q ss_pred cccHhhHHHHhc
Q 029544 111 SFHLACIDIWLR 122 (191)
Q Consensus 111 ~f~~~Ci~~wl~ 122 (191)
.||..|-++|+.
T Consensus 6 ffcetcskpwlv 17 (26)
T 1loi_A 6 FFCETCSKPWLV 17 (26)
T ss_dssp HHHHTSSCTTGG
T ss_pred HHHHhcCCchhh
Confidence 478888777764
No 196
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=35.15 E-value=22 Score=25.13 Aligned_cols=47 Identities=19% Similarity=0.504 Sum_probs=30.2
Q ss_pred CCCcCccccccccc--CccEEEcCCCCCcccHhhHHHHhcCCC--cccccccc
Q 029544 85 EDAECSICLGEYQD--KEVLRIMPQCGHSFHLACIDIWLRKKT--TCPVCRLP 133 (191)
Q Consensus 85 ~~~~C~IC~~~~~~--~~~~~~~~~C~H~f~~~Ci~~wl~~~~--~CP~Cr~~ 133 (191)
++..|.+|...|.- +...... .|.|.+|..|-. |..... .|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~-~C~~~VC~~C~~-~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCL-ECSLFVCKSCSH-AHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECT-TTCCEECGGGEE-CCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCC-CCCchhhccccc-ccCCCCcEeeHHHHHH
Confidence 46789999998642 2333333 599999999962 332222 38888753
No 197
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.91 E-value=34 Score=20.31 Aligned_cols=38 Identities=18% Similarity=0.482 Sum_probs=26.3
Q ss_pred CcCccccccccc--C-ccEEEcCCCCCcccHhhHHHHhcCCCcccccccccc
Q 029544 87 AECSICLGEYQD--K-EVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQ 135 (191)
Q Consensus 87 ~~C~IC~~~~~~--~-~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~ 135 (191)
..|+.|-..+.. . ..+. .-+..||.+| ..|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~---a~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFIC---FQDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEE---ETTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEE---ECCcccCccc--------CChhhCCCcCC
Confidence 468889888774 2 2232 3667888888 56888887775
No 198
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.51 E-value=28 Score=20.36 Aligned_cols=40 Identities=23% Similarity=0.458 Sum_probs=25.2
Q ss_pred CcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccC
Q 029544 87 AECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 87 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
..|..|-..+........ .-+..||..| ..|-.|+.++..
T Consensus 6 ~~C~~C~~~I~~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKME--YKGSSWHETC--------FICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSCEEE--ETTEEEETTT--------TCCSSSCCCCCS
T ss_pred CCCccCCCcccCCceEEE--ECcCeecccC--------CcccccCCccCC
Confidence 358888887776432221 2566777777 457778777653
No 199
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=34.40 E-value=20 Score=23.36 Aligned_cols=42 Identities=29% Similarity=0.597 Sum_probs=25.8
Q ss_pred CcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCC
Q 029544 87 AECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDP 137 (191)
Q Consensus 87 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 137 (191)
..|+.|..++... =++.+|..|-.. +.....||-|..++...
T Consensus 33 ~~CP~Cq~eL~~~--------g~~~hC~~C~~~-f~~~a~CPdC~q~LevL 74 (101)
T 2jne_A 33 LHCPQCQHVLDQD--------NGHARCRSCGEF-IEMKALCPDCHQPLQVL 74 (101)
T ss_dssp CBCSSSCSBEEEE--------TTEEEETTTCCE-EEEEEECTTTCSBCEEE
T ss_pred ccCccCCCcceec--------CCEEECccccch-hhccccCcchhhHHHHH
Confidence 5799999876532 223345556432 23445599999887643
No 200
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.81 E-value=41 Score=20.07 Aligned_cols=39 Identities=18% Similarity=0.435 Sum_probs=26.5
Q ss_pred CCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccC
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
...|+.|-..+... .+. .-+..||..| ..|-.|+.++..
T Consensus 15 ~~~C~~C~~~I~~~-~v~---a~~~~~H~~C--------F~C~~C~~~L~~ 53 (80)
T 1x3h_A 15 SPKCGGCNRPVLEN-YLS---AMDTVWHPEC--------FVCGDCFTSFST 53 (80)
T ss_dssp SCBCTTTCCBCCSS-CEE---ETTEEECTTT--------CBCSSSCCBSCS
T ss_pred CCccccCCCeecce-eEE---ECCCeEecCc--------CChhhCCCCCCC
Confidence 34688888877753 232 3567788777 568888887754
No 201
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=31.69 E-value=17 Score=23.25 Aligned_cols=45 Identities=20% Similarity=0.459 Sum_probs=25.5
Q ss_pred CCCcCcccccccccCccEEEcCCCC---CcccHhhHHHHh--cCCCcccc-ccc
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCG---HSFHLACIDIWL--RKKTTCPV-CRL 132 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~---H~f~~~Ci~~wl--~~~~~CP~-Cr~ 132 (191)
+..-| ||..... +..+ ....|. ..||..|+.--- ...-.||. |+.
T Consensus 25 ~~~yC-iC~~~~~-g~MI-~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 25 EEVYC-FCRNVSY-GPMV-ACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CSCCS-TTTCCCS-SSEE-CCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred CCcEE-EeCCCCC-CCEE-EecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 34457 8987433 3333 222344 689999985110 12345999 974
No 202
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=31.22 E-value=60 Score=16.89 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029544 8 LITTVIGFGMSAAFIVFICTR 28 (191)
Q Consensus 8 ~v~~~i~~~~~~~li~~~~~~ 28 (191)
.+.+++.+.+..++++++++.
T Consensus 8 fiAt~Lfi~iPt~FLlilYvq 28 (36)
T 3arc_M 8 LIATALFVLVPSVFLIILYVQ 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhe
Confidence 555666666666665555443
No 203
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=31.17 E-value=35 Score=22.52 Aligned_cols=49 Identities=10% Similarity=-0.019 Sum_probs=34.1
Q ss_pred CCcCccccccccc-CccEEEcCCCCCcccHhhHHHHhcCCCccccccccccC
Q 029544 86 DAECSICLGEYQD-KEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 86 ~~~C~IC~~~~~~-~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
-+.|..|-..+.+ +... .. .=+..||..|..+.+.....|-.|..++..
T Consensus 32 CF~C~~C~~~L~~~~~~~-~~-~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSS-YT-KSGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HHCCSSSCCCTTTSEECC-EE-ETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCCcCCCCCcccccCCeE-EE-ECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 3568888888753 1111 11 367789999998877655579999988874
No 204
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=31.11 E-value=90 Score=18.86 Aligned_cols=10 Identities=20% Similarity=0.172 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 029544 9 ITTVIGFGMS 18 (191)
Q Consensus 9 v~~~i~~~~~ 18 (191)
+++.+.|+++
T Consensus 22 ifA~vLfi~G 31 (72)
T 2jo1_A 22 VIAGILFILG 31 (72)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 205
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=30.49 E-value=43 Score=19.29 Aligned_cols=43 Identities=23% Similarity=0.554 Sum_probs=29.2
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCC
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDP 137 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 137 (191)
....|..|-..+.....+.. .-+..||..| ..|-.|..++...
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~--~~~~~~H~~C--------F~C~~C~~~L~~~ 52 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVN--SNGELYHEQC--------FVCAQCFQQFPEG 52 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEE--ETTEEEETTT--------SSCTTTCCCCGGG
T ss_pred CCccchhcCccccCCceEEE--eCcCeeCcCC--------CcccCCCCCCCCC
Confidence 34579999988876654322 2566788887 4688888877543
No 206
>2jyp_A Aragonite protein AP7; protein C-terminal fragment, unknown function; NMR {Synthetic}
Probab=29.90 E-value=13 Score=18.66 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=17.3
Q ss_pred CCCcCcccccccccCccEEEcCCCCCccc
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFH 113 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~ 113 (191)
...+|+.|+.....++.. .|-..+|
T Consensus 8 pfhecalcysitdpgerq----rcidmyc 32 (36)
T 2jyp_A 8 PFHECALCYSITDPGERQ----RCIDMYC 32 (36)
T ss_dssp TTTCCSSSTTTTTTTCTT----CGGGTTT
T ss_pred ccchheeEEeecCcchhh----hhhhhee
Confidence 345799999887777666 4655555
No 207
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=28.53 E-value=50 Score=20.72 Aligned_cols=35 Identities=17% Similarity=0.375 Sum_probs=21.5
Q ss_pred CCCcCcccccccccCccEE-EcCCCCCcccHhhHHHH
Q 029544 85 EDAECSICLGEYQDKEVLR-IMPQCGHSFHLACIDIW 120 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~-~~~~C~H~f~~~Ci~~w 120 (191)
....|.||...- .+..+. ..+.|.-.||..|...-
T Consensus 16 ~~l~C~iC~~~~-~GAciqC~~~~C~~~fHv~CA~~a 51 (87)
T 2lq6_A 16 WKLTCYLCKQKG-VGASIQCHKANCYTAFHVTCAQKA 51 (87)
T ss_dssp CCCCBTTTTBCC-SSCEEECSCTTTCCEEEHHHHHHH
T ss_pred hcCCCcCCCCCC-CcEeEecCCCCCCCcCcHHHHHHC
Confidence 356799996531 133331 11258889999998763
No 208
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=28.34 E-value=34 Score=22.66 Aligned_cols=35 Identities=14% Similarity=0.213 Sum_probs=19.9
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHHh
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWL 121 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl 121 (191)
.-+.|..|-..+..+..... .-+..||..|..+.+
T Consensus 35 ~CF~C~~C~~~L~~g~~f~~--~~g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRYLL--INSDIVCEQDIYEWT 69 (123)
T ss_dssp TTCBCTTTCCBCCTTCEEEE--CSSSEEEGGGHHHHH
T ss_pred ccCccccCCCCCCCCCcEEe--eCCEEEcHHHhHHHh
Confidence 34567777777643322211 246677777776654
No 209
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=27.76 E-value=35 Score=21.35 Aligned_cols=40 Identities=25% Similarity=0.597 Sum_probs=19.0
Q ss_pred CcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCcccccccccc
Q 029544 87 AECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQ 135 (191)
Q Consensus 87 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~ 135 (191)
..|+.|...+...... .+|..|-..+ .....||-|..++.
T Consensus 3 ~~CP~C~~~l~~~~~~--------~~C~~C~~~~-~~~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERNGDT--------AHCETCAKDF-SLQALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEECSSE--------EECTTTCCEE-EEEEECSSSCSCCC
T ss_pred CCCCCCCCccccCCCc--------eECccccccC-CCcccCcchhhHHH
Confidence 3577777665543222 2233332221 22225777766664
No 210
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=27.56 E-value=49 Score=21.90 Aligned_cols=50 Identities=12% Similarity=0.252 Sum_probs=33.7
Q ss_pred CCCcCccccccccc-CccEEEcCCCCCcccHhhHHHHhcCCCccccccccccC
Q 029544 85 EDAECSICLGEYQD-KEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 85 ~~~~C~IC~~~~~~-~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
+-+.|..|...+.. +.... . .=+..||..|..+.+.....|..|...+..
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~-~-~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLY-Y-KLGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEE-E-ETTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred HHcccCcCCCccccCCCeEE-E-ECCEEeecCchhhhCCCccChhhcCCccCc
Confidence 46778888888753 21111 1 367789999988765544479999988864
No 211
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=27.37 E-value=13 Score=22.46 Aligned_cols=18 Identities=33% Similarity=0.676 Sum_probs=11.7
Q ss_pred HHhcCCCccccccccccC
Q 029544 119 IWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 119 ~wl~~~~~CP~Cr~~~~~ 136 (191)
+|+..--.||.|+.++.-
T Consensus 3 ~~LLeiL~CP~ck~~L~~ 20 (69)
T 2pk7_A 3 TKLLDILACPICKGPLKL 20 (69)
T ss_dssp CCGGGTCCCTTTCCCCEE
T ss_pred hHHHhheeCCCCCCcCeE
Confidence 344455568888877653
No 212
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.30 E-value=1e+02 Score=18.30 Aligned_cols=40 Identities=20% Similarity=0.382 Sum_probs=26.2
Q ss_pred CCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCcccccccccc
Q 029544 86 DAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQ 135 (191)
Q Consensus 86 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~ 135 (191)
...|..|-..+.....+.. .-+..||..| ..|-.|+.+|.
T Consensus 15 ~~~C~~C~~~I~~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~ 54 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELF--YEDRHFHEGC--------FRCCRCQRSLA 54 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCC--CSSCCCBTTT--------SBCTTTCCBCS
T ss_pred CCcCccCCCccccCcEEEE--eCCccccccC--------CeecCCCCccC
Confidence 3469999888773222211 2467788877 56888888775
No 213
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=27.24 E-value=12 Score=22.53 Aligned_cols=18 Identities=28% Similarity=0.336 Sum_probs=12.6
Q ss_pred HHhcCCCccccccccccC
Q 029544 119 IWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 119 ~wl~~~~~CP~Cr~~~~~ 136 (191)
+|+..--.||+|+.++..
T Consensus 5 ~~LLeiL~CP~ck~~L~~ 22 (67)
T 2jny_A 5 PQLLEVLACPKDKGPLRY 22 (67)
T ss_dssp GGGTCCCBCTTTCCBCEE
T ss_pred HHHHHHhCCCCCCCcCeE
Confidence 455556679999987753
No 214
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=27.14 E-value=47 Score=21.57 Aligned_cols=37 Identities=11% Similarity=0.090 Sum_probs=21.8
Q ss_pred CCCcCccccccccc-CccEEEcCCCCCcccHhhHHHHhcC
Q 029544 85 EDAECSICLGEYQD-KEVLRIMPQCGHSFHLACIDIWLRK 123 (191)
Q Consensus 85 ~~~~C~IC~~~~~~-~~~~~~~~~C~H~f~~~Ci~~wl~~ 123 (191)
+-+.|..|...+.. +... .. .=+..||..|..+.+..
T Consensus 29 ~CF~C~~C~~~L~~~g~~~-~~-~~g~~yC~~~y~~~f~~ 66 (114)
T 1j2o_A 29 DCLSCDLCGCRLGEVGRRL-YY-KLGRKLCRRDYLRLGGS 66 (114)
T ss_dssp TTCCCSSSCSCCCCSSSCC-CC-BTTBCCCHHHHHHHHTS
T ss_pred hcCcccccCCchhcCCCee-EE-ECCeeechHHHHHHhCc
Confidence 45678888777763 1111 01 35667888887776543
No 215
>1fdm_A FD coat protein, FD major coat protein; membrane protein, micelles, viral protein; NMR {Enterobacteria phage FD} SCOP: h.1.4.1 PDB: 1ifd_A 1ifi_A 1ifj_A 1mzt_A 2hi5_A 2cpb_A 2cps_A
Probab=26.93 E-value=70 Score=17.85 Aligned_cols=14 Identities=14% Similarity=0.767 Sum_probs=7.0
Q ss_pred CCCCchhHHHHHHHHHHH
Q 029544 1 MWGSGMNLITTVIGFGMS 18 (191)
Q Consensus 1 ~~g~~~~~v~~~i~~~~~ 18 (191)
||| +++.+++.+++
T Consensus 25 ~W~----vv~~vvva~ig 38 (50)
T 1fdm_A 25 AWA----MVVVIVGATIG 38 (50)
T ss_dssp TTT----HHHHHHHHHHH
T ss_pred hhh----hhhhhhehhhh
Confidence 577 44444444443
No 216
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=26.15 E-value=60 Score=19.10 Aligned_cols=40 Identities=25% Similarity=0.551 Sum_probs=27.8
Q ss_pred CCcCccccccccc---C-ccEEEcCCCCCcccHhhHHHHhcCCCccccccccccC
Q 029544 86 DAECSICLGEYQD---K-EVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 86 ~~~C~IC~~~~~~---~-~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
...|+-|-..+.. . ..+. .-+..||..| ..|-.|+.++..
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~---a~~~~~H~~C--------F~C~~C~~~L~~ 58 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVA---YEGQSWHDYC--------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEE---ETTEEEETTT--------CBCSSSCCBCTT
T ss_pred CccCcccCCcccCCCCCceeEE---ECcceeCccc--------CEehhcCCCCCC
Confidence 3569999988774 2 3332 2567888888 568899888753
No 217
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=26.02 E-value=26 Score=20.38 Aligned_cols=15 Identities=20% Similarity=0.698 Sum_probs=9.6
Q ss_pred CCccccccccccCCC
Q 029544 124 KTTCPVCRLPLQDPL 138 (191)
Q Consensus 124 ~~~CP~Cr~~~~~~~ 138 (191)
.+.||.|+..+....
T Consensus 6 ~k~CP~C~~~Iek~~ 20 (60)
T 1wd2_A 6 TKECPKCHVTIEKDG 20 (60)
T ss_dssp CCCCTTTCCCCSSCC
T ss_pred ceECcCCCCeeEeCC
Confidence 345888877776543
No 218
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=25.37 E-value=63 Score=20.36 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=18.7
Q ss_pred CCCcCccccccccc--CccEEEcCCCCCcccHh
Q 029544 85 EDAECSICLGEYQD--KEVLRIMPQCGHSFHLA 115 (191)
Q Consensus 85 ~~~~C~IC~~~~~~--~~~~~~~~~C~H~f~~~ 115 (191)
....|..|...+.. +... .|+..||..
T Consensus 24 ~~~rC~~C~kkvgl~~~f~C----rCg~~FC~~ 52 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFEC----RCGNNFCAS 52 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEEC----TTCCEECTT
T ss_pred cCccchhhCCeecccCCeEc----CCCCEeccc
Confidence 44679999987554 3333 599999844
No 219
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=24.12 E-value=28 Score=25.02 Aligned_cols=48 Identities=15% Similarity=0.249 Sum_probs=23.7
Q ss_pred CCcCccccccccc-CccEEEcCCCCCcccHhhHHHHhcCCCcccccccccc
Q 029544 86 DAECSICLGEYQD-KEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQ 135 (191)
Q Consensus 86 ~~~C~IC~~~~~~-~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~ 135 (191)
-+.|..|...+.. +.... . .=+..||..|..+.+.....|..|...+.
T Consensus 32 CF~C~~C~~~L~~~g~~~~-~-~~g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 32 CLKCSSCQAQLGDIGTSSY-T-KSGMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp GCBCTTTCCBHHHHCSEEE-E-ETTEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred CcccCCCCcccccCCceEE-E-eCCccccccccccccccCCccccCCCccc
Confidence 4556666665553 11111 1 24556666666554433224666666554
No 220
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=22.61 E-value=73 Score=22.23 Aligned_cols=48 Identities=15% Similarity=0.239 Sum_probs=35.1
Q ss_pred CCCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccCC
Q 029544 84 VEDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQDP 137 (191)
Q Consensus 84 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~~ 137 (191)
.+-+.|..|...+...... .=+..||..|..+.+ ...|..|...+...
T Consensus 31 ~~CF~C~~C~~~L~~~~f~----~~g~~yC~~~y~~~f--~~~C~~C~~~I~~~ 78 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCFS----RGESVYCKDDFFKRF--GTKCAACQLGIPPT 78 (169)
T ss_dssp TTTSBCTTTCCBCCSCCEE----SSSCEECHHHHHHHH--SCBCTTTCCBCCTT
T ss_pred cccCccCCCCCcCCCCCcc----cCCeeeecccccccc--cccccccccccCCC
Confidence 3567889998888765432 467889999987754 35699999888653
No 221
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=21.86 E-value=73 Score=20.86 Aligned_cols=47 Identities=11% Similarity=0.154 Sum_probs=33.1
Q ss_pred CCCcCcccccccccCccEEEcCCCCCcccHhhHHHHhcCCCccccccccccC
Q 029544 85 EDAECSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLRKKTTCPVCRLPLQD 136 (191)
Q Consensus 85 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~~~~ 136 (191)
+-+.|..|...+....-.. .-+..+|..|..+. ....|..|..++..
T Consensus 29 ~CF~C~~C~~~L~~~~f~~---~~g~~yC~~cy~~~--~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVM---VNDKPVCKPCYVKN--HAVVCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEE---ETTEEEEHHHHHHH--SCCBCTTTCSBCCT
T ss_pred CCCCcCCCCCCCCcCEEEe---ECCEEechHHhCcC--cCccCcccCCcCCc
Confidence 4567888888876542221 36778999998764 34669999998874
No 222
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=20.83 E-value=13 Score=24.60 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=25.3
Q ss_pred CcccccccccCccEEEcCCCCCcccHhhHHHHhc--------CCCccccccc
Q 029544 89 CSICLGEYQDKEVLRIMPQCGHSFHLACIDIWLR--------KKTTCPVCRL 132 (191)
Q Consensus 89 C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~wl~--------~~~~CP~Cr~ 132 (191)
|..|.........+..-..|...||..|...... ..-.||.|+.
T Consensus 62 c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 62 VDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp BCCHHHHCCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred ccccccccccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 4444444444444444446999999999764321 1134888864
No 223
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=20.70 E-value=45 Score=23.79 Aligned_cols=21 Identities=38% Similarity=0.819 Sum_probs=12.8
Q ss_pred CCCCCcccHhhHHHHhcCCCcccccccc
Q 029544 106 PQCGHSFHLACIDIWLRKKTTCPVCRLP 133 (191)
Q Consensus 106 ~~C~H~f~~~Ci~~wl~~~~~CP~Cr~~ 133 (191)
+.|||++-. .....||+|..+
T Consensus 142 ~~CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 142 PICGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp TTTCCEEES-------CCCSBCTTTCCB
T ss_pred CCCCCeeCC-------CCCCCCCCCCCC
Confidence 358876641 223479999754
No 224
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=20.48 E-value=49 Score=18.91 Aligned_cols=37 Identities=22% Similarity=0.476 Sum_probs=24.9
Q ss_pred cCcccccccccC-ccEEEcCCCCCccc--HhhHHHHhcCCCcccccccccc
Q 029544 88 ECSICLGEYQDK-EVLRIMPQCGHSFH--LACIDIWLRKKTTCPVCRLPLQ 135 (191)
Q Consensus 88 ~C~IC~~~~~~~-~~~~~~~~C~H~f~--~~Ci~~wl~~~~~CP~Cr~~~~ 135 (191)
.|+-|-..+... ..+. .-+..|| ..| ..|-.|+.++.
T Consensus 4 ~C~~C~~~I~~~~~~v~---a~~~~wH~~~~C--------F~C~~C~~~L~ 43 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVT---YNNFSWHASTEC--------FLCSCCSKCLI 43 (65)
T ss_dssp ECTTTSSEECTTSCEEE---ETTEEEETTTTT--------SBCTTTCCBCT
T ss_pred CCcCCCCeeccCceEEE---ECCCccCCCCCC--------EECCCCCCcCC
Confidence 578888877753 2332 3567788 777 56888887775
No 225
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=20.22 E-value=1.1e+02 Score=21.98 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 029544 8 LITTVIGFGMSAAFIVFICTRIICR 32 (191)
Q Consensus 8 ~v~~~i~~~~~~~li~~~~~~~~~~ 32 (191)
++.++|-|++.+++++|++++.+.+
T Consensus 95 Fi~avInFlIIA~vIYFliVk~iNk 119 (174)
T 2oar_A 95 LLSAAINFFLIAFAVYFLVVLPYNT 119 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555445554666665554
Done!