Query 029545
Match_columns 191
No_of_seqs 297 out of 1829
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 14:38:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029545.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029545hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0910 Thioredoxin-like prote 99.9 1.1E-26 2.3E-31 170.7 11.9 106 79-189 42-149 (150)
2 KOG0907 Thioredoxin [Posttrans 99.9 8.4E-25 1.8E-29 154.4 12.6 102 84-187 4-105 (106)
3 cd02985 TRX_CDSP32 TRX family, 99.9 1.7E-23 3.7E-28 147.4 13.9 99 86-186 2-101 (103)
4 cd02954 DIM1 Dim1 family; Dim1 99.9 2.4E-23 5.1E-28 148.3 14.1 99 87-189 2-112 (114)
5 PF00085 Thioredoxin: Thioredo 99.9 6.1E-23 1.3E-27 143.0 13.7 100 83-187 2-103 (103)
6 PHA02278 thioredoxin-like prot 99.9 4.3E-23 9.3E-28 145.3 12.8 95 85-183 2-100 (103)
7 cd03006 PDI_a_EFP1_N PDIa fami 99.9 3.3E-23 7.1E-28 148.2 12.0 102 79-184 9-113 (113)
8 cd02948 TRX_NDPK TRX domain, T 99.9 6.9E-23 1.5E-27 144.0 13.5 98 83-187 3-102 (102)
9 cd03065 PDI_b_Calsequestrin_N 99.9 2.9E-22 6.2E-27 144.5 13.2 105 77-188 7-119 (120)
10 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 1.6E-22 3.5E-27 141.5 11.0 96 81-183 3-100 (101)
11 cd02956 ybbN ybbN protein fami 99.9 2.4E-22 5.3E-27 139.1 11.6 93 89-185 2-96 (96)
12 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 2E-22 4.3E-27 141.6 11.2 95 85-184 6-104 (104)
13 PLN00410 U5 snRNP protein, DIM 99.9 4.1E-22 8.8E-27 147.1 12.9 104 82-189 6-121 (142)
14 KOG0908 Thioredoxin-like prote 99.9 1.6E-22 3.4E-27 158.8 11.2 107 80-190 2-108 (288)
15 cd02963 TRX_DnaJ TRX domain, D 99.9 5.9E-22 1.3E-26 141.3 11.3 99 86-187 10-111 (111)
16 COG3118 Thioredoxin domain-con 99.9 3.7E-22 7.9E-27 161.1 11.3 107 80-190 24-132 (304)
17 cd02999 PDI_a_ERp44_like PDIa 99.9 5.7E-22 1.2E-26 138.9 10.7 92 88-184 7-100 (100)
18 cd02989 Phd_like_TxnDC9 Phosdu 99.9 3.8E-21 8.3E-26 137.6 14.7 92 78-175 3-94 (113)
19 cd02986 DLP Dim1 family, Dim1- 99.9 2.6E-21 5.6E-26 137.1 13.0 100 87-190 2-113 (114)
20 PRK09381 trxA thioredoxin; Pro 99.9 6.5E-21 1.4E-25 135.0 13.7 105 79-189 3-109 (109)
21 PRK10996 thioredoxin 2; Provis 99.9 1.2E-20 2.7E-25 139.7 15.7 103 79-188 35-139 (139)
22 cd02984 TRX_PICOT TRX domain, 99.9 5.6E-21 1.2E-25 132.3 12.3 96 86-185 1-97 (97)
23 PTZ00051 thioredoxin; Provisio 99.9 8.3E-21 1.8E-25 131.8 13.0 96 81-182 2-97 (98)
24 cd02996 PDI_a_ERp44 PDIa famil 99.9 3.5E-21 7.5E-26 136.4 11.2 97 81-184 3-108 (108)
25 cd03002 PDI_a_MPD1_like PDI fa 99.9 5.2E-21 1.1E-25 135.2 11.4 98 84-184 4-108 (109)
26 cd02957 Phd_like Phosducin (Ph 99.9 1.3E-20 2.7E-25 134.8 13.3 92 79-175 4-95 (113)
27 cd02994 PDI_a_TMX PDIa family, 99.9 1.1E-20 2.5E-25 132.0 12.0 97 80-186 2-101 (101)
28 PTZ00443 Thioredoxin domain-co 99.9 1.6E-20 3.5E-25 148.9 13.8 109 79-190 30-141 (224)
29 cd02950 TxlA TRX-like protein 99.8 1.6E-20 3.5E-25 139.6 12.2 99 88-190 11-112 (142)
30 cd03005 PDI_a_ERp46 PDIa famil 99.8 1.7E-20 3.7E-25 130.9 11.6 93 85-184 5-102 (102)
31 cd02962 TMX2 TMX2 family; comp 99.8 4.4E-20 9.5E-25 138.4 13.9 92 79-175 28-127 (152)
32 cd02965 HyaE HyaE family; HyaE 99.8 3.8E-20 8.3E-25 131.1 11.6 90 86-181 16-109 (111)
33 TIGR01068 thioredoxin thioredo 99.8 8.9E-20 1.9E-24 126.4 12.9 98 86-188 2-101 (101)
34 cd02997 PDI_a_PDIR PDIa family 99.8 5.8E-20 1.3E-24 128.5 11.8 95 86-184 6-104 (104)
35 cd03001 PDI_a_P5 PDIa family, 99.8 1E-19 2.2E-24 127.1 12.1 96 84-184 4-102 (103)
36 cd02987 Phd_like_Phd Phosducin 99.8 1.7E-19 3.8E-24 138.4 13.6 106 77-186 60-173 (175)
37 TIGR01126 pdi_dom protein disu 99.8 1.4E-19 3E-24 125.9 11.3 96 86-187 2-101 (102)
38 cd02949 TRX_NTR TRX domain, no 99.8 4.9E-19 1.1E-23 123.1 11.4 85 99-185 11-97 (97)
39 cd02993 PDI_a_APS_reductase PD 99.8 3.8E-19 8.3E-24 126.3 10.9 99 84-184 5-109 (109)
40 cd02953 DsbDgamma DsbD gamma f 99.8 1.6E-19 3.4E-24 127.0 8.8 94 88-185 2-104 (104)
41 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 3E-19 6.4E-24 124.8 10.1 95 84-184 4-104 (104)
42 cd02975 PfPDO_like_N Pyrococcu 99.8 7.3E-19 1.6E-23 125.8 12.1 89 99-189 20-111 (113)
43 cd03000 PDI_a_TMX3 PDIa family 99.8 5.3E-19 1.1E-23 124.4 9.9 92 88-187 7-103 (104)
44 KOG0190 Protein disulfide isom 99.8 3.5E-19 7.5E-24 153.7 9.4 105 78-188 23-132 (493)
45 cd02998 PDI_a_ERp38 PDIa famil 99.8 1.1E-18 2.3E-23 122.0 10.0 94 86-184 6-105 (105)
46 TIGR01295 PedC_BrcD bacterioci 99.8 4E-18 8.6E-23 123.6 13.0 96 85-185 11-121 (122)
47 cd02951 SoxW SoxW family; SoxW 99.8 1.8E-18 3.9E-23 125.5 10.7 94 97-190 9-121 (125)
48 cd02992 PDI_a_QSOX PDIa family 99.8 7.5E-19 1.6E-23 125.9 8.3 89 83-175 4-96 (114)
49 PTZ00062 glutaredoxin; Provisi 99.8 4.4E-18 9.6E-23 133.1 12.5 92 85-189 4-95 (204)
50 cd02961 PDI_a_family Protein D 99.8 3.3E-18 7.1E-23 117.8 9.9 93 86-184 4-101 (101)
51 TIGR00424 APS_reduc 5'-adenyly 99.8 8.3E-18 1.8E-22 145.5 13.0 106 81-187 352-462 (463)
52 cd02947 TRX_family TRX family; 99.8 1.7E-17 3.6E-22 112.2 11.6 90 89-184 2-92 (93)
53 cd02988 Phd_like_VIAF Phosduci 99.8 2E-17 4.4E-22 128.6 13.0 103 77-186 80-190 (192)
54 cd02952 TRP14_like Human TRX-r 99.7 1.8E-17 4E-22 119.2 10.7 99 84-184 6-118 (119)
55 cd03007 PDI_a_ERp29_N PDIa fam 99.7 1.4E-17 3E-22 119.1 9.8 98 83-187 4-115 (116)
56 PLN02309 5'-adenylylsulfate re 99.7 2.7E-17 5.9E-22 142.3 13.0 104 81-187 346-456 (457)
57 PTZ00102 disulphide isomerase; 99.7 5.6E-17 1.2E-21 141.7 13.5 101 82-189 34-139 (477)
58 PTZ00102 disulphide isomerase; 99.7 3.5E-17 7.6E-22 142.9 11.8 107 79-190 356-467 (477)
59 TIGR01130 ER_PDI_fam protein d 99.7 7E-17 1.5E-21 140.0 12.9 101 83-189 4-110 (462)
60 PRK00293 dipZ thiol:disulfide 99.7 6.5E-17 1.4E-21 144.3 12.4 111 78-188 451-570 (571)
61 KOG0190 Protein disulfide isom 99.7 2.8E-17 6.1E-22 141.9 7.5 101 80-187 366-472 (493)
62 cd02959 ERp19 Endoplasmic reti 99.7 2.3E-17 5.1E-22 118.7 5.4 100 89-189 7-114 (117)
63 KOG4277 Uncharacterized conser 99.7 5.9E-17 1.3E-21 130.9 7.7 97 88-187 31-131 (468)
64 TIGR02187 GlrX_arch Glutaredox 99.7 2.1E-16 4.5E-21 125.1 9.5 137 37-186 72-214 (215)
65 TIGR00411 redox_disulf_1 small 99.7 1.3E-15 2.8E-20 102.1 10.7 79 104-188 2-82 (82)
66 TIGR02187 GlrX_arch Glutaredox 99.7 2E-15 4.3E-20 119.5 12.9 87 102-188 20-111 (215)
67 cd02982 PDI_b'_family Protein 99.6 8E-16 1.7E-20 107.4 8.4 86 101-188 12-103 (103)
68 KOG0191 Thioredoxin/protein di 99.6 8.8E-16 1.9E-20 131.2 8.6 166 16-189 77-253 (383)
69 PF13098 Thioredoxin_2: Thiore 99.6 1.2E-15 2.6E-20 108.2 7.1 87 98-184 2-112 (112)
70 TIGR01130 ER_PDI_fam protein d 99.6 3.7E-15 8E-20 129.2 10.7 103 80-189 346-455 (462)
71 PHA02125 thioredoxin-like prot 99.6 8.9E-15 1.9E-19 97.1 9.7 70 105-184 2-73 (75)
72 cd02958 UAS UAS family; UAS is 99.6 3.4E-14 7.4E-19 101.5 10.9 102 88-189 4-112 (114)
73 PRK15412 thiol:disulfide inter 99.6 2.6E-14 5.6E-19 110.6 10.6 89 100-190 67-178 (185)
74 TIGR02738 TrbB type-F conjugat 99.6 3.4E-14 7.3E-19 106.8 10.2 87 101-188 50-153 (153)
75 KOG0912 Thiol-disulfide isomer 99.6 1.2E-14 2.6E-19 117.6 8.0 96 88-189 4-107 (375)
76 cd02955 SSP411 TRX domain, SSP 99.5 3.8E-14 8.2E-19 102.9 9.4 92 94-187 8-118 (124)
77 TIGR00412 redox_disulf_2 small 99.5 5.3E-14 1.2E-18 93.6 8.8 71 105-184 2-75 (76)
78 TIGR00385 dsbE periplasmic pro 99.5 9.9E-14 2.2E-18 106.2 11.5 89 100-190 62-173 (173)
79 TIGR02740 TraF-like TraF-like 99.5 2.1E-13 4.6E-18 111.4 13.4 89 100-189 165-265 (271)
80 KOG0191 Thioredoxin/protein di 99.5 4.7E-14 1E-18 120.6 9.4 89 99-189 45-135 (383)
81 PRK14018 trifunctional thiored 99.5 1.4E-13 3E-18 120.8 11.8 87 100-186 55-171 (521)
82 cd02973 TRX_GRX_like Thioredox 99.5 3E-13 6.5E-18 87.4 8.5 62 104-169 2-63 (67)
83 cd03010 TlpA_like_DsbE TlpA-li 99.5 2.8E-13 6.1E-18 98.2 8.8 80 100-180 24-126 (127)
84 cd03008 TryX_like_RdCVF Trypar 99.5 2.6E-13 5.6E-18 101.1 8.7 72 100-171 24-128 (146)
85 KOG1731 FAD-dependent sulfhydr 99.5 2.6E-14 5.7E-19 123.9 3.7 105 79-187 39-152 (606)
86 PF13905 Thioredoxin_8: Thiore 99.5 3.1E-13 6.7E-18 93.0 8.2 67 101-167 1-94 (95)
87 PRK03147 thiol-disulfide oxido 99.5 7.3E-13 1.6E-17 100.7 11.0 88 100-187 60-171 (173)
88 PRK13728 conjugal transfer pro 99.4 1.3E-12 2.8E-17 100.2 11.4 85 105-190 73-173 (181)
89 cd03009 TryX_like_TryX_NRX Try 99.4 3.8E-13 8.3E-18 98.1 8.1 72 100-171 17-115 (131)
90 PRK11509 hydrogenase-1 operon 99.4 3.6E-12 7.7E-17 93.0 12.8 97 88-190 25-126 (132)
91 smart00594 UAS UAS domain. 99.4 1.2E-12 2.6E-17 94.7 9.9 97 88-184 14-121 (122)
92 COG4232 Thiol:disulfide interc 99.4 6.9E-13 1.5E-17 116.1 9.6 104 82-187 457-567 (569)
93 cd03011 TlpA_like_ScsD_MtbDsbE 99.4 1.5E-12 3.3E-17 93.6 9.7 81 100-183 19-121 (123)
94 cd02964 TryX_like_family Trypa 99.4 7.8E-13 1.7E-17 96.7 8.2 72 100-171 16-115 (132)
95 PLN02919 haloacid dehalogenase 99.4 1.8E-12 3.9E-17 122.9 11.7 90 100-189 419-537 (1057)
96 cd03026 AhpF_NTD_C TRX-GRX-lik 99.4 4E-12 8.7E-17 87.1 9.7 74 101-180 12-86 (89)
97 cd02960 AGR Anterior Gradient 99.4 1.1E-12 2.4E-17 95.5 6.6 85 88-175 10-99 (130)
98 cd02966 TlpA_like_family TlpA- 99.3 8.4E-12 1.8E-16 87.2 9.0 74 101-174 19-116 (116)
99 cd02967 mauD Methylamine utili 99.3 1.6E-11 3.4E-16 87.1 8.6 71 100-170 20-110 (114)
100 PF13899 Thioredoxin_7: Thiore 99.3 5.8E-12 1.3E-16 84.8 5.9 74 88-164 4-81 (82)
101 cd03012 TlpA_like_DipZ_like Tl 99.3 2.7E-11 5.9E-16 87.8 9.5 76 100-175 22-125 (126)
102 PLN02399 phospholipid hydroper 99.3 3.1E-11 6.8E-16 96.6 10.4 90 100-189 98-235 (236)
103 PTZ00056 glutathione peroxidas 99.3 2.6E-11 5.7E-16 94.9 9.7 91 100-190 38-180 (199)
104 PF08534 Redoxin: Redoxin; In 99.3 4.1E-11 8.9E-16 88.7 9.3 83 100-182 27-144 (146)
105 TIGR02661 MauD methylamine deh 99.2 9.8E-11 2.1E-15 90.9 10.4 87 100-187 73-178 (189)
106 TIGR01626 ytfJ_HI0045 conserve 99.2 1.1E-10 2.4E-15 90.0 9.7 82 100-183 58-175 (184)
107 KOG0914 Thioredoxin-like prote 99.2 2.4E-11 5.3E-16 94.3 5.9 93 77-173 122-222 (265)
108 PLN02412 probable glutathione 99.2 2E-10 4.4E-15 87.4 10.5 90 101-190 29-166 (167)
109 PF02114 Phosducin: Phosducin; 99.2 2.1E-10 4.5E-15 93.4 9.6 106 78-187 124-237 (265)
110 TIGR02196 GlrX_YruB Glutaredox 99.2 2.3E-10 5E-15 74.3 8.1 71 105-185 2-74 (74)
111 cd02991 UAS_ETEA UAS family, E 99.1 1E-09 2.2E-14 78.8 11.4 101 88-190 4-115 (116)
112 cd00340 GSH_Peroxidase Glutath 99.1 3.4E-10 7.4E-15 84.8 9.2 83 100-183 21-151 (152)
113 TIGR02540 gpx7 putative glutat 99.1 8.2E-10 1.8E-14 82.7 9.7 89 100-188 21-153 (153)
114 COG0526 TrxA Thiol-disulfide i 99.1 5.8E-10 1.3E-14 77.2 8.0 85 101-187 32-123 (127)
115 cd02969 PRX_like1 Peroxiredoxi 99.1 2.1E-09 4.6E-14 81.8 11.2 90 100-189 24-153 (171)
116 KOG1672 ATP binding protein [P 99.1 1.1E-09 2.3E-14 83.8 8.8 94 76-175 63-156 (211)
117 PF06110 DUF953: Eukaryotic pr 99.0 2.8E-09 6.1E-14 76.5 9.1 99 84-185 2-118 (119)
118 KOG3414 Component of the U4/U6 99.0 1.3E-08 2.9E-13 72.5 10.6 103 83-189 7-121 (142)
119 COG2143 Thioredoxin-related pr 98.9 1.2E-08 2.7E-13 75.5 10.6 93 95-187 36-148 (182)
120 cd03014 PRX_Atyp2cys Peroxired 98.9 7.5E-09 1.6E-13 76.3 9.1 84 101-184 26-141 (143)
121 PTZ00256 glutathione peroxidas 98.9 8.6E-09 1.9E-13 79.6 9.7 89 101-189 40-182 (183)
122 cd03017 PRX_BCP Peroxiredoxin 98.9 7.7E-09 1.7E-13 75.7 8.4 84 101-184 23-139 (140)
123 TIGR02200 GlrX_actino Glutared 98.9 8.4E-09 1.8E-13 67.8 7.8 70 105-185 2-76 (77)
124 KOG2501 Thioredoxin, nucleored 98.9 3.2E-09 6.8E-14 79.2 6.2 71 100-170 32-130 (157)
125 PF14595 Thioredoxin_9: Thiore 98.9 6.1E-09 1.3E-13 76.1 7.6 84 100-186 40-127 (129)
126 PRK00522 tpx lipid hydroperoxi 98.9 1.5E-08 3.2E-13 77.2 10.0 74 101-174 44-149 (167)
127 cd01659 TRX_superfamily Thiore 98.9 9.2E-09 2E-13 63.4 7.3 60 105-166 1-63 (69)
128 PF13728 TraF: F plasmid trans 98.9 4.8E-08 1E-12 77.4 11.9 94 88-184 109-214 (215)
129 KOG0913 Thiol-disulfide isomer 98.8 8.6E-10 1.9E-14 86.6 1.3 97 81-186 25-124 (248)
130 PF13192 Thioredoxin_3: Thiore 98.8 5.7E-08 1.2E-12 64.4 9.5 72 106-185 3-76 (76)
131 PF00578 AhpC-TSA: AhpC/TSA fa 98.8 2.2E-08 4.7E-13 71.7 7.6 70 100-169 24-122 (124)
132 PRK11200 grxA glutaredoxin 1; 98.8 5.6E-08 1.2E-12 65.7 9.1 79 104-189 2-84 (85)
133 KOG0911 Glutaredoxin-related p 98.8 4.1E-09 8.9E-14 82.4 3.7 99 81-187 3-101 (227)
134 PF02966 DIM1: Mitosis protein 98.8 1.3E-07 2.9E-12 68.2 11.1 102 82-188 3-117 (133)
135 KOG3425 Uncharacterized conser 98.8 3.5E-08 7.6E-13 69.9 7.7 80 85-165 10-104 (128)
136 cd03015 PRX_Typ2cys Peroxiredo 98.8 6.7E-08 1.4E-12 73.8 9.8 87 101-187 29-156 (173)
137 PRK10606 btuE putative glutath 98.8 4.1E-08 9E-13 75.9 8.6 89 100-189 24-182 (183)
138 TIGR03137 AhpC peroxiredoxin. 98.7 1.1E-07 2.4E-12 73.7 9.9 86 101-186 31-154 (187)
139 PF03190 Thioredox_DsbH: Prote 98.7 4.2E-08 9E-13 74.0 7.2 77 93-171 29-118 (163)
140 TIGR02180 GRX_euk Glutaredoxin 98.7 1.1E-07 2.3E-12 63.5 7.9 62 105-169 1-65 (84)
141 TIGR02739 TraF type-F conjugat 98.7 3.7E-07 8E-12 73.9 12.0 97 89-188 140-248 (256)
142 PRK09437 bcp thioredoxin-depen 98.7 1.7E-07 3.8E-12 70.0 9.5 86 100-185 29-150 (154)
143 cd02970 PRX_like2 Peroxiredoxi 98.7 1.4E-07 2.9E-12 69.6 8.9 42 102-143 24-68 (149)
144 cd02976 NrdH NrdH-redoxin (Nrd 98.7 1.9E-07 4E-12 60.2 8.2 70 105-184 2-73 (73)
145 cd03018 PRX_AhpE_like Peroxire 98.6 2.4E-07 5.3E-12 68.5 8.9 83 102-184 29-147 (149)
146 TIGR02183 GRXA Glutaredoxin, G 98.6 3.4E-07 7.4E-12 62.1 8.6 77 105-188 2-82 (86)
147 PRK13703 conjugal pilus assemb 98.6 8.7E-07 1.9E-11 71.4 12.1 97 89-188 133-241 (248)
148 PRK10877 protein disulfide iso 98.6 7.4E-07 1.6E-11 71.4 10.2 83 99-187 105-230 (232)
149 PRK15000 peroxidase; Provision 98.5 8.9E-07 1.9E-11 69.4 10.2 88 100-187 33-161 (200)
150 PRK10382 alkyl hydroperoxide r 98.5 1.3E-06 2.8E-11 67.8 10.6 87 101-187 31-155 (187)
151 cd02968 SCO SCO (an acronym fo 98.5 6.1E-07 1.3E-11 65.7 7.3 43 100-142 21-69 (142)
152 cd02971 PRX_family Peroxiredox 98.5 9.9E-07 2.1E-11 64.4 8.2 77 100-176 21-130 (140)
153 PRK13190 putative peroxiredoxi 98.5 1.6E-06 3.4E-11 68.0 9.7 88 101-188 27-154 (202)
154 cd03023 DsbA_Com1_like DsbA fa 98.5 2.1E-06 4.5E-11 63.3 9.8 40 100-139 4-43 (154)
155 TIGR03143 AhpF_homolog putativ 98.4 2E-06 4.3E-11 77.2 11.2 78 101-184 475-554 (555)
156 PF11009 DUF2847: Protein of u 98.4 3.9E-06 8.5E-11 58.8 10.2 97 82-180 2-104 (105)
157 cd03020 DsbA_DsbC_DsbG DsbA fa 98.4 2.2E-06 4.7E-11 66.8 8.8 79 99-184 75-197 (197)
158 PRK10329 glutaredoxin-like pro 98.3 8.7E-06 1.9E-10 54.6 9.8 74 105-188 3-77 (81)
159 KOG3171 Conserved phosducin-li 98.3 1.5E-06 3.2E-11 67.7 6.3 107 77-187 136-250 (273)
160 PF13848 Thioredoxin_6: Thiore 98.3 2E-05 4.3E-10 60.0 12.4 139 38-186 37-184 (184)
161 PTZ00137 2-Cys peroxiredoxin; 98.3 7.7E-06 1.7E-10 66.6 10.6 87 101-187 98-224 (261)
162 cd03419 GRX_GRXh_1_2_like Glut 98.3 5.4E-06 1.2E-10 55.0 8.2 60 105-169 2-64 (82)
163 PF00462 Glutaredoxin: Glutare 98.3 3.1E-06 6.8E-11 53.1 6.6 58 105-169 1-60 (60)
164 PRK15317 alkyl hydroperoxide r 98.3 6.8E-06 1.5E-10 73.1 11.0 79 102-186 117-196 (517)
165 TIGR02194 GlrX_NrdH Glutaredox 98.3 6.5E-06 1.4E-10 53.7 7.5 70 105-183 1-71 (72)
166 PRK13599 putative peroxiredoxi 98.3 8.7E-06 1.9E-10 64.5 9.5 87 101-187 28-155 (215)
167 PRK13191 putative peroxiredoxi 98.2 1.1E-05 2.3E-10 64.0 9.7 87 101-187 33-160 (215)
168 PRK13189 peroxiredoxin; Provis 98.2 8.9E-06 1.9E-10 64.8 9.2 88 101-188 35-163 (222)
169 PRK11657 dsbG disulfide isomer 98.2 7E-06 1.5E-10 66.6 8.5 85 100-185 116-249 (251)
170 TIGR02190 GlrX-dom Glutaredoxi 98.2 1.3E-05 2.8E-10 53.3 8.2 61 102-169 7-68 (79)
171 PHA03050 glutaredoxin; Provisi 98.2 3.2E-06 6.9E-11 59.8 5.4 61 105-169 15-80 (108)
172 cd03016 PRX_1cys Peroxiredoxin 98.2 1.9E-05 4.2E-10 61.9 10.2 86 103-188 28-154 (203)
173 PF13462 Thioredoxin_4: Thiore 98.2 2.4E-05 5.1E-10 58.4 10.1 82 100-186 11-162 (162)
174 PTZ00253 tryparedoxin peroxida 98.2 2.7E-05 5.9E-10 60.8 10.2 87 101-187 36-163 (199)
175 cd03019 DsbA_DsbA DsbA family, 98.1 2.1E-05 4.6E-10 59.6 9.1 37 100-136 14-51 (178)
176 PF01216 Calsequestrin: Calseq 98.1 5.6E-05 1.2E-09 63.1 11.7 105 77-190 32-146 (383)
177 PRK10954 periplasmic protein d 98.1 3E-05 6.5E-10 61.0 9.8 40 101-140 37-80 (207)
178 cd03029 GRX_hybridPRX5 Glutare 98.1 3.8E-05 8.2E-10 49.9 8.4 68 105-184 3-71 (72)
179 TIGR03140 AhpF alkyl hydropero 98.1 4E-05 8.6E-10 68.2 11.2 80 102-187 118-198 (515)
180 cd02066 GRX_family Glutaredoxi 98.1 2.1E-05 4.6E-10 50.1 7.0 59 105-170 2-62 (72)
181 TIGR02189 GlrX-like_plant Glut 98.0 1.1E-05 2.3E-10 56.2 4.9 58 105-169 10-72 (99)
182 PF07449 HyaE: Hydrogenase-1 e 98.0 6.2E-05 1.4E-09 53.0 8.2 86 86-178 15-105 (107)
183 cd02981 PDI_b_family Protein D 97.9 0.00017 3.7E-09 49.3 9.7 92 82-186 2-96 (97)
184 cd03027 GRX_DEP Glutaredoxin ( 97.9 0.0001 2.2E-09 48.0 7.4 59 105-170 3-63 (73)
185 cd03418 GRX_GRXb_1_3_like Glut 97.9 0.0001 2.3E-09 47.9 7.5 58 105-169 2-62 (75)
186 cd02983 P5_C P5 family, C-term 97.8 0.00063 1.4E-08 49.7 11.7 104 79-189 2-116 (130)
187 TIGR02181 GRX_bact Glutaredoxi 97.8 7.7E-05 1.7E-09 49.3 6.1 58 105-169 1-60 (79)
188 KOG3170 Conserved phosducin-li 97.8 0.00016 3.4E-09 56.0 8.3 104 77-187 89-200 (240)
189 PF05768 DUF836: Glutaredoxin- 97.8 0.00035 7.6E-09 46.6 9.1 75 105-185 2-81 (81)
190 COG0695 GrxC Glutaredoxin and 97.7 0.0003 6.4E-09 47.0 8.1 68 105-182 3-75 (80)
191 PTZ00062 glutaredoxin; Provisi 97.7 6.4E-05 1.4E-09 59.1 5.4 115 38-169 58-179 (204)
192 TIGR00365 monothiol glutaredox 97.7 0.00055 1.2E-08 47.4 9.4 52 111-169 25-78 (97)
193 cd02972 DsbA_family DsbA famil 97.7 0.00024 5.3E-09 47.6 6.9 60 105-164 1-91 (98)
194 TIGR03143 AhpF_homolog putativ 97.6 0.00058 1.3E-08 61.4 11.0 98 87-189 354-455 (555)
195 cd03067 PDI_b_PDIR_N PDIb fami 97.6 0.00053 1.1E-08 47.5 8.1 98 83-185 5-109 (112)
196 PRK10638 glutaredoxin 3; Provi 97.6 0.00029 6.4E-09 47.1 6.9 58 105-169 4-63 (83)
197 KOG2603 Oligosaccharyltransfer 97.6 0.00058 1.3E-08 56.3 9.2 108 77-188 38-166 (331)
198 cd03072 PDI_b'_ERp44 PDIb' fam 97.5 0.00096 2.1E-08 47.3 8.9 96 86-189 5-109 (111)
199 cd03028 GRX_PICOT_like Glutare 97.2 0.0016 3.4E-08 44.3 6.6 52 111-169 21-74 (90)
200 PF00837 T4_deiodinase: Iodoth 97.2 0.001 2.2E-08 53.2 6.1 109 75-187 78-236 (237)
201 PRK10824 glutaredoxin-4; Provi 97.1 0.0022 4.7E-08 45.9 6.7 53 111-170 28-82 (115)
202 cd03073 PDI_b'_ERp72_ERp57 PDI 97.1 0.0045 9.7E-08 43.9 7.8 72 114-187 31-110 (111)
203 PRK12759 bifunctional gluaredo 96.9 0.0034 7.4E-08 54.5 7.0 58 105-169 4-71 (410)
204 cd02990 UAS_FAF1 UAS family, F 96.8 0.033 7.2E-07 40.9 11.0 100 88-189 4-134 (136)
205 KOG1752 Glutaredoxin and relat 96.7 0.0095 2.1E-07 41.8 7.2 59 105-169 16-78 (104)
206 PF07912 ERp29_N: ERp29, N-ter 96.7 0.054 1.2E-06 39.0 10.8 96 86-187 10-118 (126)
207 PF01323 DSBA: DSBA-like thior 96.6 0.028 6E-07 42.9 9.9 33 104-136 1-33 (193)
208 COG1331 Highly conserved prote 96.6 0.0044 9.5E-08 56.2 5.8 78 87-170 33-123 (667)
209 COG1651 DsbG Protein-disulfide 96.5 0.027 5.8E-07 45.0 9.5 37 147-188 206-243 (244)
210 cd03066 PDI_b_Calsequestrin_mi 96.5 0.088 1.9E-06 36.4 10.7 95 81-187 2-100 (102)
211 COG1225 Bcp Peroxiredoxin [Pos 96.4 0.044 9.5E-07 41.3 9.5 88 100-187 29-155 (157)
212 PF13743 Thioredoxin_5: Thiore 96.4 0.013 2.9E-07 44.8 6.9 32 107-138 2-34 (176)
213 cd03031 GRX_GRX_like Glutaredo 96.1 0.049 1.1E-06 40.6 8.3 59 105-170 2-72 (147)
214 PF13848 Thioredoxin_6: Thiore 96.1 0.045 9.8E-07 41.3 8.1 65 118-188 7-75 (184)
215 cd03069 PDI_b_ERp57 PDIb famil 95.5 0.32 6.8E-06 33.8 9.9 92 82-187 3-103 (104)
216 cd03041 GST_N_2GST_N GST_N fam 95.1 0.29 6.2E-06 31.8 8.2 73 105-187 2-76 (77)
217 cd02974 AhpF_NTD_N Alkyl hydro 95.0 0.75 1.6E-05 31.5 10.5 83 88-187 8-93 (94)
218 KOG2507 Ubiquitin regulatory p 94.8 0.3 6.6E-06 42.2 9.5 99 89-188 7-111 (506)
219 KOG4277 Uncharacterized conser 94.5 0.26 5.5E-06 41.0 8.1 134 36-187 94-230 (468)
220 cd03040 GST_N_mPGES2 GST_N fam 94.5 0.49 1.1E-05 30.4 8.2 73 105-188 2-76 (77)
221 PRK15317 alkyl hydroperoxide r 94.5 0.48 1.1E-05 42.3 10.6 86 88-189 8-95 (517)
222 COG0386 BtuE Glutathione perox 94.3 0.45 9.8E-06 35.6 8.3 90 100-190 24-162 (162)
223 cd03013 PRX5_like Peroxiredoxi 94.1 0.14 3E-06 38.3 5.5 41 102-142 31-75 (155)
224 KOG2640 Thioredoxin [Function 94.1 0.018 4E-07 47.6 0.7 87 100-188 75-162 (319)
225 cd03060 GST_N_Omega_like GST_N 93.6 0.39 8.5E-06 30.5 6.3 59 106-169 2-60 (71)
226 cd03037 GST_N_GRX2 GST_N famil 93.6 0.52 1.1E-05 29.8 6.8 56 107-168 3-58 (71)
227 TIGR03140 AhpF alkyl hydropero 93.2 1.2 2.7E-05 39.6 10.8 87 88-189 8-96 (515)
228 COG1999 Uncharacterized protei 92.9 2.5 5.5E-05 33.2 11.0 91 100-190 66-206 (207)
229 cd02978 KaiB_like KaiB-like fa 92.5 0.48 1E-05 30.9 5.2 57 105-163 4-62 (72)
230 COG4545 Glutaredoxin-related p 92.3 0.4 8.7E-06 31.5 4.6 59 106-170 5-77 (85)
231 PHA03075 glutaredoxin-like pro 91.9 0.24 5.2E-06 35.2 3.6 30 102-131 2-31 (123)
232 KOG1731 FAD-dependent sulfhydr 91.9 0.94 2E-05 40.7 8.0 166 12-190 86-271 (606)
233 cd00570 GST_N_family Glutathio 91.8 0.92 2E-05 27.5 6.1 58 107-169 3-60 (71)
234 COG2761 FrnE Predicted dithiol 91.4 0.47 1E-05 37.8 5.2 40 147-190 175-215 (225)
235 cd03035 ArsC_Yffb Arsenate Red 91.3 0.087 1.9E-06 36.9 0.8 44 105-153 1-49 (105)
236 cd03036 ArsC_like Arsenate Red 91.2 0.1 2.2E-06 36.8 1.1 33 106-143 2-34 (111)
237 TIGR02742 TrbC_Ftype type-F co 91.1 3.1 6.8E-05 30.3 8.9 72 87-167 11-82 (130)
238 PF13417 GST_N_3: Glutathione 91.1 2.8 6E-05 26.8 9.7 72 108-190 2-73 (75)
239 cd03059 GST_N_SspA GST_N famil 90.6 2.8 6.1E-05 26.3 7.5 70 106-186 2-71 (73)
240 COG3019 Predicted metal-bindin 90.3 3.2 6.9E-05 30.6 8.1 72 103-186 26-102 (149)
241 PF06491 Disulph_isomer: Disul 90.0 5.9 0.00013 28.9 13.0 107 78-189 15-133 (136)
242 cd02977 ArsC_family Arsenate R 89.9 0.15 3.3E-06 35.3 1.1 33 105-142 1-33 (105)
243 PRK09301 circadian clock prote 89.4 1.1 2.3E-05 31.3 4.9 77 101-180 5-85 (103)
244 PF09673 TrbC_Ftype: Type-F co 89.2 5.6 0.00012 28.1 8.7 68 87-165 10-80 (113)
245 PF06053 DUF929: Domain of unk 89.0 1.9 4.2E-05 34.9 6.9 58 99-164 56-113 (249)
246 TIGR02654 circ_KaiB circadian 88.7 1.3 2.8E-05 29.9 4.9 70 103-175 4-75 (87)
247 TIGR01617 arsC_related transcr 88.6 0.79 1.7E-05 32.5 4.1 33 106-143 2-34 (117)
248 cd03051 GST_N_GTT2_like GST_N 88.6 1.3 2.9E-05 27.7 4.8 59 106-168 2-62 (74)
249 PRK01655 spxA transcriptional 87.8 0.84 1.8E-05 33.2 3.8 34 105-143 2-35 (131)
250 cd03068 PDI_b_ERp72 PDIb famil 86.9 8.3 0.00018 26.8 11.0 94 81-186 2-106 (107)
251 KOG0912 Thiol-disulfide isomer 86.9 1 2.2E-05 37.6 4.1 129 37-187 67-207 (375)
252 cd03045 GST_N_Delta_Epsilon GS 85.2 3.3 7.2E-05 26.1 5.3 58 106-168 2-61 (74)
253 cd03024 DsbA_FrnE DsbA family, 85.1 1.7 3.6E-05 33.3 4.5 35 146-184 165-200 (201)
254 PF02630 SCO1-SenC: SCO1/SenC; 84.6 1.9 4.1E-05 32.8 4.5 44 100-143 51-99 (174)
255 PRK12559 transcriptional regul 84.5 0.71 1.5E-05 33.6 2.0 33 105-142 2-34 (131)
256 KOG2792 Putative cytochrome C 84.3 7.1 0.00015 31.9 7.7 90 100-189 138-276 (280)
257 COG3531 Predicted protein-disu 84.1 2.2 4.7E-05 33.4 4.5 44 146-189 164-210 (212)
258 COG0278 Glutaredoxin-related p 83.7 10 0.00022 26.4 7.2 65 99-170 13-83 (105)
259 cd03074 PDI_b'_Calsequestrin_C 83.4 13 0.00029 26.2 10.3 86 101-188 20-120 (120)
260 KOG2244 Highly conserved prote 83.1 3.7 7.9E-05 37.0 6.1 70 94-164 105-185 (786)
261 cd03032 ArsC_Spx Arsenate Redu 81.5 0.66 1.4E-05 32.8 0.8 34 105-143 2-35 (115)
262 cd03022 DsbA_HCCA_Iso DsbA fam 79.5 3 6.6E-05 31.5 4.0 34 146-184 157-191 (192)
263 KOG1651 Glutathione peroxidase 78.7 13 0.00028 28.3 6.9 43 100-142 33-77 (171)
264 COG3634 AhpF Alkyl hydroperoxi 78.5 7.5 0.00016 33.5 6.2 131 39-184 57-194 (520)
265 PF07689 KaiB: KaiB domain; I 78.3 0.63 1.4E-05 31.1 -0.2 52 108-161 3-56 (82)
266 PF06953 ArsD: Arsenical resis 78.3 18 0.0004 26.0 7.4 61 120-186 30-100 (123)
267 PRK13344 spxA transcriptional 77.5 1.1 2.3E-05 32.7 0.8 34 105-143 2-35 (132)
268 cd03056 GST_N_4 GST_N family, 75.2 11 0.00024 23.3 5.2 59 106-169 2-62 (73)
269 PF07315 DUF1462: Protein of u 75.0 23 0.00051 24.1 8.7 70 112-185 8-93 (93)
270 cd03033 ArsC_15kD Arsenate Red 74.0 1.7 3.8E-05 30.7 1.2 33 105-142 2-34 (113)
271 cd03055 GST_N_Omega GST_N fami 73.9 14 0.0003 24.5 5.6 59 105-168 19-77 (89)
272 PF02401 LYTB: LytB protein; 72.1 7 0.00015 32.3 4.5 100 86-189 166-279 (281)
273 cd03025 DsbA_FrnE_like DsbA fa 71.5 5.9 0.00013 30.0 3.7 27 105-131 3-29 (193)
274 PF04592 SelP_N: Selenoprotein 71.4 7.2 0.00016 31.3 4.2 45 99-143 24-73 (238)
275 KOG1422 Intracellular Cl- chan 71.3 36 0.00079 27.0 7.9 67 112-189 20-86 (221)
276 PRK00366 ispG 4-hydroxy-3-meth 69.6 20 0.00042 30.7 6.6 77 113-189 271-358 (360)
277 PRK13730 conjugal transfer pil 67.5 60 0.0013 25.6 8.5 29 146-175 152-180 (212)
278 PRK01045 ispH 4-hydroxy-3-meth 67.2 35 0.00076 28.5 7.6 99 86-188 167-279 (298)
279 cd03052 GST_N_GDAP1 GST_N fami 66.5 21 0.00046 22.6 5.1 59 106-169 2-62 (73)
280 cd03025 DsbA_FrnE_like DsbA fa 65.7 10 0.00022 28.6 4.0 22 146-167 159-180 (193)
281 PF13778 DUF4174: Domain of un 65.2 46 0.001 23.5 8.4 83 105-187 12-111 (118)
282 TIGR00014 arsC arsenate reduct 64.3 3.6 7.8E-05 29.0 1.1 44 106-154 2-50 (114)
283 TIGR00216 ispH_lytB (E)-4-hydr 63.9 44 0.00096 27.6 7.5 100 86-189 165-278 (280)
284 COG3411 Ferredoxin [Energy pro 63.9 21 0.00046 22.6 4.4 32 156-190 16-47 (64)
285 PF11287 DUF3088: Protein of u 62.0 13 0.00029 26.3 3.6 76 112-188 23-107 (112)
286 PF09822 ABC_transp_aux: ABC-t 61.2 86 0.0019 25.3 11.8 65 89-156 15-88 (271)
287 PF06764 DUF1223: Protein of u 60.7 80 0.0017 24.8 9.3 80 105-189 2-99 (202)
288 COG1393 ArsC Arsenate reductas 59.8 6.9 0.00015 27.9 1.9 23 105-127 3-25 (117)
289 PF04134 DUF393: Protein of un 58.8 13 0.00028 25.7 3.2 57 108-167 2-61 (114)
290 cd03034 ArsC_ArsC Arsenate Red 58.3 4.9 0.00011 28.2 0.9 43 106-153 2-49 (112)
291 PF08806 Sep15_SelM: Sep15/Sel 58.0 16 0.00035 24.1 3.3 33 156-188 41-76 (78)
292 PRK12360 4-hydroxy-3-methylbut 57.9 87 0.0019 25.9 8.3 99 85-189 167-279 (281)
293 cd03061 GST_N_CLIC GST_N famil 55.9 61 0.0013 21.9 7.2 65 111-188 20-86 (91)
294 COG5429 Uncharacterized secret 55.8 44 0.00094 27.0 5.9 84 102-188 42-141 (261)
295 TIGR03439 methyl_EasF probable 54.4 76 0.0017 26.7 7.5 57 103-162 78-134 (319)
296 cd07973 Spt4 Transcription elo 54.1 22 0.00047 24.6 3.5 69 108-186 18-93 (98)
297 COG0821 gcpE 1-hydroxy-2-methy 53.3 37 0.00081 28.8 5.4 77 113-189 264-352 (361)
298 PF00255 GSHPx: Glutathione pe 53.0 33 0.00072 24.0 4.4 81 100-185 20-108 (108)
299 cd03021 DsbA_GSTK DsbA family, 52.2 21 0.00045 27.7 3.7 38 147-184 170-208 (209)
300 COG0450 AhpC Peroxiredoxin [Po 52.0 1.1E+02 0.0025 23.8 9.0 88 101-188 33-161 (194)
301 PF04551 GcpE: GcpE protein; 51.6 17 0.00037 31.0 3.2 74 113-187 271-358 (359)
302 PRK09481 sspA stringent starva 50.5 1.1E+02 0.0024 23.4 8.4 64 100-169 6-69 (211)
303 PRK10853 putative reductase; P 48.7 9.3 0.0002 27.2 1.1 33 105-142 2-34 (118)
304 TIGR02182 GRXB Glutaredoxin, G 48.1 1.3E+02 0.0027 23.2 8.1 55 108-168 3-57 (209)
305 PRK10387 glutaredoxin 2; Provi 47.0 1.2E+02 0.0027 22.9 8.1 70 107-187 3-72 (210)
306 PRK10026 arsenate reductase; P 45.6 15 0.00032 27.2 1.8 44 105-153 4-52 (141)
307 cd03007 PDI_a_ERp29_N PDIa fam 44.6 16 0.00035 26.0 1.7 21 37-57 73-96 (116)
308 COG4837 Uncharacterized protei 44.4 1E+02 0.0022 21.2 7.2 79 105-187 7-102 (106)
309 KOG0075 GTP-binding ADP-ribosy 42.2 1.5E+02 0.0033 22.4 7.0 45 118-163 77-129 (186)
310 cd03053 GST_N_Phi GST_N family 41.9 84 0.0018 19.4 7.0 59 105-168 2-62 (76)
311 KOG1364 Predicted ubiquitin re 41.2 41 0.00088 28.7 3.9 57 133-189 131-190 (356)
312 PF00352 TBP: Transcription fa 40.8 48 0.001 21.9 3.6 30 157-188 49-79 (86)
313 PF02702 KdpD: Osmosensitive K 40.4 1.9E+02 0.004 23.0 7.5 71 100-172 3-74 (211)
314 TIGR01616 nitro_assoc nitrogen 38.8 17 0.00036 26.2 1.1 33 105-142 3-35 (126)
315 PRK00087 4-hydroxy-3-methylbut 37.5 1.8E+02 0.0039 27.0 7.8 98 85-188 164-275 (647)
316 TIGR03759 conj_TIGR03759 integ 37.4 72 0.0016 25.0 4.5 51 101-154 108-160 (200)
317 PF07511 DUF1525: Protein of u 37.3 97 0.0021 22.0 4.8 35 149-187 76-111 (114)
318 COG5494 Predicted thioredoxin/ 32.4 2.5E+02 0.0053 22.5 6.7 73 105-186 13-86 (265)
319 COG3011 Predicted thiol-disulf 32.3 2.1E+02 0.0045 21.1 6.6 67 100-169 5-73 (137)
320 PF05679 CHGN: Chondroitin N-a 32.2 2.4E+02 0.0051 25.3 7.5 63 101-163 281-347 (499)
321 PF00708 Acylphosphatase: Acyl 31.5 1.2E+02 0.0026 20.1 4.4 40 146-188 24-63 (91)
322 PF10865 DUF2703: Domain of un 31.4 92 0.002 22.3 3.9 57 111-174 13-77 (120)
323 cd03049 GST_N_3 GST_N family, 31.0 1.3E+02 0.0028 18.4 4.8 60 107-169 3-62 (73)
324 cd03050 GST_N_Theta GST_N fami 30.6 1.4E+02 0.003 18.5 5.3 57 107-168 3-61 (76)
325 PF01216 Calsequestrin: Calseq 30.0 3.6E+02 0.0079 23.3 10.2 88 100-189 267-369 (383)
326 COG1582 FlgEa Uncharacterized 29.6 1.4E+02 0.0031 18.9 4.0 34 153-188 21-55 (67)
327 PF03960 ArsC: ArsC family; I 29.1 74 0.0016 21.9 3.1 41 108-153 1-46 (110)
328 cd03054 GST_N_Metaxin GST_N fa 28.6 1.5E+02 0.0032 18.2 6.8 57 111-185 14-70 (72)
329 COG0761 lytB 4-Hydroxy-3-methy 28.4 3.5E+02 0.0077 22.6 7.4 101 84-188 167-281 (294)
330 cd03375 TPP_OGFOR Thiamine pyr 27.9 1E+02 0.0022 23.6 4.0 29 83-111 156-184 (193)
331 TIGR00612 ispG_gcpE 1-hydroxy- 27.5 1.2E+02 0.0027 25.8 4.6 66 109-174 261-334 (346)
332 cd03376 TPP_PFOR_porB_like Thi 27.4 3E+02 0.0064 21.9 6.7 30 82-111 171-200 (235)
333 TIGR03757 conj_TIGR03757 integ 25.7 1.8E+02 0.0039 20.6 4.5 32 149-184 77-109 (113)
334 cd06353 PBP1_BmpA_Med_like Per 25.6 2.3E+02 0.0049 22.7 5.8 49 86-141 42-90 (258)
335 cd03062 TRX_Fd_Sucrase TRX-lik 24.8 1.9E+02 0.0041 19.5 4.5 33 155-190 51-85 (97)
336 COG2077 Tpx Peroxiredoxin [Pos 24.3 2.3E+02 0.0049 21.4 5.0 56 100-155 44-100 (158)
337 KOG3782 Predicted membrane pro 23.9 2E+02 0.0044 21.9 4.7 20 112-131 26-46 (189)
338 PF04908 SH3BGR: SH3-binding, 23.9 62 0.0014 22.3 1.9 38 106-143 3-42 (99)
339 cd03038 GST_N_etherase_LigE GS 23.8 2E+02 0.0044 18.2 4.4 68 110-187 13-82 (84)
340 COG2101 SPT15 TATA-box binding 23.7 1.7E+02 0.0036 22.6 4.3 29 159-189 55-84 (185)
341 cd02015 TPP_AHAS Thiamine pyro 23.7 1.6E+02 0.0034 22.2 4.3 33 79-111 142-174 (186)
342 cd04518 TBP_archaea archaeal T 23.7 1.6E+02 0.0036 22.4 4.4 28 159-188 140-168 (174)
343 PF06279 DUF1033: Protein of u 23.7 41 0.0009 24.1 1.0 51 75-125 18-85 (120)
344 PRK13669 hypothetical protein; 23.5 2.3E+02 0.0049 18.7 6.2 55 123-190 20-74 (78)
345 PF02775 TPP_enzyme_C: Thiamin 23.4 1.4E+02 0.0029 21.6 3.8 30 79-108 122-153 (153)
346 PF14424 Toxin-deaminase: The 23.3 3E+02 0.0064 20.0 5.6 31 106-139 99-131 (133)
347 cd00568 TPP_enzymes Thiamine p 23.2 1.6E+02 0.0035 21.3 4.2 31 79-109 137-167 (168)
348 cd02004 TPP_BZL_OCoD_HPCL Thia 23.1 1.7E+02 0.0036 21.7 4.3 31 79-109 140-170 (172)
349 PF07293 DUF1450: Protein of u 22.8 2.3E+02 0.0051 18.6 6.1 58 120-190 17-74 (78)
350 cd01840 SGNH_hydrolase_yrhL_li 22.8 2.3E+02 0.005 20.3 5.0 11 87-97 66-76 (150)
351 PRK06163 hypothetical protein; 22.7 1.7E+02 0.0036 22.8 4.3 36 81-116 143-178 (202)
352 cd03058 GST_N_Tau GST_N family 22.2 2E+02 0.0044 17.6 7.8 69 107-186 3-72 (74)
353 cd02010 TPP_ALS Thiamine pyrop 21.8 1.5E+02 0.0032 22.3 3.8 32 79-110 138-169 (177)
354 cd00652 TBP_TLF TATA box bindi 21.7 1.9E+02 0.0041 22.0 4.3 29 158-188 48-77 (174)
355 PRK13371 4-hydroxy-3-methylbut 21.6 5.4E+02 0.012 22.4 8.1 100 86-188 236-375 (387)
356 cd02009 TPP_SHCHC_synthase Thi 21.5 1.8E+02 0.0039 21.7 4.3 31 79-109 143-173 (175)
357 PRK00394 transcription factor; 21.3 2E+02 0.0042 22.1 4.4 29 158-188 140-169 (179)
358 COG1744 Med Uncharacterized AB 21.1 2.3E+02 0.005 24.0 5.2 48 86-140 82-129 (345)
359 PF05673 DUF815: Protein of un 21.0 4.6E+02 0.01 21.3 6.9 60 104-165 54-114 (249)
360 cd03039 GST_N_Sigma_like GST_N 20.9 2.1E+02 0.0046 17.4 4.2 57 108-169 4-60 (72)
361 PF09654 DUF2396: Protein of u 20.7 35 0.00076 25.2 0.1 13 112-124 8-20 (161)
362 PRK00394 transcription factor; 20.7 2E+02 0.0043 22.0 4.3 29 158-188 47-76 (179)
363 COG4752 Uncharacterized protei 20.7 1.1E+02 0.0024 23.0 2.7 22 95-116 127-148 (190)
364 PF14421 LmjF365940-deam: A di 20.6 99 0.0022 23.9 2.5 28 112-142 156-183 (193)
365 TIGR02652 conserved hypothetic 20.6 36 0.00079 25.1 0.2 13 112-124 11-23 (163)
366 cd04517 TLF TBP-like factors ( 20.4 2.2E+02 0.0047 21.7 4.5 29 158-188 48-77 (174)
367 cd04516 TBP_eukaryotes eukaryo 20.3 2.1E+02 0.0046 21.8 4.4 28 159-188 49-77 (174)
368 TIGR01764 excise DNA binding d 20.1 21 0.00045 20.1 -1.0 11 176-186 39-49 (49)
No 1
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.1e-26 Score=170.70 Aligned_cols=106 Identities=34% Similarity=0.702 Sum_probs=99.6
Q ss_pred CCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC-cEEEEEECCCcchHHHHHhcCCCcc
Q 029545 79 SNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAV 157 (191)
Q Consensus 79 ~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~-v~~~~vd~d~~~~~~l~~~~~I~~~ 157 (191)
.....+.+.++|++.+. +++.||+|+|||+||+||+.+.|.+++++.+|.| +++++||+|++ .+++.+|+|.++
T Consensus 42 ~~~~~~~s~~~~~~~Vi---~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~--~ela~~Y~I~av 116 (150)
T KOG0910|consen 42 ATLFNVQSDSEFDDKVI---NSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEH--PELAEDYEISAV 116 (150)
T ss_pred cccccccCHHHHHHHHH---ccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccc--cchHhhcceeee
Confidence 56777888999998864 6899999999999999999999999999999988 99999999998 999999999999
Q ss_pred cEEEEEeCCeEEEEEeCC-CHHHHHHHHHHHhc
Q 029545 158 PTFLFFQHGEKVAEIVGA-DVSRLKTTMEQLYK 189 (191)
Q Consensus 158 Pt~~~~~~G~~~~~~~G~-~~~~l~~~i~~~~~ 189 (191)
||+++|+||++++++.|. +.+.|.++|+++++
T Consensus 117 PtvlvfknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 117 PTVLVFKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred eEEEEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 999999999999999999 99999999999875
No 2
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=8.4e-25 Score=154.41 Aligned_cols=102 Identities=34% Similarity=0.685 Sum_probs=91.4
Q ss_pred ecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEE
Q 029545 84 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFF 163 (191)
Q Consensus 84 i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~ 163 (191)
+.+.++++.....+..++++++|+|||+|||+|+.+.|.+++++.+|+++.|++||+|+ +.++++.++|.++||++||
T Consensus 4 v~~~~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde--~~~~~~~~~V~~~PTf~f~ 81 (106)
T KOG0907|consen 4 VETVSDLDLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE--LEEVAKEFNVKAMPTFVFY 81 (106)
T ss_pred EEehhhHHHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc--CHhHHHhcCceEeeEEEEE
Confidence 34445566666556667799999999999999999999999999999999999999999 5999999999999999999
Q ss_pred eCCeEEEEEeCCCHHHHHHHHHHH
Q 029545 164 QHGEKVAEIVGADVSRLKTTMEQL 187 (191)
Q Consensus 164 ~~G~~~~~~~G~~~~~l~~~i~~~ 187 (191)
++|+.+.++.|.+.+++++.++++
T Consensus 82 k~g~~~~~~vGa~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 82 KGGEEVDEVVGANKAELEKKIAKH 105 (106)
T ss_pred ECCEEEEEEecCCHHHHHHHHHhc
Confidence 999999999999999998888764
No 3
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.91 E-value=1.7e-23 Score=147.37 Aligned_cols=99 Identities=26% Similarity=0.366 Sum_probs=89.2
Q ss_pred CHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcc-hHHHHHhcCCCcccEEEEEe
Q 029545 86 SGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG-LESTLSKLNISAVPTFLFFQ 164 (191)
Q Consensus 86 s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~-~~~l~~~~~I~~~Pt~~~~~ 164 (191)
+.++|++.+.+ ..++++||+|||+||++|+.+.|.+++++++++++.|+.||+|++. ..+++++|+|.++||+++|+
T Consensus 2 ~~~~~~~~i~~--~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~ 79 (103)
T cd02985 2 SVEELDEALKK--AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYK 79 (103)
T ss_pred CHHHHHHHHHH--cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEe
Confidence 57899999865 3588999999999999999999999999999977999999999862 34899999999999999999
Q ss_pred CCeEEEEEeCCCHHHHHHHHHH
Q 029545 165 HGEKVAEIVGADVSRLKTTMEQ 186 (191)
Q Consensus 165 ~G~~~~~~~G~~~~~l~~~i~~ 186 (191)
+|+.+.++.|.++++|.+.+.+
T Consensus 80 ~G~~v~~~~G~~~~~l~~~~~~ 101 (103)
T cd02985 80 DGEKIHEEEGIGPDELIGDVLY 101 (103)
T ss_pred CCeEEEEEeCCCHHHHHHHHHh
Confidence 9999999999999998887765
No 4
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.91 E-value=2.4e-23 Score=148.33 Aligned_cols=99 Identities=17% Similarity=0.356 Sum_probs=86.4
Q ss_pred HHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC-cEEEEEECCCcchHHHHHhcCCCcccEEEEEeC
Q 029545 87 GEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVPTFLFFQH 165 (191)
Q Consensus 87 ~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~-v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~ 165 (191)
.++|++.+.. ++++++||+|||+||++|+.|.|.+++++.++++ +.|++||+|+. ++++++|+|.++||+++|++
T Consensus 2 ~~~~~~~i~~--~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~--~~la~~~~V~~iPTf~~fk~ 77 (114)
T cd02954 2 GWAVDQAILS--EEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEV--PDFNKMYELYDPPTVMFFFR 77 (114)
T ss_pred HHHHHHHHhc--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCC--HHHHHHcCCCCCCEEEEEEC
Confidence 5788888753 4678999999999999999999999999999998 79999999997 89999999999999999999
Q ss_pred CeEEEEEeCC-----------CHHHHHHHHHHHhc
Q 029545 166 GEKVAEIVGA-----------DVSRLKTTMEQLYK 189 (191)
Q Consensus 166 G~~~~~~~G~-----------~~~~l~~~i~~~~~ 189 (191)
|+.+.+..|. +.+++++.++.+..
T Consensus 78 G~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (114)
T cd02954 78 NKHMKIDLGTGNNNKINWVFEDKQEFIDIIETIYR 112 (114)
T ss_pred CEEEEEEcCCCCCceEEEecCcHHHHHHHHHHHhc
Confidence 9999988774 45667777766544
No 5
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.90 E-value=6.1e-23 Score=143.04 Aligned_cols=100 Identities=28% Similarity=0.617 Sum_probs=92.7
Q ss_pred EecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCC-CcEEEEEECCCcchHHHHHhcCCCcccEEE
Q 029545 83 VIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQKGLESTLSKLNISAVPTFL 161 (191)
Q Consensus 83 ~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~-~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~ 161 (191)
...+.++|++.+.+ ++++++|+||++||++|+.+.|.|++++++++ ++.++.||++++ ++++++|+|.++||++
T Consensus 2 ~~lt~~~f~~~i~~---~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~ 76 (103)
T PF00085_consen 2 IVLTDENFEKFINE---SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN--KELCKKYGVKSVPTII 76 (103)
T ss_dssp EEESTTTHHHHHTT---TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS--HHHHHHTTCSSSSEEE
T ss_pred EECCHHHHHHHHHc---cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhcc--chhhhccCCCCCCEEE
Confidence 34577999999753 57899999999999999999999999999998 699999999987 8999999999999999
Q ss_pred EEeCCeEEEEEeCC-CHHHHHHHHHHH
Q 029545 162 FFQHGEKVAEIVGA-DVSRLKTTMEQL 187 (191)
Q Consensus 162 ~~~~G~~~~~~~G~-~~~~l~~~i~~~ 187 (191)
+|++|+...++.|. +.+.|.+||+++
T Consensus 77 ~~~~g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 77 FFKNGKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EEETTEEEEEEESSSSHHHHHHHHHHH
T ss_pred EEECCcEEEEEECCCCHHHHHHHHHcC
Confidence 99999999999999 999999999975
No 6
>PHA02278 thioredoxin-like protein
Probab=99.90 E-value=4.3e-23 Score=145.28 Aligned_cols=95 Identities=17% Similarity=0.316 Sum_probs=83.1
Q ss_pred cCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC-cEEEEEECCCcc--hHHHHHhcCCCcccEEE
Q 029545 85 ESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKG--LESTLSKLNISAVPTFL 161 (191)
Q Consensus 85 ~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~-v~~~~vd~d~~~--~~~l~~~~~I~~~Pt~~ 161 (191)
.+.++|++.+. ++++++|+|||+||++|+.+.|.++++++++.. +.+++||+|.++ ..+++++|+|.++||++
T Consensus 2 ~~~~~~~~~i~----~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i 77 (103)
T PHA02278 2 NSLVDLNTAIR----QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLI 77 (103)
T ss_pred CCHHHHHHHHh----CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEE
Confidence 45688888873 578999999999999999999999999987544 789999999863 36899999999999999
Q ss_pred EEeCCeEEEEEeCC-CHHHHHHH
Q 029545 162 FFQHGEKVAEIVGA-DVSRLKTT 183 (191)
Q Consensus 162 ~~~~G~~~~~~~G~-~~~~l~~~ 183 (191)
+|++|+.+.++.|. +.+.|.++
T Consensus 78 ~fk~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 78 GYKDGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred EEECCEEEEEEeCCCCHHHHHhh
Confidence 99999999999997 88877765
No 7
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.90 E-value=3.3e-23 Score=148.19 Aligned_cols=102 Identities=11% Similarity=0.148 Sum_probs=88.6
Q ss_pred CCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC-cEEEEEECCCcchHHHH-HhcCCCc
Q 029545 79 SNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTL-SKLNISA 156 (191)
Q Consensus 79 ~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~-v~~~~vd~d~~~~~~l~-~~~~I~~ 156 (191)
++++++ +.++|++++. +.+++++++|.|||+||++|+.+.|.++++++++++ +.|++||++.+ .++| ++|+|.+
T Consensus 9 ~~v~~l-~~~~f~~~~~-v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~--~~l~~~~~~I~~ 84 (113)
T cd03006 9 SPVLDF-YKGQLDYAEE-LRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWP--QGKCRKQKHFFY 84 (113)
T ss_pred CCeEEe-chhhhHHHHh-cccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCC--hHHHHHhcCCcc
Confidence 445555 6689988743 336788999999999999999999999999999987 89999999987 7888 5899999
Q ss_pred ccEEEEEeCCeEEEEEeCC-CHHHHHHHH
Q 029545 157 VPTFLFFQHGEKVAEIVGA-DVSRLKTTM 184 (191)
Q Consensus 157 ~Pt~~~~~~G~~~~~~~G~-~~~~l~~~i 184 (191)
+||+++|++|+...++.|. +.+.|..|+
T Consensus 85 ~PTl~lf~~g~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 85 FPVIHLYYRSRGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred cCEEEEEECCccceEEeCCCCHHHHHhhC
Confidence 9999999999988889998 888888763
No 8
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.90 E-value=6.9e-23 Score=143.98 Aligned_cols=98 Identities=29% Similarity=0.505 Sum_probs=89.1
Q ss_pred EecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC--cEEEEEECCCcchHHHHHhcCCCcccEE
Q 029545 83 VIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH--VTTYKIDIDQKGLESTLSKLNISAVPTF 160 (191)
Q Consensus 83 ~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~--v~~~~vd~d~~~~~~l~~~~~I~~~Pt~ 160 (191)
.+.|.++|++++. ++++++|+|||+||++|+.+.|.++++++++++ +.|+.+|+| + .+++++|+|+++||+
T Consensus 3 ~i~~~~~~~~~i~----~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~--~~~~~~~~v~~~Pt~ 75 (102)
T cd02948 3 EINNQEEWEELLS----NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-T--IDTLKRYRGKCEPTF 75 (102)
T ss_pred EccCHHHHHHHHc----cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-C--HHHHHHcCCCcCcEE
Confidence 5678999999874 578999999999999999999999999999874 789999999 4 688999999999999
Q ss_pred EEEeCCeEEEEEeCCCHHHHHHHHHHH
Q 029545 161 LFFQHGEKVAEIVGADVSRLKTTMEQL 187 (191)
Q Consensus 161 ~~~~~G~~~~~~~G~~~~~l~~~i~~~ 187 (191)
++|++|+.+.+..|.+++.+.++|+++
T Consensus 76 ~~~~~g~~~~~~~G~~~~~~~~~i~~~ 102 (102)
T cd02948 76 LFYKNGELVAVIRGANAPLLNKTITEL 102 (102)
T ss_pred EEEECCEEEEEEecCChHHHHHHHhhC
Confidence 999999999999999999999998763
No 9
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.89 E-value=2.9e-22 Score=144.50 Aligned_cols=105 Identities=14% Similarity=0.222 Sum_probs=92.4
Q ss_pred CCCCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChh--hc--chhHHHHHHHhhC--CC-cEEEEEECCCcchHHHH
Q 029545 77 GPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGP--CK--FIWPVIGELSAKH--PH-VTTYKIDIDQKGLESTL 149 (191)
Q Consensus 77 ~~~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~--C~--~~~p~~~~la~~~--~~-v~~~~vd~d~~~~~~l~ 149 (191)
+...++.+ +.++|++.+. +++.++|+.||++||++ |+ .+.|.+.+++.++ .+ +.|++||+|++ ++++
T Consensus 7 ~~~~v~~l-t~~nF~~~v~---~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~--~~La 80 (120)
T cd03065 7 GKDRVIDL-NEKNYKQVLK---KYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKD--AKVA 80 (120)
T ss_pred CCcceeeC-ChhhHHHHHH---hCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCC--HHHH
Confidence 44455555 6799999875 57789999999999987 99 8899999999987 54 99999999998 9999
Q ss_pred HhcCCCcccEEEEEeCCeEEEEEeCC-CHHHHHHHHHHHh
Q 029545 150 SKLNISAVPTFLFFQHGEKVAEIVGA-DVSRLKTTMEQLY 188 (191)
Q Consensus 150 ~~~~I~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~i~~~~ 188 (191)
++|+|.++||+++|++|+.+. +.|. +.+.|.+||++++
T Consensus 81 ~~~~I~~iPTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 81 KKLGLDEEDSIYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred HHcCCccccEEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 999999999999999999887 8998 9999999999876
No 10
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.89 E-value=1.6e-22 Score=141.50 Aligned_cols=96 Identities=13% Similarity=0.263 Sum_probs=85.7
Q ss_pred eEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC-cEEEEEECCCcchHHHHHhcCCCcccE
Q 029545 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVPT 159 (191)
Q Consensus 81 ~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~-v~~~~vd~d~~~~~~l~~~~~I~~~Pt 159 (191)
++.+ +.++|++.+. ++++++|.||++||++|+.+.|.++++++++++ +.|++||++++ ++++++++|+++||
T Consensus 3 ~~~l-~~~~f~~~v~----~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt 75 (101)
T cd03003 3 IVTL-DRGDFDAAVN----SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDD--RMLCRSQGVNSYPS 75 (101)
T ss_pred eEEc-CHhhHHHHhc----CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCcc--HHHHHHcCCCccCE
Confidence 3444 6789998864 458999999999999999999999999999986 89999999987 89999999999999
Q ss_pred EEEEeCCeEEEEEeCC-CHHHHHHH
Q 029545 160 FLFFQHGEKVAEIVGA-DVSRLKTT 183 (191)
Q Consensus 160 ~~~~~~G~~~~~~~G~-~~~~l~~~ 183 (191)
+++|++|+.+.++.|. +.+.|.+|
T Consensus 76 ~~~~~~g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 76 LYVFPSGMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred EEEEcCCCCcccCCCCCCHHHHHhh
Confidence 9999999998899998 88888765
No 11
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.89 E-value=2.4e-22 Score=139.12 Aligned_cols=93 Identities=22% Similarity=0.417 Sum_probs=84.0
Q ss_pred HHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC-cEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCe
Q 029545 89 EFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGE 167 (191)
Q Consensus 89 ~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~-v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~ 167 (191)
+|++.+.+ +.+++++|+||++||++|+.+.|.++++++.+++ +.++.||++.+ .+++++|+|.++||+++|++|+
T Consensus 2 ~f~~~i~~--~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~--~~l~~~~~i~~~Pt~~~~~~g~ 77 (96)
T cd02956 2 NFQQVLQE--STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQ--PQIAQQFGVQALPTVYLFAAGQ 77 (96)
T ss_pred ChHHHHHh--cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCC--HHHHHHcCCCCCCEEEEEeCCE
Confidence 56776643 4478999999999999999999999999999976 88999999997 8999999999999999999999
Q ss_pred EEEEEeCC-CHHHHHHHHH
Q 029545 168 KVAEIVGA-DVSRLKTTME 185 (191)
Q Consensus 168 ~~~~~~G~-~~~~l~~~i~ 185 (191)
.+.++.|. +.++|.++|+
T Consensus 78 ~~~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 78 PVDGFQGAQPEEQLRQMLD 96 (96)
T ss_pred EeeeecCCCCHHHHHHHhC
Confidence 99999998 8999998874
No 12
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.89 E-value=2e-22 Score=141.63 Aligned_cols=95 Identities=23% Similarity=0.384 Sum_probs=85.5
Q ss_pred cCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC-cEEEEEECCCcchHHHHHhcCCCcccEEEEE
Q 029545 85 ESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVPTFLFF 163 (191)
Q Consensus 85 ~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~-v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~ 163 (191)
.+.++|++.+. +++++++|.|||+||++|+.+.|.++++++++.+ +.+++||++++ ++++++|+|.++||+++|
T Consensus 6 l~~~~f~~~i~---~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~i~~~Pt~~~~ 80 (104)
T cd03004 6 LTPEDFPELVL---NRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKY--ESLCQQANIRAYPTIRLY 80 (104)
T ss_pred cCHHHHHHHHh---cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCch--HHHHHHcCCCcccEEEEE
Confidence 36789999865 4677999999999999999999999999999876 99999999997 899999999999999999
Q ss_pred eCC-eEEEEEeCC-C-HHHHHHHH
Q 029545 164 QHG-EKVAEIVGA-D-VSRLKTTM 184 (191)
Q Consensus 164 ~~G-~~~~~~~G~-~-~~~l~~~i 184 (191)
++| +.+.++.|. + .++|.+||
T Consensus 81 ~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 81 PGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred cCCCCCceEccCCCCCHHHHHhhC
Confidence 988 888999997 6 88888774
No 13
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.89 E-value=4.1e-22 Score=147.11 Aligned_cols=104 Identities=15% Similarity=0.277 Sum_probs=92.6
Q ss_pred EEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC-cEEEEEECCCcchHHHHHhcCCCcccEE
Q 029545 82 LVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVPTF 160 (191)
Q Consensus 82 ~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~-v~~~~vd~d~~~~~~l~~~~~I~~~Pt~ 160 (191)
..+.+.++|++.+.. ++++++||.|||+||++|+.+.|.++++++++++ +.|++||+|+. ++++++|+|++.||+
T Consensus 6 ~~l~s~~e~d~~I~~--~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~--~dla~~y~I~~~~t~ 81 (142)
T PLN00410 6 PHLHSGWAVDQAILA--EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEV--PDFNTMYELYDPCTV 81 (142)
T ss_pred hhhCCHHHHHHHHHh--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCC--HHHHHHcCccCCCcE
Confidence 456789999999864 4678999999999999999999999999999998 88899999997 899999999988766
Q ss_pred E-EEeCCe-EEEEEeC--------C-CHHHHHHHHHHHhc
Q 029545 161 L-FFQHGE-KVAEIVG--------A-DVSRLKTTMEQLYK 189 (191)
Q Consensus 161 ~-~~~~G~-~~~~~~G--------~-~~~~l~~~i~~~~~ 189 (191)
+ ||++|+ .+.+..| . +.++|++.++.+++
T Consensus 82 ~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~ 121 (142)
T PLN00410 82 MFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
T ss_pred EEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHH
Confidence 6 889999 8889888 4 88999999988764
No 14
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.6e-22 Score=158.85 Aligned_cols=107 Identities=34% Similarity=0.668 Sum_probs=100.9
Q ss_pred CeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccE
Q 029545 80 NILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPT 159 (191)
Q Consensus 80 ~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt 159 (191)
+++.+.++.+|+..+.. ...+.++|+|+|+||++|+.+.|.|+.++.+|++..|++||+|+. ...+..+||.+.||
T Consensus 2 ~Vi~v~~d~df~~~ls~--ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c--~~taa~~gV~amPT 77 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSA--AGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDEC--RGTAATNGVNAMPT 77 (288)
T ss_pred CeEEecCcHHHHHhhhc--cCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHh--hchhhhcCcccCce
Confidence 57899999999999875 567899999999999999999999999999999999999999998 89999999999999
Q ss_pred EEEEeCCeEEEEEeCCCHHHHHHHHHHHhcC
Q 029545 160 FLFFQHGEKVAEIVGADVSRLKTTMEQLYKK 190 (191)
Q Consensus 160 ~~~~~~G~~~~~~~G~~~~~l~~~i~~~~~~ 190 (191)
+++|.||+++..+.|+|+..|++.+.++...
T Consensus 78 Fiff~ng~kid~~qGAd~~gLe~kv~~~~st 108 (288)
T KOG0908|consen 78 FIFFRNGVKIDQIQGADASGLEEKVAKYAST 108 (288)
T ss_pred EEEEecCeEeeeecCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999999999998754
No 15
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.88 E-value=5.9e-22 Score=141.33 Aligned_cols=99 Identities=17% Similarity=0.256 Sum_probs=87.1
Q ss_pred CHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCC--CcEEEEEECCCcchHHHHHhcCCCcccEEEEE
Q 029545 86 SGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQKGLESTLSKLNISAVPTFLFF 163 (191)
Q Consensus 86 s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~--~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~ 163 (191)
+.++|++.+.. .+.+++++|+|||+||++|+.+.|.+++++++++ ++.+++||++.+ +.++++++|.++||+++|
T Consensus 10 ~~~~~~~~~~~-~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~--~~l~~~~~V~~~Pt~~i~ 86 (111)
T cd02963 10 TFSQYENEIVP-KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE--RRLARKLGAHSVPAIVGI 86 (111)
T ss_pred eHHHHHHhhcc-ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc--HHHHHHcCCccCCEEEEE
Confidence 66778765431 2467899999999999999999999999999986 489999999987 899999999999999999
Q ss_pred eCCeEEEEEeCC-CHHHHHHHHHHH
Q 029545 164 QHGEKVAEIVGA-DVSRLKTTMEQL 187 (191)
Q Consensus 164 ~~G~~~~~~~G~-~~~~l~~~i~~~ 187 (191)
++|+.+.+..|. +.+.|.++|+++
T Consensus 87 ~~g~~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 87 INGQVTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred ECCEEEEEecCCCCHHHHHHHHhcC
Confidence 999999999997 899999999864
No 16
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3.7e-22 Score=161.08 Aligned_cols=107 Identities=23% Similarity=0.505 Sum_probs=95.4
Q ss_pred CeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC-cEEEEEECCCcchHHHHHhcCCCccc
Q 029545 80 NILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVP 158 (191)
Q Consensus 80 ~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~-v~~~~vd~d~~~~~~l~~~~~I~~~P 158 (191)
+++.+ |..+|++.+.. ....+||||+||+|||++|+.+.|.+++++.+|.| +++++||||.+ +.++.+|||+++|
T Consensus 24 ~I~dv-T~anfe~~V~~-~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~--p~vAaqfgiqsIP 99 (304)
T COG3118 24 GIKDV-TEANFEQEVIQ-SSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAE--PMVAAQFGVQSIP 99 (304)
T ss_pred cceec-hHhHHHHHHHH-HccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcc--hhHHHHhCcCcCC
Confidence 35555 66999887754 23445999999999999999999999999999998 99999999998 9999999999999
Q ss_pred EEEEEeCCeEEEEEeCC-CHHHHHHHHHHHhcC
Q 029545 159 TFLFFQHGEKVAEIVGA-DVSRLKTTMEQLYKK 190 (191)
Q Consensus 159 t~~~~~~G~~~~~~~G~-~~~~l~~~i~~~~~~ 190 (191)
|++.|++|+.+..+.|. ..+.|++|+++++..
T Consensus 100 tV~af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 100 TVYAFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred eEEEeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 99999999999999999 777999999998753
No 17
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.88 E-value=5.7e-22 Score=138.94 Aligned_cols=92 Identities=21% Similarity=0.302 Sum_probs=81.3
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECC-CcchHHHHHhcCCCcccEEEEEeCC
Q 029545 88 EEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDID-QKGLESTLSKLNISAVPTFLFFQHG 166 (191)
Q Consensus 88 ~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d-~~~~~~l~~~~~I~~~Pt~~~~~~G 166 (191)
+.+.+++.. ..+++++|.|||+||++|+.+.|.+++++++++++.++.||.+ .. ++++++|+|.++||+++|++|
T Consensus 7 ~~~~~~~~~--~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~--~~l~~~~~V~~~PT~~lf~~g 82 (100)
T cd02999 7 NIALDLMAF--NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIK--PSLLSRYGVVGFPTILLFNST 82 (100)
T ss_pred hHHHHHHHh--cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCC--HHHHHhcCCeecCEEEEEcCC
Confidence 455566543 5789999999999999999999999999999999999999988 54 899999999999999999999
Q ss_pred eEEEEEeCC-CHHHHHHHH
Q 029545 167 EKVAEIVGA-DVSRLKTTM 184 (191)
Q Consensus 167 ~~~~~~~G~-~~~~l~~~i 184 (191)
.+.++.|. +.+.|.+|+
T Consensus 83 -~~~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 83 -PRVRYNGTRTLDSLAAFY 100 (100)
T ss_pred -ceeEecCCCCHHHHHhhC
Confidence 78889998 888888875
No 18
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.87 E-value=3.8e-21 Score=137.64 Aligned_cols=92 Identities=24% Similarity=0.332 Sum_probs=84.2
Q ss_pred CCCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcc
Q 029545 78 PSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAV 157 (191)
Q Consensus 78 ~~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~ 157 (191)
...+..+.+.++|++.+. ++++++|+||++||++|+.+.|.++++++++++++|++||+++. ++++++|+|.++
T Consensus 3 ~g~v~~i~~~~~~~~~i~----~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~--~~l~~~~~v~~v 76 (113)
T cd02989 3 HGKYREVSDEKEFFEIVK----SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKA--PFLVEKLNIKVL 76 (113)
T ss_pred CCCeEEeCCHHHHHHHHh----CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccC--HHHHHHCCCccC
Confidence 356778888899999875 36799999999999999999999999999999999999999997 899999999999
Q ss_pred cEEEEEeCCeEEEEEeCC
Q 029545 158 PTFLFFQHGEKVAEIVGA 175 (191)
Q Consensus 158 Pt~~~~~~G~~~~~~~G~ 175 (191)
||+++|++|+.+.++.|.
T Consensus 77 Pt~l~fk~G~~v~~~~g~ 94 (113)
T cd02989 77 PTVILFKNGKTVDRIVGF 94 (113)
T ss_pred CEEEEEECCEEEEEEECc
Confidence 999999999999988765
No 19
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.87 E-value=2.6e-21 Score=137.11 Aligned_cols=100 Identities=17% Similarity=0.336 Sum_probs=88.3
Q ss_pred HHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC-cEEEEEECCCcchHHHHHhcCCCcccEEEEEeC
Q 029545 87 GEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVPTFLFFQH 165 (191)
Q Consensus 87 ~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~-v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~ 165 (191)
.++|++.+.+ .+++++||.|+|+||++|+.+.|.+++++.++++ +.|++||+|+. ++++++|+|.+.||++||++
T Consensus 2 ~~~~d~~i~~--~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev--~dva~~y~I~amPtfvffkn 77 (114)
T cd02986 2 KKEVDQAIKS--TAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKV--PVYTQYFDISYIPSTIFFFN 77 (114)
T ss_pred HHHHHHHHHh--cCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEecccc--HHHHHhcCceeCcEEEEEEC
Confidence 4688888865 3689999999999999999999999999999999 99999999986 99999999999999999999
Q ss_pred CeEEE---------EEeCC--CHHHHHHHHHHHhcC
Q 029545 166 GEKVA---------EIVGA--DVSRLKTTMEQLYKK 190 (191)
Q Consensus 166 G~~~~---------~~~G~--~~~~l~~~i~~~~~~ 190 (191)
|+.+. ++++. +.+++.+.++.++..
T Consensus 78 gkh~~~d~gt~~~~k~~~~~~~k~~~idi~e~~yr~ 113 (114)
T cd02986 78 GQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRG 113 (114)
T ss_pred CcEEEEecCCCCCcEEEEEcCchhHHHHHHHHHHcC
Confidence 98764 44555 679999999887653
No 20
>PRK09381 trxA thioredoxin; Provisional
Probab=99.87 E-value=6.5e-21 Score=135.04 Aligned_cols=105 Identities=31% Similarity=0.604 Sum_probs=92.7
Q ss_pred CCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC-cEEEEEECCCcchHHHHHhcCCCcc
Q 029545 79 SNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAV 157 (191)
Q Consensus 79 ~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~-v~~~~vd~d~~~~~~l~~~~~I~~~ 157 (191)
..++++ +.++|++.+. +.+++++|+||++||++|+.+.|.++++++.+.+ +.++.+|++.. ..++++|+|.++
T Consensus 3 ~~v~~~-~~~~~~~~v~---~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~ 76 (109)
T PRK09381 3 DKIIHL-TDDSFDTDVL---KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN--PGTAPKYGIRGI 76 (109)
T ss_pred Ccceee-ChhhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCC--hhHHHhCCCCcC
Confidence 345566 5578987653 4578999999999999999999999999999976 89999999987 789999999999
Q ss_pred cEEEEEeCCeEEEEEeCC-CHHHHHHHHHHHhc
Q 029545 158 PTFLFFQHGEKVAEIVGA-DVSRLKTTMEQLYK 189 (191)
Q Consensus 158 Pt~~~~~~G~~~~~~~G~-~~~~l~~~i~~~~~ 189 (191)
||+++|++|+.+.++.|. +.++|.++|++.++
T Consensus 77 Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~~~ 109 (109)
T PRK09381 77 PTLLLFKNGEVAATKVGALSKGQLKEFLDANLA 109 (109)
T ss_pred CEEEEEeCCeEEEEecCCCCHHHHHHHHHHhcC
Confidence 999999999999999998 89999999998763
No 21
>PRK10996 thioredoxin 2; Provisional
Probab=99.87 E-value=1.2e-20 Score=139.73 Aligned_cols=103 Identities=24% Similarity=0.588 Sum_probs=91.7
Q ss_pred CCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC-cEEEEEECCCcchHHHHHhcCCCcc
Q 029545 79 SNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAV 157 (191)
Q Consensus 79 ~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~-v~~~~vd~d~~~~~~l~~~~~I~~~ 157 (191)
..++. .+.++|++.+. ++++++|+||++||++|+.+.|.++++++++.+ +.++++|++.+ ++++++|+|.++
T Consensus 35 ~~~i~-~~~~~~~~~i~----~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~--~~l~~~~~V~~~ 107 (139)
T PRK10996 35 GEVIN-ATGETLDKLLQ----DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAE--RELSARFRIRSI 107 (139)
T ss_pred CCCEE-cCHHHHHHHHh----CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCC--HHHHHhcCCCcc
Confidence 34444 47789998763 478999999999999999999999999998775 99999999987 899999999999
Q ss_pred cEEEEEeCCeEEEEEeCC-CHHHHHHHHHHHh
Q 029545 158 PTFLFFQHGEKVAEIVGA-DVSRLKTTMEQLY 188 (191)
Q Consensus 158 Pt~~~~~~G~~~~~~~G~-~~~~l~~~i~~~~ 188 (191)
||+++|++|+.+.++.|. +.+.|.+||++++
T Consensus 108 Ptlii~~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 108 PTIMIFKNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred CEEEEEECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 999999999999999998 8999999999864
No 22
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.86 E-value=5.6e-21 Score=132.31 Aligned_cols=96 Identities=36% Similarity=0.592 Sum_probs=85.8
Q ss_pred CHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhh-CCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEe
Q 029545 86 SGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAK-HPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQ 164 (191)
Q Consensus 86 s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~-~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~ 164 (191)
|.++|++.+.. ..+++++|+||++||++|+.+.+.+++++++ .+++.++.+|+++. ++++++|+|.++||+++|+
T Consensus 1 s~~~~~~~~~~--~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~--~~~~~~~~i~~~Pt~~~~~ 76 (97)
T cd02984 1 SEEEFEELLKS--DASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEEL--PEISEKFEITAVPTFVFFR 76 (97)
T ss_pred CHHHHHHHHhh--CCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccC--HHHHHhcCCccccEEEEEE
Confidence 45788888865 2368999999999999999999999999999 55699999999886 8999999999999999999
Q ss_pred CCeEEEEEeCCCHHHHHHHHH
Q 029545 165 HGEKVAEIVGADVSRLKTTME 185 (191)
Q Consensus 165 ~G~~~~~~~G~~~~~l~~~i~ 185 (191)
+|+.+.++.|.+.++|.+.|+
T Consensus 77 ~g~~~~~~~g~~~~~l~~~~~ 97 (97)
T cd02984 77 NGTIVDRVSGADPKELAKKVE 97 (97)
T ss_pred CCEEEEEEeCCCHHHHHHhhC
Confidence 999999999999998888763
No 23
>PTZ00051 thioredoxin; Provisional
Probab=99.86 E-value=8.3e-21 Score=131.78 Aligned_cols=96 Identities=35% Similarity=0.613 Sum_probs=87.7
Q ss_pred eEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEE
Q 029545 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTF 160 (191)
Q Consensus 81 ~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~ 160 (191)
+.++.+.++|++.+. .+++++|+||++||++|+.+.+.+++++++++++.++.+|+++. .+++++|+|.++||+
T Consensus 2 v~~i~~~~~~~~~~~----~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~ 75 (98)
T PTZ00051 2 VHIVTSQAEFESTLS----QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDEL--SEVAEKENITSMPTF 75 (98)
T ss_pred eEEecCHHHHHHHHh----cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcch--HHHHHHCCCceeeEE
Confidence 567888889988764 57899999999999999999999999999998999999999986 899999999999999
Q ss_pred EEEeCCeEEEEEeCCCHHHHHH
Q 029545 161 LFFQHGEKVAEIVGADVSRLKT 182 (191)
Q Consensus 161 ~~~~~G~~~~~~~G~~~~~l~~ 182 (191)
++|++|+.+.++.|...++|.+
T Consensus 76 ~~~~~g~~~~~~~G~~~~~~~~ 97 (98)
T PTZ00051 76 KVFKNGSVVDTLLGANDEALKQ 97 (98)
T ss_pred EEEeCCeEEEEEeCCCHHHhhc
Confidence 9999999999999998887764
No 24
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.86 E-value=3.5e-21 Score=136.39 Aligned_cols=97 Identities=25% Similarity=0.438 Sum_probs=83.0
Q ss_pred eEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhC----C---CcEEEEEECCCcchHHHHHhcC
Q 029545 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKH----P---HVTTYKIDIDQKGLESTLSKLN 153 (191)
Q Consensus 81 ~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~----~---~v~~~~vd~d~~~~~~l~~~~~ 153 (191)
++++ +.++|++.+. ++++++|.|||+||++|+.+.|.|+++++.+ + .+.++.||++.+ .+++++|+
T Consensus 3 v~~l-~~~~f~~~i~----~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~--~~l~~~~~ 75 (108)
T cd02996 3 IVSL-TSGNIDDILQ----SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE--SDIADRYR 75 (108)
T ss_pred eEEc-CHhhHHHHHh----cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHhCC
Confidence 4444 6789998763 4679999999999999999999999998764 2 388999999997 89999999
Q ss_pred CCcccEEEEEeCCeE-EEEEeCC-CHHHHHHHH
Q 029545 154 ISAVPTFLFFQHGEK-VAEIVGA-DVSRLKTTM 184 (191)
Q Consensus 154 I~~~Pt~~~~~~G~~-~~~~~G~-~~~~l~~~i 184 (191)
|+++||+++|++|+. ...+.|. +.++|.+||
T Consensus 76 v~~~Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 76 INKYPTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred CCcCCEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 999999999999984 4777787 888888875
No 25
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.86 E-value=5.2e-21 Score=135.23 Aligned_cols=98 Identities=18% Similarity=0.364 Sum_probs=85.8
Q ss_pred ecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC-cEEEEEECCCcchHHHHHhcCCCcccEEEE
Q 029545 84 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVPTFLF 162 (191)
Q Consensus 84 i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~-v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~ 162 (191)
..+.++|++.+. +++++++|.|||+||++|+.+.|.++++++.+.+ +.++.+|++.++..+++++|+|.++||+++
T Consensus 4 ~l~~~~~~~~i~---~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 4 ELTPKNFDKVVH---NTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKV 80 (109)
T ss_pred EcchhhHHHHHh---cCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEE
Confidence 346689998875 4678999999999999999999999999999876 899999999955589999999999999999
Q ss_pred EeCCe-----EEEEEeCC-CHHHHHHHH
Q 029545 163 FQHGE-----KVAEIVGA-DVSRLKTTM 184 (191)
Q Consensus 163 ~~~G~-----~~~~~~G~-~~~~l~~~i 184 (191)
|++|+ ....+.|. +.++|.+||
T Consensus 81 ~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 81 FRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred EeCCCcccccccccccCccCHHHHHHHh
Confidence 99886 45677788 899999887
No 26
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.86 E-value=1.3e-20 Score=134.80 Aligned_cols=92 Identities=27% Similarity=0.427 Sum_probs=80.8
Q ss_pred CCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCccc
Q 029545 79 SNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVP 158 (191)
Q Consensus 79 ~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~P 158 (191)
..+.++++ ++|.+.+... +.+++++|+||++||++|+.+.|.+++++++++++.|++||+++. +++++|+|.++|
T Consensus 4 g~v~~i~~-~~f~~~i~~~-~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~---~l~~~~~i~~~P 78 (113)
T cd02957 4 GEVREISS-KEFLEEVTKA-SKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA---FLVNYLDIKVLP 78 (113)
T ss_pred ceEEEEcH-HHHHHHHHcc-CCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh---HHHHhcCCCcCC
Confidence 45566665 8998887531 124899999999999999999999999999999999999999975 899999999999
Q ss_pred EEEEEeCCeEEEEEeCC
Q 029545 159 TFLFFQHGEKVAEIVGA 175 (191)
Q Consensus 159 t~~~~~~G~~~~~~~G~ 175 (191)
|+++|++|+.+.++.|.
T Consensus 79 t~~~f~~G~~v~~~~G~ 95 (113)
T cd02957 79 TLLVYKNGELIDNIVGF 95 (113)
T ss_pred EEEEEECCEEEEEEecH
Confidence 99999999999999885
No 27
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.85 E-value=1.1e-20 Score=131.97 Aligned_cols=97 Identities=21% Similarity=0.397 Sum_probs=83.4
Q ss_pred CeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCC--CcEEEEEECCCcchHHHHHhcCCCcc
Q 029545 80 NILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQKGLESTLSKLNISAV 157 (191)
Q Consensus 80 ~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~--~v~~~~vd~d~~~~~~l~~~~~I~~~ 157 (191)
+++.+ +.++|++.++ + .++|+|||+||++|+.+.|.|+++++.++ ++.++.||++++ ++++++|+|.++
T Consensus 2 ~v~~l-~~~~f~~~~~-----~-~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~--~~~~~~~~i~~~ 72 (101)
T cd02994 2 NVVEL-TDSNWTLVLE-----G-EWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQE--PGLSGRFFVTAL 72 (101)
T ss_pred ceEEc-ChhhHHHHhC-----C-CEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCC--HhHHHHcCCccc
Confidence 34555 6789998752 2 38999999999999999999999998875 489999999987 899999999999
Q ss_pred cEEEEEeCCeEEEEEeCC-CHHHHHHHHHH
Q 029545 158 PTFLFFQHGEKVAEIVGA-DVSRLKTTMEQ 186 (191)
Q Consensus 158 Pt~~~~~~G~~~~~~~G~-~~~~l~~~i~~ 186 (191)
||++++++|+. .++.|. +.++|.++|++
T Consensus 73 Pt~~~~~~g~~-~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 73 PTIYHAKDGVF-RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred CEEEEeCCCCE-EEecCCCCHHHHHHHHhC
Confidence 99999999984 778888 89999998863
No 28
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.85 E-value=1.6e-20 Score=148.91 Aligned_cols=109 Identities=19% Similarity=0.352 Sum_probs=94.2
Q ss_pred CCeEEecCHHHHHHHHhhhh-cCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC-cEEEEEECCCcchHHHHHhcCCCc
Q 029545 79 SNILVIESGEEFNSSLGKVK-DDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISA 156 (191)
Q Consensus 79 ~~~~~i~s~~~f~~~l~~~~-~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~-v~~~~vd~d~~~~~~l~~~~~I~~ 156 (191)
..++++ +.++|++.+.... ..+++++|+|||+||++|+.+.|.|+++++++++ +.++.+|++++ ++++++|+|++
T Consensus 30 ~~Vv~L-t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~--~~l~~~~~I~~ 106 (224)
T PTZ00443 30 NALVLL-NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRA--LNLAKRFAIKG 106 (224)
T ss_pred CCcEEC-CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCccc--HHHHHHcCCCc
Confidence 345544 7899999875321 1358999999999999999999999999999987 89999999987 89999999999
Q ss_pred ccEEEEEeCCeEEEEEeCC-CHHHHHHHHHHHhcC
Q 029545 157 VPTFLFFQHGEKVAEIVGA-DVSRLKTTMEQLYKK 190 (191)
Q Consensus 157 ~Pt~~~~~~G~~~~~~~G~-~~~~l~~~i~~~~~~ 190 (191)
+||+++|++|+.+....|. +.++|.+|+++.+++
T Consensus 107 ~PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~~ 141 (224)
T PTZ00443 107 YPTLLLFDKGKMYQYEGGDRSTEKLAAFALGDFKK 141 (224)
T ss_pred CCEEEEEECCEEEEeeCCCCCHHHHHHHHHHHHHh
Confidence 9999999999998888886 999999999988653
No 29
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.85 E-value=1.6e-20 Score=139.61 Aligned_cols=99 Identities=19% Similarity=0.443 Sum_probs=87.4
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC-cEEEEEECCCcchHHHHHhcCCCcccEEEEEe-C
Q 029545 88 EEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVPTFLFFQ-H 165 (191)
Q Consensus 88 ~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~-v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~-~ 165 (191)
.+|++.+ ..++++||+|||+||++|+.+.|.++++++++.+ +.|+.||++.....+++++|+|.++||+++|+ +
T Consensus 11 ~~~~~a~----~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~ 86 (142)
T cd02950 11 TPPEVAL----SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDRE 86 (142)
T ss_pred CCHHHHH----hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCC
Confidence 4555554 4688999999999999999999999999999875 88999999987567899999999999999995 8
Q ss_pred CeEEEEEeCC-CHHHHHHHHHHHhcC
Q 029545 166 GEKVAEIVGA-DVSRLKTTMEQLYKK 190 (191)
Q Consensus 166 G~~~~~~~G~-~~~~l~~~i~~~~~~ 190 (191)
|+.+.++.|. +.++|.++|++++++
T Consensus 87 G~~v~~~~G~~~~~~l~~~l~~l~~~ 112 (142)
T cd02950 87 GNEEGQSIGLQPKQVLAQNLDALVAG 112 (142)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHcC
Confidence 9999999999 789999999998753
No 30
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.85 E-value=1.7e-20 Score=130.85 Aligned_cols=93 Identities=30% Similarity=0.573 Sum_probs=82.3
Q ss_pred cCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCC----CcEEEEEECCCcchHHHHHhcCCCcccEE
Q 029545 85 ESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP----HVTTYKIDIDQKGLESTLSKLNISAVPTF 160 (191)
Q Consensus 85 ~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~----~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~ 160 (191)
.+.++|++.+. ++ +++|.|||+||++|+.+.|.++++++++. ++.++.||++++ ..++++|+|.++||+
T Consensus 5 l~~~~f~~~~~----~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~ 77 (102)
T cd03005 5 LTEDNFDHHIA----EG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH--RELCSEFQVRGYPTL 77 (102)
T ss_pred CCHHHHHHHhh----cC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC--hhhHhhcCCCcCCEE
Confidence 36788999874 23 59999999999999999999999999875 389999999987 799999999999999
Q ss_pred EEEeCCeEEEEEeCC-CHHHHHHHH
Q 029545 161 LFFQHGEKVAEIVGA-DVSRLKTTM 184 (191)
Q Consensus 161 ~~~~~G~~~~~~~G~-~~~~l~~~i 184 (191)
++|++|+.+.++.|. +.++|.+||
T Consensus 78 ~~~~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 78 LLFKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EEEeCCCeeeEeeCCCCHHHHHhhC
Confidence 999999999899998 888888774
No 31
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.84 E-value=4.4e-20 Score=138.39 Aligned_cols=92 Identities=27% Similarity=0.393 Sum_probs=80.6
Q ss_pred CCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCC--CcEEEEEECCCcchHHHHHhcCCCc
Q 029545 79 SNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQKGLESTLSKLNISA 156 (191)
Q Consensus 79 ~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~--~v~~~~vd~d~~~~~~l~~~~~I~~ 156 (191)
..+.+ .+.++|++.+.. +.+++++|+|||+||++|+.+.|.+++++++++ ++.|++||++++ ++++++|+|.+
T Consensus 28 ~~v~~-l~~~~f~~~l~~--~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~--~~la~~~~V~~ 102 (152)
T cd02962 28 EHIKY-FTPKTLEEELER--DKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF--PNVAEKFRVST 102 (152)
T ss_pred CccEE-cCHHHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC--HHHHHHcCcee
Confidence 44444 467899988753 456799999999999999999999999999986 399999999997 89999999988
Q ss_pred ------ccEEEEEeCCeEEEEEeCC
Q 029545 157 ------VPTFLFFQHGEKVAEIVGA 175 (191)
Q Consensus 157 ------~Pt~~~~~~G~~~~~~~G~ 175 (191)
+||+++|++|+.+.++.|.
T Consensus 103 ~~~v~~~PT~ilf~~Gk~v~r~~G~ 127 (152)
T cd02962 103 SPLSKQLPTIILFQGGKEVARRPYY 127 (152)
T ss_pred cCCcCCCCEEEEEECCEEEEEEecc
Confidence 9999999999999999973
No 32
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.84 E-value=3.8e-20 Score=131.08 Aligned_cols=90 Identities=14% Similarity=0.222 Sum_probs=82.5
Q ss_pred CHHHHHHHHhhhhcCCCcEEEEEEcCC--ChhhcchhHHHHHHHhhCCC-cEEEEEECCCcchHHHHHhcCCCcccEEEE
Q 029545 86 SGEEFNSSLGKVKDDSLPAIFYFTAAW--CGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVPTFLF 162 (191)
Q Consensus 86 s~~~f~~~l~~~~~~~k~vlV~F~a~w--C~~C~~~~p~~~~la~~~~~-v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~ 162 (191)
+.++|++.+ +.+..++|.||++| |++|+.+.|.++++++++++ +.|++||++++ ++++.+|+|+++||+++
T Consensus 16 ~~~~~~~~~----~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~--~~la~~f~V~sIPTli~ 89 (111)
T cd02965 16 DAATLDDWL----AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADE--QALAARFGVLRTPALLF 89 (111)
T ss_pred ccccHHHHH----hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCC--HHHHHHcCCCcCCEEEE
Confidence 668888776 35789999999997 99999999999999999988 88999999998 89999999999999999
Q ss_pred EeCCeEEEEEeCC-CHHHHH
Q 029545 163 FQHGEKVAEIVGA-DVSRLK 181 (191)
Q Consensus 163 ~~~G~~~~~~~G~-~~~~l~ 181 (191)
|++|+.+.++.|. +.+++.
T Consensus 90 fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 90 FRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred EECCEEEEEEeCccCHHHHh
Confidence 9999999999998 777765
No 33
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.84 E-value=8.9e-20 Score=126.40 Aligned_cols=98 Identities=31% Similarity=0.651 Sum_probs=88.0
Q ss_pred CHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC-cEEEEEECCCcchHHHHHhcCCCcccEEEEEe
Q 029545 86 SGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVPTFLFFQ 164 (191)
Q Consensus 86 s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~-v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~ 164 (191)
+.++|++.+. +++++++|+||++||++|+.+.+.++++++++++ +.++.+|++.+ ..++++|+|.++||+++|+
T Consensus 2 ~~~~~~~~~~---~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~P~~~~~~ 76 (101)
T TIGR01068 2 TDANFDETIA---SSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDEN--PDIAAKYGIRSIPTLLLFK 76 (101)
T ss_pred CHHHHHHHHh---hcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCC--HHHHHHcCCCcCCEEEEEe
Confidence 4578888765 4567999999999999999999999999988875 99999999987 7899999999999999999
Q ss_pred CCeEEEEEeCC-CHHHHHHHHHHHh
Q 029545 165 HGEKVAEIVGA-DVSRLKTTMEQLY 188 (191)
Q Consensus 165 ~G~~~~~~~G~-~~~~l~~~i~~~~ 188 (191)
+|+.+..+.|. +.+++.++|++.+
T Consensus 77 ~g~~~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 77 NGKEVDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred CCcEeeeecCCCCHHHHHHHHHhhC
Confidence 99999998898 8899999998753
No 34
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.84 E-value=5.8e-20 Score=128.46 Aligned_cols=95 Identities=22% Similarity=0.431 Sum_probs=83.8
Q ss_pred CHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCC--C-cEEEEEECCCcchHHHHHhcCCCcccEEEE
Q 029545 86 SGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--H-VTTYKIDIDQKGLESTLSKLNISAVPTFLF 162 (191)
Q Consensus 86 s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~--~-v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~ 162 (191)
+.++|++.++ .+++++|.||++||++|+++.|.++++++.++ + +.++.+|++.++...++++++|+++||+++
T Consensus 6 ~~~~~~~~~~----~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~ 81 (104)
T cd02997 6 TDEDFRKFLK----KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKY 81 (104)
T ss_pred chHhHHHHHh----hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEE
Confidence 5678988874 35699999999999999999999999998875 3 889999999854589999999999999999
Q ss_pred EeCCeEEEEEeCC-CHHHHHHHH
Q 029545 163 FQHGEKVAEIVGA-DVSRLKTTM 184 (191)
Q Consensus 163 ~~~G~~~~~~~G~-~~~~l~~~i 184 (191)
|++|+.+..+.|. +.+.|.+||
T Consensus 82 ~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 82 FENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EeCCCeeEEeCCCCCHHHHHhhC
Confidence 9999989999998 888888774
No 35
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.83 E-value=1e-19 Score=127.13 Aligned_cols=96 Identities=19% Similarity=0.326 Sum_probs=83.6
Q ss_pred ecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC-cEEEEEECCCcchHHHHHhcCCCcccEEEE
Q 029545 84 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVPTFLF 162 (191)
Q Consensus 84 i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~-v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~ 162 (191)
..+.++|++.+. +.+++++|+||++||++|+.+.|.|.++++++++ +.++.+|++++ .+++++|+|+++||+++
T Consensus 4 ~l~~~~~~~~i~---~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~i~~~P~~~~ 78 (103)
T cd03001 4 ELTDSNFDKKVL---NSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVH--QSLAQQYGVRGFPTIKV 78 (103)
T ss_pred EcCHHhHHHHHh---cCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcch--HHHHHHCCCCccCEEEE
Confidence 346789988875 3567899999999999999999999999999875 99999999987 89999999999999999
Q ss_pred EeCC-eEEEEEeCC-CHHHHHHHH
Q 029545 163 FQHG-EKVAEIVGA-DVSRLKTTM 184 (191)
Q Consensus 163 ~~~G-~~~~~~~G~-~~~~l~~~i 184 (191)
|++| +....+.|. +.++|.+|+
T Consensus 79 ~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 79 FGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred ECCCCcceeecCCCCCHHHHHHHh
Confidence 9988 455667777 889998886
No 36
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.83 E-value=1.7e-19 Score=138.40 Aligned_cols=106 Identities=19% Similarity=0.312 Sum_probs=89.8
Q ss_pred CCCCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCc
Q 029545 77 GPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISA 156 (191)
Q Consensus 77 ~~~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~ 156 (191)
....+..+.+.++|.+.+... ..+.++||+||++||++|+.+.|.+++++.++++++|++||+++. +++.+|+|.+
T Consensus 60 ~~g~v~ei~~~~~f~~~v~~~-~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~---~l~~~f~v~~ 135 (175)
T cd02987 60 RFGKVYELDSGEQFLDAIDKE-GKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT---GASDEFDTDA 135 (175)
T ss_pred CCCeEEEcCCHHHHHHHHHhc-CCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch---hhHHhCCCCC
Confidence 356777887779999887531 123599999999999999999999999999999999999999974 8999999999
Q ss_pred ccEEEEEeCCeEEEEEeCC--------CHHHHHHHHHH
Q 029545 157 VPTFLFFQHGEKVAEIVGA--------DVSRLKTTMEQ 186 (191)
Q Consensus 157 ~Pt~~~~~~G~~~~~~~G~--------~~~~l~~~i~~ 186 (191)
+||+++|++|+.+.++.|. +.++|+.+|.+
T Consensus 136 vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 136 LPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred CCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 9999999999999988865 34566666654
No 37
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.82 E-value=1.4e-19 Score=125.93 Aligned_cols=96 Identities=23% Similarity=0.468 Sum_probs=86.3
Q ss_pred CHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC---cEEEEEECCCcchHHHHHhcCCCcccEEEE
Q 029545 86 SGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH---VTTYKIDIDQKGLESTLSKLNISAVPTFLF 162 (191)
Q Consensus 86 s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~---v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~ 162 (191)
+.++|++.+. ++++++|+||++||++|+.+.+.++++++.+.+ +.++.+|++++ .+++++|+|.++|++++
T Consensus 2 ~~~~~~~~~~----~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~i~~~P~~~~ 75 (102)
T TIGR01126 2 TASNFDDIVL----SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAE--KDLASRFGVSGFPTIKF 75 (102)
T ss_pred chhhHHHHhc----cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccch--HHHHHhCCCCcCCEEEE
Confidence 5678888864 588999999999999999999999999998874 99999999987 89999999999999999
Q ss_pred EeCCeEEEEEeCC-CHHHHHHHHHHH
Q 029545 163 FQHGEKVAEIVGA-DVSRLKTTMEQL 187 (191)
Q Consensus 163 ~~~G~~~~~~~G~-~~~~l~~~i~~~ 187 (191)
|++|+....+.|. +.++|..||+++
T Consensus 76 ~~~~~~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 76 FPKGKKPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred ecCCCcceeecCCCCHHHHHHHHHhc
Confidence 9988777788898 889999999875
No 38
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.81 E-value=4.9e-19 Score=123.10 Aligned_cols=85 Identities=27% Similarity=0.495 Sum_probs=78.9
Q ss_pred cCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC-cEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCeEEEEEeCC-C
Q 029545 99 DDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGA-D 176 (191)
Q Consensus 99 ~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~-v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~-~ 176 (191)
+.+++++|+||++||+.|+.+.|.++++++++.+ +.++.+|++++ ++++++++|.++||+++|++|+.+.++.|. +
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~--~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~~ 88 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDED--QEIAEAAGIMGTPTVQFFKDKELVKEISGVKM 88 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCC--HHHHHHCCCeeccEEEEEECCeEEEEEeCCcc
Confidence 4788999999999999999999999999999875 99999999987 899999999999999999999999999998 8
Q ss_pred HHHHHHHHH
Q 029545 177 VSRLKTTME 185 (191)
Q Consensus 177 ~~~l~~~i~ 185 (191)
.++|.++|+
T Consensus 89 ~~~~~~~l~ 97 (97)
T cd02949 89 KSEYREFIE 97 (97)
T ss_pred HHHHHHhhC
Confidence 888888874
No 39
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.81 E-value=3.8e-19 Score=126.28 Aligned_cols=99 Identities=21% Similarity=0.324 Sum_probs=81.6
Q ss_pred ecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC--cEEEEEECCCcchHHHHH-hcCCCcccEE
Q 029545 84 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH--VTTYKIDIDQKGLESTLS-KLNISAVPTF 160 (191)
Q Consensus 84 i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~--v~~~~vd~d~~~~~~l~~-~~~I~~~Pt~ 160 (191)
..+.++|+.++.. .+++++++|.||++||++|+.+.|.++++++.+.+ +.++.||++.++ ..++. .++|+++||+
T Consensus 5 ~~~~~~~~~~~~~-~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~-~~~~~~~~~v~~~Pti 82 (109)
T cd02993 5 TLSRAEIEALAKG-ERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQ-REFAKEELQLKSFPTI 82 (109)
T ss_pred eccHHHHHHHHhh-hhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccc-hhhHHhhcCCCcCCEE
Confidence 3466899988752 35678999999999999999999999999998874 899999999842 56776 5999999999
Q ss_pred EEEeCC-eEEEEEeCC--CHHHHHHHH
Q 029545 161 LFFQHG-EKVAEIVGA--DVSRLKTTM 184 (191)
Q Consensus 161 ~~~~~G-~~~~~~~G~--~~~~l~~~i 184 (191)
++|++| .....+.|. +.++|..||
T Consensus 83 ~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 83 LFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 999765 456778883 888888774
No 40
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.81 E-value=1.6e-19 Score=126.98 Aligned_cols=94 Identities=22% Similarity=0.437 Sum_probs=80.4
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHH---HHHHhhCC-CcEEEEEECCCcc--hHHHHHhcCCCcccEEE
Q 029545 88 EEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVI---GELSAKHP-HVTTYKIDIDQKG--LESTLSKLNISAVPTFL 161 (191)
Q Consensus 88 ~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~---~~la~~~~-~v~~~~vd~d~~~--~~~l~~~~~I~~~Pt~~ 161 (191)
++|++++ +++++++|+||++||++|+.+.+.+ .++++.+. ++.++.||++.++ ..+++++|+|.++||++
T Consensus 2 ~~~~~~~----~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 2 AALAQAL----AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred HHHHHHH----HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence 4566655 4689999999999999999999988 57777777 5999999998743 47899999999999999
Q ss_pred EEe--CCeEEEEEeCC-CHHHHHHHHH
Q 029545 162 FFQ--HGEKVAEIVGA-DVSRLKTTME 185 (191)
Q Consensus 162 ~~~--~G~~~~~~~G~-~~~~l~~~i~ 185 (191)
+|+ +|+.+.++.|. +.++|.++|+
T Consensus 78 ~~~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 78 FYGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred EECCCCCCCCcccccccCHHHHHHHhC
Confidence 998 79999999998 9999988874
No 41
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.81 E-value=3e-19 Score=124.75 Aligned_cols=95 Identities=27% Similarity=0.515 Sum_probs=81.9
Q ss_pred ecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC---cEEEEEECCCcchHHHHHhcCCCcccEE
Q 029545 84 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH---VTTYKIDIDQKGLESTLSKLNISAVPTF 160 (191)
Q Consensus 84 i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~---v~~~~vd~d~~~~~~l~~~~~I~~~Pt~ 160 (191)
..+.++|++.+. +++++++|+||++||++|+.+.|.++++++.+++ +.++.+|++++ +++..+++.++||+
T Consensus 4 ~l~~~~f~~~i~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~---~~~~~~~~~~~Pt~ 77 (104)
T cd02995 4 VVVGKNFDEVVL---DSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN---DVPSEFVVDGFPTI 77 (104)
T ss_pred EEchhhhHHHHh---CCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch---hhhhhccCCCCCEE
Confidence 446789988875 4568999999999999999999999999998765 89999999985 67888999999999
Q ss_pred EEEeCCe--EEEEEeCC-CHHHHHHHH
Q 029545 161 LFFQHGE--KVAEIVGA-DVSRLKTTM 184 (191)
Q Consensus 161 ~~~~~G~--~~~~~~G~-~~~~l~~~i 184 (191)
++|++|+ ...++.|. +.++|.+||
T Consensus 78 ~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 78 LFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 9999887 56677887 888888875
No 42
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.80 E-value=7.3e-19 Score=125.80 Aligned_cols=89 Identities=19% Similarity=0.346 Sum_probs=79.7
Q ss_pred cCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCeEEE--EEeCC-
Q 029545 99 DDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVA--EIVGA- 175 (191)
Q Consensus 99 ~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~~~~--~~~G~- 175 (191)
.++..++|.||++||++|+.+.|.+++++..++.+.+..+|+++. ++++.+|+|.++||+++|++|+... ++.|.
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~--~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~ 97 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDED--KEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLP 97 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcC--HHHHHHcCCCcCCEEEEEeCCeecceEEEEecC
Confidence 457789999999999999999999999999887799999999986 8999999999999999999876554 67788
Q ss_pred CHHHHHHHHHHHhc
Q 029545 176 DVSRLKTTMEQLYK 189 (191)
Q Consensus 176 ~~~~l~~~i~~~~~ 189 (191)
+.++|.++|+.++.
T Consensus 98 ~~~el~~~i~~i~~ 111 (113)
T cd02975 98 AGYEFASLIEDIVR 111 (113)
T ss_pred chHHHHHHHHHHHh
Confidence 88999999998875
No 43
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.80 E-value=5.3e-19 Score=124.40 Aligned_cols=92 Identities=22% Similarity=0.344 Sum_probs=78.7
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCC----CcEEEEEECCCcchHHHHHhcCCCcccEEEEE
Q 029545 88 EEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP----HVTTYKIDIDQKGLESTLSKLNISAVPTFLFF 163 (191)
Q Consensus 88 ~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~----~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~ 163 (191)
++|++. .++++++|.||++||++|+.+.|.+++++++++ ++.++.+|++.. ++++++|+|.++||+++|
T Consensus 7 ~~~~~~-----~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~I~~~Pt~~l~ 79 (104)
T cd03000 7 DSFKDV-----RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY--SSIASEFGVRGYPTIKLL 79 (104)
T ss_pred hhhhhh-----ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC--HhHHhhcCCccccEEEEE
Confidence 566653 236799999999999999999999999999873 388999999886 799999999999999999
Q ss_pred eCCeEEEEEeCC-CHHHHHHHHHHH
Q 029545 164 QHGEKVAEIVGA-DVSRLKTTMEQL 187 (191)
Q Consensus 164 ~~G~~~~~~~G~-~~~~l~~~i~~~ 187 (191)
++|. ...+.|. +.++|.+++++.
T Consensus 80 ~~~~-~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 80 KGDL-AYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred cCCC-ceeecCCCCHHHHHHHHHhh
Confidence 8774 4567887 899999999875
No 44
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=3.5e-19 Score=153.68 Aligned_cols=105 Identities=18% Similarity=0.389 Sum_probs=92.7
Q ss_pred CCCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCC----CcEEEEEECCCcchHHHHHhcC
Q 029545 78 PSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP----HVTTYKIDIDQKGLESTLSKLN 153 (191)
Q Consensus 78 ~~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~----~v~~~~vd~d~~~~~~l~~~~~ 153 (191)
....+.+.+.++|+..+. .+..++|.||||||+||+++.|.+++.+..+. .+.+++||++.+ .++|.+|+
T Consensus 23 ~~~~Vl~Lt~dnf~~~i~----~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~--~~~~~~y~ 96 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKETIN----GHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE--SDLASKYE 96 (493)
T ss_pred cccceEEEecccHHHHhc----cCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh--hhhHhhhc
Confidence 444555557799999984 57799999999999999999999999988775 399999999998 89999999
Q ss_pred CCcccEEEEEeCCeEEEEEeCC-CHHHHHHHHHHHh
Q 029545 154 ISAVPTFLFFQHGEKVAEIVGA-DVSRLKTTMEQLY 188 (191)
Q Consensus 154 I~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~i~~~~ 188 (191)
|+++||+.+|+||+....|.|. +.+.+..|+.+..
T Consensus 97 v~gyPTlkiFrnG~~~~~Y~G~r~adgIv~wl~kq~ 132 (493)
T KOG0190|consen 97 VRGYPTLKIFRNGRSAQDYNGPREADGIVKWLKKQS 132 (493)
T ss_pred CCCCCeEEEEecCCcceeccCcccHHHHHHHHHhcc
Confidence 9999999999999987788888 9999999998764
No 45
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.79 E-value=1.1e-18 Score=122.02 Aligned_cols=94 Identities=30% Similarity=0.565 Sum_probs=81.2
Q ss_pred CHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCC---CcEEEEEECCC-cchHHHHHhcCCCcccEEE
Q 029545 86 SGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP---HVTTYKIDIDQ-KGLESTLSKLNISAVPTFL 161 (191)
Q Consensus 86 s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~---~v~~~~vd~d~-~~~~~l~~~~~I~~~Pt~~ 161 (191)
+.++|++.+. +++++++|.||++||++|+.+.|.++++++.++ ++.++.+|++. . .+++++|+|.++||++
T Consensus 6 ~~~~~~~~~~---~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~~~~i~~~P~~~ 80 (105)
T cd02998 6 TDSNFDKVVG---DDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEAN--KDLAKKYGVSGFPTLK 80 (105)
T ss_pred chhcHHHHhc---CCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcc--hhhHHhCCCCCcCEEE
Confidence 5688888654 466799999999999999999999999999876 38999999998 5 8999999999999999
Q ss_pred EEeCC-eEEEEEeCC-CHHHHHHHH
Q 029545 162 FFQHG-EKVAEIVGA-DVSRLKTTM 184 (191)
Q Consensus 162 ~~~~G-~~~~~~~G~-~~~~l~~~i 184 (191)
+|++| +....+.|. +.++|.+||
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 81 FFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EEeCCCCCccccCCccCHHHHHhhC
Confidence 99866 566677787 888888774
No 46
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.78 E-value=4e-18 Score=123.57 Aligned_cols=96 Identities=19% Similarity=0.322 Sum_probs=79.6
Q ss_pred cCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCc---------chHHHHHhcC--
Q 029545 85 ESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK---------GLESTLSKLN-- 153 (191)
Q Consensus 85 ~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~---------~~~~l~~~~~-- 153 (191)
.+.+++.+.++ +++.++|+|+++|||+|+.+.|.+++++++ .++.++.||++.+ +..++.++|+
T Consensus 11 it~~~~~~~i~----~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~ 85 (122)
T TIGR01295 11 TTVVRALEALD----KKETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIP 85 (122)
T ss_pred cCHHHHHHHHH----cCCcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCc
Confidence 46678888774 577899999999999999999999999998 4588999999854 2236667765
Q ss_pred --CCcccEEEEEeCCeEEEEEeCC--CHHHHHHHHH
Q 029545 154 --ISAVPTFLFFQHGEKVAEIVGA--DVSRLKTTME 185 (191)
Q Consensus 154 --I~~~Pt~~~~~~G~~~~~~~G~--~~~~l~~~i~ 185 (191)
|.++||+++|++|+.+.+..|. +.++|++++.
T Consensus 86 ~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 86 TSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred ccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 4569999999999999999995 6889988763
No 47
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.78 E-value=1.8e-18 Score=125.52 Aligned_cols=94 Identities=20% Similarity=0.318 Sum_probs=78.8
Q ss_pred hhcCC-CcEEEEEEcCCChhhcchhHHHH---HHHhhCC-CcEEEEEECCCc-----------chHHHHHhcCCCcccEE
Q 029545 97 VKDDS-LPAIFYFTAAWCGPCKFIWPVIG---ELSAKHP-HVTTYKIDIDQK-----------GLESTLSKLNISAVPTF 160 (191)
Q Consensus 97 ~~~~~-k~vlV~F~a~wC~~C~~~~p~~~---~la~~~~-~v~~~~vd~d~~-----------~~~~l~~~~~I~~~Pt~ 160 (191)
+++++ ++++|.||++||++|+.+.+.+. ++.+.+. ++.++.||++.+ ...+++.+|+|.++||+
T Consensus 9 a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~ 88 (125)
T cd02951 9 AAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTV 88 (125)
T ss_pred HHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEE
Confidence 44567 99999999999999999999874 5555554 488899998864 23689999999999999
Q ss_pred EEEeC--CeEEEEEeCC-CHHHHHHHHHHHhcC
Q 029545 161 LFFQH--GEKVAEIVGA-DVSRLKTTMEQLYKK 190 (191)
Q Consensus 161 ~~~~~--G~~~~~~~G~-~~~~l~~~i~~~~~~ 190 (191)
+||++ |+.+.++.|. +.+.+.++|+.++++
T Consensus 89 ~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 89 IFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred EEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 99974 6999999998 889999999988764
No 48
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.78 E-value=7.5e-19 Score=125.93 Aligned_cols=89 Identities=20% Similarity=0.355 Sum_probs=74.1
Q ss_pred EecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCC---C-cEEEEEECCCcchHHHHHhcCCCccc
Q 029545 83 VIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP---H-VTTYKIDIDQKGLESTLSKLNISAVP 158 (191)
Q Consensus 83 ~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~---~-v~~~~vd~d~~~~~~l~~~~~I~~~P 158 (191)
...+.++|++.+. +++++++|.||++||++|+.+.|.|+++++.++ + +.++.+||+.+...+++++|+|+++|
T Consensus 4 ~~l~~~~f~~~i~---~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P 80 (114)
T cd02992 4 IVLDAASFNSALL---GSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYP 80 (114)
T ss_pred EECCHHhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCC
Confidence 3447789999875 456899999999999999999999999998764 3 88999999876568999999999999
Q ss_pred EEEEEeCCeEEEEEeCC
Q 029545 159 TFLFFQHGEKVAEIVGA 175 (191)
Q Consensus 159 t~~~~~~G~~~~~~~G~ 175 (191)
|+++|++|+ .....|.
T Consensus 81 t~~lf~~~~-~~~~~~~ 96 (114)
T cd02992 81 TLRYFPPFS-KEATDGL 96 (114)
T ss_pred EEEEECCCC-ccCCCCC
Confidence 999999887 3333444
No 49
>PTZ00062 glutaredoxin; Provisional
Probab=99.77 E-value=4.4e-18 Score=133.11 Aligned_cols=92 Identities=14% Similarity=0.226 Sum_probs=83.5
Q ss_pred cCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEe
Q 029545 85 ESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQ 164 (191)
Q Consensus 85 ~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~ 164 (191)
.+.++|++.++ ++.+.+|++|||+||++|+.+.|.+.+++++|+++.|+.||.+ |+|.++||+++|+
T Consensus 4 ~~~ee~~~~i~---~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d----------~~V~~vPtfv~~~ 70 (204)
T PTZ00062 4 IKKEEKDKLIE---SNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA----------DANNEYGVFEFYQ 70 (204)
T ss_pred CCHHHHHHHHh---cCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc----------cCcccceEEEEEE
Confidence 46788888864 2346899999999999999999999999999999999999977 8999999999999
Q ss_pred CCeEEEEEeCCCHHHHHHHHHHHhc
Q 029545 165 HGEKVAEIVGADVSRLKTTMEQLYK 189 (191)
Q Consensus 165 ~G~~~~~~~G~~~~~l~~~i~~~~~ 189 (191)
+|+.+.++.|.++.+|..+++++.+
T Consensus 71 ~g~~i~r~~G~~~~~~~~~~~~~~~ 95 (204)
T PTZ00062 71 NSQLINSLEGCNTSTLVSFIRGWAQ 95 (204)
T ss_pred CCEEEeeeeCCCHHHHHHHHHHHcC
Confidence 9999999999999999999988764
No 50
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.77 E-value=3.3e-18 Score=117.82 Aligned_cols=93 Identities=24% Similarity=0.464 Sum_probs=81.5
Q ss_pred CHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhC---CCcEEEEEECCCcchHHHHHhcCCCcccEEEE
Q 029545 86 SGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKH---PHVTTYKIDIDQKGLESTLSKLNISAVPTFLF 162 (191)
Q Consensus 86 s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~---~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~ 162 (191)
+.++|.+.+. ++++++|.||++||++|+.+.+.++++++.+ .++.++.+|++++ ..++++|+|.++||+++
T Consensus 4 ~~~~~~~~i~----~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02961 4 TDDNFDELVK----DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN--NDLCSEYGVRGYPTIKL 77 (101)
T ss_pred cHHHHHHHHh----CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccch--HHHHHhCCCCCCCEEEE
Confidence 5678888875 3459999999999999999999999999988 3499999999986 89999999999999999
Q ss_pred EeCC-eEEEEEeCC-CHHHHHHHH
Q 029545 163 FQHG-EKVAEIVGA-DVSRLKTTM 184 (191)
Q Consensus 163 ~~~G-~~~~~~~G~-~~~~l~~~i 184 (191)
|++| +...++.|. +.+++.+|+
T Consensus 78 ~~~~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 78 FPNGSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred EcCCCcccccCCCCcCHHHHHhhC
Confidence 9877 777888887 888888764
No 51
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.76 E-value=8.3e-18 Score=145.54 Aligned_cols=106 Identities=23% Similarity=0.301 Sum_probs=87.1
Q ss_pred eEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC--cEEEEEECCCcchHHHHHhcCCCccc
Q 029545 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH--VTTYKIDIDQKGLESTLSKLNISAVP 158 (191)
Q Consensus 81 ~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~--v~~~~vd~d~~~~~~l~~~~~I~~~P 158 (191)
.+...+.++|++.++ ..+.++++||+|||+||++|+.+.|.|+++++++.+ +.|++||+|.++....+++|+|.++|
T Consensus 352 ~Vv~L~~~nf~~~v~-~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~P 430 (463)
T TIGR00424 352 NVVSLSRPGIENLLK-LEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFP 430 (463)
T ss_pred CeEECCHHHHHHHHh-hhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccc
Confidence 444457789999875 236788999999999999999999999999999864 89999999986433445789999999
Q ss_pred EEEEEeCCe-EEEEEeC-C-CHHHHHHHHHHH
Q 029545 159 TFLFFQHGE-KVAEIVG-A-DVSRLKTTMEQL 187 (191)
Q Consensus 159 t~~~~~~G~-~~~~~~G-~-~~~~l~~~i~~~ 187 (191)
|+++|++|+ ....|.| . +.+.|..||+.+
T Consensus 431 Tii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 431 TILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred eEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 999999885 3345654 4 999999999865
No 52
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.76 E-value=1.7e-17 Score=112.15 Aligned_cols=90 Identities=37% Similarity=0.756 Sum_probs=80.5
Q ss_pred HHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCeE
Q 029545 89 EFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEK 168 (191)
Q Consensus 89 ~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~~ 168 (191)
+|++.+. .+++++|+||++||++|+.+.+.++++++..+++.++.+|++.. .+++++|++.++||++++++|+.
T Consensus 2 ~~~~~~~----~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~v~~~P~~~~~~~g~~ 75 (93)
T cd02947 2 EFEELIK----SAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDEN--PELAEEYGVRSIPTFLFFKNGKE 75 (93)
T ss_pred chHHHHh----cCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCC--hhHHHhcCcccccEEEEEECCEE
Confidence 4566654 34899999999999999999999999999877799999999986 89999999999999999999999
Q ss_pred EEEEeCC-CHHHHHHHH
Q 029545 169 VAEIVGA-DVSRLKTTM 184 (191)
Q Consensus 169 ~~~~~G~-~~~~l~~~i 184 (191)
+..+.|. +.++|.++|
T Consensus 76 ~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 76 VDRVVGADPKEELEEFL 92 (93)
T ss_pred EEEEecCCCHHHHHHHh
Confidence 9999998 778888876
No 53
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.75 E-value=2e-17 Score=128.62 Aligned_cols=103 Identities=17% Similarity=0.264 Sum_probs=84.7
Q ss_pred CCCCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCc
Q 029545 77 GPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISA 156 (191)
Q Consensus 77 ~~~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~ 156 (191)
....+.++ +.++|...+... ..+.+|||+||++||++|+.+.|.|++++.+|++++|++||++.. ..+|+|.+
T Consensus 80 ~~G~v~ei-s~~~f~~eV~~a-s~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~-----~~~~~i~~ 152 (192)
T cd02988 80 KFGEVYEI-SKPDYVREVTEA-SKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC-----IPNYPDKN 152 (192)
T ss_pred CCCeEEEe-CHHHHHHHHHhc-CCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh-----HhhCCCCC
Confidence 34556666 668887766532 224689999999999999999999999999999999999999863 57899999
Q ss_pred ccEEEEEeCCeEEEEEeCC--------CHHHHHHHHHH
Q 029545 157 VPTFLFFQHGEKVAEIVGA--------DVSRLKTTMEQ 186 (191)
Q Consensus 157 ~Pt~~~~~~G~~~~~~~G~--------~~~~l~~~i~~ 186 (191)
+||+++|++|+.+.++.|. +.++|+.+|.+
T Consensus 153 lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 153 LPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred CCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 9999999999999999874 45667766654
No 54
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.74 E-value=1.8e-17 Score=119.19 Aligned_cols=99 Identities=19% Similarity=0.332 Sum_probs=81.3
Q ss_pred ecCHHHHHHHHhhhhcCCCcEEEEEEc-------CCChhhcchhHHHHHHHhhCC-CcEEEEEECCCc-----chHHHHH
Q 029545 84 IESGEEFNSSLGKVKDDSLPAIFYFTA-------AWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQK-----GLESTLS 150 (191)
Q Consensus 84 i~s~~~f~~~l~~~~~~~k~vlV~F~a-------~wC~~C~~~~p~~~~la~~~~-~v~~~~vd~d~~-----~~~~l~~ 150 (191)
+.+.++|.+.+.. .++++++|+||| +||++|+.+.|.+++++.+++ ++.|++||+++. ...++..
T Consensus 6 ~~~~~~f~~~i~~--~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~ 83 (119)
T cd02952 6 VRGYEEFLKLLKS--HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRT 83 (119)
T ss_pred ccCHHHHHHHHHh--cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHh
Confidence 4567888888764 346899999999 999999999999999999998 599999999873 2468999
Q ss_pred hcCCC-cccEEEEEeCCeEEEEEeCCCHHHHHHHH
Q 029545 151 KLNIS-AVPTFLFFQHGEKVAEIVGADVSRLKTTM 184 (191)
Q Consensus 151 ~~~I~-~~Pt~~~~~~G~~~~~~~G~~~~~l~~~i 184 (191)
+++|. ++||+++|++|+++....-.+.+.+..++
T Consensus 84 ~~~I~~~iPT~~~~~~~~~l~~~~c~~~~~~~~~~ 118 (119)
T cd02952 84 DPKLTTGVPTLLRWKTPQRLVEDECLQADLVEMFF 118 (119)
T ss_pred ccCcccCCCEEEEEcCCceecchhhcCHHHHHHhh
Confidence 99998 99999999988766543333777776654
No 55
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.74 E-value=1.4e-17 Score=119.08 Aligned_cols=98 Identities=12% Similarity=0.137 Sum_probs=80.7
Q ss_pred EecCHHHHHHHHhhhhcCCCcEEEEEEc--CCCh---hhcchhHHHHHHHhhCCCcEEEEEECCC---cchHHHHHhcCC
Q 029545 83 VIESGEEFNSSLGKVKDDSLPAIFYFTA--AWCG---PCKFIWPVIGELSAKHPHVTTYKIDIDQ---KGLESTLSKLNI 154 (191)
Q Consensus 83 ~i~s~~~f~~~l~~~~~~~k~vlV~F~a--~wC~---~C~~~~p~~~~la~~~~~v~~~~vd~d~---~~~~~l~~~~~I 154 (191)
...+.++|++.+. +++.+||.||| |||+ +|+++.|.+.+.+.. +.+++|||+. .+..+||++|+|
T Consensus 4 v~L~~~nF~~~v~----~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~---v~lakVd~~d~~~~~~~~L~~~y~I 76 (116)
T cd03007 4 VDLDTVTFYKVIP----KFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD---LLVAEVGIKDYGEKLNMELGERYKL 76 (116)
T ss_pred eECChhhHHHHHh----cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc---eEEEEEecccccchhhHHHHHHhCC
Confidence 3457799999874 47899999999 9999 898888888776643 8999999964 224899999999
Q ss_pred C--cccEEEEEeCCe--EEEEEeCC--CHHHHHHHHHHH
Q 029545 155 S--AVPTFLFFQHGE--KVAEIVGA--DVSRLKTTMEQL 187 (191)
Q Consensus 155 ~--~~Pt~~~~~~G~--~~~~~~G~--~~~~l~~~i~~~ 187 (191)
+ ++||+.+|++|+ ....+.|. +.+.|.+||++.
T Consensus 77 ~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 77 DKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 9 999999999985 44567773 899999999874
No 56
>PLN02309 5'-adenylylsulfate reductase
Probab=99.74 E-value=2.7e-17 Score=142.27 Aligned_cols=104 Identities=22% Similarity=0.340 Sum_probs=86.6
Q ss_pred eEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC--cEEEEEECC-CcchHHHHH-hcCCCc
Q 029545 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH--VTTYKIDID-QKGLESTLS-KLNISA 156 (191)
Q Consensus 81 ~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~--v~~~~vd~d-~~~~~~l~~-~~~I~~ 156 (191)
.+...+.++|++++.. .+.++++||+|||+||++|+.+.|.|+++++++.+ +.|++||++ .+ .+++. +|+|.+
T Consensus 346 ~Vv~Lt~~nfe~ll~~-~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~--~~la~~~~~I~~ 422 (457)
T PLN02309 346 NVVALSRAGIENLLKL-ENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQ--KEFAKQELQLGS 422 (457)
T ss_pred CcEECCHHHHHHHHHh-hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcc--hHHHHhhCCCce
Confidence 4445577899998752 36789999999999999999999999999999864 999999999 54 67786 699999
Q ss_pred ccEEEEEeCCe-EEEEEeC-C-CHHHHHHHHHHH
Q 029545 157 VPTFLFFQHGE-KVAEIVG-A-DVSRLKTTMEQL 187 (191)
Q Consensus 157 ~Pt~~~~~~G~-~~~~~~G-~-~~~~l~~~i~~~ 187 (191)
+||+++|++|. ....+.| . +.+.|..||+++
T Consensus 423 ~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 423 FPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred eeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 99999998775 3345654 3 999999999875
No 57
>PTZ00102 disulphide isomerase; Provisional
Probab=99.73 E-value=5.6e-17 Score=141.66 Aligned_cols=101 Identities=18% Similarity=0.394 Sum_probs=88.8
Q ss_pred EEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCC----CcEEEEEECCCcchHHHHHhcCCCcc
Q 029545 82 LVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP----HVTTYKIDIDQKGLESTLSKLNISAV 157 (191)
Q Consensus 82 ~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~----~v~~~~vd~d~~~~~~l~~~~~I~~~ 157 (191)
+...+.++|++.+. +++.++|.|||+||++|+++.|.++++++.+. ++.++.|||+.+ .++|++|+|.++
T Consensus 34 v~~l~~~~f~~~i~----~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~--~~l~~~~~i~~~ 107 (477)
T PTZ00102 34 VTVLTDSTFDKFIT----ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE--MELAQEFGVRGY 107 (477)
T ss_pred cEEcchhhHHHHHh----cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC--HHHHHhcCCCcc
Confidence 44557789999874 46799999999999999999999999887653 499999999987 899999999999
Q ss_pred cEEEEEeCCeEEEEEeCC-CHHHHHHHHHHHhc
Q 029545 158 PTFLFFQHGEKVAEIVGA-DVSRLKTTMEQLYK 189 (191)
Q Consensus 158 Pt~~~~~~G~~~~~~~G~-~~~~l~~~i~~~~~ 189 (191)
||+++|++|+.+ ++.|. +.+.|.+|+++.++
T Consensus 108 Pt~~~~~~g~~~-~y~g~~~~~~l~~~l~~~~~ 139 (477)
T PTZ00102 108 PTIKFFNKGNPV-NYSGGRTADGIVSWIKKLTG 139 (477)
T ss_pred cEEEEEECCceE-EecCCCCHHHHHHHHHHhhC
Confidence 999999999877 88887 99999999999865
No 58
>PTZ00102 disulphide isomerase; Provisional
Probab=99.72 E-value=3.5e-17 Score=142.93 Aligned_cols=107 Identities=25% Similarity=0.431 Sum_probs=91.3
Q ss_pred CCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC---cEEEEEECCCcchHHHHHhcCCC
Q 029545 79 SNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH---VTTYKIDIDQKGLESTLSKLNIS 155 (191)
Q Consensus 79 ~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~---v~~~~vd~d~~~~~~l~~~~~I~ 155 (191)
.+.+...+.++|++.+. +++++++|+|||+||++|+.+.|.++++++.+++ +.++++|++.+ ...+++++|+
T Consensus 356 ~~~v~~l~~~~f~~~v~---~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~--~~~~~~~~v~ 430 (477)
T PTZ00102 356 DGPVKVVVGNTFEEIVF---KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTAN--ETPLEEFSWS 430 (477)
T ss_pred CCCeEEecccchHHHHh---cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCC--ccchhcCCCc
Confidence 34455556799998854 5689999999999999999999999999988763 88999999987 6778999999
Q ss_pred cccEEEEEeCCeEE-EEEeCC-CHHHHHHHHHHHhcC
Q 029545 156 AVPTFLFFQHGEKV-AEIVGA-DVSRLKTTMEQLYKK 190 (191)
Q Consensus 156 ~~Pt~~~~~~G~~~-~~~~G~-~~~~l~~~i~~~~~~ 190 (191)
++||+++|++|+.+ .++.|. +.+.|.++|+++...
T Consensus 431 ~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 431 AFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHATN 467 (477)
T ss_pred ccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCCC
Confidence 99999999977665 478897 999999999998753
No 59
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.72 E-value=7e-17 Score=139.95 Aligned_cols=101 Identities=22% Similarity=0.432 Sum_probs=89.0
Q ss_pred EecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCC----CcEEEEEECCCcchHHHHHhcCCCccc
Q 029545 83 VIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP----HVTTYKIDIDQKGLESTLSKLNISAVP 158 (191)
Q Consensus 83 ~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~----~v~~~~vd~d~~~~~~l~~~~~I~~~P 158 (191)
...+.++|+++++ ++++++|.|||+||++|+.+.|.+.++++.+. ++.++.|||+.+ .++|++|+|.++|
T Consensus 4 ~~l~~~~~~~~i~----~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~--~~l~~~~~i~~~P 77 (462)
T TIGR01130 4 LVLTKDNFDDFIK----SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE--KDLAQKYGVSGYP 77 (462)
T ss_pred eECCHHHHHHHHh----cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc--HHHHHhCCCcccc
Confidence 3447789999874 46799999999999999999999999887653 389999999997 8999999999999
Q ss_pred EEEEEeCCeE-EEEEeCC-CHHHHHHHHHHHhc
Q 029545 159 TFLFFQHGEK-VAEIVGA-DVSRLKTTMEQLYK 189 (191)
Q Consensus 159 t~~~~~~G~~-~~~~~G~-~~~~l~~~i~~~~~ 189 (191)
|+++|++|+. +..+.|. +.+.|.+|+++.+.
T Consensus 78 t~~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~ 110 (462)
T TIGR01130 78 TLKIFRNGEDSVSDYNGPRDADGIVKYMKKQSG 110 (462)
T ss_pred EEEEEeCCccceeEecCCCCHHHHHHHHHHhcC
Confidence 9999999988 7888888 99999999998764
No 60
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.72 E-value=6.5e-17 Score=144.33 Aligned_cols=111 Identities=23% Similarity=0.422 Sum_probs=96.2
Q ss_pred CCCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHH---HHHHhhCCCcEEEEEECCCc--chHHHHHhc
Q 029545 78 PSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVI---GELSAKHPHVTTYKIDIDQK--GLESTLSKL 152 (191)
Q Consensus 78 ~~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~---~~la~~~~~v~~~~vd~d~~--~~~~l~~~~ 152 (191)
......+.+.+++++.++++++++|+++|+|||+||++|+.+++.. .++.++++++.++++|++++ +..+++++|
T Consensus 451 ~~~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~ 530 (571)
T PRK00293 451 HLNFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHY 530 (571)
T ss_pred CCCceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHc
Confidence 3456778889999999988888899999999999999999999875 67778888899999999864 346899999
Q ss_pred CCCcccEEEEEe-CCeEE--EEEeCC-CHHHHHHHHHHHh
Q 029545 153 NISAVPTFLFFQ-HGEKV--AEIVGA-DVSRLKTTMEQLY 188 (191)
Q Consensus 153 ~I~~~Pt~~~~~-~G~~~--~~~~G~-~~~~l~~~i~~~~ 188 (191)
+|.++||+++|+ +|+++ .++.|. +.+++.+++++..
T Consensus 531 ~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 531 NVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred CCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 999999999996 88874 678897 9999999998863
No 61
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.8e-17 Score=141.92 Aligned_cols=101 Identities=28% Similarity=0.514 Sum_probs=84.3
Q ss_pred CeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC---cEEEEEECCCcchHHHHHhcCCCc
Q 029545 80 NILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH---VTTYKIDIDQKGLESTLSKLNISA 156 (191)
Q Consensus 80 ~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~---v~~~~vd~d~~~~~~l~~~~~I~~ 156 (191)
.-+.+...++|++++. +++|.|||.||||||+||+++.|.|++|++.|++ +.++++|.+.++.+. ..+.+
T Consensus 366 ~pVkvvVgknfd~iv~---de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~~~----~~~~~ 438 (493)
T KOG0190|consen 366 SPVKVVVGKNFDDIVL---DEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDVPS----LKVDG 438 (493)
T ss_pred CCeEEEeecCHHHHhh---ccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccCcc----ccccc
Confidence 3355556699999854 7899999999999999999999999999999875 999999999986444 47788
Q ss_pred ccEEEEEeCCe--EEEEEeCC-CHHHHHHHHHHH
Q 029545 157 VPTFLFFQHGE--KVAEIVGA-DVSRLKTTMEQL 187 (191)
Q Consensus 157 ~Pt~~~~~~G~--~~~~~~G~-~~~~l~~~i~~~ 187 (191)
+||+.+|+.|. ....+.|. +.++|..++++.
T Consensus 439 fPTI~~~pag~k~~pv~y~g~R~le~~~~fi~~~ 472 (493)
T KOG0190|consen 439 FPTILFFPAGHKSNPVIYNGDRTLEDLKKFIKKS 472 (493)
T ss_pred cceEEEecCCCCCCCcccCCCcchHHHHhhhccC
Confidence 99999998776 34556677 899999998765
No 62
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.69 E-value=2.3e-17 Score=118.70 Aligned_cols=100 Identities=19% Similarity=0.458 Sum_probs=76.8
Q ss_pred HHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCC-CcEEEEEECCCcchHHHHHhcCCCc--ccEEEEEe-
Q 029545 89 EFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQKGLESTLSKLNISA--VPTFLFFQ- 164 (191)
Q Consensus 89 ~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~-~v~~~~vd~d~~~~~~l~~~~~I~~--~Pt~~~~~- 164 (191)
+++++++.++.++++++|.|||+||++|+.+.|.+.+...... +..|+.||++.++ ......|++.+ +||++|++
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~-~~~~~~~~~~g~~vPt~~f~~~ 85 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDE-EPKDEEFSPDGGYIPRILFLDP 85 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCC-CchhhhcccCCCccceEEEECC
Confidence 5778888888899999999999999999999999988766432 3567777777652 24457889886 99999996
Q ss_pred CCeEEEEEe---CC-CHHHHHHHHHHHhc
Q 029545 165 HGEKVAEIV---GA-DVSRLKTTMEQLYK 189 (191)
Q Consensus 165 ~G~~~~~~~---G~-~~~~l~~~i~~~~~ 189 (191)
+|+.+.++. |. +.+.+.+.|+.+++
T Consensus 86 ~Gk~~~~~~~~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 86 SGDVHPEIINKKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred CCCCchhhccCCCCccccccCCCHHHHHh
Confidence 999887544 44 66666666666543
No 63
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.69 E-value=5.9e-17 Score=130.94 Aligned_cols=97 Identities=20% Similarity=0.343 Sum_probs=80.2
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC----cEEEEEECCCcchHHHHHhcCCCcccEEEEE
Q 029545 88 EEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH----VTTYKIDIDQKGLESTLSKLNISAVPTFLFF 163 (191)
Q Consensus 88 ~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~----v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~ 163 (191)
+++++..+..+ .+..|+|.||||||+||+++.|.|.++.-++++ +++.++|++.. +.++.+|+|+++||+.+|
T Consensus 31 eDLddkFkdnk-dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f--~aiAnefgiqGYPTIk~~ 107 (468)
T KOG4277|consen 31 EDLDDKFKDNK-DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRF--PAIANEFGIQGYPTIKFF 107 (468)
T ss_pred hhhhHHhhhcc-cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccc--hhhHhhhccCCCceEEEe
Confidence 34444444333 457999999999999999999999998877764 89999999997 999999999999999999
Q ss_pred eCCeEEEEEeCCCHHHHHHHHHHH
Q 029545 164 QHGEKVAEIVGADVSRLKTTMEQL 187 (191)
Q Consensus 164 ~~G~~~~~~~G~~~~~l~~~i~~~ 187 (191)
++|..+....|...++|.++..+.
T Consensus 108 kgd~a~dYRG~R~Kd~iieFAhR~ 131 (468)
T KOG4277|consen 108 KGDHAIDYRGGREKDAIIEFAHRC 131 (468)
T ss_pred cCCeeeecCCCccHHHHHHHHHhc
Confidence 988877654445899999987765
No 64
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.68 E-value=2.1e-16 Score=125.10 Aligned_cols=137 Identities=13% Similarity=0.141 Sum_probs=95.7
Q ss_pred CCCCCCCCccccccCCCCCCccCCCCCcc----cccccccCCCCCCCCeEEecCHHHHHHHHhhhhcCCCcE-EEEEEcC
Q 029545 37 NTTVPKIPSFRNYIPASSSQSQSQMLPSL----QFHRTLFSSPDGPSNILVIESGEEFNSSLGKVKDDSLPA-IFYFTAA 111 (191)
Q Consensus 37 ~~~v~~~p~~~~~~~~~~~~~~~~~~p~~----~~~~~~~s~~~~~~~~~~i~s~~~f~~~l~~~~~~~k~v-lV~F~a~ 111 (191)
..+|.++|++.+|..+......+.+.+.. .|...... .. +.....+.+..+. +.. .++++ ++.||++
T Consensus 72 ~~~V~~~Pt~~~f~~g~~~~~~~~G~~~~~~l~~~i~~~~~-~~---~~~~~L~~~~~~~-l~~---~~~pv~I~~F~a~ 143 (215)
T TIGR02187 72 KYGVERVPTTIILEEGKDGGIRYTGIPAGYEFAALIEDIVR-VS---QGEPGLSEKTVEL-LQS---LDEPVRIEVFVTP 143 (215)
T ss_pred HcCCCccCEEEEEeCCeeeEEEEeecCCHHHHHHHHHHHHH-hc---CCCCCCCHHHHHH-HHh---cCCCcEEEEEECC
Confidence 46899999999998775543222233221 11111111 11 1112224333333 322 34454 5559999
Q ss_pred CChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCeEEEEEeCC-CHHHHHHHHHH
Q 029545 112 WCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGA-DVSRLKTTMEQ 186 (191)
Q Consensus 112 wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~i~~ 186 (191)
||++|+.+.+.+++++.+++++.+..+|.+.+ ++++++|+|.++||++++++|+. +.|. +.++|.++|++
T Consensus 144 ~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~--~~~~~~~~V~~vPtl~i~~~~~~---~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 144 TCPYCPYAVLMAHKFALANDKILGEMIEANEN--PDLAEKYGVMSVPKIVINKGVEE---FVGAYPEEQFLEYILS 214 (215)
T ss_pred CCCCcHHHHHHHHHHHHhcCceEEEEEeCCCC--HHHHHHhCCccCCEEEEecCCEE---EECCCCHHHHHHHHHh
Confidence 99999999999999999987899999999987 89999999999999999988864 7788 88899999875
No 65
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.66 E-value=1.3e-15 Score=102.06 Aligned_cols=79 Identities=23% Similarity=0.365 Sum_probs=69.5
Q ss_pred EEEEEEcCCChhhcchhHHHHHHHhhCCC-cEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCeEEEEEeCC-CHHHHH
Q 029545 104 AIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGA-DVSRLK 181 (191)
Q Consensus 104 vlV~F~a~wC~~C~~~~p~~~~la~~~~~-v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~-~~~~l~ 181 (191)
.+..||++||++|+.+.+.+++++++++. +.+..||++++ ++++++|++.++||+++ +|+ .++.|. +.++|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~vPt~~~--~g~--~~~~G~~~~~~l~ 75 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMEN--PQKAMEYGIMAVPAIVI--NGD--VEFIGAPTKEELV 75 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccC--HHHHHHcCCccCCEEEE--CCE--EEEecCCCHHHHH
Confidence 37789999999999999999999998865 89999999887 89999999999999986 776 367788 899999
Q ss_pred HHHHHHh
Q 029545 182 TTMEQLY 188 (191)
Q Consensus 182 ~~i~~~~ 188 (191)
++|++.+
T Consensus 76 ~~l~~~~ 82 (82)
T TIGR00411 76 EAIKKRL 82 (82)
T ss_pred HHHHhhC
Confidence 9998753
No 66
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.66 E-value=2e-15 Score=119.52 Aligned_cols=87 Identities=22% Similarity=0.302 Sum_probs=75.0
Q ss_pred CcEEEEEEc---CCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCeEEE-EEeCC-C
Q 029545 102 LPAIFYFTA---AWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVA-EIVGA-D 176 (191)
Q Consensus 102 k~vlV~F~a---~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~~~~-~~~G~-~ 176 (191)
...++.|++ +||++|+.+.|.+++++++++++.+..+++|.++.++++++|+|.++||+++|++|+.+. ++.|. +
T Consensus 20 ~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~~ 99 (215)
T TIGR02187 20 PVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIPA 99 (215)
T ss_pred CeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecCC
Confidence 355667888 999999999999999999997766666666654459999999999999999999999984 88898 8
Q ss_pred HHHHHHHHHHHh
Q 029545 177 VSRLKTTMEQLY 188 (191)
Q Consensus 177 ~~~l~~~i~~~~ 188 (191)
.+++.++|+.++
T Consensus 100 ~~~l~~~i~~~~ 111 (215)
T TIGR02187 100 GYEFAALIEDIV 111 (215)
T ss_pred HHHHHHHHHHHH
Confidence 899999998875
No 67
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.64 E-value=8e-16 Score=107.44 Aligned_cols=86 Identities=14% Similarity=0.156 Sum_probs=77.7
Q ss_pred CCcEEEEEEcCCChhhcchhHHHHHHHhhCCC-cEEEEEECCCcchHHHHHhcCCC--cccEEEEEeC--CeEEEEEeCC
Q 029545 101 SLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNIS--AVPTFLFFQH--GEKVAEIVGA 175 (191)
Q Consensus 101 ~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~-v~~~~vd~d~~~~~~l~~~~~I~--~~Pt~~~~~~--G~~~~~~~G~ 175 (191)
++++++.|+++||++|+.+.|.++++++++.+ +.|++||+++. +++++.|+|. ++|+++++++ |++.....|.
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~--~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~ 89 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDF--GRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEE 89 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhh--HHHHHHcCCChhhCCEEEEEecccccccCCCccc
Confidence 67999999999999999999999999999987 99999999996 7899999999 9999999987 7666655566
Q ss_pred -CHHHHHHHHHHHh
Q 029545 176 -DVSRLKTTMEQLY 188 (191)
Q Consensus 176 -~~~~l~~~i~~~~ 188 (191)
+.+.|.+|+++++
T Consensus 90 ~~~~~l~~fi~~~~ 103 (103)
T cd02982 90 LTAESLEEFVEDFL 103 (103)
T ss_pred cCHHHHHHHHHhhC
Confidence 8999999998763
No 68
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=8.8e-16 Score=131.24 Aligned_cols=166 Identities=17% Similarity=0.262 Sum_probs=121.9
Q ss_pred HhhhCCCCcchhhhhhhccCCCCCCCCCCccccccCCCCCCccCCCCCccccccccc------CCCCCCCCeEEecCHHH
Q 029545 16 RQVLNPNSTNIAKSLISHSTNNTTVPKIPSFRNYIPASSSQSQSQMLPSLQFHRTLF------SSPDGPSNILVIESGEE 89 (191)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~------s~~~~~~~~~~i~s~~~ 89 (191)
+.-++++..+|..+--.+. .-+|++||++..|.++ ..+..+.......-...+. +.......-+...+.++
T Consensus 77 ~~~~~~~~vd~~~~~~~~~--~y~i~gfPtl~~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 153 (383)
T KOG0191|consen 77 KGKVKIGAVDCDEHKDLCE--KYGIQGFPTLKVFRPG-KKPIDYSGPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDN 153 (383)
T ss_pred cCceEEEEeCchhhHHHHH--hcCCccCcEEEEEcCC-CceeeccCcccHHHHHHHHHHhhccccccccCCceEEccccc
Confidence 3357788888876666666 7899999999999998 3333333321110000000 10112222144445688
Q ss_pred HHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCC---CcEEEEEECCCcchHHHHHhcCCCcccEEEEEeCC
Q 029545 90 FNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP---HVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHG 166 (191)
Q Consensus 90 f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~---~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G 166 (191)
|+..+. +.+..++|.||+|||++|+.+.|.|++++..+. ++.++.+|++.+ ..++.+++|.++||+.+|.+|
T Consensus 154 ~~~~~~---~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~--~~~~~~~~v~~~Pt~~~f~~~ 228 (383)
T KOG0191|consen 154 FDETVK---DSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVH--KSLASRLEVRGYPTLKLFPPG 228 (383)
T ss_pred hhhhhh---ccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchH--HHHhhhhcccCCceEEEecCC
Confidence 887754 567899999999999999999999999999874 399999999954 899999999999999999988
Q ss_pred eE-EEEEeCC-CHHHHHHHHHHHhc
Q 029545 167 EK-VAEIVGA-DVSRLKTTMEQLYK 189 (191)
Q Consensus 167 ~~-~~~~~G~-~~~~l~~~i~~~~~ 189 (191)
.. ...+.|. +.+.+..|+++..+
T Consensus 229 ~~~~~~~~~~R~~~~i~~~v~~~~~ 253 (383)
T KOG0191|consen 229 EEDIYYYSGLRDSDSIVSFVEKKER 253 (383)
T ss_pred CcccccccccccHHHHHHHHHhhcC
Confidence 88 6666676 99999999988754
No 69
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.62 E-value=1.2e-15 Score=108.24 Aligned_cols=87 Identities=21% Similarity=0.385 Sum_probs=68.1
Q ss_pred hcCCCcEEEEEEcCCChhhcchhHHHHH---HHhhCC-CcEEEEEECCCcc------------------hHHHHHhcCCC
Q 029545 98 KDDSLPAIFYFTAAWCGPCKFIWPVIGE---LSAKHP-HVTTYKIDIDQKG------------------LESTLSKLNIS 155 (191)
Q Consensus 98 ~~~~k~vlV~F~a~wC~~C~~~~p~~~~---la~~~~-~v~~~~vd~d~~~------------------~~~l~~~~~I~ 155 (191)
+.++++++++||++||++|+.+.+.+.+ +...+. ++.++.++++... ..++.++|+|.
T Consensus 2 ~~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 81 (112)
T PF13098_consen 2 KGNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVN 81 (112)
T ss_dssp ETTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--
T ss_pred CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCC
Confidence 4578999999999999999999999875 444444 4888888887642 24689999999
Q ss_pred cccEEEEEe-CCeEEEEEeCC-CHHHHHHHH
Q 029545 156 AVPTFLFFQ-HGEKVAEIVGA-DVSRLKTTM 184 (191)
Q Consensus 156 ~~Pt~~~~~-~G~~~~~~~G~-~~~~l~~~i 184 (191)
++||+++++ +|+.+..+.|. ++++|.++|
T Consensus 82 gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 82 GTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred ccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 999999996 89999999999 999998875
No 70
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.61 E-value=3.7e-15 Score=129.21 Aligned_cols=103 Identities=22% Similarity=0.424 Sum_probs=86.3
Q ss_pred CeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC----cEEEEEECCCcchHHHHHhcCCC
Q 029545 80 NILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH----VTTYKIDIDQKGLESTLSKLNIS 155 (191)
Q Consensus 80 ~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~----v~~~~vd~d~~~~~~l~~~~~I~ 155 (191)
+.+...+.++|++.+. +.+++++|+|||+||++|+.+.|.++++++.+.+ +.++.+|++.++ +.. ++|.
T Consensus 346 ~~v~~l~~~~f~~~v~---~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~---~~~-~~i~ 418 (462)
T TIGR01130 346 GPVKVLVGKNFDEIVL---DETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND---VPP-FEVE 418 (462)
T ss_pred CccEEeeCcCHHHHhc---cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc---cCC-CCcc
Confidence 3445557799999864 5688999999999999999999999999998864 889999999863 334 9999
Q ss_pred cccEEEEEeCCeEE--EEEeCC-CHHHHHHHHHHHhc
Q 029545 156 AVPTFLFFQHGEKV--AEIVGA-DVSRLKTTMEQLYK 189 (191)
Q Consensus 156 ~~Pt~~~~~~G~~~--~~~~G~-~~~~l~~~i~~~~~ 189 (191)
++||+++|++|+.. ..+.|. +.+.|.+||++...
T Consensus 419 ~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 455 (462)
T TIGR01130 419 GFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHAT 455 (462)
T ss_pred ccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcCC
Confidence 99999999988763 567777 99999999998764
No 71
>PHA02125 thioredoxin-like protein
Probab=99.60 E-value=8.9e-15 Score=97.06 Aligned_cols=70 Identities=27% Similarity=0.631 Sum_probs=58.6
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCeEEEEEeCC--CHHHHHH
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGA--DVSRLKT 182 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~--~~~~l~~ 182 (191)
+++||++||++|+.+.|.++++. +.++.||.+.. .+++++|+|.++||++ +|+.+.++.|. +..+|++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~--~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~ 71 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEG--VELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKE 71 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCC--HHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHH
Confidence 78999999999999999998663 45777887775 8999999999999988 78888899998 4466665
Q ss_pred HH
Q 029545 183 TM 184 (191)
Q Consensus 183 ~i 184 (191)
.+
T Consensus 72 ~~ 73 (75)
T PHA02125 72 KL 73 (75)
T ss_pred Hh
Confidence 44
No 72
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.57 E-value=3.4e-14 Score=101.52 Aligned_cols=102 Identities=12% Similarity=0.136 Sum_probs=87.0
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHH-H--HHHHhhCC-CcEEEEEECCCcchHHHHHhcCCCcccEEEEE
Q 029545 88 EEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPV-I--GELSAKHP-HVTTYKIDIDQKGLESTLSKLNISAVPTFLFF 163 (191)
Q Consensus 88 ~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~-~--~~la~~~~-~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~ 163 (191)
.+|+++++.+++++|+++|+|+++||++|+.+... | .++.+.+. +..++.+|++..+..+++..|++.++|+++++
T Consensus 4 gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i 83 (114)
T cd02958 4 GSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAII 83 (114)
T ss_pred CCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEE
Confidence 46888888899999999999999999999999764 3 44544443 47888899987667899999999999999999
Q ss_pred e--CCeEEEEEeCC-CHHHHHHHHHHHhc
Q 029545 164 Q--HGEKVAEIVGA-DVSRLKTTMEQLYK 189 (191)
Q Consensus 164 ~--~G~~~~~~~G~-~~~~l~~~i~~~~~ 189 (191)
+ +|+.+.++.|. ++++|...|++...
T Consensus 84 ~~~~g~~l~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 84 DPRTGEVLKVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred eCccCcEeEEEcCCCCHHHHHHHHHHHHh
Confidence 5 69999999999 99999999988764
No 73
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.57 E-value=2.6e-14 Score=110.63 Aligned_cols=89 Identities=16% Similarity=0.319 Sum_probs=73.2
Q ss_pred CCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcc--h-------------------HHHHHhcCCCccc
Q 029545 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG--L-------------------ESTLSKLNISAVP 158 (191)
Q Consensus 100 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~--~-------------------~~l~~~~~I~~~P 158 (191)
.+++++|+||++||++|+++.|.++++.++ ++.++.|+.+.+. . ..+...|+|.++|
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P 144 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP 144 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCC
Confidence 478999999999999999999999999763 6888888875431 0 1345678999999
Q ss_pred EEEEE-eCCeEEEEEeCC-CHHHHHHHHHHHhcC
Q 029545 159 TFLFF-QHGEKVAEIVGA-DVSRLKTTMEQLYKK 190 (191)
Q Consensus 159 t~~~~-~~G~~~~~~~G~-~~~~l~~~i~~~~~~ 190 (191)
+.+++ ++|+.+..+.|. +.++++++|+.++++
T Consensus 145 ~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~ 178 (185)
T PRK15412 145 ETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEK 178 (185)
T ss_pred eEEEECCCceEEEEEecCCCHHHHHHHHHHHHHH
Confidence 77777 499999999998 899999999888753
No 74
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.56 E-value=3.4e-14 Score=106.76 Aligned_cols=87 Identities=20% Similarity=0.394 Sum_probs=68.2
Q ss_pred CCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcc----------hHHHH-Hhc---CCCcccEEEEEe-C
Q 029545 101 SLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG----------LESTL-SKL---NISAVPTFLFFQ-H 165 (191)
Q Consensus 101 ~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~----------~~~l~-~~~---~I~~~Pt~~~~~-~ 165 (191)
++..+|+|||+||++|+++.|.++++++++ ++.++.|++|... ..+.. ..| ++.++||+++++ +
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~-~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~ 128 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQF-GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVN 128 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHc-CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCC
Confidence 457799999999999999999999999998 5677777777531 12333 345 889999999996 5
Q ss_pred CeE-EEEEeCC-CHHHHHHHHHHHh
Q 029545 166 GEK-VAEIVGA-DVSRLKTTMEQLY 188 (191)
Q Consensus 166 G~~-~~~~~G~-~~~~l~~~i~~~~ 188 (191)
|+. .....|. +.+++++.|++++
T Consensus 129 G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 129 TRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred CCEEEEEeecccCHHHHHHHHHHhC
Confidence 664 5567888 9999999988764
No 75
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.56 E-value=1.2e-14 Score=117.60 Aligned_cols=96 Identities=30% Similarity=0.489 Sum_probs=84.3
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhh----CCC--cEEEEEECCCcchHHHHHhcCCCcccEEE
Q 029545 88 EEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAK----HPH--VTTYKIDIDQKGLESTLSKLNISAVPTFL 161 (191)
Q Consensus 88 ~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~----~~~--v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~ 161 (191)
++++..+ ++...|+|.|||+||+.++.+.|.+++.++. +|+ +.++.|||+++ .+++.+|.|..+||+.
T Consensus 4 ~N~~~il----~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e--~~ia~ky~I~KyPTlK 77 (375)
T KOG0912|consen 4 ENIDSIL----DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE--DDIADKYHINKYPTLK 77 (375)
T ss_pred ccHHHhh----ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh--hHHhhhhccccCceee
Confidence 5566665 4577999999999999999999999887764 563 99999999998 8999999999999999
Q ss_pred EEeCCeEEE-EEeCC-CHHHHHHHHHHHhc
Q 029545 162 FFQHGEKVA-EIVGA-DVSRLKTTMEQLYK 189 (191)
Q Consensus 162 ~~~~G~~~~-~~~G~-~~~~l~~~i~~~~~ 189 (191)
+|.+|.... +|.|. +.+.|.++|++.+.
T Consensus 78 vfrnG~~~~rEYRg~RsVeaL~efi~kq~s 107 (375)
T KOG0912|consen 78 VFRNGEMMKREYRGQRSVEALIEFIEKQLS 107 (375)
T ss_pred eeeccchhhhhhccchhHHHHHHHHHHHhc
Confidence 999999887 67787 99999999998764
No 76
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.55 E-value=3.8e-14 Score=102.88 Aligned_cols=92 Identities=14% Similarity=0.164 Sum_probs=68.0
Q ss_pred HhhhhcCCCcEEEEEEcCCChhhcchhHHH---HHHHhhC-CCcEEEEEECCCcchHHHHH--------hcCCCcccEEE
Q 029545 94 LGKVKDDSLPAIFYFTAAWCGPCKFIWPVI---GELSAKH-PHVTTYKIDIDQKGLESTLS--------KLNISAVPTFL 161 (191)
Q Consensus 94 l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~---~~la~~~-~~v~~~~vd~d~~~~~~l~~--------~~~I~~~Pt~~ 161 (191)
++.+++++|+++|+|+|+||++|+.|.+.. .++++.. .++.++++|.++. +++.+ .|++.++||++
T Consensus 8 l~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~--~~~~~~~~~~~~~~~~~~G~Pt~v 85 (124)
T cd02955 8 FEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREER--PDVDKIYMNAAQAMTGQGGWPLNV 85 (124)
T ss_pred HHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcC--cHHHHHHHHHHHHhcCCCCCCEEE
Confidence 344557899999999999999999998743 3566553 4688999999875 45543 36899999999
Q ss_pred EEe-CCeEEEEEeCC------CHHHHHHHHHHH
Q 029545 162 FFQ-HGEKVAEIVGA------DVSRLKTTMEQL 187 (191)
Q Consensus 162 ~~~-~G~~~~~~~G~------~~~~l~~~i~~~ 187 (191)
|++ +|+.+....+. +...+.++++++
T Consensus 86 fl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (124)
T cd02955 86 FLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKI 118 (124)
T ss_pred EECCCCCEEeeeeecCCCCcCCCcCHHHHHHHH
Confidence 995 89988765544 233566666654
No 77
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.54 E-value=5.3e-14 Score=93.58 Aligned_cols=71 Identities=15% Similarity=0.254 Sum_probs=58.4
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCC-cEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCeEEEEEeCC--CHHHHH
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGA--DVSRLK 181 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~-v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~--~~~~l~ 181 (191)
.|.||++||++|+.+.|.+++++++++. +.++.|| . .+.+.+|++.++||+++ ||+.+ +.|. +.++|.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~--~---~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~ 72 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT--D---MNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIK 72 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC--C---HHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHH
Confidence 3789999999999999999999999865 7776666 2 34478899999999998 89877 6674 557777
Q ss_pred HHH
Q 029545 182 TTM 184 (191)
Q Consensus 182 ~~i 184 (191)
+++
T Consensus 73 ~~l 75 (76)
T TIGR00412 73 EIL 75 (76)
T ss_pred HHh
Confidence 765
No 78
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.54 E-value=9.9e-14 Score=106.20 Aligned_cols=89 Identities=17% Similarity=0.328 Sum_probs=73.2
Q ss_pred CCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcc---------------------hHHHHHhcCCCccc
Q 029545 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG---------------------LESTLSKLNISAVP 158 (191)
Q Consensus 100 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~---------------------~~~l~~~~~I~~~P 158 (191)
.+++++|+||++||++|+.+.|.++++.++ ++.++.|+.+... ...+.+.|++.++|
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P 139 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAP 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCC
Confidence 478999999999999999999999998764 5777778764321 12456788999999
Q ss_pred EEEEE-eCCeEEEEEeCC-CHHHHHHHHHHHhcC
Q 029545 159 TFLFF-QHGEKVAEIVGA-DVSRLKTTMEQLYKK 190 (191)
Q Consensus 159 t~~~~-~~G~~~~~~~G~-~~~~l~~~i~~~~~~ 190 (191)
+.+++ ++|+.+..+.|. +.+++++++++++.+
T Consensus 140 ~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~~ 173 (173)
T TIGR00385 140 ETFLVDGNGVILYRHAGPLNNEVWTEGFLPAMEK 173 (173)
T ss_pred eEEEEcCCceEEEEEeccCCHHHHHHHHHHHhhC
Confidence 76666 599999999998 999999999998764
No 79
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.53 E-value=2.1e-13 Score=111.42 Aligned_cols=89 Identities=13% Similarity=0.263 Sum_probs=73.5
Q ss_pred CCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcc---------hHHHHHhcCCCcccEEEEEeC-CeEE
Q 029545 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG---------LESTLSKLNISAVPTFLFFQH-GEKV 169 (191)
Q Consensus 100 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~---------~~~l~~~~~I~~~Pt~~~~~~-G~~~ 169 (191)
.++++||+||++||++|+.+.|.++++++++ ++.++.|++|... ...++++|||.++||+++++. |+.+
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y-g~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v 243 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRY-GIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQF 243 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHc-CcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEE
Confidence 4789999999999999999999999999998 5777778877632 257889999999999999985 6655
Q ss_pred EE-EeCC-CHHHHHHHHHHHhc
Q 029545 170 AE-IVGA-DVSRLKTTMEQLYK 189 (191)
Q Consensus 170 ~~-~~G~-~~~~l~~~i~~~~~ 189 (191)
.. ..|. +.++|.+.+.....
T Consensus 244 ~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 244 TPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEEeCCCCHHHHHHHHHHHhc
Confidence 44 4587 99999998877653
No 80
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=4.7e-14 Score=120.60 Aligned_cols=89 Identities=26% Similarity=0.458 Sum_probs=79.7
Q ss_pred cCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC-cEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCeEEEEEeCC-C
Q 029545 99 DDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGA-D 176 (191)
Q Consensus 99 ~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~-v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~-~ 176 (191)
..+++++|+||+|||++|+.+.|.|.++++.+.+ +.++.|||+.+ .++|++|+|+++||+.+|.+|.....+.|. +
T Consensus 45 ~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~--~~~~~~y~i~gfPtl~~f~~~~~~~~~~~~~~ 122 (383)
T KOG0191|consen 45 KDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEH--KDLCEKYGIQGFPTLKVFRPGKKPIDYSGPRN 122 (383)
T ss_pred ccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhh--HHHHHhcCCccCcEEEEEcCCCceeeccCccc
Confidence 4678999999999999999999999999999988 89999999998 999999999999999999988556666676 8
Q ss_pred HHHHHHHHHHHhc
Q 029545 177 VSRLKTTMEQLYK 189 (191)
Q Consensus 177 ~~~l~~~i~~~~~ 189 (191)
.+.+.+++...+.
T Consensus 123 ~~~~~~~~~~~~~ 135 (383)
T KOG0191|consen 123 AESLAEFLIKELE 135 (383)
T ss_pred HHHHHHHHHHhhc
Confidence 8888888877654
No 81
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.51 E-value=1.4e-13 Score=120.83 Aligned_cols=87 Identities=15% Similarity=0.275 Sum_probs=72.9
Q ss_pred CCCcEEEEEEcCCChhhcchhHHHHHHHhhCC--CcEEEEEECC--------------------------CcchHHHHHh
Q 029545 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDID--------------------------QKGLESTLSK 151 (191)
Q Consensus 100 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~--~v~~~~vd~d--------------------------~~~~~~l~~~ 151 (191)
.++++||+|||+||++|+.+.|.+++++++++ ++.++.|..+ .+....+++.
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~ 134 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQS 134 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHH
Confidence 57899999999999999999999999999886 4777666431 0112578899
Q ss_pred cCCCcccEEEEE-eCCeEEEEEeCC-CHHHHHHHHHH
Q 029545 152 LNISAVPTFLFF-QHGEKVAEIVGA-DVSRLKTTMEQ 186 (191)
Q Consensus 152 ~~I~~~Pt~~~~-~~G~~~~~~~G~-~~~~l~~~i~~ 186 (191)
|+|.++||++++ ++|+++..+.|. +.++|.++|+.
T Consensus 135 fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 135 LNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred cCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 999999999766 699999999998 99999999884
No 82
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.48 E-value=3e-13 Score=87.39 Aligned_cols=62 Identities=18% Similarity=0.312 Sum_probs=55.4
Q ss_pred EEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCeEE
Q 029545 104 AIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKV 169 (191)
Q Consensus 104 vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~~~ 169 (191)
-++.|+++||++|+.+.+.+++++..++++.+..+|++++ +++++++++.++||+++ +|+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~--~~l~~~~~i~~vPti~i--~~~~~ 63 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEF--PDLADEYGVMSVPAIVI--NGKVE 63 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccC--HhHHHHcCCcccCEEEE--CCEEE
Confidence 3788999999999999999999998888899999999987 78999999999999876 66544
No 83
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.47 E-value=2.8e-13 Score=98.19 Aligned_cols=80 Identities=23% Similarity=0.379 Sum_probs=64.5
Q ss_pred CCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCc---------------------chHHHHHhcCCCccc
Q 029545 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK---------------------GLESTLSKLNISAVP 158 (191)
Q Consensus 100 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~---------------------~~~~l~~~~~I~~~P 158 (191)
.+++++|+||++||++|+.+.|.++++.+++ ++.++.|+.+.. ....+++.|++.++|
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P 102 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG-RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVP 102 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCC
Confidence 3789999999999999999999999998887 477777774321 124678889999999
Q ss_pred EEEEE-eCCeEEEEEeCC-CHHHH
Q 029545 159 TFLFF-QHGEKVAEIVGA-DVSRL 180 (191)
Q Consensus 159 t~~~~-~~G~~~~~~~G~-~~~~l 180 (191)
+.+++ ++|+.+.++.|. +.+.|
T Consensus 103 ~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 103 ETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred eEEEECCCceEEEEEeccCChHhc
Confidence 76666 599999999998 66544
No 84
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.47 E-value=2.6e-13 Score=101.08 Aligned_cols=72 Identities=14% Similarity=0.375 Sum_probs=58.6
Q ss_pred CCCcEEEEEEcCCChhhcchhHHHHHHHhhC---------CCcEEEEEECCCcch-----------------------HH
Q 029545 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKH---------PHVTTYKIDIDQKGL-----------------------ES 147 (191)
Q Consensus 100 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~---------~~v~~~~vd~d~~~~-----------------------~~ 147 (191)
.+++++|+|||+||++|+++.|.+.++.+++ +++.++.|+.|.++. ..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 4789999999999999999999999876543 248889898775310 15
Q ss_pred HHHhcCCCcccEEEEEe-CCeEEEE
Q 029545 148 TLSKLNISAVPTFLFFQ-HGEKVAE 171 (191)
Q Consensus 148 l~~~~~I~~~Pt~~~~~-~G~~~~~ 171 (191)
++++|+|.++||+++++ +|+.+.+
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEee
Confidence 77899999999999996 8887754
No 85
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=2.6e-14 Score=123.92 Aligned_cols=105 Identities=16% Similarity=0.354 Sum_probs=81.6
Q ss_pred CCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC----cEEEEEECCCcchHHHHHhcCC
Q 029545 79 SNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH----VTTYKIDIDQKGLESTLSKLNI 154 (191)
Q Consensus 79 ~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~----v~~~~vd~d~~~~~~l~~~~~I 154 (191)
.++++ .+.++|+..+. .+.+..+|.||++|||+|++++|.|+++++...+ +.++.|||-.+.+..+|++|+|
T Consensus 39 D~ii~-Ld~~tf~~~v~---~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V 114 (606)
T KOG1731|consen 39 DPIIE-LDVDTFNAAVF---GSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSV 114 (606)
T ss_pred CCeEE-eehhhhHHHhc---ccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCC
Confidence 44444 47899999875 3557899999999999999999999999997653 8999999999888999999999
Q ss_pred CcccEEEEEeCCeEE----EEEeCC-CHHHHHHHHHHH
Q 029545 155 SAVPTFLFFQHGEKV----AEIVGA-DVSRLKTTMEQL 187 (191)
Q Consensus 155 ~~~Pt~~~~~~G~~~----~~~~G~-~~~~l~~~i~~~ 187 (191)
.++||+.+|..+-.- ..+.|. .+.++.+.+.+.
T Consensus 115 ~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~ 152 (606)
T KOG1731|consen 115 SGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRT 152 (606)
T ss_pred CCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHH
Confidence 999999999633211 233343 355555555444
No 86
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.46 E-value=3.1e-13 Score=93.05 Aligned_cols=67 Identities=31% Similarity=0.635 Sum_probs=55.7
Q ss_pred CCcEEEEEEcCCChhhcchhHHHHHHHhhCC---CcEEEEEECCCcc-----------------------hHHHHHhcCC
Q 029545 101 SLPAIFYFTAAWCGPCKFIWPVIGELSAKHP---HVTTYKIDIDQKG-----------------------LESTLSKLNI 154 (191)
Q Consensus 101 ~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~---~v~~~~vd~d~~~-----------------------~~~l~~~~~I 154 (191)
+|+++|+|||+||++|+...|.+.++.++++ ++.++.|++|++. ...+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 5799999999999999999999999999998 4999999988642 1267889999
Q ss_pred CcccEEEEEe-CCe
Q 029545 155 SAVPTFLFFQ-HGE 167 (191)
Q Consensus 155 ~~~Pt~~~~~-~G~ 167 (191)
.++|++++++ +|+
T Consensus 81 ~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 81 NGIPTLVLLDPDGK 94 (95)
T ss_dssp TSSSEEEEEETTSB
T ss_pred CcCCEEEEECCCCC
Confidence 9999999996 565
No 87
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.46 E-value=7.3e-13 Score=100.74 Aligned_cols=88 Identities=22% Similarity=0.471 Sum_probs=75.6
Q ss_pred CCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC--cEEEEEECCCcc--------------------hHHHHHhcCCCcc
Q 029545 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH--VTTYKIDIDQKG--------------------LESTLSKLNISAV 157 (191)
Q Consensus 100 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~--v~~~~vd~d~~~--------------------~~~l~~~~~I~~~ 157 (191)
.+++++|+||++||++|+...+.+.++.+++++ +.++.|++|... ...+++.|+|.++
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 367999999999999999999999999998864 889999887531 2477899999999
Q ss_pred cEEEEEe-CCeEEEEEeCC-CHHHHHHHHHHH
Q 029545 158 PTFLFFQ-HGEKVAEIVGA-DVSRLKTTMEQL 187 (191)
Q Consensus 158 Pt~~~~~-~G~~~~~~~G~-~~~~l~~~i~~~ 187 (191)
|++++++ +|+.+..+.|. +.+++.++++++
T Consensus 140 P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 140 PTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 9988885 88888888887 889999998865
No 88
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.45 E-value=1.3e-12 Score=100.23 Aligned_cols=85 Identities=18% Similarity=0.344 Sum_probs=69.9
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcc-----------hHHHHHhcCC--CcccEEEEEe-CCeEE-
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG-----------LESTLSKLNI--SAVPTFLFFQ-HGEKV- 169 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~-----------~~~l~~~~~I--~~~Pt~~~~~-~G~~~- 169 (191)
+|.||++||++|+++.|.++++++++ ++.++.|++|... ...+.+.|++ .++||.++++ +|+.+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~-g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY-GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc-CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 77899999999999999999999998 5788778877441 1236678885 6999999884 88875
Q ss_pred EEEeCC-CHHHHHHHHHHHhcC
Q 029545 170 AEIVGA-DVSRLKTTMEQLYKK 190 (191)
Q Consensus 170 ~~~~G~-~~~~l~~~i~~~~~~ 190 (191)
..+.|. +.++|++.|+++++.
T Consensus 152 ~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 152 PLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred EEEECCCCHHHHHHHHHHHHhh
Confidence 468898 999999999988753
No 89
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.45 E-value=3.8e-13 Score=98.06 Aligned_cols=72 Identities=25% Similarity=0.509 Sum_probs=59.0
Q ss_pred CCCcEEEEEEcCCChhhcchhHHHHHHHhhCC----CcEEEEEECCCcc----------------------hHHHHHhcC
Q 029545 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP----HVTTYKIDIDQKG----------------------LESTLSKLN 153 (191)
Q Consensus 100 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~----~v~~~~vd~d~~~----------------------~~~l~~~~~ 153 (191)
.++++||+||++||++|+.+.|.+.++.+++. ++.++.|++|... ...+++.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 36799999999999999999999988877653 5778888887542 135778999
Q ss_pred CCcccEEEEEe-CCeEEEE
Q 029545 154 ISAVPTFLFFQ-HGEKVAE 171 (191)
Q Consensus 154 I~~~Pt~~~~~-~G~~~~~ 171 (191)
|.++|++++++ +|+.+.+
T Consensus 97 v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 97 IEGIPTLIILDADGEVVTT 115 (131)
T ss_pred CCCCCEEEEECCCCCEEcc
Confidence 99999999996 8887654
No 90
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.44 E-value=3.6e-12 Score=92.95 Aligned_cols=97 Identities=18% Similarity=0.204 Sum_probs=82.0
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEcC--CChhhcchhHHHHHHHhhCC-C-cEEEEEECCCcchHHHHHhcCCCcccEEEEE
Q 029545 88 EEFNSSLGKVKDDSLPAIFYFTAA--WCGPCKFIWPVIGELSAKHP-H-VTTYKIDIDQKGLESTLSKLNISAVPTFLFF 163 (191)
Q Consensus 88 ~~f~~~l~~~~~~~k~vlV~F~a~--wC~~C~~~~p~~~~la~~~~-~-v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~ 163 (191)
.+++..+.. ....+|.|-.+ -++.+-...-.+++++++|+ + +++++||+|.+ ++++.+|||.++||+++|
T Consensus 25 ~~~~~~~~~----~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~--~~LA~~fgV~siPTLl~F 98 (132)
T PRK11509 25 SRLDDWLTQ----APDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQS--EAIGDRFGVFRFPATLVF 98 (132)
T ss_pred ccHHHHHhC----CCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCC--HHHHHHcCCccCCEEEEE
Confidence 566666532 33455555443 57888888999999999998 3 89999999998 999999999999999999
Q ss_pred eCCeEEEEEeCC-CHHHHHHHHHHHhcC
Q 029545 164 QHGEKVAEIVGA-DVSRLKTTMEQLYKK 190 (191)
Q Consensus 164 ~~G~~~~~~~G~-~~~~l~~~i~~~~~~ 190 (191)
++|+.+..+.|. +.+++.++|++++..
T Consensus 99 kdGk~v~~i~G~~~k~~l~~~I~~~L~~ 126 (132)
T PRK11509 99 TGGNYRGVLNGIHPWAELINLMRGLVEP 126 (132)
T ss_pred ECCEEEEEEeCcCCHHHHHHHHHHHhcC
Confidence 999999999998 999999999998864
No 91
>smart00594 UAS UAS domain.
Probab=99.43 E-value=1.2e-12 Score=94.74 Aligned_cols=97 Identities=9% Similarity=0.117 Sum_probs=79.5
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHH---HHHHhhCC-CcEEEEEECCCcchHHHHHhcCCCcccEEEEE
Q 029545 88 EEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVI---GELSAKHP-HVTTYKIDIDQKGLESTLSKLNISAVPTFLFF 163 (191)
Q Consensus 88 ~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~---~~la~~~~-~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~ 163 (191)
.+|++++..++.++|+++|+|+++||++|+.+...+ .++.+... ++.+..+|++..+..+++++|+++++|+++++
T Consensus 14 gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l 93 (122)
T smart00594 14 GSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIV 93 (122)
T ss_pred CCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEE
Confidence 578888888888999999999999999999987754 34444333 48888899998877899999999999999999
Q ss_pred e-CC-----eEEEEEeCC-CHHHHHHHH
Q 029545 164 Q-HG-----EKVAEIVGA-DVSRLKTTM 184 (191)
Q Consensus 164 ~-~G-----~~~~~~~G~-~~~~l~~~i 184 (191)
. +| +.+.++.|. ++++|...+
T Consensus 94 ~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 94 DPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred ecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 5 54 356788888 889888765
No 92
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.42 E-value=6.9e-13 Score=116.07 Aligned_cols=104 Identities=22% Similarity=0.419 Sum_probs=88.5
Q ss_pred EEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHH---HHHHhhCCCcEEEEEECCCcc--hHHHHHhcCCCc
Q 029545 82 LVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVI---GELSAKHPHVTTYKIDIDQKG--LESTLSKLNISA 156 (191)
Q Consensus 82 ~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~---~~la~~~~~v~~~~vd~d~~~--~~~l~~~~~I~~ 156 (191)
..+.+.+++++.+++ +.+|||+|+|||+||-.||.+++.. .+...+.+|++..++|+++++ ..++.++|++-+
T Consensus 457 q~~s~~~~L~~~la~--~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G 534 (569)
T COG4232 457 QPISPLAELDQALAE--AKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFG 534 (569)
T ss_pred hccCCHHHHHHHHHh--CCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCC
Confidence 556666799999876 3457999999999999999999876 456667789999999999863 457889999999
Q ss_pred ccEEEEEe-CCeEEEEEeCC-CHHHHHHHHHHH
Q 029545 157 VPTFLFFQ-HGEKVAEIVGA-DVSRLKTTMEQL 187 (191)
Q Consensus 157 ~Pt~~~~~-~G~~~~~~~G~-~~~~l~~~i~~~ 187 (191)
+|++++|. +|++.....|. +.+.+.+++++.
T Consensus 535 ~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 535 VPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 99999997 88887778898 999999999875
No 93
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.42 E-value=1.5e-12 Score=93.59 Aligned_cols=81 Identities=21% Similarity=0.431 Sum_probs=63.7
Q ss_pred CCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCc---------------------chHHHHHhcCCCccc
Q 029545 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK---------------------GLESTLSKLNISAVP 158 (191)
Q Consensus 100 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~---------------------~~~~l~~~~~I~~~P 158 (191)
.+++++|+||++||++|+.+.|.+.++.+++ .++.|..+.+ ...+++++|+|.++|
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P 95 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADY---PVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTP 95 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhC---CEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCccc
Confidence 3589999999999999999999999998774 2333332221 125789999999999
Q ss_pred EEEEEeCCeEEEEEeCC-CHHHHHHH
Q 029545 159 TFLFFQHGEKVAEIVGA-DVSRLKTT 183 (191)
Q Consensus 159 t~~~~~~G~~~~~~~G~-~~~~l~~~ 183 (191)
+++++++|+......|. +.+.|.+.
T Consensus 96 ~~~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 96 AIVIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred EEEEEcCCCeEEEEeccCCHHHHHhh
Confidence 99999866677888898 88888664
No 94
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.42 E-value=7.8e-13 Score=96.74 Aligned_cols=72 Identities=22% Similarity=0.502 Sum_probs=58.2
Q ss_pred CCCcEEEEEEcCCChhhcchhHHHHHHHhhCC----CcEEEEEECCCcc-----------------------hHHHHHhc
Q 029545 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP----HVTTYKIDIDQKG-----------------------LESTLSKL 152 (191)
Q Consensus 100 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~----~v~~~~vd~d~~~-----------------------~~~l~~~~ 152 (191)
.+++++|+||++||++|+.+.|.++++.+++. ++.++.|++|... ...+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 47899999999999999999999998887654 4778888877641 12456779
Q ss_pred CCCcccEEEEEe-CCeEEEE
Q 029545 153 NISAVPTFLFFQ-HGEKVAE 171 (191)
Q Consensus 153 ~I~~~Pt~~~~~-~G~~~~~ 171 (191)
+|.++||+++++ +|+.+.+
T Consensus 96 ~v~~iPt~~lid~~G~iv~~ 115 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVVTT 115 (132)
T ss_pred CCCCCCEEEEECCCCCEEch
Confidence 999999999996 7776644
No 95
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.40 E-value=1.8e-12 Score=122.90 Aligned_cols=90 Identities=22% Similarity=0.323 Sum_probs=75.7
Q ss_pred CCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC--cEEEEEEC---CCc----------------------chHHHHHhc
Q 029545 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH--VTTYKIDI---DQK----------------------GLESTLSKL 152 (191)
Q Consensus 100 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~--v~~~~vd~---d~~----------------------~~~~l~~~~ 152 (191)
.++++||+|||+||++|+.+.|.++++.++|++ +.++.|.. |.+ ....+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 478999999999999999999999999999975 77777742 221 123577899
Q ss_pred CCCcccEEEEE-eCCeEEEEEeCC-CHHHHHHHHHHHhc
Q 029545 153 NISAVPTFLFF-QHGEKVAEIVGA-DVSRLKTTMEQLYK 189 (191)
Q Consensus 153 ~I~~~Pt~~~~-~~G~~~~~~~G~-~~~~l~~~i~~~~~ 189 (191)
+|.++||++++ ++|+.+.++.|. ..++|.++|++.+.
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 99999999999 599999999998 88999999988753
No 96
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.39 E-value=4e-12 Score=87.07 Aligned_cols=74 Identities=15% Similarity=0.267 Sum_probs=63.7
Q ss_pred CCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCeEEEEEeCC-CHHH
Q 029545 101 SLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGA-DVSR 179 (191)
Q Consensus 101 ~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~-~~~~ 179 (191)
+..-+..|+++||++|....+.+++++..++++.+..+|.+.. ++++.+|+|.++||+++ +|+.+.. |. +.++
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~--~e~a~~~~V~~vPt~vi--dG~~~~~--G~~~~~e 85 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALF--QDEVEERGIMSVPAIFL--NGELFGF--GRMTLEE 85 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhC--HHHHHHcCCccCCEEEE--CCEEEEe--CCCCHHH
Confidence 3456888999999999999999999999999999999999987 89999999999999975 8887663 75 5444
Q ss_pred H
Q 029545 180 L 180 (191)
Q Consensus 180 l 180 (191)
+
T Consensus 86 ~ 86 (89)
T cd03026 86 I 86 (89)
T ss_pred H
Confidence 4
No 97
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.38 E-value=1.1e-12 Score=95.49 Aligned_cols=85 Identities=15% Similarity=0.209 Sum_probs=62.4
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHH---HHHHhhCC-CcEEEEEECCCcchHHHHHhcCCCcccEEEEE
Q 029545 88 EEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVI---GELSAKHP-HVTTYKIDIDQKGLESTLSKLNISAVPTFLFF 163 (191)
Q Consensus 88 ~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~---~~la~~~~-~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~ 163 (191)
.+|++.++.+++++|+++|+|+++||++|+.+...+ .++.+... ++..+.++.+..+ ... ...+ .++||++|+
T Consensus 10 ~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td-~~~-~~~g-~~vPtivFl 86 (130)
T cd02960 10 QTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTD-KNL-SPDG-QYVPRIMFV 86 (130)
T ss_pred hhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCC-CCc-CccC-cccCeEEEE
Confidence 478999999999999999999999999999998865 34444332 4566667765331 111 1233 689999999
Q ss_pred e-CCeEEEEEeCC
Q 029545 164 Q-HGEKVAEIVGA 175 (191)
Q Consensus 164 ~-~G~~~~~~~G~ 175 (191)
+ +|+++.++.|.
T Consensus 87 d~~g~vi~~i~Gy 99 (130)
T cd02960 87 DPSLTVRADITGR 99 (130)
T ss_pred CCCCCCccccccc
Confidence 5 88888877775
No 98
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.34 E-value=8.4e-12 Score=87.16 Aligned_cols=74 Identities=22% Similarity=0.425 Sum_probs=64.6
Q ss_pred CCcEEEEEEcCCChhhcchhHHHHHHHhhC--CCcEEEEEECCCc---------------------chHHHHHhcCCCcc
Q 029545 101 SLPAIFYFTAAWCGPCKFIWPVIGELSAKH--PHVTTYKIDIDQK---------------------GLESTLSKLNISAV 157 (191)
Q Consensus 101 ~k~vlV~F~a~wC~~C~~~~p~~~~la~~~--~~v~~~~vd~d~~---------------------~~~~l~~~~~I~~~ 157 (191)
+++++|.||++||++|+...+.+.++.+++ +++.++.|+++.+ ....+.+.|++.++
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGL 98 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCcc
Confidence 689999999999999999999999999998 5699999999873 11578899999999
Q ss_pred cEEEEEe-CCeEEEEEeC
Q 029545 158 PTFLFFQ-HGEKVAEIVG 174 (191)
Q Consensus 158 Pt~~~~~-~G~~~~~~~G 174 (191)
|++++++ +|+.+..+.|
T Consensus 99 P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 99 PTTFLIDRDGRIRARHVG 116 (116)
T ss_pred ceEEEECCCCcEEEEecC
Confidence 9999995 8888887765
No 99
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.30 E-value=1.6e-11 Score=87.09 Aligned_cols=71 Identities=17% Similarity=0.323 Sum_probs=53.0
Q ss_pred CCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC-cEEEEEE-CCCcch-----------------HHHHHhcCCCcccEE
Q 029545 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKID-IDQKGL-----------------ESTLSKLNISAVPTF 160 (191)
Q Consensus 100 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~-v~~~~vd-~d~~~~-----------------~~l~~~~~I~~~Pt~ 160 (191)
++++++|+||++||++|+.+.|.++++.+++.+ +.++.+. .+.++. .++.+.|++.++|+.
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~ 99 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA 99 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence 378999999999999999999999999888754 6666552 111111 255667888889988
Q ss_pred EEEe-CCeEEE
Q 029545 161 LFFQ-HGEKVA 170 (191)
Q Consensus 161 ~~~~-~G~~~~ 170 (191)
++++ +|+.+.
T Consensus 100 ~vid~~G~v~~ 110 (114)
T cd02967 100 VLLDEAGVIAA 110 (114)
T ss_pred EEECCCCeEEe
Confidence 8886 676654
No 100
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.30 E-value=5.8e-12 Score=84.79 Aligned_cols=74 Identities=24% Similarity=0.603 Sum_probs=57.1
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHH---HHHHh-hCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEE
Q 029545 88 EEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVI---GELSA-KHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFF 163 (191)
Q Consensus 88 ~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~---~~la~-~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~ 163 (191)
.+++++++.+++++|+++|+|+++||++|+.+...+ .++.+ ..+++.++.||.+..+ ... .+...++|+++|+
T Consensus 4 ~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~-~~~--~~~~~~~P~~~~l 80 (82)
T PF13899_consen 4 SDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDED-PNA--QFDRQGYPTFFFL 80 (82)
T ss_dssp SSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHH-HHH--HHHHCSSSEEEEE
T ss_pred hhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCC-hhH--HhCCccCCEEEEe
Confidence 467888888999999999999999999999998877 44444 2246899999998763 222 2222679999998
Q ss_pred e
Q 029545 164 Q 164 (191)
Q Consensus 164 ~ 164 (191)
+
T Consensus 81 d 81 (82)
T PF13899_consen 81 D 81 (82)
T ss_dssp E
T ss_pred C
Confidence 6
No 101
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.29 E-value=2.7e-11 Score=87.79 Aligned_cols=76 Identities=13% Similarity=0.180 Sum_probs=62.0
Q ss_pred CCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC--cEEEEEECCC-----c--c------------------hHHHHHhc
Q 029545 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH--VTTYKIDIDQ-----K--G------------------LESTLSKL 152 (191)
Q Consensus 100 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~--v~~~~vd~d~-----~--~------------------~~~l~~~~ 152 (191)
.++++||+||++||++|....|.++++.+++++ +.++.|+.+. . + ...+.+.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 368999999999999999999999999999974 7888886521 0 0 12567789
Q ss_pred CCCcccEEEEEe-CCeEEEEEeCC
Q 029545 153 NISAVPTFLFFQ-HGEKVAEIVGA 175 (191)
Q Consensus 153 ~I~~~Pt~~~~~-~G~~~~~~~G~ 175 (191)
++.++|++++++ +|+.+....|.
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEecC
Confidence 999999999995 89998888774
No 102
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.28 E-value=3.1e-11 Score=96.60 Aligned_cols=90 Identities=11% Similarity=0.138 Sum_probs=70.2
Q ss_pred CCCcEEEEEEcCCChhhcchhHHHHHHHhhCC--CcEEEEEECCC------c---chHHHH-HhcC--------------
Q 029545 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQ------K---GLESTL-SKLN-------------- 153 (191)
Q Consensus 100 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~--~v~~~~vd~d~------~---~~~~l~-~~~~-------------- 153 (191)
.++++||.||++||++|....|.++++.++++ ++.++.|+++. + +..+.+ ++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 36899999999999999999999999999886 48999998742 1 122222 2222
Q ss_pred --------------------CCcccEEEEE-eCCeEEEEEeCC-CHHHHHHHHHHHhc
Q 029545 154 --------------------ISAVPTFLFF-QHGEKVAEIVGA-DVSRLKTTMEQLYK 189 (191)
Q Consensus 154 --------------------I~~~Pt~~~~-~~G~~~~~~~G~-~~~~l~~~i~~~~~ 189 (191)
|...|+.+++ ++|+.+.++.|. ++++|++.|+++++
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 1235877777 599999999998 89999999999875
No 103
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.28 E-value=2.6e-11 Score=94.93 Aligned_cols=91 Identities=16% Similarity=0.151 Sum_probs=69.5
Q ss_pred CCCcEEEEEEcCCChhhcchhHHHHHHHhhCC--CcEEEEEECCC---------cchHHHHHhcCCC-------------
Q 029545 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQ---------KGLESTLSKLNIS------------- 155 (191)
Q Consensus 100 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~--~v~~~~vd~d~---------~~~~~l~~~~~I~------------- 155 (191)
.++++||.|||+||++|+...|.++++.+++. ++.++.|+++. ++....++++++.
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~ 117 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGEN 117 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCc
Confidence 36899999999999999999999999999986 48999998742 1233445554431
Q ss_pred -----------------------ccc---EEEEE-eCCeEEEEEeCC-CHHHHHHHHHHHhcC
Q 029545 156 -----------------------AVP---TFLFF-QHGEKVAEIVGA-DVSRLKTTMEQLYKK 190 (191)
Q Consensus 156 -----------------------~~P---t~~~~-~~G~~~~~~~G~-~~~~l~~~i~~~~~~ 190 (191)
++| +.+++ ++|+.+.++.|. +.+++++.|++++++
T Consensus 118 ~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~ 180 (199)
T PTZ00056 118 THELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLGV 180 (199)
T ss_pred cCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 122 44455 699999999887 888999999988754
No 104
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.26 E-value=4.1e-11 Score=88.75 Aligned_cols=83 Identities=27% Similarity=0.484 Sum_probs=67.0
Q ss_pred CCCcEEEEEEcC-CChhhcchhHHHHHHHhhCC--CcEEEEEECCCcc-------------------hHHHHHhcCCC--
Q 029545 100 DSLPAIFYFTAA-WCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQKG-------------------LESTLSKLNIS-- 155 (191)
Q Consensus 100 ~~k~vlV~F~a~-wC~~C~~~~p~~~~la~~~~--~v~~~~vd~d~~~-------------------~~~l~~~~~I~-- 155 (191)
.+++++|.||++ ||++|+...|.+.++.+.++ ++.++.|..+.+. ...+.+.|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 478999999999 99999999999999988754 4888888866542 12678899998
Q ss_pred -------cccEEEEE-eCCeEEEEEeCC-C--HHHHHH
Q 029545 156 -------AVPTFLFF-QHGEKVAEIVGA-D--VSRLKT 182 (191)
Q Consensus 156 -------~~Pt~~~~-~~G~~~~~~~G~-~--~~~l~~ 182 (191)
++|+++++ ++|+++....|. + ..++++
T Consensus 107 ~~~~~~~~~P~~~lId~~G~V~~~~~g~~~~~~~~~~~ 144 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDKDGKVVYRHVGPDPDEESDLEA 144 (146)
T ss_dssp CCTTTTSSSSEEEEEETTSBEEEEEESSBTTSHHSHHH
T ss_pred cccccCCeecEEEEEECCCEEEEEEeCCCCCCCCChhh
Confidence 99988777 599999999998 4 344444
No 105
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.23 E-value=9.8e-11 Score=90.94 Aligned_cols=87 Identities=16% Similarity=0.276 Sum_probs=63.8
Q ss_pred CCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCc------------------chHHHHHhcCCCcccEEE
Q 029545 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK------------------GLESTLSKLNISAVPTFL 161 (191)
Q Consensus 100 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~------------------~~~~l~~~~~I~~~Pt~~ 161 (191)
.+++++|+||++||++|+.+.|.+.++.+++ ++.++.|..+.. ...++.+.|++.++|+.+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~ 151 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV 151 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence 4789999999999999999999999988765 445555542211 023677899999999887
Q ss_pred EEe-CCeEEEEEeCCCHHHHHHHHHHH
Q 029545 162 FFQ-HGEKVAEIVGADVSRLKTTMEQL 187 (191)
Q Consensus 162 ~~~-~G~~~~~~~G~~~~~l~~~i~~~ 187 (191)
+++ +|+...+......+.++++++.+
T Consensus 152 lID~~G~I~~~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 152 LLDQDGKIRAKGLTNTREHLESLLEAD 178 (189)
T ss_pred EECCCCeEEEccCCCCHHHHHHHHHHH
Confidence 775 78777642222667788887765
No 106
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.21 E-value=1.1e-10 Score=90.01 Aligned_cols=82 Identities=12% Similarity=0.082 Sum_probs=63.8
Q ss_pred CCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEE------EEEECCCcc---------------------------hH
Q 029545 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTT------YKIDIDQKG---------------------------LE 146 (191)
Q Consensus 100 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~------~~vd~d~~~---------------------------~~ 146 (191)
.+|+++|.|||.||++|+...|.+++++++ ++.+ ..||.|+.. ..
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g 135 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA--KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKG 135 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHc--CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcc
Confidence 489999999999999999999999999654 3444 667766521 01
Q ss_pred HHHHhcCCCcccEE-EEE-eCCeEEEEEeCC-CHHHHHHH
Q 029545 147 STLSKLNISAVPTF-LFF-QHGEKVAEIVGA-DVSRLKTT 183 (191)
Q Consensus 147 ~l~~~~~I~~~Pt~-~~~-~~G~~~~~~~G~-~~~~l~~~ 183 (191)
.+...|++.++|+. +++ ++|+.+....|. +.+++++.
T Consensus 136 ~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~ 175 (184)
T TIGR01626 136 AVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTV 175 (184)
T ss_pred hHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHH
Confidence 35678999999866 566 599999999998 77777663
No 107
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2.4e-11 Score=94.29 Aligned_cols=93 Identities=28% Similarity=0.442 Sum_probs=80.9
Q ss_pred CCCCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC--cEEEEEECCCcchHHHHHhcCC
Q 029545 77 GPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH--VTTYKIDIDQKGLESTLSKLNI 154 (191)
Q Consensus 77 ~~~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~--v~~~~vd~d~~~~~~l~~~~~I 154 (191)
++..+....+.+.+++.+. ++....|+|.|||.|.+.|....|.+.+++.+|.. ++|++||+..- ++.+++|+|
T Consensus 122 gpe~ikyf~~~q~~deel~--rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrf--pd~a~kfri 197 (265)
T KOG0914|consen 122 GPETIKYFTNMQLEDEELD--RNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRF--PDVAAKFRI 197 (265)
T ss_pred CchheeeecchhhHHHHhc--cCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccC--cChHHheee
Confidence 5566667777777877774 47889999999999999999999999999999864 99999999996 899999998
Q ss_pred C------cccEEEEEeCCeEEEEEe
Q 029545 155 S------AVPTFLFFQHGEKVAEIV 173 (191)
Q Consensus 155 ~------~~Pt~~~~~~G~~~~~~~ 173 (191)
. ..||+++|++|+++.+..
T Consensus 198 s~s~~srQLPT~ilFq~gkE~~RrP 222 (265)
T KOG0914|consen 198 SLSPGSRQLPTYILFQKGKEVSRRP 222 (265)
T ss_pred ccCcccccCCeEEEEccchhhhcCc
Confidence 6 699999999999987654
No 108
>PLN02412 probable glutathione peroxidase
Probab=99.19 E-value=2e-10 Score=87.44 Aligned_cols=90 Identities=13% Similarity=0.148 Sum_probs=70.2
Q ss_pred CCcEEEEEEcCCChhhcchhHHHHHHHhhCCC--cEEEEEECCC------cchHHH----HHhcC---------------
Q 029545 101 SLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH--VTTYKIDIDQ------KGLEST----LSKLN--------------- 153 (191)
Q Consensus 101 ~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~--v~~~~vd~d~------~~~~~l----~~~~~--------------- 153 (191)
++++||.||++||++|+...|.+.++.++|++ +.++.|+++. +...++ +++++
T Consensus 29 gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~~ 108 (167)
T PLN02412 29 GKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGKN 108 (167)
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCCC
Confidence 68999999999999999999999999999874 8899898752 111111 12211
Q ss_pred -------------------CCcccEEEEE-eCCeEEEEEeCC-CHHHHHHHHHHHhcC
Q 029545 154 -------------------ISAVPTFLFF-QHGEKVAEIVGA-DVSRLKTTMEQLYKK 190 (191)
Q Consensus 154 -------------------I~~~Pt~~~~-~~G~~~~~~~G~-~~~~l~~~i~~~~~~ 190 (191)
|...|+.+++ ++|+.+.++.|. +.+++++.|++++++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~~ 166 (167)
T PLN02412 109 TAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLGQ 166 (167)
T ss_pred CCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence 3345887777 699999999998 899999999998865
No 109
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.16 E-value=2.1e-10 Score=93.36 Aligned_cols=106 Identities=21% Similarity=0.302 Sum_probs=81.3
Q ss_pred CCCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcc
Q 029545 78 PSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAV 157 (191)
Q Consensus 78 ~~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~ 157 (191)
-..+.++.+.++|-+.+... ..+..|||+||-+.++.|..+...|..||.+|+.++|++|..... + +..+|.+..+
T Consensus 124 fG~v~ei~~~e~~l~~ie~~-~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~--~-~~~~f~~~~L 199 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKE-SKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKC--P-ASENFPDKNL 199 (265)
T ss_dssp --SEEE--SHHHHHHHCCTS-STT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGC--C-TTTTS-TTC-
T ss_pred CceEEEccChhhHHHHHhcc-CCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhcc--C-cccCCcccCC
Confidence 45678888889998887643 234578999999999999999999999999999999999998875 2 6788999999
Q ss_pred cEEEEEeCCeEEEEEeCC--------CHHHHHHHHHHH
Q 029545 158 PTFLFFQHGEKVAEIVGA--------DVSRLKTTMEQL 187 (191)
Q Consensus 158 Pt~~~~~~G~~~~~~~G~--------~~~~l~~~i~~~ 187 (191)
||+++|++|..+..++|. ...+|+.+|.++
T Consensus 200 PtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 200 PTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred CEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 999999999999998865 345677776654
No 110
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.16 E-value=2.3e-10 Score=74.26 Aligned_cols=71 Identities=27% Similarity=0.482 Sum_probs=56.8
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcc--hHHHHHhcCCCcccEEEEEeCCeEEEEEeCCCHHHHHH
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG--LESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKT 182 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~--~~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~~~~~l~~ 182 (191)
+..|+++||++|+.+.+.+++ .++.+..+|++.++ ..++.+.+++.++|++++. |+. +.|.+++.|.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~~~~~i~~ 71 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGFDPEKLDQ 71 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeCCHHHHHH
Confidence 568999999999999988865 36888999998752 2346778999999999873 653 67889998888
Q ss_pred HHH
Q 029545 183 TME 185 (191)
Q Consensus 183 ~i~ 185 (191)
+|+
T Consensus 72 ~i~ 74 (74)
T TIGR02196 72 LLE 74 (74)
T ss_pred HhC
Confidence 874
No 111
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=99.14 E-value=1e-09 Score=78.77 Aligned_cols=101 Identities=11% Similarity=0.122 Sum_probs=83.4
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEcC----CChhhcch--hHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEE
Q 029545 88 EEFNSSLGKVKDDSLPAIFYFTAA----WCGPCKFI--WPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFL 161 (191)
Q Consensus 88 ~~f~~~l~~~~~~~k~vlV~F~a~----wC~~C~~~--~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~ 161 (191)
..|++++..++++.|.++|++|++ ||..|+.. .|.+.++.++ ++.++..|++..+...++..+++.++|++.
T Consensus 4 gs~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~ 81 (116)
T cd02991 4 GTYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLA 81 (116)
T ss_pred CcHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEE
Confidence 357788888889999999999999 99999764 3455555443 588999999988778999999999999999
Q ss_pred EEe----CCeEEEEEeCC-CHHHHHHHHHHHhcC
Q 029545 162 FFQ----HGEKVAEIVGA-DVSRLKTTMEQLYKK 190 (191)
Q Consensus 162 ~~~----~G~~~~~~~G~-~~~~l~~~i~~~~~~ 190 (191)
++. +.+.+.++.|. ++++|...|+....+
T Consensus 82 ~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~ 115 (116)
T cd02991 82 MIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDA 115 (116)
T ss_pred EEEecCCceEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 982 34568899999 999999999988754
No 112
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.14 E-value=3.4e-10 Score=84.75 Aligned_cols=83 Identities=16% Similarity=0.197 Sum_probs=61.7
Q ss_pred CCCcEEEEEEcCCChhhcchhHHHHHHHhhCC--CcEEEEEECCC---------cchHHHHHh-cC--------------
Q 029545 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQ---------KGLESTLSK-LN-------------- 153 (191)
Q Consensus 100 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~--~v~~~~vd~d~---------~~~~~l~~~-~~-------------- 153 (191)
.++++||.|||+||+ |....|.++++.+++. ++.++.|+++. ++....+++ ++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~~ 99 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGE 99 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccCC
Confidence 378999999999999 9999999999999986 48888887642 112233332 22
Q ss_pred ---------CCccc-----------EEEEE-eCCeEEEEEeCC-CHHHHHHH
Q 029545 154 ---------ISAVP-----------TFLFF-QHGEKVAEIVGA-DVSRLKTT 183 (191)
Q Consensus 154 ---------I~~~P-----------t~~~~-~~G~~~~~~~G~-~~~~l~~~ 183 (191)
+.++| |.+++ ++|+.+.++.|. +.++|++.
T Consensus 100 ~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 100 NAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred CCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 23456 56666 699999999998 88777654
No 113
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.10 E-value=8.2e-10 Score=82.72 Aligned_cols=89 Identities=16% Similarity=0.202 Sum_probs=66.6
Q ss_pred CCCcEEEEEEcCCChhhcchhHHHHHHHhhCC--CcEEEEEECC--------C-cchHHHHHh-cCC-------------
Q 029545 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDID--------Q-KGLESTLSK-LNI------------- 154 (191)
Q Consensus 100 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~--~v~~~~vd~d--------~-~~~~~l~~~-~~I------------- 154 (191)
.+|++||.|||+||++|+...|.++++.+++. ++.++.|+++ . +.....+++ +++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~ 100 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS 100 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence 36889999999999999999999999999986 4899989862 1 112233322 221
Q ss_pred -------------CcccE----EEEE-eCCeEEEEEeCC-CHHHHHHHHHHHh
Q 029545 155 -------------SAVPT----FLFF-QHGEKVAEIVGA-DVSRLKTTMEQLY 188 (191)
Q Consensus 155 -------------~~~Pt----~~~~-~~G~~~~~~~G~-~~~~l~~~i~~~~ 188 (191)
.++|+ .+++ ++|+.+..+.|. +.++|...|++++
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV 153 (153)
T ss_pred CCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence 13785 4445 699999999998 8999999988764
No 114
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.09 E-value=5.8e-10 Score=77.18 Aligned_cols=85 Identities=26% Similarity=0.597 Sum_probs=70.0
Q ss_pred CCcEEEEEEcCCChhhcchhHHHHHHHhhCCC-cEEEEEECC-CcchHHHHHhcC--CCcccEEEEEeCCeEEEEEeC--
Q 029545 101 SLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDID-QKGLESTLSKLN--ISAVPTFLFFQHGEKVAEIVG-- 174 (191)
Q Consensus 101 ~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~-v~~~~vd~d-~~~~~~l~~~~~--I~~~Pt~~~~~~G~~~~~~~G-- 174 (191)
++++++.||++||++|+.+.|.+.++++++.+ +.+..+|.. .. .++...|+ +..+|+++++.+|+.+....+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 109 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDEN--PDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGK 109 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCC--hHHHHHHhhhhccCCeEEEEeCcchhhhhhhcc
Confidence 67999999999999999999999999999985 999999996 44 78889999 999999999988887665555
Q ss_pred C-CHHHHHHHHHHH
Q 029545 175 A-DVSRLKTTMEQL 187 (191)
Q Consensus 175 ~-~~~~l~~~i~~~ 187 (191)
. ....+.....+.
T Consensus 110 ~~~~~~~~~~~~~~ 123 (127)
T COG0526 110 VLPKEALIDALGEL 123 (127)
T ss_pred cCCHHHHHHHhcch
Confidence 3 555555554443
No 115
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.07 E-value=2.1e-09 Score=81.85 Aligned_cols=90 Identities=18% Similarity=0.283 Sum_probs=71.3
Q ss_pred CCCcEEEEEEcCCChhhcchhHHHHHHHhhCC--CcEEEEEECCCc------c---------------------hHHHHH
Q 029545 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQK------G---------------------LESTLS 150 (191)
Q Consensus 100 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~--~v~~~~vd~d~~------~---------------------~~~l~~ 150 (191)
.++++||+||++||+.|....+.+.++.++++ ++.++.|.+|.. . ...+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 46799999999999999999999999999987 489999988641 1 125677
Q ss_pred hcCCCcccEEEEEe-CCeEEEEEe------C---C-CHHHHHHHHHHHhc
Q 029545 151 KLNISAVPTFLFFQ-HGEKVAEIV------G---A-DVSRLKTTMEQLYK 189 (191)
Q Consensus 151 ~~~I~~~Pt~~~~~-~G~~~~~~~------G---~-~~~~l~~~i~~~~~ 189 (191)
.|++..+|++++++ +|+.+.... + . +.+++.+.|++++.
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 153 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLA 153 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHc
Confidence 89999999999996 787765421 1 1 56889999988875
No 116
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.06 E-value=1.1e-09 Score=83.75 Aligned_cols=94 Identities=22% Similarity=0.335 Sum_probs=86.6
Q ss_pred CCCCCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCC
Q 029545 76 DGPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNIS 155 (191)
Q Consensus 76 ~~~~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~ 155 (191)
.+.....++.++.+|-+..+ ...-||+.||-+.-..|+-|...++.+++.+.+.+|++||+... |-++.+++|.
T Consensus 63 ~GhG~y~ev~~Ekdf~~~~~----kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~--PFlv~kL~Ik 136 (211)
T KOG1672|consen 63 KGHGEYEEVASEKDFFEEVK----KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKA--PFLVTKLNIK 136 (211)
T ss_pred cCCceEEEeccHHHHHHHhh----cCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccC--ceeeeeeeee
Confidence 46778899999999988764 35679999999999999999999999999999999999999997 9999999999
Q ss_pred cccEEEEEeCCeEEEEEeCC
Q 029545 156 AVPTFLFFQHGEKVAEIVGA 175 (191)
Q Consensus 156 ~~Pt~~~~~~G~~~~~~~G~ 175 (191)
.+|++.+|++|+.+.+++|.
T Consensus 137 VLP~v~l~k~g~~~D~iVGF 156 (211)
T KOG1672|consen 137 VLPTVALFKNGKTVDYVVGF 156 (211)
T ss_pred EeeeEEEEEcCEEEEEEeeH
Confidence 99999999999999999986
No 117
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=99.01 E-value=2.8e-09 Score=76.51 Aligned_cols=99 Identities=19% Similarity=0.458 Sum_probs=65.8
Q ss_pred ecCHHHHHHHHhhhhcCCCcEEEEEEcC-------CChhhcchhHHHHHHHhhCC-CcEEEEEECCCc-----chHHHHH
Q 029545 84 IESGEEFNSSLGKVKDDSLPAIFYFTAA-------WCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQK-----GLESTLS 150 (191)
Q Consensus 84 i~s~~~f~~~l~~~~~~~k~vlV~F~a~-------wC~~C~~~~p~~~~la~~~~-~v~~~~vd~d~~-----~~~~l~~ 150 (191)
+..-++|.+.++...+++++++|.|+++ ||+.|....|.+++.....+ +..++.|.+... .......
T Consensus 2 v~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~ 81 (119)
T PF06110_consen 2 VRGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRT 81 (119)
T ss_dssp EECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH
T ss_pred ccCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceE
Confidence 4466889999987777889999999974 99999999999998877776 488888887542 1123333
Q ss_pred --hcCCCcccEEEEEeCCeEEEEEeCC---CHHHHHHHHH
Q 029545 151 --KLNISAVPTFLFFQHGEKVAEIVGA---DVSRLKTTME 185 (191)
Q Consensus 151 --~~~I~~~Pt~~~~~~G~~~~~~~G~---~~~~l~~~i~ 185 (191)
++++.++||++-+..++. ..+. +.+.+..+++
T Consensus 82 ~p~~~l~~IPTLi~~~~~~r---L~e~e~~~~~lv~~~~e 118 (119)
T PF06110_consen 82 DPDLKLKGIPTLIRWETGER---LVEEECLNEDLVEMFFE 118 (119)
T ss_dssp --CC---SSSEEEECTSS-E---EEHHHHH-HHHHHHHHH
T ss_pred cceeeeeecceEEEECCCCc---cchhhhccHHHHHHHhc
Confidence 599999999999987743 4443 6666666654
No 118
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.96 E-value=1.3e-08 Score=72.53 Aligned_cols=103 Identities=18% Similarity=0.366 Sum_probs=88.1
Q ss_pred EecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC-cEEEEEECCCcchHHHHHhcCCCcccEEE
Q 029545 83 VIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVPTFL 161 (191)
Q Consensus 83 ~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~-v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~ 161 (191)
.+.|.++.++++.. ++.+.+||-|.-.|-+.|.++...+.+++....+ +.++-||+|+- +++.+.|++...||++
T Consensus 7 ~L~s~~~VdqaI~~--t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV--~~~~~~~~l~~p~tvm 82 (142)
T KOG3414|consen 7 TLHSGWEVDQAILS--TEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEV--PDFVKMYELYDPPTVM 82 (142)
T ss_pred ccccHHHHHHHHhc--ccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchh--hhhhhhhcccCCceEE
Confidence 45677888888865 6789999999999999999999999999999988 88999999975 9999999999999999
Q ss_pred EEeCCeEEE---------EEeCC--CHHHHHHHHHHHhc
Q 029545 162 FFQHGEKVA---------EIVGA--DVSRLKTTMEQLYK 189 (191)
Q Consensus 162 ~~~~G~~~~---------~~~G~--~~~~l~~~i~~~~~ 189 (191)
||-+++.+. +++++ +.+++.+.++..++
T Consensus 83 fFfn~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~iyR 121 (142)
T KOG3414|consen 83 FFFNNKHMKIDLGTGDNNKINFAFEDKQEFIDIIETIYR 121 (142)
T ss_pred EEEcCceEEEeeCCCCCceEEEEeccHHHHHHHHHHHHH
Confidence 997776543 45565 78999999887754
No 119
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.2e-08 Score=75.51 Aligned_cols=93 Identities=17% Similarity=0.365 Sum_probs=73.5
Q ss_pred hhhhcCCCcEEEEEEcCCChhhcchhHHH---HHHHhhCCC-cEEEEEECCCc--------------chHHHHHhcCCCc
Q 029545 95 GKVKDDSLPAIFYFTAAWCGPCKFIWPVI---GELSAKHPH-VTTYKIDIDQK--------------GLESTLSKLNISA 156 (191)
Q Consensus 95 ~~~~~~~k~vlV~F~a~wC~~C~~~~p~~---~~la~~~~~-v~~~~vd~d~~--------------~~~~l~~~~~I~~ 156 (191)
+++..+++..++.|-++.|.+|.++...+ .++..-+.+ +.++.+++... ...+|++.|+|++
T Consensus 36 ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrs 115 (182)
T COG2143 36 KSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRS 115 (182)
T ss_pred HhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhcccc
Confidence 34567889999999999999999998876 344444443 77777776432 1249999999999
Q ss_pred ccEEEEEe-CCeEEEEEeCC-CHHHHHHHHHHH
Q 029545 157 VPTFLFFQ-HGEKVAEIVGA-DVSRLKTTMEQL 187 (191)
Q Consensus 157 ~Pt~~~~~-~G~~~~~~~G~-~~~~l~~~i~~~ 187 (191)
+||++||+ +|+.+..+.|. +++++...++-+
T Consensus 116 tPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYV 148 (182)
T COG2143 116 TPTFVFFDKTGKTILELPGYMPPEQFLAVLKYV 148 (182)
T ss_pred CceEEEEcCCCCEEEecCCCCCHHHHHHHHHHH
Confidence 99999995 88999999999 888887766543
No 120
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.93 E-value=7.5e-09 Score=76.34 Aligned_cols=84 Identities=10% Similarity=0.025 Sum_probs=66.3
Q ss_pred CCcEEEEEEcCC-ChhhcchhHHHHHHHhhCCCcEEEEEECCCcc---------------------hHHHHHhcCCCc--
Q 029545 101 SLPAIFYFTAAW-CGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG---------------------LESTLSKLNISA-- 156 (191)
Q Consensus 101 ~k~vlV~F~a~w-C~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~---------------------~~~l~~~~~I~~-- 156 (191)
++++||.||+.| |++|+...+.++++.++++++.++.|+.|..+ ...+++.|++..
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~ 105 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIKD 105 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCeecc
Confidence 679999999998 69999999999999999988999999886420 135667888753
Q ss_pred ----ccEEEEEe-CCeEEEEEeCC---CHHHHHHHH
Q 029545 157 ----VPTFLFFQ-HGEKVAEIVGA---DVSRLKTTM 184 (191)
Q Consensus 157 ----~Pt~~~~~-~G~~~~~~~G~---~~~~l~~~i 184 (191)
.|+.++++ +|+.+....|. +..++++.|
T Consensus 106 ~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 106 LGLLARAVFVIDENGKVIYVELVPEITDEPDYEAAL 141 (143)
T ss_pred CCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence 68888885 99999888875 445566554
No 121
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.93 E-value=8.6e-09 Score=79.60 Aligned_cols=89 Identities=16% Similarity=0.172 Sum_probs=64.8
Q ss_pred CCcE-EEEEEcCCChhhcchhHHHHHHHhhCC--CcEEEEEECCC---------cchHHH-HHh----------------
Q 029545 101 SLPA-IFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQ---------KGLEST-LSK---------------- 151 (191)
Q Consensus 101 ~k~v-lV~F~a~wC~~C~~~~p~~~~la~~~~--~v~~~~vd~d~---------~~~~~l-~~~---------------- 151 (191)
++++ |+.+||+||++|+...|.++++.+++. ++.++.|+++. ++.... .++
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g~ 119 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNGE 119 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCCC
Confidence 5655 456699999999999999999999886 48899998642 001111 111
Q ss_pred --------------------cCCCcccE---EEEE-eCCeEEEEEeCC-CHHHHHHHHHHHhc
Q 029545 152 --------------------LNISAVPT---FLFF-QHGEKVAEIVGA-DVSRLKTTMEQLYK 189 (191)
Q Consensus 152 --------------------~~I~~~Pt---~~~~-~~G~~~~~~~G~-~~~~l~~~i~~~~~ 189 (191)
+++.++|+ .+++ ++|+.+.++.|. +.+.+.+.|+++++
T Consensus 120 ~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 120 NTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred CCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHhc
Confidence 13457794 3444 699999999998 88889999998875
No 122
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.91 E-value=7.7e-09 Score=75.75 Aligned_cols=84 Identities=10% Similarity=0.063 Sum_probs=66.7
Q ss_pred CCcEEEEEE-cCCChhhcchhHHHHHHHhhCC--CcEEEEEECCCcc-------------------hHHHHHhcCCCcc-
Q 029545 101 SLPAIFYFT-AAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQKG-------------------LESTLSKLNISAV- 157 (191)
Q Consensus 101 ~k~vlV~F~-a~wC~~C~~~~p~~~~la~~~~--~v~~~~vd~d~~~-------------------~~~l~~~~~I~~~- 157 (191)
+++++|.|| +.||+.|....+.+.++.+++. ++.++.|..|..+ ...+.+.|++...
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~ 102 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEK 102 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccc
Confidence 679999999 5899999999999999888774 4888888765431 1267788898888
Q ss_pred --------cEEEEEe-CCeEEEEEeCC-CHHHHHHHH
Q 029545 158 --------PTFLFFQ-HGEKVAEIVGA-DVSRLKTTM 184 (191)
Q Consensus 158 --------Pt~~~~~-~G~~~~~~~G~-~~~~l~~~i 184 (191)
|++++++ +|+.+..+.|. ..+.+.+.+
T Consensus 103 ~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 103 KKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred ccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 8888886 79999999998 666666554
No 123
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.91 E-value=8.4e-09 Score=67.75 Aligned_cols=70 Identities=21% Similarity=0.470 Sum_probs=50.5
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHh-----cCCCcccEEEEEeCCeEEEEEeCCCHHH
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSK-----LNISAVPTFLFFQHGEKVAEIVGADVSR 179 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~-----~~I~~~Pt~~~~~~G~~~~~~~G~~~~~ 179 (191)
++.||++||++|+++.+.++++ ++.+-.+|++++ ...... +++.++|++ ++.+|+.+. ..+..+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-----~~~~~~idi~~~--~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~---~~~~~~ 70 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-----GAAYEWVDIEED--EGAADRVVSVNNGNMTVPTV-KFADGSFLT---NPSAAQ 70 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCceEEEeCcCC--HhHHHHHHHHhCCCceeCEE-EECCCeEec---CCCHHH
Confidence 6789999999999999998766 355667888875 333333 489999997 477786543 446666
Q ss_pred HHHHHH
Q 029545 180 LKTTME 185 (191)
Q Consensus 180 l~~~i~ 185 (191)
+.+.|+
T Consensus 71 ~~~~l~ 76 (77)
T TIGR02200 71 VKAKLQ 76 (77)
T ss_pred HHHHhh
Confidence 666554
No 124
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.91 E-value=3.2e-09 Score=79.15 Aligned_cols=71 Identities=18% Similarity=0.502 Sum_probs=56.7
Q ss_pred CCCcEEEEEEcCCChhhcchhHHHHHHHhhC----CCcEEEEEECCCcc-----------------------hHHHHHhc
Q 029545 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKH----PHVTTYKIDIDQKG-----------------------LESTLSKL 152 (191)
Q Consensus 100 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~----~~v~~~~vd~d~~~-----------------------~~~l~~~~ 152 (191)
.+|.+.++|.|.||++|+.+-|.+.++..+. +.+.++.|+-|.++ ..+++.+|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 3689999999999999999999887665544 34777888877642 13788899
Q ss_pred CCCcccEEEEEe-CCeEEE
Q 029545 153 NISAVPTFLFFQ-HGEKVA 170 (191)
Q Consensus 153 ~I~~~Pt~~~~~-~G~~~~ 170 (191)
+|.++|++++.+ +|..+.
T Consensus 112 ~v~~iP~l~i~~~dG~~v~ 130 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVVT 130 (157)
T ss_pred ccCcCceeEEecCCCCEeh
Confidence 999999999885 887664
No 125
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.91 E-value=6.1e-09 Score=76.09 Aligned_cols=84 Identities=20% Similarity=0.513 Sum_probs=52.3
Q ss_pred CCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhc---CCCcccEEEEEe-CCeEEEEEeCC
Q 029545 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKL---NISAVPTFLFFQ-HGEKVAEIVGA 175 (191)
Q Consensus 100 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~---~I~~~Pt~~~~~-~G~~~~~~~G~ 175 (191)
.++.-++.|..+|||.|....|.+.++++..+++.+-.+..|.+ .++..+| |...+||+++++ +|+.+.+. |.
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~--~el~~~~lt~g~~~IP~~I~~d~~~~~lg~w-ge 116 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDEN--KELMDQYLTNGGRSIPTFIFLDKDGKELGRW-GE 116 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHH--HHHTTTTTT-SS--SSEEEEE-TT--EEEEE-ES
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCC--hhHHHHHHhCCCeecCEEEEEcCCCCEeEEE-cC
Confidence 34567899999999999999999999999998877766766654 5655544 688999999996 56777765 44
Q ss_pred CHHHHHHHHHH
Q 029545 176 DVSRLKTTMEQ 186 (191)
Q Consensus 176 ~~~~l~~~i~~ 186 (191)
.++.+.+++++
T Consensus 117 rP~~~~~~~~~ 127 (129)
T PF14595_consen 117 RPKEVQELVDE 127 (129)
T ss_dssp S-HHHH-----
T ss_pred CCHHHhhcccc
Confidence 66666666554
No 126
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.90 E-value=1.5e-08 Score=77.20 Aligned_cols=74 Identities=9% Similarity=0.030 Sum_probs=60.7
Q ss_pred CCcEEEEEEcCC-ChhhcchhHHHHHHHhhCCCcEEEEEECCCcc---------------------hHHHHHhcCCCccc
Q 029545 101 SLPAIFYFTAAW-CGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG---------------------LESTLSKLNISAVP 158 (191)
Q Consensus 101 ~k~vlV~F~a~w-C~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~---------------------~~~l~~~~~I~~~P 158 (191)
++++||.||+.| |++|....+.++++.+++.++.++.|+.|... ...+++.||+...|
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~ 123 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAIAE 123 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCeecc
Confidence 679999999999 99999999999999999878888888876421 12667888988777
Q ss_pred ---------EEEEEe-CCeEEEEEeC
Q 029545 159 ---------TFLFFQ-HGEKVAEIVG 174 (191)
Q Consensus 159 ---------t~~~~~-~G~~~~~~~G 174 (191)
+.++++ +|+.+....+
T Consensus 124 ~~~~g~~~r~tfvId~~G~I~~~~~~ 149 (167)
T PRK00522 124 GPLKGLLARAVFVLDENNKVVYSELV 149 (167)
T ss_pred cccCCceeeEEEEECCCCeEEEEEEC
Confidence 777775 8988887754
No 127
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.90 E-value=9.2e-09 Score=63.42 Aligned_cols=60 Identities=28% Similarity=0.608 Sum_probs=50.6
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHH---HhcCCCcccEEEEEeCC
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTL---SKLNISAVPTFLFFQHG 166 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~---~~~~I~~~Pt~~~~~~G 166 (191)
++.||++||++|+.+.+.+.++....+++.+..++++... +.. ..+++.++|+++++++|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDP--ALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCCh--HHhhHHHhCCCccccEEEEEeCC
Confidence 5789999999999999999998555556999999999873 333 47899999999999877
No 128
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.86 E-value=4.8e-08 Score=77.37 Aligned_cols=94 Identities=13% Similarity=0.308 Sum_probs=72.3
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCc---------chHHHHHhcCCCccc
Q 029545 88 EEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK---------GLESTLSKLNISAVP 158 (191)
Q Consensus 88 ~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~---------~~~~l~~~~~I~~~P 158 (191)
++-++.++.+. ++.-|+.||.+.|++|+.+.|.+..++++| |+.+..|++|.. ...+++++++|..+|
T Consensus 109 ~~~~~~l~~la--~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~P 185 (215)
T PF13728_consen 109 QKRDKALKQLA--QKYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTP 185 (215)
T ss_pred HHHHHHHHHHh--hCeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCC
Confidence 34455565543 568899999999999999999999999999 888888888732 136889999999999
Q ss_pred EEEEEe-CC-eEEEEEeCC-CHHHHHHHH
Q 029545 159 TFLFFQ-HG-EKVAEIVGA-DVSRLKTTM 184 (191)
Q Consensus 159 t~~~~~-~G-~~~~~~~G~-~~~~l~~~i 184 (191)
+++++. ++ +...--.|. +.++|.+-|
T Consensus 186 al~Lv~~~~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 186 ALFLVNPNTKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred EEEEEECCCCeEEEEeeecCCHHHHHHhh
Confidence 999986 34 333344576 888887643
No 129
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.84 E-value=8.6e-10 Score=86.62 Aligned_cols=97 Identities=22% Similarity=0.360 Sum_probs=83.2
Q ss_pred eEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC--cEEEEEECCCcchHHHHHhcCCCccc
Q 029545 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH--VTTYKIDIDQKGLESTLSKLNISAVP 158 (191)
Q Consensus 81 ~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~--v~~~~vd~d~~~~~~l~~~~~I~~~P 158 (191)
.+...+++++...++ .-|++.|+|+||+.|+...+.|+.++.--.| |.+++||+..+ +.+.-+|-|...|
T Consensus 25 ~~~~~~eenw~~~l~------gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~n--pgLsGRF~vtaLp 96 (248)
T KOG0913|consen 25 KLTRIDEENWKELLT------GEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTN--PGLSGRFLVTALP 96 (248)
T ss_pred eeEEecccchhhhhc------hHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEec--cccceeeEEEecc
Confidence 344447789988873 3799999999999999999999999876555 99999999997 8999999999999
Q ss_pred EEEEEeCCeEEEEEeCC-CHHHHHHHHHH
Q 029545 159 TFLFFQHGEKVAEIVGA-DVSRLKTTMEQ 186 (191)
Q Consensus 159 t~~~~~~G~~~~~~~G~-~~~~l~~~i~~ 186 (191)
|+.-.++|.. .++.|. +..++..+++.
T Consensus 97 tIYHvkDGeF-rrysgaRdk~dfisf~~~ 124 (248)
T KOG0913|consen 97 TIYHVKDGEF-RRYSGARDKNDFISFEEH 124 (248)
T ss_pred eEEEeecccc-ccccCcccchhHHHHHHh
Confidence 9999999964 567888 99999988764
No 130
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.82 E-value=5.7e-08 Score=64.36 Aligned_cols=72 Identities=24% Similarity=0.413 Sum_probs=57.0
Q ss_pred EEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCeEEEEEeC-C-CHHHHHHH
Q 029545 106 FYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVG-A-DVSRLKTT 183 (191)
Q Consensus 106 V~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G-~-~~~~l~~~ 183 (191)
|.+++++|++|..+...+++++..+ ++.+-.+|... .+++ .+|||.++|++++ ||+.. +.| . +.++|+++
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~-~i~~ei~~~~~--~~~~-~~ygv~~vPalvI--ng~~~--~~G~~p~~~el~~~ 74 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEEL-GIEVEIIDIED--FEEI-EKYGVMSVPALVI--NGKVV--FVGRVPSKEELKEL 74 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHT-TEEEEEEETTT--HHHH-HHTT-SSSSEEEE--TTEEE--EESS--HHHHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhc-CCeEEEEEccC--HHHH-HHcCCCCCCEEEE--CCEEE--EEecCCCHHHHHHH
Confidence 3447888999999999999999998 57777777744 3666 9999999999976 88754 568 4 88999998
Q ss_pred HH
Q 029545 184 ME 185 (191)
Q Consensus 184 i~ 185 (191)
|+
T Consensus 75 l~ 76 (76)
T PF13192_consen 75 LE 76 (76)
T ss_dssp HH
T ss_pred hC
Confidence 85
No 131
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.81 E-value=2.2e-08 Score=71.68 Aligned_cols=70 Identities=23% Similarity=0.445 Sum_probs=58.4
Q ss_pred CCCcEEEEEEcC-CChhhcchhHHHHHHHhhCC--CcEEEEEECCCcc-------------------hHHHHHhcCCC--
Q 029545 100 DSLPAIFYFTAA-WCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQKG-------------------LESTLSKLNIS-- 155 (191)
Q Consensus 100 ~~k~vlV~F~a~-wC~~C~~~~p~~~~la~~~~--~v~~~~vd~d~~~-------------------~~~l~~~~~I~-- 155 (191)
.+++++|.||+. ||++|+...+.++++.++++ ++.++.|..|..+ ...+.+.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 368999999999 99999999999999998876 6999999987642 12678889998
Q ss_pred ----cccEEEEEe-CCeEE
Q 029545 156 ----AVPTFLFFQ-HGEKV 169 (191)
Q Consensus 156 ----~~Pt~~~~~-~G~~~ 169 (191)
.+|++++++ +|+.+
T Consensus 104 ~~~~~~p~~~lid~~g~I~ 122 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKIR 122 (124)
T ss_dssp TTSEESEEEEEEETTSBEE
T ss_pred cCCceEeEEEEECCCCEEE
Confidence 999999886 56554
No 132
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.80 E-value=5.6e-08 Score=65.67 Aligned_cols=79 Identities=13% Similarity=0.241 Sum_probs=60.5
Q ss_pred EEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcc--hHHHHHhcC--CCcccEEEEEeCCeEEEEEeCCCHHH
Q 029545 104 AIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG--LESTLSKLN--ISAVPTFLFFQHGEKVAEIVGADVSR 179 (191)
Q Consensus 104 vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~--~~~l~~~~~--I~~~Pt~~~~~~G~~~~~~~G~~~~~ 179 (191)
-++.|+.+||++|++....++++..++.++.+..+|++.+. ..++....+ +..+|++++ +|+.+. ..++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~ig-----g~~~ 74 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHIG-----GCTD 74 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEEc-----CHHH
Confidence 37889999999999999999999988778999999998752 234554444 589999864 787643 4567
Q ss_pred HHHHHHHHhc
Q 029545 180 LKTTMEQLYK 189 (191)
Q Consensus 180 l~~~i~~~~~ 189 (191)
|.+++++.+.
T Consensus 75 ~~~~~~~~~~ 84 (85)
T PRK11200 75 FEAYVKENLG 84 (85)
T ss_pred HHHHHHHhcc
Confidence 7777776653
No 133
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=4.1e-09 Score=82.41 Aligned_cols=99 Identities=26% Similarity=0.353 Sum_probs=85.3
Q ss_pred eEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEE
Q 029545 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTF 160 (191)
Q Consensus 81 ~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~ 160 (191)
++.+...++| .. ..++..++.||++||..|+++...++.+++..+++.+++++.+.. ++++..+.+.++|++
T Consensus 3 v~~i~~~~~f--~~----~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~--~eis~~~~v~~vp~~ 74 (227)
T KOG0911|consen 3 VQFIVFQEQF--LD----QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEF--PEISNLIAVEAVPYF 74 (227)
T ss_pred ceeehhHHHH--HH----hccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhh--hHHHHHHHHhcCcee
Confidence 4566667777 32 257899999999999999999999999999988899999999986 999999999999999
Q ss_pred EEEeCCeEEEEEeCCCHHHHHHHHHHH
Q 029545 161 LFFQHGEKVAEIVGADVSRLKTTMEQL 187 (191)
Q Consensus 161 ~~~~~G~~~~~~~G~~~~~l~~~i~~~ 187 (191)
+++..|+.+.+..|.++..+...++.+
T Consensus 75 ~~~~~~~~v~~l~~~~~~~~~~~~~~~ 101 (227)
T KOG0911|consen 75 VFFFLGEKVDRLSGADPPFLVSKVEKL 101 (227)
T ss_pred eeeecchhhhhhhccCcHHHHHHHHHh
Confidence 999999999999999776666665554
No 134
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.79 E-value=1.3e-07 Score=68.24 Aligned_cols=102 Identities=19% Similarity=0.326 Sum_probs=81.6
Q ss_pred EEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC-cEEEEEECCCcchHHHHHhcCCCccc-E
Q 029545 82 LVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVP-T 159 (191)
Q Consensus 82 ~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~-v~~~~vd~d~~~~~~l~~~~~I~~~P-t 159 (191)
..+.+..+.++++.. ++++.++|-|.-+|-+.|.++...+.+++.+.++ ..++.||+++- +++.+.|.+. .| |
T Consensus 3 ~~L~s~~~VDqAI~~--e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~V--pdfn~~yel~-dP~t 77 (133)
T PF02966_consen 3 PHLHSGWHVDQAILS--EEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEV--PDFNQMYELY-DPCT 77 (133)
T ss_dssp EEE-SHHHHHHHHHH---SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTT--HCCHHHTTS--SSEE
T ss_pred cccCccchHHHHHhc--cCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccc--hhhhcccccC-CCeE
Confidence 356788899999865 7889999999999999999999999999999888 88999999975 8999999998 88 6
Q ss_pred EEEEeCCeEEE---------EEeCC--CHHHHHHHHHHHh
Q 029545 160 FLFFQHGEKVA---------EIVGA--DVSRLKTTMEQLY 188 (191)
Q Consensus 160 ~~~~~~G~~~~---------~~~G~--~~~~l~~~i~~~~ 188 (191)
++||-+++.+. ++.+. +.+++.+.++...
T Consensus 78 vmFF~rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~iy 117 (133)
T PF02966_consen 78 VMFFFRNKHMMVDFGTGNNNKINWAFEDKQEFIDIIETIY 117 (133)
T ss_dssp EEEEETTEEEEEESSSSSSSSBCS--SCHHHHHHHHHHHH
T ss_pred EEEEecCeEEEEEecCCCccEEEEEcCcHHHHHHHHHHHH
Confidence 77776777664 23344 6889998888765
No 135
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=3.5e-08 Score=69.87 Aligned_cols=80 Identities=25% Similarity=0.436 Sum_probs=62.9
Q ss_pred cCHHHHHHHHhhhhcCCCcEEEEEEc--------CCChhhcchhHHHHHHHhhCCC-cEEEEEECCCc-----chHHHHH
Q 029545 85 ESGEEFNSSLGKVKDDSLPAIFYFTA--------AWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQK-----GLESTLS 150 (191)
Q Consensus 85 ~s~~~f~~~l~~~~~~~k~vlV~F~a--------~wC~~C~~~~p~~~~la~~~~~-v~~~~vd~d~~-----~~~~l~~ 150 (191)
.-.++|++.++.+.+. +.++|+|++ +|||.|.+..|.+.+..+..+. +.|+.|++..- .......
T Consensus 10 ~g~e~~~~~~~~~~n~-~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~ 88 (128)
T KOG3425|consen 10 PGYESFEETLKNVENG-KTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRK 88 (128)
T ss_pred chHHHHHHHHHHHhCC-ceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCcccc
Confidence 3468899999877544 459999998 5999999999999988887764 99999998652 1235556
Q ss_pred hcCC-CcccEEEEEeC
Q 029545 151 KLNI-SAVPTFLFFQH 165 (191)
Q Consensus 151 ~~~I-~~~Pt~~~~~~ 165 (191)
..++ .++||++-+++
T Consensus 89 d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 89 DPGILTAVPTLLRWKR 104 (128)
T ss_pred CCCceeecceeeEEcC
Confidence 6677 89999998875
No 136
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.78 E-value=6.7e-08 Score=73.81 Aligned_cols=87 Identities=9% Similarity=0.087 Sum_probs=66.3
Q ss_pred CCcEEEEEE-cCCChhhcchhHHHHHHHhhCC--CcEEEEEECCCcc--------------------------hHHHHHh
Q 029545 101 SLPAIFYFT-AAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQKG--------------------------LESTLSK 151 (191)
Q Consensus 101 ~k~vlV~F~-a~wC~~C~~~~p~~~~la~~~~--~v~~~~vd~d~~~--------------------------~~~l~~~ 151 (191)
++++||.|| +.||++|....+.++++.+++. ++.++.|.+|..+ ...+.+.
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 108 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRD 108 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHHH
Confidence 679999999 8999999999999999988875 4888888876531 1245677
Q ss_pred cCCC------cccEEEEEe-CCeEEEEEeCC-----CHHHHHHHHHHH
Q 029545 152 LNIS------AVPTFLFFQ-HGEKVAEIVGA-----DVSRLKTTMEQL 187 (191)
Q Consensus 152 ~~I~------~~Pt~~~~~-~G~~~~~~~G~-----~~~~l~~~i~~~ 187 (191)
|++. ..|++++++ +|+.+....+. +.+++.+.|+++
T Consensus 109 ~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 109 YGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred hCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8876 577888886 88888877654 456677777654
No 137
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.77 E-value=4.1e-08 Score=75.86 Aligned_cols=89 Identities=10% Similarity=0.182 Sum_probs=64.5
Q ss_pred CCCcEEEEEEcCCChhhcchhHHHHHHHhhCC--CcEEEEEECCC---------cchHHHHH-hcCCC------------
Q 029545 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQ---------KGLESTLS-KLNIS------------ 155 (191)
Q Consensus 100 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~--~v~~~~vd~d~---------~~~~~l~~-~~~I~------------ 155 (191)
.++++||.|||+||+.|. ..+.++++.++|. ++.++.+.|+. ++....++ ++++.
T Consensus 24 ~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~Fpv~~k~dvnG~ 102 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVTFPMFSKIEVNGE 102 (183)
T ss_pred CCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCCCceeEEEEccCCC
Confidence 368999999999999997 4889999999986 48999998852 12344454 56654
Q ss_pred -----------ccc--------------------------------EEEEEeCCeEEEEEeCC-CHHH--HHHHHHHHhc
Q 029545 156 -----------AVP--------------------------------TFLFFQHGEKVAEIVGA-DVSR--LKTTMEQLYK 189 (191)
Q Consensus 156 -----------~~P--------------------------------t~~~~~~G~~~~~~~G~-~~~~--l~~~i~~~~~ 189 (191)
..| -+++-++|+.+.++... .+.+ |++.|++++.
T Consensus 103 ~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~r~~~~~~p~~~~i~~~i~~~l~ 182 (183)
T PRK10606 103 GRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQRFSPDMTPEDPIVMESIKLALA 182 (183)
T ss_pred CCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEEEECCCCCCCHHHHHHHHHHHhc
Confidence 234 23333689999888766 5554 8898888774
No 138
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.73 E-value=1.1e-07 Score=73.71 Aligned_cols=86 Identities=16% Similarity=0.165 Sum_probs=64.7
Q ss_pred CCcEEEEEE-cCCChhhcchhHHHHHHHhhCC--CcEEEEEECCCcc-----------------------hHHHHHhcCC
Q 029545 101 SLPAIFYFT-AAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQKG-----------------------LESTLSKLNI 154 (191)
Q Consensus 101 ~k~vlV~F~-a~wC~~C~~~~p~~~~la~~~~--~v~~~~vd~d~~~-----------------------~~~l~~~~~I 154 (191)
++++||.|| +.||+.|....+.+.++.+++. ++.++.|.+|... ...+++.|++
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv 110 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGV 110 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhCC
Confidence 679999999 9999999999999998888774 5888888876420 1266788898
Q ss_pred C------cccEEEEEe-CCeEEEEEeCC-----CHHHHHHHHHH
Q 029545 155 S------AVPTFLFFQ-HGEKVAEIVGA-----DVSRLKTTMEQ 186 (191)
Q Consensus 155 ~------~~Pt~~~~~-~G~~~~~~~G~-----~~~~l~~~i~~ 186 (191)
. ..|+.++++ +|+......+. +.+++.+.|+.
T Consensus 111 ~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 111 LIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred cccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 6 469888885 88888765432 56666666544
No 139
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.73 E-value=4.2e-08 Score=74.04 Aligned_cols=77 Identities=17% Similarity=0.304 Sum_probs=47.8
Q ss_pred HHhhhhcCCCcEEEEEEcCCChhhcchhHHH---HHHHhhCC-CcEEEEEECCCcchHHHHHhc--------CCCcccEE
Q 029545 93 SLGKVKDDSLPAIFYFTAAWCGPCKFIWPVI---GELSAKHP-HVTTYKIDIDQKGLESTLSKL--------NISAVPTF 160 (191)
Q Consensus 93 ~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~---~~la~~~~-~v~~~~vd~d~~~~~~l~~~~--------~I~~~Pt~ 160 (191)
+++.++.++|+++|.++.+||..|+.|.... .++++.+. ++.-++||.++. +++...| |..|.|+.
T Consensus 29 a~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~--Pdid~~y~~~~~~~~~~gGwPl~ 106 (163)
T PF03190_consen 29 ALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREER--PDIDKIYMNAVQAMSGSGGWPLT 106 (163)
T ss_dssp HHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT---HHHHHHHHHHHHHHHS---SSEE
T ss_pred HHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccC--ccHHHHHHHHHHHhcCCCCCCce
Confidence 3444556799999999999999999987633 34444432 256666776665 8888777 78899999
Q ss_pred EEEe-CCeEEEE
Q 029545 161 LFFQ-HGEKVAE 171 (191)
Q Consensus 161 ~~~~-~G~~~~~ 171 (191)
+|+. +|+.+..
T Consensus 107 vfltPdg~p~~~ 118 (163)
T PF03190_consen 107 VFLTPDGKPFFG 118 (163)
T ss_dssp EEE-TTS-EEEE
T ss_pred EEECCCCCeeee
Confidence 8885 8887754
No 140
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.70 E-value=1.1e-07 Score=63.54 Aligned_cols=62 Identities=19% Similarity=0.402 Sum_probs=45.7
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcc---hHHHHHhcCCCcccEEEEEeCCeEE
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG---LESTLSKLNISAVPTFLFFQHGEKV 169 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~---~~~l~~~~~I~~~Pt~~~~~~G~~~ 169 (191)
|+.|+++||++|+++.+.++++.-. +.+.++.||.+.+. ...+.+.+++.++|++++ +|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~i 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKFI 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 5789999999999999999988622 12677777776542 123667789999999854 77654
No 141
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.69 E-value=3.7e-07 Score=73.90 Aligned_cols=97 Identities=12% Similarity=0.222 Sum_probs=74.2
Q ss_pred HHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcch---------HHHHHhcCCCcccE
Q 029545 89 EFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGL---------ESTLSKLNISAVPT 159 (191)
Q Consensus 89 ~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~---------~~l~~~~~I~~~Pt 159 (191)
+-++.++.+. ++.-++.||...|++|+++.|.++.++++| |+.+..|++|.... ..+++++||..+|+
T Consensus 140 ~~~~~i~~la--~~~gL~fFy~~~C~~C~~~apil~~fa~~y-gi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pa 216 (256)
T TIGR02739 140 QKEKAIQQLS--QSYGLFFFYRGKSPISQKMAPVIQAFAKEY-GISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPA 216 (256)
T ss_pred HHHHHHHHHH--hceeEEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCce
Confidence 3445555433 447899999999999999999999999999 68888888876422 46889999999999
Q ss_pred EEEEe-C-CeEEEEEeCC-CHHHHHHHHHHHh
Q 029545 160 FLFFQ-H-GEKVAEIVGA-DVSRLKTTMEQLY 188 (191)
Q Consensus 160 ~~~~~-~-G~~~~~~~G~-~~~~l~~~i~~~~ 188 (191)
++++. + ++..---.|. +.++|.+-|..+.
T Consensus 217 l~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 217 LYLVNPKSQKMSPLAYGFISQDELKERILNVL 248 (256)
T ss_pred EEEEECCCCcEEEEeeccCCHHHHHHHHHHHH
Confidence 98886 3 3333334577 9999988776654
No 142
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.69 E-value=1.7e-07 Score=69.96 Aligned_cols=86 Identities=8% Similarity=0.072 Sum_probs=62.9
Q ss_pred CCCcEEEEEEcC-CChhhcchhHHHHHHHhhCC--CcEEEEEECCCcc-------------------hHHHHHhcCCCcc
Q 029545 100 DSLPAIFYFTAA-WCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQKG-------------------LESTLSKLNISAV 157 (191)
Q Consensus 100 ~~k~vlV~F~a~-wC~~C~~~~p~~~~la~~~~--~v~~~~vd~d~~~-------------------~~~l~~~~~I~~~ 157 (191)
.++++||.||+. ||+.|....+.+.++.+++. ++.++.|+.|..+ ...+.+.|++...
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 108 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGE 108 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcc
Confidence 367999999986 78889999999988888774 4888888876431 1256778887654
Q ss_pred ------------cEEEEEe-CCeEEEEEeCC-CHHHHHHHHH
Q 029545 158 ------------PTFLFFQ-HGEKVAEIVGA-DVSRLKTTME 185 (191)
Q Consensus 158 ------------Pt~~~~~-~G~~~~~~~G~-~~~~l~~~i~ 185 (191)
|+.++++ +|+.+..+.|. ..+.+.+.++
T Consensus 109 ~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~~~~ 150 (154)
T PRK09437 109 KKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDVVLD 150 (154)
T ss_pred cccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHHHHH
Confidence 6666774 99999999987 3444444443
No 143
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.69 E-value=1.4e-07 Score=69.59 Aligned_cols=42 Identities=14% Similarity=0.222 Sum_probs=33.9
Q ss_pred CcEEEEE-EcCCChhhcchhHHHHHHHhhCC--CcEEEEEECCCc
Q 029545 102 LPAIFYF-TAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQK 143 (191)
Q Consensus 102 k~vlV~F-~a~wC~~C~~~~p~~~~la~~~~--~v~~~~vd~d~~ 143 (191)
++++|.| ++.||++|+...+.+.++.+++. ++.++.|..+..
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~ 68 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESP 68 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCH
Confidence 4555555 69999999999999999998874 588888887654
No 144
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.67 E-value=1.9e-07 Score=60.24 Aligned_cols=70 Identities=19% Similarity=0.306 Sum_probs=50.6
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcc--hHHHHHhcCCCcccEEEEEeCCeEEEEEeCCCHHHHHH
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG--LESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKT 182 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~--~~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~~~~~l~~ 182 (191)
++.|+++||++|..+...+++. ++.+..+|++.+. ..++.+..++.++|++++ +| ..+.|.+++.|++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~---~~i~g~~~~~l~~ 71 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-----GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GD---EHLSGFRPDKLRA 71 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-----CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CC---EEEecCCHHHHHh
Confidence 5789999999999998888763 5777788887651 123333347889999975 45 3556778888877
Q ss_pred HH
Q 029545 183 TM 184 (191)
Q Consensus 183 ~i 184 (191)
++
T Consensus 72 ~~ 73 (73)
T cd02976 72 LL 73 (73)
T ss_pred hC
Confidence 64
No 145
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.63 E-value=2.4e-07 Score=68.48 Aligned_cols=83 Identities=12% Similarity=0.143 Sum_probs=61.4
Q ss_pred CcEEEEEE-cCCChhhcchhHHHHHHHhhCC--CcEEEEEECCCcc-------------------h--HHHHHhcCCCc-
Q 029545 102 LPAIFYFT-AAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQKG-------------------L--ESTLSKLNISA- 156 (191)
Q Consensus 102 k~vlV~F~-a~wC~~C~~~~p~~~~la~~~~--~v~~~~vd~d~~~-------------------~--~~l~~~~~I~~- 156 (191)
++++|.|| ++||+.|....|.++++.+++. ++.++.|+.+..+ . ..+.+.|++..
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~ 108 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDE 108 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccc
Confidence 78888888 9999999999999999988885 4888888765421 1 35677888873
Q ss_pred ---cc--EEEEEe-CCeEEEEEeCCC-----HHHHHHHH
Q 029545 157 ---VP--TFLFFQ-HGEKVAEIVGAD-----VSRLKTTM 184 (191)
Q Consensus 157 ---~P--t~~~~~-~G~~~~~~~G~~-----~~~l~~~i 184 (191)
+| ++++++ +|+.+....|.+ ..++.+.|
T Consensus 109 ~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~ 147 (149)
T cd03018 109 DLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEAL 147 (149)
T ss_pred cCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHh
Confidence 33 777775 899888888753 44555444
No 146
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.62 E-value=3.4e-07 Score=62.09 Aligned_cols=77 Identities=16% Similarity=0.312 Sum_probs=57.8
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcc--hHHHHHhcC--CCcccEEEEEeCCeEEEEEeCCCHHHH
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG--LESTLSKLN--ISAVPTFLFFQHGEKVAEIVGADVSRL 180 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~--~~~l~~~~~--I~~~Pt~~~~~~G~~~~~~~G~~~~~l 180 (191)
++.|..+||++|.+.+..++++..+++++.+..+|++.+. ..++.+..+ +..+|++++ +|+.+ | ..++|
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~i----g-G~~dl 74 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHV----G-GCTDF 74 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEe----c-CHHHH
Confidence 6789999999999999999999877777888888988542 235556666 379999964 67653 3 44667
Q ss_pred HHHHHHHh
Q 029545 181 KTTMEQLY 188 (191)
Q Consensus 181 ~~~i~~~~ 188 (191)
.+++++..
T Consensus 75 ~~~~~~~~ 82 (86)
T TIGR02183 75 EQLVKENF 82 (86)
T ss_pred HHHHHhcc
Confidence 77776654
No 147
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.61 E-value=8.7e-07 Score=71.41 Aligned_cols=97 Identities=10% Similarity=0.144 Sum_probs=72.8
Q ss_pred HHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcch---------HHHHHhcCCCcccE
Q 029545 89 EFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGL---------ESTLSKLNISAVPT 159 (191)
Q Consensus 89 ~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~---------~~l~~~~~I~~~Pt 159 (191)
+-++.++.+. ++.-|++||.+.|++|+++.|.++.++++| |+.++.|++|-... ...+++++|..+|+
T Consensus 133 ~~~~~i~~la--~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y-g~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PA 209 (248)
T PRK13703 133 QQRQAIAKLA--EHYGLMFFYRGQDPIDGQLAQVINDFRDTY-GLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPA 209 (248)
T ss_pred HHHHHHHHHH--hcceEEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccce
Confidence 3445555543 347899999999999999999999999999 67777777764211 35678999999999
Q ss_pred EEEEe--CCeEEEEEeCC-CHHHHHHHHHHHh
Q 029545 160 FLFFQ--HGEKVAEIVGA-DVSRLKTTMEQLY 188 (191)
Q Consensus 160 ~~~~~--~G~~~~~~~G~-~~~~l~~~i~~~~ 188 (191)
++++. .++..---.|. +.++|.+-|..+.
T Consensus 210 l~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~ 241 (248)
T PRK13703 210 LMLVDPKSGSVRPLSYGFITQDDLAKRFLNVS 241 (248)
T ss_pred EEEEECCCCcEEEEeeccCCHHHHHHHHHHHH
Confidence 99885 33444445577 9999988776654
No 148
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.55 E-value=7.4e-07 Score=71.40 Aligned_cols=83 Identities=16% Similarity=0.264 Sum_probs=62.9
Q ss_pred cCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECC------------------C------------------
Q 029545 99 DDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDID------------------Q------------------ 142 (191)
Q Consensus 99 ~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d------------------~------------------ 142 (191)
.+++.+++.|..+.||+|+++.+.+.++.+. ++.+..+... +
T Consensus 105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 105 PQEKHVITVFTDITCGYCHKLHEQMKDYNAL--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHHhcC--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 3567889999999999999999999887652 3444333211 0
Q ss_pred ------cchHHHHHhcCCCcccEEEEEeCCeEEEEEeCC-CHHHHHHHHHHH
Q 029545 143 ------KGLESTLSKLNISAVPTFLFFQHGEKVAEIVGA-DVSRLKTTMEQL 187 (191)
Q Consensus 143 ------~~~~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~i~~~ 187 (191)
+++.++++++||+++||++ +.+|+.+ .|. ++++|.++|++.
T Consensus 183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGTPAIV-LSNGTLV---PGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccchHHHhHHHHHHcCCccccEEE-EcCCeEe---eCCCCHHHHHHHHHHc
Confidence 0123788999999999999 6788765 688 899999999875
No 149
>PRK15000 peroxidase; Provisional
Probab=98.54 E-value=8.9e-07 Score=69.38 Aligned_cols=88 Identities=10% Similarity=0.178 Sum_probs=68.8
Q ss_pred CCCcEEEEEEc-CCChhhcchhHHHHHHHhhCC--CcEEEEEECCCcc--------------------------hHHHHH
Q 029545 100 DSLPAIFYFTA-AWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQKG--------------------------LESTLS 150 (191)
Q Consensus 100 ~~k~vlV~F~a-~wC~~C~~~~p~~~~la~~~~--~v~~~~vd~d~~~--------------------------~~~l~~ 150 (191)
.++++||.||+ .||+.|....+.+.++.+++. ++.++.|.+|... ...+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 36799999999 499999999999999998885 5888888887421 115667
Q ss_pred hcCCC------cccEEEEEe-CCeEEEEEeCC-----CHHHHHHHHHHH
Q 029545 151 KLNIS------AVPTFLFFQ-HGEKVAEIVGA-----DVSRLKTTMEQL 187 (191)
Q Consensus 151 ~~~I~------~~Pt~~~~~-~G~~~~~~~G~-----~~~~l~~~i~~~ 187 (191)
.|++. ++|+.++++ +|+......|. +.+++.+.++.+
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 78887 689888886 88888776653 677777777664
No 150
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.53 E-value=1.3e-06 Score=67.78 Aligned_cols=87 Identities=15% Similarity=0.158 Sum_probs=67.5
Q ss_pred CCcEEEEEE-cCCChhhcchhHHHHHHHhhCC--CcEEEEEECCCcc-----------------------hHHHHHhcCC
Q 029545 101 SLPAIFYFT-AAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQKG-----------------------LESTLSKLNI 154 (191)
Q Consensus 101 ~k~vlV~F~-a~wC~~C~~~~p~~~~la~~~~--~v~~~~vd~d~~~-----------------------~~~l~~~~~I 154 (191)
++++||.|| +.||+.|....+.+.++.+++. ++.++.|+.|... ...+++.||+
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv 110 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN 110 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCC
Confidence 678999999 9999999999999999999885 5888888876521 1367888998
Q ss_pred ----Ccc--cEEEEEe-CCeEEEEEeC-----CCHHHHHHHHHHH
Q 029545 155 ----SAV--PTFLFFQ-HGEKVAEIVG-----ADVSRLKTTMEQL 187 (191)
Q Consensus 155 ----~~~--Pt~~~~~-~G~~~~~~~G-----~~~~~l~~~i~~~ 187 (191)
.++ |+.++++ +|++...... .+.+++.+.|+.+
T Consensus 111 ~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 111 MREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred CcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 356 9888886 8887765432 2778888877665
No 151
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.48 E-value=6.1e-07 Score=65.72 Aligned_cols=43 Identities=19% Similarity=0.359 Sum_probs=37.1
Q ss_pred CCCcEEEEEEcCCChh-hcchhHHHHHHHhhCC-----CcEEEEEECCC
Q 029545 100 DSLPAIFYFTAAWCGP-CKFIWPVIGELSAKHP-----HVTTYKIDIDQ 142 (191)
Q Consensus 100 ~~k~vlV~F~a~wC~~-C~~~~p~~~~la~~~~-----~v~~~~vd~d~ 142 (191)
.++++||.||++||++ |....+.+.++.+++. ++.++.|..|.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 3679999999999998 9999999999988775 28888888764
No 152
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.47 E-value=9.9e-07 Score=64.38 Aligned_cols=77 Identities=8% Similarity=0.059 Sum_probs=60.1
Q ss_pred CCCcEEEEEE-cCCChhhcchhHHHHHHHhhCC--CcEEEEEECCCcc--------------------hHHHHHhcCCCc
Q 029545 100 DSLPAIFYFT-AAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQKG--------------------LESTLSKLNISA 156 (191)
Q Consensus 100 ~~k~vlV~F~-a~wC~~C~~~~p~~~~la~~~~--~v~~~~vd~d~~~--------------------~~~l~~~~~I~~ 156 (191)
.+++++|.|| +.||+.|....+.+.++.+++. ++.++.|..+..+ ...+.+.|++..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 3789999999 7899999999999999988863 5888888876421 125667888776
Q ss_pred cc---------EEEEEe-CCeEEEEEeCCC
Q 029545 157 VP---------TFLFFQ-HGEKVAEIVGAD 176 (191)
Q Consensus 157 ~P---------t~~~~~-~G~~~~~~~G~~ 176 (191)
.| ++++++ +|+.+....|..
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~~ 130 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIRYVEVEPL 130 (140)
T ss_pred ccccccCceeEEEEEECCCCcEEEEEecCC
Confidence 66 677775 799988888873
No 153
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.46 E-value=1.6e-06 Score=68.05 Aligned_cols=88 Identities=10% Similarity=0.077 Sum_probs=65.5
Q ss_pred CCcEEE-EEEcCCChhhcchhHHHHHHHhhCC--CcEEEEEECCCcc-------------------------hHHHHHhc
Q 029545 101 SLPAIF-YFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQKG-------------------------LESTLSKL 152 (191)
Q Consensus 101 ~k~vlV-~F~a~wC~~C~~~~p~~~~la~~~~--~v~~~~vd~d~~~-------------------------~~~l~~~~ 152 (191)
++.++| .||++||+.|....+.+.++.+++. ++.++.|++|... ...+++.|
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~y 106 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREY 106 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHc
Confidence 555554 6899999999999999999888875 5888888877420 13667888
Q ss_pred CCC------cccEEEEEe-CCeEEEEE----e-CCCHHHHHHHHHHHh
Q 029545 153 NIS------AVPTFLFFQ-HGEKVAEI----V-GADVSRLKTTMEQLY 188 (191)
Q Consensus 153 ~I~------~~Pt~~~~~-~G~~~~~~----~-G~~~~~l~~~i~~~~ 188 (191)
|+. .+|++++++ +|++.... . |.+.+++...|+.+.
T Consensus 107 gv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 107 NLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred CCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 884 589998886 77666544 2 348888888888764
No 154
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.46 E-value=2.1e-06 Score=63.33 Aligned_cols=40 Identities=25% Similarity=0.355 Sum_probs=33.1
Q ss_pred CCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEE
Q 029545 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKID 139 (191)
Q Consensus 100 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd 139 (191)
+.++.|+.|+.++|++|+.+.+.+.++...++++.+...+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~ 43 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKE 43 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEe
Confidence 4578899999999999999999999988877765555444
No 155
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.45 E-value=2e-06 Score=77.17 Aligned_cols=78 Identities=17% Similarity=0.292 Sum_probs=67.2
Q ss_pred CCcE-EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCeEEEEEeCC-CHH
Q 029545 101 SLPA-IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGA-DVS 178 (191)
Q Consensus 101 ~k~v-lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~-~~~ 178 (191)
++++ +-.|.+++|++|.+....+++++.+.+++..-.+|.... ++++++|+|.++|++++ ||+.+ +.|. +.+
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~--~~~~~~~~v~~vP~~~i--~~~~~--~~G~~~~~ 548 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHF--PDLKDEYGIMSVPAIVV--DDQQV--YFGKKTIE 548 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECccc--HHHHHhCCceecCEEEE--CCEEE--EeeCCCHH
Confidence 4566 555689999999999999999999999999999999987 89999999999999997 78755 3476 888
Q ss_pred HHHHHH
Q 029545 179 RLKTTM 184 (191)
Q Consensus 179 ~l~~~i 184 (191)
++.++|
T Consensus 549 ~~~~~~ 554 (555)
T TIGR03143 549 EMLELI 554 (555)
T ss_pred HHHHhh
Confidence 888876
No 156
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.44 E-value=3.9e-06 Score=58.79 Aligned_cols=97 Identities=11% Similarity=0.253 Sum_probs=70.2
Q ss_pred EEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC-cEEEEEECCCcc--hHHHHHhcCCC-cc
Q 029545 82 LVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKG--LESTLSKLNIS-AV 157 (191)
Q Consensus 82 ~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~-v~~~~vd~d~~~--~~~l~~~~~I~-~~ 157 (191)
.++.+.++++++++. ..+++++|.=.++.|+-.......|++.....++ +.++.+|+-++. ...++++|||. .-
T Consensus 2 ~~L~t~eql~~i~~~--S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeS 79 (105)
T PF11009_consen 2 KPLTTEEQLEEILEE--SKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHES 79 (105)
T ss_dssp -E--SHHHHHHHHHH-----SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----S
T ss_pred CccCCHHHHHHHHHh--cccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCC
Confidence 367899999999875 5678999999999999999999999999998877 999999998752 23678999996 79
Q ss_pred cEEEEEeCCeEEEEEeCC--CHHHH
Q 029545 158 PTFLFFQHGEKVAEIVGA--DVSRL 180 (191)
Q Consensus 158 Pt~~~~~~G~~~~~~~G~--~~~~l 180 (191)
|-++++++|+.+...... +.+.|
T Consensus 80 PQ~ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 80 PQVILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp SEEEEEETTEEEEEEEGGG-SHHHH
T ss_pred CcEEEEECCEEEEECccccCCHHhc
Confidence 999999999998765533 55555
No 157
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.39 E-value=2.2e-06 Score=66.81 Aligned_cols=79 Identities=16% Similarity=0.273 Sum_probs=56.5
Q ss_pred cCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEEC--CC----------------------------------
Q 029545 99 DDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDI--DQ---------------------------------- 142 (191)
Q Consensus 99 ~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~--d~---------------------------------- 142 (191)
.+++..++.|+.+.|++|+++.+.+.+ ...++.+..+.+ ..
T Consensus 75 ~~~~~~i~~f~D~~Cp~C~~~~~~l~~---~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~ 151 (197)
T cd03020 75 GNGKRVVYVFTDPDCPYCRKLEKELKP---NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPA 151 (197)
T ss_pred CCCCEEEEEEECCCCccHHHHHHHHhh---ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCc
Confidence 346789999999999999999999876 222333333221 11
Q ss_pred -------cchHHHHHhcCCCcccEEEEEeCCeEEEEEeCC-CHHHHHHHH
Q 029545 143 -------KGLESTLSKLNISAVPTFLFFQHGEKVAEIVGA-DVSRLKTTM 184 (191)
Q Consensus 143 -------~~~~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~i 184 (191)
.++..+++++||.++||++ +.+|+. +.|. +.++|.++|
T Consensus 152 ~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 152 ASCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred cccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence 0123778899999999998 788876 4687 778887764
No 158
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.34 E-value=8.7e-06 Score=54.58 Aligned_cols=74 Identities=14% Similarity=0.116 Sum_probs=55.8
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcc-hHHHHHhcCCCcccEEEEEeCCeEEEEEeCCCHHHHHHH
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG-LESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTT 183 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~-~~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~~~~~l~~~ 183 (191)
+..|..+||++|+..+..|++ .++.|-.+|++.+. ..+.....|...+|++++ ++. ...|.++++|.++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~---~~~Gf~~~~l~~~ 72 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL---SWSGFRPDMINRL 72 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE---EEecCCHHHHHHH
Confidence 678999999999999988865 37888889998752 222334457889999975 443 3568899999998
Q ss_pred HHHHh
Q 029545 184 MEQLY 188 (191)
Q Consensus 184 i~~~~ 188 (191)
+....
T Consensus 73 ~~~~~ 77 (81)
T PRK10329 73 HPAPH 77 (81)
T ss_pred HHhhh
Confidence 87654
No 159
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=98.32 E-value=1.5e-06 Score=67.75 Aligned_cols=107 Identities=19% Similarity=0.319 Sum_probs=87.0
Q ss_pred CCCCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCc
Q 029545 77 GPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISA 156 (191)
Q Consensus 77 ~~~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~ 156 (191)
.-..+.++.+..+|-+.+..-. +.-.++|..|-+.-..|-.+...+.-||.+||.++|+++-... .....+|...+
T Consensus 136 ~~~~V~El~~gkqfld~idke~-ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~---~gas~~F~~n~ 211 (273)
T KOG3171|consen 136 RYGFVYELETGKQFLDTIDKEL-KSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSN---TGASDRFSLNV 211 (273)
T ss_pred ccceEEEeccchhHHHHHhccc-ceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeecc---ccchhhhcccC
Confidence 3456889999999988886522 2346789999999999999999999999999999999997766 46678899999
Q ss_pred ccEEEEEeCCeEEEEEe------CC--CHHHHHHHHHHH
Q 029545 157 VPTFLFFQHGEKVAEIV------GA--DVSRLKTTMEQL 187 (191)
Q Consensus 157 ~Pt~~~~~~G~~~~~~~------G~--~~~~l~~~i~~~ 187 (191)
+||+++|++|+.+..++ |- ...+|+.|++..
T Consensus 212 lP~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 212 LPTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred CceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 99999999999887544 22 456677777654
No 160
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.31 E-value=2e-05 Score=59.97 Aligned_cols=139 Identities=11% Similarity=0.162 Sum_probs=94.7
Q ss_pred CCCCCCCccccccCCCCCCccCCCC--CcccccccccCCCCCCCCeEEecCHHHHHHHHhhhhcCCCc-EEEEEEcCCCh
Q 029545 38 TTVPKIPSFRNYIPASSSQSQSQML--PSLQFHRTLFSSPDGPSNILVIESGEEFNSSLGKVKDDSLP-AIFYFTAAWCG 114 (191)
Q Consensus 38 ~~v~~~p~~~~~~~~~~~~~~~~~~--p~~~~~~~~~s~~~~~~~~~~i~s~~~f~~~l~~~~~~~k~-vlV~F~a~wC~ 114 (191)
.++.. |.+.+|......+..+... ......+.. ....-+.+...|.+++..+.. .+.+ +++.|......
T Consensus 37 ~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI---~~~~~P~v~~~t~~n~~~~~~----~~~~~~~~~~~~~~~~ 108 (184)
T PF13848_consen 37 YGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFI---KKNSFPLVPELTPENFEKLFS----SPKPPVLILFDNKDNE 108 (184)
T ss_dssp CTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHH---HHHSSTSCEEESTTHHHHHHS----TSSEEEEEEEETTTHH
T ss_pred hCCCC-CcEEEeccCCCCceecccccCCHHHHHHHH---HHhccccccccchhhHHHHhc----CCCceEEEEEEcCCch
Confidence 66777 9999997633333322221 000000111 112333344456788888864 4545 78888777788
Q ss_pred hhcchhHHHHHHHhhCCC-cEEEEEECCCcchHHHHHhcCCC--cccEEEEEe--CCeEEEEEeCC-CHHHHHHHHHH
Q 029545 115 PCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNIS--AVPTFLFFQ--HGEKVAEIVGA-DVSRLKTTMEQ 186 (191)
Q Consensus 115 ~C~~~~p~~~~la~~~~~-v~~~~vd~d~~~~~~l~~~~~I~--~~Pt~~~~~--~G~~~~~~~G~-~~~~l~~~i~~ 186 (191)
....+...++++++++++ +.|+.+|++.. +.+++.+|+. .+|++++++ +++.-....|. +.+.|.+|+++
T Consensus 109 ~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~--~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 109 STEAFKKELQDIAKKFKGKINFVYVDADDF--PRLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp HHHHHHHHHHHHHHCTTTTSEEEEEETTTT--HHHHHHTTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCeEEEEEeehHHh--HHHHHHcCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 888999999999999988 99999999964 7899999998 999999997 44432223566 99999999874
No 161
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.31 E-value=7.7e-06 Score=66.56 Aligned_cols=87 Identities=10% Similarity=0.088 Sum_probs=67.0
Q ss_pred CCcEEEEEE-cCCChhhcchhHHHHHHHhhCC--CcEEEEEECCCc-----------------c---------hHHHHHh
Q 029545 101 SLPAIFYFT-AAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQK-----------------G---------LESTLSK 151 (191)
Q Consensus 101 ~k~vlV~F~-a~wC~~C~~~~p~~~~la~~~~--~v~~~~vd~d~~-----------------~---------~~~l~~~ 151 (191)
++++|+.|| +.||+.|....+.+.++.+++. ++.++.|.+|.. + ...+++.
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iaka 177 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKS 177 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHH
Confidence 567888887 8999999999999999988885 588888887752 0 1367889
Q ss_pred cCCC-----cccEEEEEe-CCeEEEEEe-----CCCHHHHHHHHHHH
Q 029545 152 LNIS-----AVPTFLFFQ-HGEKVAEIV-----GADVSRLKTTMEQL 187 (191)
Q Consensus 152 ~~I~-----~~Pt~~~~~-~G~~~~~~~-----G~~~~~l~~~i~~~ 187 (191)
||+. ..|+.++++ +|++..... |.+.+++.+.|+.+
T Consensus 178 yGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 178 FGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred cCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 9985 589888886 888777553 33778888777665
No 162
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.31 E-value=5.4e-06 Score=55.00 Aligned_cols=60 Identities=20% Similarity=0.380 Sum_probs=44.3
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcc---hHHHHHhcCCCcccEEEEEeCCeEE
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG---LESTLSKLNISAVPTFLFFQHGEKV 169 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~---~~~l~~~~~I~~~Pt~~~~~~G~~~ 169 (191)
++.|+++||++|+.+...++++... +.++.++.+.+. ...+.+..|+.++|+++ .+|+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~--~~g~~i 64 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK---PAVVELDQHEDGSEIQDYLQELTGQRTVPNVF--IGGKFI 64 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC---cEEEEEeCCCChHHHHHHHHHHhCCCCCCeEE--ECCEEE
Confidence 5789999999999999999987653 466677766541 12455667899999974 477654
No 163
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.31 E-value=3.1e-06 Score=53.12 Aligned_cols=58 Identities=19% Similarity=0.348 Sum_probs=44.7
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCc--chHHHHHhcCCCcccEEEEEeCCeEE
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK--GLESTLSKLNISAVPTFLFFQHGEKV 169 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~--~~~~l~~~~~I~~~Pt~~~~~~G~~~ 169 (191)
++.|+.+||++|+.....|++. ++.+-.+|++.+ ...++.+..+..++|++++ +|+.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-----~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-----GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-----CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEEC
Confidence 5789999999999999888543 588888898886 2234444459999999987 77653
No 164
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.30 E-value=6.8e-06 Score=73.07 Aligned_cols=79 Identities=19% Similarity=0.286 Sum_probs=67.0
Q ss_pred CcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCeEEEEEeCC-CHHHH
Q 029545 102 LPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGA-DVSRL 180 (191)
Q Consensus 102 k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~-~~~~l 180 (191)
..-+-.|.+++|++|......+++++...+++.+-.+|.... ++++++|+|.++|++++ +|+.+ +.|. +.++|
T Consensus 117 ~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~--~~~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~~~ 190 (517)
T PRK15317 117 DFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALF--QDEVEARNIMAVPTVFL--NGEEF--GQGRMTLEEI 190 (517)
T ss_pred CeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhC--HhHHHhcCCcccCEEEE--CCcEE--EecCCCHHHH
Confidence 344889999999999999999999999999999999988886 99999999999999976 67644 4577 77777
Q ss_pred HHHHHH
Q 029545 181 KTTMEQ 186 (191)
Q Consensus 181 ~~~i~~ 186 (191)
.+.+.+
T Consensus 191 ~~~~~~ 196 (517)
T PRK15317 191 LAKLDT 196 (517)
T ss_pred HHHHhc
Confidence 777654
No 165
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.26 E-value=6.5e-06 Score=53.70 Aligned_cols=70 Identities=20% Similarity=0.313 Sum_probs=50.5
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcc-hHHHHHhcCCCcccEEEEEeCCeEEEEEeCCCHHHHHHH
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG-LESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTT 183 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~-~~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~~~~~l~~~ 183 (191)
+..|..++|++|++.+..|++. ++.+-.+|++++. ..+.....|...+|++++ +|+. .+.|.+++.|.++
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~~--~~~G~~~~~~~~~ 71 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEH-----GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGDL--SWSGFRPDKLKAL 71 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCCc--EEeccCHHHHHhc
Confidence 3578889999999999999753 6788888988762 223333458889999865 4542 4567799888764
No 166
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.25 E-value=8.7e-06 Score=64.52 Aligned_cols=87 Identities=14% Similarity=0.206 Sum_probs=66.3
Q ss_pred CCc-EEEEEEcCCChhhcchhHHHHHHHhhCC--CcEEEEEECCCcc-------------------------hHHHHHhc
Q 029545 101 SLP-AIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQKG-------------------------LESTLSKL 152 (191)
Q Consensus 101 ~k~-vlV~F~a~wC~~C~~~~p~~~~la~~~~--~v~~~~vd~d~~~-------------------------~~~l~~~~ 152 (191)
++. +|+.|+++||+.|....+.+.++..++. ++.++.|++|... ...+++.|
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~y 107 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQL 107 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHc
Confidence 445 4689999999999999999999999884 5888888887621 12567888
Q ss_pred CCC-------cccEEEEEe-CCeEEEEEe-----CCCHHHHHHHHHHH
Q 029545 153 NIS-------AVPTFLFFQ-HGEKVAEIV-----GADVSRLKTTMEQL 187 (191)
Q Consensus 153 ~I~-------~~Pt~~~~~-~G~~~~~~~-----G~~~~~l~~~i~~~ 187 (191)
|+. .+|++++++ +|+...... |.+.+++.+.|+.+
T Consensus 108 g~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 108 GMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred CCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 873 579888886 787766543 33678888888765
No 167
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.24 E-value=1.1e-05 Score=64.04 Aligned_cols=87 Identities=9% Similarity=0.188 Sum_probs=65.0
Q ss_pred CCcEE-EEEEcCCChhhcchhHHHHHHHhhCC--CcEEEEEECCCcc-------------------------hHHHHHhc
Q 029545 101 SLPAI-FYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQKG-------------------------LESTLSKL 152 (191)
Q Consensus 101 ~k~vl-V~F~a~wC~~C~~~~p~~~~la~~~~--~v~~~~vd~d~~~-------------------------~~~l~~~~ 152 (191)
++.++ +.|+++||+.|....+.+.++..++. |+.++.|++|... ..++++.|
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~y 112 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRL 112 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHc
Confidence 45555 58899999999999999999999884 5889989887531 12566778
Q ss_pred CCC-------cccEEEEEe-CCeEEEEEe-----CCCHHHHHHHHHHH
Q 029545 153 NIS-------AVPTFLFFQ-HGEKVAEIV-----GADVSRLKTTMEQL 187 (191)
Q Consensus 153 ~I~-------~~Pt~~~~~-~G~~~~~~~-----G~~~~~l~~~i~~~ 187 (191)
|+. ..|+.++++ +|++..... |.+.+++...|+.+
T Consensus 113 gv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 113 GMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred CCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 863 368888886 787776544 33788888888765
No 168
>PRK13189 peroxiredoxin; Provisional
Probab=98.24 E-value=8.9e-06 Score=64.78 Aligned_cols=88 Identities=15% Similarity=0.167 Sum_probs=65.1
Q ss_pred CCc-EEEEEEcCCChhhcchhHHHHHHHhhCC--CcEEEEEECCCcc-------------------------hHHHHHhc
Q 029545 101 SLP-AIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQKG-------------------------LESTLSKL 152 (191)
Q Consensus 101 ~k~-vlV~F~a~wC~~C~~~~p~~~~la~~~~--~v~~~~vd~d~~~-------------------------~~~l~~~~ 152 (191)
++. +|+.|+++||+.|....+.+.++.+++. ++.++.|.+|... ...+++.|
T Consensus 35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~y 114 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKL 114 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHh
Confidence 554 4567889999999999999999988885 5888888877421 12567788
Q ss_pred CCC-------cccEEEEEe-CCeEEEEEe-----CCCHHHHHHHHHHHh
Q 029545 153 NIS-------AVPTFLFFQ-HGEKVAEIV-----GADVSRLKTTMEQLY 188 (191)
Q Consensus 153 ~I~-------~~Pt~~~~~-~G~~~~~~~-----G~~~~~l~~~i~~~~ 188 (191)
|+. .+|++++++ +|++..... |.+.+++...|+.+.
T Consensus 115 gv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 163 (222)
T PRK13189 115 GMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQ 163 (222)
T ss_pred CCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 875 468888886 887766544 337788888887653
No 169
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=98.22 E-value=7e-06 Score=66.56 Aligned_cols=85 Identities=19% Similarity=0.386 Sum_probs=60.4
Q ss_pred CCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEEC----------------CCc--------------------
Q 029545 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDI----------------DQK-------------------- 143 (191)
Q Consensus 100 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~----------------d~~-------------------- 143 (191)
+.+.+|+.|+-+.|++|+++.+.+.++.+.. ++.+..+.. .++
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~g-~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~ 194 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDSG-KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP 194 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhcC-ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence 4567899999999999999999988876542 344443321 000
Q ss_pred ------------chHHHHHhcCCCcccEEEEEeCCeEEEEEeCC-CHHHHHHHHH
Q 029545 144 ------------GLESTLSKLNISAVPTFLFFQHGEKVAEIVGA-DVSRLKTTME 185 (191)
Q Consensus 144 ------------~~~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~i~ 185 (191)
++..+.+++||+++||+++-+....+..+.|. ++++|.+++.
T Consensus 195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhC
Confidence 01246788999999999987632345567898 8888888774
No 170
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.21 E-value=1.3e-05 Score=53.32 Aligned_cols=61 Identities=16% Similarity=0.202 Sum_probs=45.8
Q ss_pred CcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcc-hHHHHHhcCCCcccEEEEEeCCeEE
Q 029545 102 LPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG-LESTLSKLNISAVPTFLFFQHGEKV 169 (191)
Q Consensus 102 k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~-~~~l~~~~~I~~~Pt~~~~~~G~~~ 169 (191)
+.-|+.|+.+||++|++.+..|++. ++.+-.+|++++. ...+....+...+|.+++ +|+.+
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~i 68 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKLI 68 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEEE
Confidence 3458899999999999999999753 5677778887652 234555678899999964 77654
No 171
>PHA03050 glutaredoxin; Provisional
Probab=98.20 E-value=3.2e-06 Score=59.85 Aligned_cols=61 Identities=16% Similarity=0.210 Sum_probs=43.0
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCc--c---hHHHHHhcCCCcccEEEEEeCCeEE
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK--G---LESTLSKLNISAVPTFLFFQHGEKV 169 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~--~---~~~l~~~~~I~~~Pt~~~~~~G~~~ 169 (191)
|+.|..+|||+|++....|++..-+.+. +-.+|+++. . ...+.+.-|.+.+|++++ +|+.+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~~--~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~i 80 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRGA--YEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTSI 80 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcCC--cEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEEE
Confidence 8889999999999999999877544433 444555541 1 134555568889999965 77755
No 172
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.19 E-value=1.9e-05 Score=61.92 Aligned_cols=86 Identities=10% Similarity=0.148 Sum_probs=63.5
Q ss_pred cEEEEEEcCCChhhcchhHHHHHHHhhCC--CcEEEEEECCCcc-------------------------hHHHHHhcCCC
Q 029545 103 PAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQKG-------------------------LESTLSKLNIS 155 (191)
Q Consensus 103 ~vlV~F~a~wC~~C~~~~p~~~~la~~~~--~v~~~~vd~d~~~-------------------------~~~l~~~~~I~ 155 (191)
.+|+.|+++||+.|....+.+.++.+++. ++.++.|++|... ...+++.||+.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence 45668999999999999999999998885 5888888877521 13667888875
Q ss_pred ----c----ccEEEEEe-CCeEEEEEeC-----CCHHHHHHHHHHHh
Q 029545 156 ----A----VPTFLFFQ-HGEKVAEIVG-----ADVSRLKTTMEQLY 188 (191)
Q Consensus 156 ----~----~Pt~~~~~-~G~~~~~~~G-----~~~~~l~~~i~~~~ 188 (191)
+ +|++++++ +|+......+ .+.+++.+.|+++.
T Consensus 108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq 154 (203)
T cd03016 108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQ 154 (203)
T ss_pred cccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 2 34566675 8877766554 36778888887653
No 173
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.18 E-value=2.4e-05 Score=58.38 Aligned_cols=82 Identities=23% Similarity=0.343 Sum_probs=63.1
Q ss_pred CCCcEEEEEEcCCChhhcchhHHHHHHHhhC--CC-cEEEEEECCCcch-------------------------------
Q 029545 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKH--PH-VTTYKIDIDQKGL------------------------------- 145 (191)
Q Consensus 100 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~--~~-v~~~~vd~d~~~~------------------------------- 145 (191)
+.+++|+.|+..-|++|.++.+.+.++.+++ ++ +.+...++-....
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE 90 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 3578899999999999999999999988887 54 8887776522100
Q ss_pred -----------------------------------HHHHHhcCCCcccEEEEEeCCeEEEEEeCC-CHHHHHHHHHH
Q 029545 146 -----------------------------------ESTLSKLNISAVPTFLFFQHGEKVAEIVGA-DVSRLKTTMEQ 186 (191)
Q Consensus 146 -----------------------------------~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~i~~ 186 (191)
...+.+++|.++||+++ ||+.+ .|. +.++|.++|++
T Consensus 91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~~---~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKYV---VGPYTIEELKELIDK 162 (162)
T ss_dssp STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCEE---ETTTSHHHHHHHHHH
T ss_pred ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEEe---CCCCCHHHHHHHHcC
Confidence 04457889999999998 99875 566 99999999975
No 174
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.15 E-value=2.7e-05 Score=60.85 Aligned_cols=87 Identities=10% Similarity=0.130 Sum_probs=64.5
Q ss_pred CCcEEEEEEc-CCChhhcchhHHHHHHHhhCC--CcEEEEEECCCcc--------------------------hHHHHHh
Q 029545 101 SLPAIFYFTA-AWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQKG--------------------------LESTLSK 151 (191)
Q Consensus 101 ~k~vlV~F~a-~wC~~C~~~~p~~~~la~~~~--~v~~~~vd~d~~~--------------------------~~~l~~~ 151 (191)
++.++|.||+ .||+.|....+.+.++.+++. ++.++.|++|... ..++++.
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ 115 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARS 115 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHHH
Confidence 6789999995 889999998899999988886 5888888877431 1257788
Q ss_pred cCCC------cccEEEEEe-CCeEEEEEeCC-----CHHHHHHHHHHH
Q 029545 152 LNIS------AVPTFLFFQ-HGEKVAEIVGA-----DVSRLKTTMEQL 187 (191)
Q Consensus 152 ~~I~------~~Pt~~~~~-~G~~~~~~~G~-----~~~~l~~~i~~~ 187 (191)
||+. .+|+.++++ +|+......+. +.+++.+.|+.+
T Consensus 116 ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 116 YGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred cCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 8885 468888886 88877765552 555666665544
No 175
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=98.13 E-value=2.1e-05 Score=59.64 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=31.8
Q ss_pred CCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC-cEEE
Q 029545 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTY 136 (191)
Q Consensus 100 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~-v~~~ 136 (191)
.+++.|+.|+...|++|+.+.+.+.++.+++++ +.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFE 51 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEE
Confidence 467899999999999999999999999888865 5554
No 176
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.11 E-value=5.6e-05 Score=63.05 Aligned_cols=105 Identities=17% Similarity=0.247 Sum_probs=72.7
Q ss_pred CCCCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchh------HHHHHHHhh-C--CCcEEEEEECCCcchHH
Q 029545 77 GPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIW------PVIGELSAK-H--PHVTTYKIDIDQKGLES 147 (191)
Q Consensus 77 ~~~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~------p~~~~la~~-~--~~v~~~~vd~d~~~~~~ 147 (191)
+...++.+ |..+|++++++ .+..+|+|+.+--. -+... ..+-+++.+ . +++.|+.||..++ ..
T Consensus 32 GkDRVi~L-neKNfk~~lKk----yd~l~l~yh~p~~~-dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd--~k 103 (383)
T PF01216_consen 32 GKDRVIDL-NEKNFKRALKK----YDVLVLYYHEPVES-DKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKD--AK 103 (383)
T ss_dssp SS--CEEE--TTTHHHHHHH-----SEEEEEEE--STS-SHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTT--HH
T ss_pred CccceEEc-chhHHHHHHHh----hcEEEEEEecCCcc-CHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHH--HH
Confidence 44556555 67999999864 56888899988633 22222 222334333 2 4699999999998 89
Q ss_pred HHHhcCCCcccEEEEEeCCeEEEEEeCC-CHHHHHHHHHHHhcC
Q 029545 148 TLSKLNISAVPTFLFFQHGEKVAEIVGA-DVSRLKTTMEQLYKK 190 (191)
Q Consensus 148 l~~~~~I~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~i~~~~~~ 190 (191)
+++++|+...+++.+|++|+.+.. .|. +++.|.+||-.+++.
T Consensus 104 lAKKLgv~E~~SiyVfkd~~~IEy-dG~~saDtLVeFl~dl~ed 146 (383)
T PF01216_consen 104 LAKKLGVEEEGSIYVFKDGEVIEY-DGERSADTLVEFLLDLLED 146 (383)
T ss_dssp HHHHHT--STTEEEEEETTEEEEE--S--SHHHHHHHHHHHHSS
T ss_pred HHHhcCccccCcEEEEECCcEEEe-cCccCHHHHHHHHHHhccc
Confidence 999999999999999999998865 587 999999999988753
No 177
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=98.11 E-value=3e-05 Score=60.97 Aligned_cols=40 Identities=20% Similarity=0.376 Sum_probs=31.6
Q ss_pred CCcEEEEEEcCCChhhcchhHHH---HHHHhhCCC-cEEEEEEC
Q 029545 101 SLPAIFYFTAAWCGPCKFIWPVI---GELSAKHPH-VTTYKIDI 140 (191)
Q Consensus 101 ~k~vlV~F~a~wC~~C~~~~p~~---~~la~~~~~-v~~~~vd~ 140 (191)
+++.||+|+.-.|+||.++.+.+ +.+.+.+++ +.+..+.+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence 35679999999999999999876 788888874 66655443
No 178
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.09 E-value=3.8e-05 Score=49.92 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=48.4
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcc-hHHHHHhcCCCcccEEEEEeCCeEEEEEeCCCHHHHHHH
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG-LESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTT 183 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~-~~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~~~~~l~~~ 183 (191)
++.|..+||++|.+.+..|++. ++.+..+|++.+. ...+....|...+|.++ -+|+.+ | ..++|.++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-----~i~~~~~~v~~~~~~~~~~~~~g~~~vP~if--i~g~~i----g-g~~~l~~~ 70 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-----GISYEEIPLGKDITGRSLRAVTGAMTVPQVF--IDGELI----G-GSDDLEKY 70 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEEECCCChhHHHHHHHhCCCCcCeEE--ECCEEE----e-CHHHHHHH
Confidence 6789999999999998888753 5777788887753 23344446889999985 367654 2 35556655
Q ss_pred H
Q 029545 184 M 184 (191)
Q Consensus 184 i 184 (191)
+
T Consensus 71 l 71 (72)
T cd03029 71 F 71 (72)
T ss_pred h
Confidence 4
No 179
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.08 E-value=4e-05 Score=68.19 Aligned_cols=80 Identities=19% Similarity=0.346 Sum_probs=66.6
Q ss_pred CcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCeEEEEEeCC-CHHHH
Q 029545 102 LPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGA-DVSRL 180 (191)
Q Consensus 102 k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~-~~~~l 180 (191)
..-+-.|.++.|++|......+++++...+++..-.+|.... ++++++|+|.++|++++ +|+.+ +.|. +.+++
T Consensus 118 ~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~--~~~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~~~ 191 (515)
T TIGR03140 118 PLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALF--QDEVEALGIQGVPAVFL--NGEEF--HNGRMDLAEL 191 (515)
T ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhC--HHHHHhcCCcccCEEEE--CCcEE--EecCCCHHHH
Confidence 345889999999999999999999999999988888888876 99999999999999986 67644 4577 77777
Q ss_pred HHHHHHH
Q 029545 181 KTTMEQL 187 (191)
Q Consensus 181 ~~~i~~~ 187 (191)
.+.+.+.
T Consensus 192 ~~~l~~~ 198 (515)
T TIGR03140 192 LEKLEET 198 (515)
T ss_pred HHHHhhc
Confidence 6666543
No 180
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.07 E-value=2.1e-05 Score=50.09 Aligned_cols=59 Identities=24% Similarity=0.378 Sum_probs=44.1
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcc--hHHHHHhcCCCcccEEEEEeCCeEEE
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG--LESTLSKLNISAVPTFLFFQHGEKVA 170 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~--~~~l~~~~~I~~~Pt~~~~~~G~~~~ 170 (191)
++.|+++||++|+.....+++.. +.+..+|++.+. ...+.+..+...+|++++ +|+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~--~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-----IEFEEIDILEDGELREELKELSGWPTVPQIFI--NGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 57899999999999999998663 677788888763 234455567788998753 776554
No 181
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.01 E-value=1.1e-05 Score=56.20 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=40.4
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcc-hH----HHHHhcCCCcccEEEEEeCCeEE
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG-LE----STLSKLNISAVPTFLFFQHGEKV 169 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~-~~----~l~~~~~I~~~Pt~~~~~~G~~~ 169 (191)
++.|..+||++|++.+..|++. ++.+..+|+|.++ .. .+.+..|...+|.++ -+|+.+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~-----~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vf--i~g~~i 72 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL-----GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVF--VGGKLV 72 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEE--ECCEEE
Confidence 7789999999999999988765 4445566776542 12 233444778999984 377655
No 182
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.98 E-value=6.2e-05 Score=52.99 Aligned_cols=86 Identities=15% Similarity=0.231 Sum_probs=61.6
Q ss_pred CHHHHHHHHhhhhcCCCcEEEEEEcCCChhh---cchhHHHHHHHhhCCC-cEEEEEECCCcchHHHHHhcCCCcccEEE
Q 029545 86 SGEEFNSSLGKVKDDSLPAIFYFTAAWCGPC---KFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVPTFL 161 (191)
Q Consensus 86 s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C---~~~~p~~~~la~~~~~-v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~ 161 (191)
+.+++++++.. +.. .|.|++..|.-| ....=.+-|+.+.+++ +..+.+.-..+ ..+..+||+...|+++
T Consensus 15 d~~~ld~~l~~----~~~-~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e--~~L~~r~gv~~~PaLv 87 (107)
T PF07449_consen 15 DADTLDAFLAA----PGD-AVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAE--RALAARFGVRRWPALV 87 (107)
T ss_dssp -CCCHHHHHHC----CSC-EEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHH--HHHHHHHT-TSSSEEE
T ss_pred chhhHHHHHhC----CCc-EEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhH--HHHHHHhCCccCCeEE
Confidence 45778887753 334 455566555444 4444577899999988 66666673343 8999999999999999
Q ss_pred EEeCCeEEEEEeCC-CHH
Q 029545 162 FFQHGEKVAEIVGA-DVS 178 (191)
Q Consensus 162 ~~~~G~~~~~~~G~-~~~ 178 (191)
|+++|+.+..+.|. +-+
T Consensus 88 f~R~g~~lG~i~gi~dW~ 105 (107)
T PF07449_consen 88 FFRDGRYLGAIEGIRDWA 105 (107)
T ss_dssp EEETTEEEEEEESSSTHH
T ss_pred EEECCEEEEEecCeeccc
Confidence 99999999999997 543
No 183
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.92 E-value=0.00017 Score=49.25 Aligned_cols=92 Identities=14% Similarity=0.102 Sum_probs=68.4
Q ss_pred EEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCC-CcEEEEEECCCcchHHHHHhcCCCcccEE
Q 029545 82 LVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQKGLESTLSKLNISAVPTF 160 (191)
Q Consensus 82 ~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~-~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~ 160 (191)
..+.+.+++++++ ..+++++|-|+.++|+ .....+.++|..+. ++.|+.+. . .++.+++++. .|++
T Consensus 2 ~~i~s~~~l~~~~----~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~--~---~~~~~~~~~~-~~~i 68 (97)
T cd02981 2 KELTSKEELEKFL----DKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS--D---KEVAKKLKVK-PGSV 68 (97)
T ss_pred eecCCHHHHHHHh----ccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC--h---HHHHHHcCCC-CCce
Confidence 4566777788765 3577899999999987 46778888998886 48886655 2 5777778775 5899
Q ss_pred EEEeCC-eEEEEEeCC-CHHHHHHHHHH
Q 029545 161 LFFQHG-EKVAEIVGA-DVSRLKTTMEQ 186 (191)
Q Consensus 161 ~~~~~G-~~~~~~~G~-~~~~l~~~i~~ 186 (191)
++|+.. +....+.|. +.++|.+||..
T Consensus 69 ~l~~~~~~~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 69 VLFKPFEEEPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred EEeCCcccCCccCCCCCCHHHHHHHHHh
Confidence 999754 444456776 78999999864
No 184
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.87 E-value=0.0001 Score=48.04 Aligned_cols=59 Identities=19% Similarity=0.287 Sum_probs=44.9
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcc--hHHHHHhcCCCcccEEEEEeCCeEEE
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG--LESTLSKLNISAVPTFLFFQHGEKVA 170 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~--~~~l~~~~~I~~~Pt~~~~~~G~~~~ 170 (191)
++.|+.+||++|++....|++. ++.+-.+|++++. ..++.+..+-..+|++++ +|+.+.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-----gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~~iG 63 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-----GLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEKLVG 63 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 6789999999999999999863 5777888888752 235566667788999865 776553
No 185
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.87 E-value=0.0001 Score=47.94 Aligned_cols=58 Identities=17% Similarity=0.248 Sum_probs=42.5
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCc--chHHHHHhcCCC-cccEEEEEeCCeEE
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK--GLESTLSKLNIS-AVPTFLFFQHGEKV 169 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~--~~~~l~~~~~I~-~~Pt~~~~~~G~~~ 169 (191)
++.|+.+||++|...+..|++. ++.+-.+|++.+ ...++.+..+.. ++|++++ +|+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i--~g~~i 62 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI--GDVHI 62 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE--CCEEE
Confidence 5789999999999999988763 577778888875 123344556776 8998854 77654
No 186
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.83 E-value=0.00063 Score=49.67 Aligned_cols=104 Identities=13% Similarity=0.228 Sum_probs=74.7
Q ss_pred CCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCC---Chh-h-cchhHHHHHHHhhCCC--cEEEEEECCCcchHHHHHh
Q 029545 79 SNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAW---CGP-C-KFIWPVIGELSAKHPH--VTTYKIDIDQKGLESTLSK 151 (191)
Q Consensus 79 ~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~w---C~~-C-~~~~p~~~~la~~~~~--v~~~~vd~d~~~~~~l~~~ 151 (191)
..++++++.+.+++.-. +++.-+|-| -|. |.. + ......+.++|+++++ +.|+++|.+.. ..+.+.
T Consensus 2 ~~~~~l~~~~~~~~~C~----~~~~C~i~~-l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~--~~~~~~ 74 (130)
T cd02983 2 PEIIELTSEDVFEETCE----EKQLCIIAF-LPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQ--LDLEEA 74 (130)
T ss_pred CceEEecCHHHHHhhcc----CCCeEEEEE-cCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCccc--HHHHHH
Confidence 46788888887776542 233444444 442 322 3 3567788999999986 79999999997 569999
Q ss_pred cCCC--cccEEEEEeCCeEEEE-EeCC-CHHHHHHHHHHHhc
Q 029545 152 LNIS--AVPTFLFFQHGEKVAE-IVGA-DVSRLKTTMEQLYK 189 (191)
Q Consensus 152 ~~I~--~~Pt~~~~~~G~~~~~-~~G~-~~~~l~~~i~~~~~ 189 (191)
||+. ++|+++++...+.... +.|. +.+.|.+|+++++.
T Consensus 75 fgl~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~ 116 (130)
T cd02983 75 LNIGGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSY 116 (130)
T ss_pred cCCCccCCCEEEEEecccCccccccCccCHHHHHHHHHHHHc
Confidence 9995 5999999864332222 4566 99999999999875
No 187
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.81 E-value=7.7e-05 Score=49.25 Aligned_cols=58 Identities=17% Similarity=0.301 Sum_probs=42.0
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCc--chHHHHHhcCCCcccEEEEEeCCeEE
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK--GLESTLSKLNISAVPTFLFFQHGEKV 169 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~--~~~~l~~~~~I~~~Pt~~~~~~G~~~ 169 (191)
++.|+.+||++|.+....+++. ++.+-.+|++.+ ...++.+..+...+|++++ +|+.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i--~g~~i 60 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-----GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI--GDVHV 60 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-----CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 4678999999999999999864 456666777665 2234455568889999854 67644
No 188
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.79 E-value=0.00016 Score=56.03 Aligned_cols=104 Identities=17% Similarity=0.321 Sum_probs=79.8
Q ss_pred CCCCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCc
Q 029545 77 GPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISA 156 (191)
Q Consensus 77 ~~~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~ 156 (191)
.-..+.+| |..+|.+.+..+ ..+-.|||..|...-+.|.-+...++.++.+||.++|+++-.+.. ...|-=..
T Consensus 89 kfG~V~~I-Sg~dyv~EVT~A-s~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~c-----IpNYPe~n 161 (240)
T KOG3170|consen 89 KFGEVFPI-SGPDYVKEVTKA-SEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTC-----IPNYPESN 161 (240)
T ss_pred cccceeec-cchHHHHHHHhc-cCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccc-----cCCCcccC
Confidence 34556666 557777667655 346678899999999999999999999999999999999876654 23355568
Q ss_pred ccEEEEEeCCeEEEEEeC------C--CHHHHHHHHHHH
Q 029545 157 VPTFLFFQHGEKVAEIVG------A--DVSRLKTTMEQL 187 (191)
Q Consensus 157 ~Pt~~~~~~G~~~~~~~G------~--~~~~l~~~i~~~ 187 (191)
.||+++|..|.....+.| . +.++++.++-+.
T Consensus 162 lPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 162 LPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQA 200 (240)
T ss_pred CCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence 999999999987765553 3 678888777553
No 189
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.79 E-value=0.00035 Score=46.63 Aligned_cols=75 Identities=20% Similarity=0.368 Sum_probs=58.1
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEeCC----eEEEEEeCC-CHHH
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHG----EKVAEIVGA-DVSR 179 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G----~~~~~~~G~-~~~~ 179 (191)
|+.|..+.|.-|......+.++.... ++.+-.||++.+ +++..+|+. .+|.+.+ +| +......+. +.+.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~-~~~l~~vDI~~d--~~l~~~Y~~-~IPVl~~--~~~~~~~~~~~~~~~~d~~~ 75 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF-PFELEEVDIDED--PELFEKYGY-RIPVLHI--DGIRQFKEQEELKWRFDEEQ 75 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS-TCEEEEEETTTT--HHHHHHSCT-STSEEEE--TT-GGGCTSEEEESSB-HHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc-CceEEEEECCCC--HHHHHHhcC-CCCEEEE--cCcccccccceeCCCCCHHH
Confidence 78899999999999999999876655 489999999987 789999996 8999775 44 112233465 9999
Q ss_pred HHHHHH
Q 029545 180 LKTTME 185 (191)
Q Consensus 180 l~~~i~ 185 (191)
|.++|+
T Consensus 76 L~~~L~ 81 (81)
T PF05768_consen 76 LRAWLE 81 (81)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 999985
No 190
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.0003 Score=46.99 Aligned_cols=68 Identities=22% Similarity=0.363 Sum_probs=47.7
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcch---HHHHHhc-CCCcccEEEEEeCCeEEEEEeCC-CHHH
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGL---ESTLSKL-NISAVPTFLFFQHGEKVAEIVGA-DVSR 179 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~---~~l~~~~-~I~~~Pt~~~~~~G~~~~~~~G~-~~~~ 179 (191)
++.|..+|||+|++.+..|++. ++.+..++++.++. .+..++. |.+.+|.+++ +|+.+ .|. +.++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~-----g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~~i---gg~~d~~~ 72 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK-----GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGKHV---GGCDDLDA 72 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc-----CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCEEE---eCcccHHH
Confidence 6789999999999999988833 57777777776531 2444444 7899999886 66633 243 6666
Q ss_pred HHH
Q 029545 180 LKT 182 (191)
Q Consensus 180 l~~ 182 (191)
+..
T Consensus 73 ~~~ 75 (80)
T COG0695 73 LEA 75 (80)
T ss_pred HHh
Confidence 554
No 191
>PTZ00062 glutaredoxin; Provisional
Probab=97.72 E-value=6.4e-05 Score=59.06 Aligned_cols=115 Identities=13% Similarity=0.127 Sum_probs=64.1
Q ss_pred CCCCCCCccccccCCCCCCccCCCCCcccccccccCCCCCCCCeEEecCHHHHHHHHhhhhcCCCcEEEEEEc-----CC
Q 029545 38 TTVPKIPSFRNYIPASSSQSQSQMLPSLQFHRTLFSSPDGPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTA-----AW 112 (191)
Q Consensus 38 ~~v~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~~~~~~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a-----~w 112 (191)
.+|.+.|+|..|..+....+-....| ......+..-... .+.++..+.+++..++++ ++| |.. ||
T Consensus 58 ~~V~~vPtfv~~~~g~~i~r~~G~~~-~~~~~~~~~~~~~-------~~~~~~~~~v~~li~~~~-Vvv-f~Kg~~~~p~ 127 (204)
T PTZ00062 58 DANNEYGVFEFYQNSQLINSLEGCNT-STLVSFIRGWAQK-------GSSEDTVEKIERLIRNHK-ILL-FMKGSKTFPF 127 (204)
T ss_pred cCcccceEEEEEECCEEEeeeeCCCH-HHHHHHHHHHcCC-------CCHHHHHHHHHHHHhcCC-EEE-EEccCCCCCC
Confidence 89999999999987655433221111 1111111100000 112334444544444544 333 433 79
Q ss_pred ChhhcchhHHHHHHHhhCCCcEEEEEECCCcc-h-HHHHHhcCCCcccEEEEEeCCeEE
Q 029545 113 CGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG-L-ESTLSKLNISAVPTFLFFQHGEKV 169 (191)
Q Consensus 113 C~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~-~-~~l~~~~~I~~~Pt~~~~~~G~~~ 169 (191)
|++|++....|++. ++.+..+|++.++ . ..+.+..|-..+|.+.+ +|+.+
T Consensus 128 C~~C~~~k~~L~~~-----~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI--~G~~I 179 (204)
T PTZ00062 128 CRFSNAVVNMLNSS-----GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV--NGELI 179 (204)
T ss_pred ChhHHHHHHHHHHc-----CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 99999998888754 5677788887652 1 22333346678888775 78765
No 192
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.71 E-value=0.00055 Score=47.36 Aligned_cols=52 Identities=15% Similarity=0.185 Sum_probs=37.5
Q ss_pred CCChhhcchhHHHHHHHhhCCCcEEEEEECCCcc--hHHHHHhcCCCcccEEEEEeCCeEE
Q 029545 111 AWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG--LESTLSKLNISAVPTFLFFQHGEKV 169 (191)
Q Consensus 111 ~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~--~~~l~~~~~I~~~Pt~~~~~~G~~~ 169 (191)
+||++|++....|++. ++.+..+|++.+. ...+.+..|-..+|.+.+ +|+.+
T Consensus 25 ~~Cp~C~~ak~lL~~~-----~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi--~g~~i 78 (97)
T TIGR00365 25 PQCGFSARAVQILKAC-----GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV--KGEFV 78 (97)
T ss_pred CCCchHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE--CCEEE
Confidence 8999999999999775 4667788886541 123445567788998864 77654
No 193
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.66 E-value=0.00024 Score=47.64 Aligned_cols=60 Identities=20% Similarity=0.253 Sum_probs=44.2
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCC-cEEEEEECCCcc------------------------------hHHHHHhcC
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKG------------------------------LESTLSKLN 153 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~-v~~~~vd~d~~~------------------------------~~~l~~~~~ 153 (191)
++.|+.+.|++|..+.+.++++....++ +.+..+.+.-.. ...+..++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 4689999999999999999998755544 665555443211 124567899
Q ss_pred CCcccEEEEEe
Q 029545 154 ISAVPTFLFFQ 164 (191)
Q Consensus 154 I~~~Pt~~~~~ 164 (191)
+.++||+++.+
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999999843
No 194
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.64 E-value=0.00058 Score=61.39 Aligned_cols=98 Identities=13% Similarity=0.255 Sum_probs=77.2
Q ss_pred HHHHHHHHhhhhcCCCc-EEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEe-
Q 029545 87 GEEFNSSLGKVKDDSLP-AIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQ- 164 (191)
Q Consensus 87 ~~~f~~~l~~~~~~~k~-vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~- 164 (191)
.+++++.+.. -.++ .++.|+.+.|..|..+...+++++..-+.+.+...|...+ .+++++|+|...|++.+++
T Consensus 354 ~~~l~~~~~~---l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~--~~~~~~~~v~~~P~~~i~~~ 428 (555)
T TIGR03143 354 RQQLVGIFGR---LENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEE--PESETLPKITKLPTVALLDD 428 (555)
T ss_pred HHHHHHHHHh---cCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccc--hhhHhhcCCCcCCEEEEEeC
Confidence 3456666653 3345 5778888899999999999999997776688888887776 7899999999999999995
Q ss_pred CCeE-EEEEeCC-CHHHHHHHHHHHhc
Q 029545 165 HGEK-VAEIVGA-DVSRLKTTMEQLYK 189 (191)
Q Consensus 165 ~G~~-~~~~~G~-~~~~l~~~i~~~~~ 189 (191)
+|+. --++.|. .-.+|..+|..++.
T Consensus 429 ~~~~~~i~f~g~P~G~Ef~s~i~~i~~ 455 (555)
T TIGR03143 429 DGNYTGLKFHGVPSGHELNSFILALYN 455 (555)
T ss_pred CCcccceEEEecCccHhHHHHHHHHHH
Confidence 6543 3577888 88899999888764
No 195
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.63 E-value=0.00053 Score=47.46 Aligned_cols=98 Identities=11% Similarity=0.151 Sum_probs=73.9
Q ss_pred EecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC-cEEEEEECCCcchHHHHHhcCCC----cc
Q 029545 83 VIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNIS----AV 157 (191)
Q Consensus 83 ~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~-v~~~~vd~d~~~~~~l~~~~~I~----~~ 157 (191)
.|.+..+|.+++.. ...|+|.|..+--..- .....+.++|...+| -.++.|||...+...+|+++.|. --
T Consensus 5 ~i~d~KdfKKLLRT----r~NVLvLy~ks~k~a~-~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~ 79 (112)
T cd03067 5 DISDHKDFKKLLRT----RNNVLVLYSKSAKSAE-ALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPK 79 (112)
T ss_pred cccchHHHHHHHhh----cCcEEEEEecchhhHH-HHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCC
Confidence 56677889998863 4567777777653333 344477888888887 78999999987789999999998 55
Q ss_pred c-EEEEEeCCeEEEEEeCC-CHHHHHHHHH
Q 029545 158 P-TFLFFQHGEKVAEIVGA-DVSRLKTTME 185 (191)
Q Consensus 158 P-t~~~~~~G~~~~~~~G~-~~~~l~~~i~ 185 (191)
| ++.-|++|..-..|... +...+..|++
T Consensus 80 ~~~LkHYKdG~fHkdYdR~~t~kSmv~Flr 109 (112)
T cd03067 80 PVELKHYKDGDFHTEYNRQLTFKSMVAFLR 109 (112)
T ss_pred cchhhcccCCCccccccchhhHHHHHHHhh
Confidence 5 45667899888777766 7777887775
No 196
>PRK10638 glutaredoxin 3; Provisional
Probab=97.63 E-value=0.00029 Score=47.06 Aligned_cols=58 Identities=19% Similarity=0.331 Sum_probs=43.0
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcc--hHHHHHhcCCCcccEEEEEeCCeEE
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG--LESTLSKLNISAVPTFLFFQHGEKV 169 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~--~~~l~~~~~I~~~Pt~~~~~~G~~~ 169 (191)
++.|..+||++|++....+++. ++.+..+|++.+. ..++.+..+...+|++++ +|+.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~~i 63 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQHI 63 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 6678899999999999998864 5666778887652 234556668889998854 67655
No 197
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00058 Score=56.27 Aligned_cols=108 Identities=17% Similarity=0.307 Sum_probs=80.0
Q ss_pred CCCCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcC----CChhhcchhHHHHHHHhhCC------C---cEEEEEECCCc
Q 029545 77 GPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAA----WCGPCKFIWPVIGELSAKHP------H---VTTYKIDIDQK 143 (191)
Q Consensus 77 ~~~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~----wC~~C~~~~p~~~~la~~~~------~---v~~~~vd~d~~ 143 (191)
...+++.. +++.|..++. ..-.+-.++|.|.|. .|.-|+....++.-+++.+. + +-|..||.|+.
T Consensus 38 s~~~VI~~-n~d~~~~~v~-~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~ 115 (331)
T KOG2603|consen 38 SESGVIRM-NDDKFSKFVR-PPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDES 115 (331)
T ss_pred CCCCeEEe-cCcchhhhcc-CCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEecccc
Confidence 45677777 4588999987 334445667888884 79999999999998888542 1 66888898886
Q ss_pred chHHHHHhcCCCcccEEEEEe--CCeEEE------EEeCCCHHHHHHHHHHHh
Q 029545 144 GLESTLSKLNISAVPTFLFFQ--HGEKVA------EIVGADVSRLKTTMEQLY 188 (191)
Q Consensus 144 ~~~~l~~~~~I~~~Pt~~~~~--~G~~~~------~~~G~~~~~l~~~i~~~~ 188 (191)
+++-+.+++..+|++++|. .|.+.. .-.|..+|.+.+|+++..
T Consensus 116 --p~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~t 166 (331)
T KOG2603|consen 116 --PQVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRT 166 (331)
T ss_pred --HHHHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhh
Confidence 9999999999999999994 332221 112336788888887754
No 198
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.55 E-value=0.00096 Score=47.32 Aligned_cols=96 Identities=13% Similarity=0.107 Sum_probs=69.5
Q ss_pred CHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhh---CCC-cEEEEEECCCcchHHHHHhcCCCc--ccE
Q 029545 86 SGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAK---HPH-VTTYKIDIDQKGLESTLSKLNISA--VPT 159 (191)
Q Consensus 86 s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~---~~~-v~~~~vd~d~~~~~~l~~~~~I~~--~Pt 159 (191)
+.++.+... +++.+..+.|+. -..-..+...+.+++++ +++ +.|+.+|.+.. ....+.||+.. +|.
T Consensus 5 t~e~~~~~~----~~~~~~~~l~f~--~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~--~~~~~~fgl~~~~~P~ 76 (111)
T cd03072 5 TFENAEELT----EEGLPFLILFHD--KDDLESLKEFKQAVARQLISEKGAINFLTADGDKF--RHPLLHLGKTPADLPV 76 (111)
T ss_pred ccccHHHHh----cCCCCeEEEEec--chHHHHHHHHHHHHHHHHHhcCceEEEEEEechHh--hhHHHHcCCCHhHCCE
Confidence 445565554 346666666772 22336678889999999 987 99999999997 44889999997 999
Q ss_pred EEEEeCCe-EEEE-EeCC-CHHHHHHHHHHHhc
Q 029545 160 FLFFQHGE-KVAE-IVGA-DVSRLKTTMEQLYK 189 (191)
Q Consensus 160 ~~~~~~G~-~~~~-~~G~-~~~~l~~~i~~~~~ 189 (191)
+.+..... .... ..+. +++.|.+|+++++.
T Consensus 77 i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 77 IAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred EEEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 99886422 1111 3355 89999999999875
No 199
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.23 E-value=0.0016 Score=44.32 Aligned_cols=52 Identities=21% Similarity=0.285 Sum_probs=36.9
Q ss_pred CCChhhcchhHHHHHHHhhCCCcEEEEEECCCcc--hHHHHHhcCCCcccEEEEEeCCeEE
Q 029545 111 AWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG--LESTLSKLNISAVPTFLFFQHGEKV 169 (191)
Q Consensus 111 ~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~--~~~l~~~~~I~~~Pt~~~~~~G~~~ 169 (191)
+||++|++.+..|++. ++.+..+|++.+. ...+.+..|-..+|.++ .+|+.+
T Consensus 21 ~~Cp~C~~ak~~L~~~-----~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vf--i~g~~i 74 (90)
T cd03028 21 PRCGFSRKVVQILNQL-----GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLY--VNGELV 74 (90)
T ss_pred CCCcHHHHHHHHHHHc-----CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEE--ECCEEE
Confidence 7999999999998775 4667777776651 12344555788999974 377654
No 200
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.20 E-value=0.001 Score=53.17 Aligned_cols=109 Identities=16% Similarity=0.237 Sum_probs=72.7
Q ss_pred CCCCCCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC-cEEEEEECCCcc----h----
Q 029545 75 PDGPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKG----L---- 145 (191)
Q Consensus 75 ~~~~~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~-v~~~~vd~d~~~----~---- 145 (191)
+...++++.+.. +....++. ....++|.|+.|.+-.||+=..-.+.+++++++|.+ +.|+.|-+.+.- +
T Consensus 78 ~APns~vv~l~g-~~~~~ild-f~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~~~~ 155 (237)
T PF00837_consen 78 PAPNSPVVTLDG-QRSCRILD-FAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWAFGN 155 (237)
T ss_pred CCCCCceEeeCC-CcceeHHH-hccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCCccCCC
Confidence 334555666643 33233332 345789999999999999999999999999999998 567766654310 0
Q ss_pred ------------------H------------------HHHHhcCCCccc-EEEEEeCCeEEEEEe-C---CCHHHHHHHH
Q 029545 146 ------------------E------------------STLSKLNISAVP-TFLFFQHGEKVAEIV-G---ADVSRLKTTM 184 (191)
Q Consensus 146 ------------------~------------------~l~~~~~I~~~P-t~~~~~~G~~~~~~~-G---~~~~~l~~~i 184 (191)
. .....|| +.| .+.++++|+.+..-. | .+++++++|+
T Consensus 156 ~~~~i~qh~sledR~~aA~~l~~~~~~~pi~vD~mdN~~~~~Yg--A~PeRlyIi~~gkv~Y~Gg~GP~~y~~~e~r~~L 233 (237)
T PF00837_consen 156 NPYEIPQHRSLEDRLRAAKLLKEEFPQCPIVVDTMDNNFNKAYG--ALPERLYIIQDGKVVYKGGPGPFGYSPEELREWL 233 (237)
T ss_pred CceeecCCCCHHHHHHHHHHHHhhCCCCCEEEEccCCHHHHHhC--CCcceEEEEECCEEEEeCCCCCCcCCHHHHHHHH
Confidence 0 1112222 578 677788998664311 2 2899999999
Q ss_pred HHH
Q 029545 185 EQL 187 (191)
Q Consensus 185 ~~~ 187 (191)
+++
T Consensus 234 ~~~ 236 (237)
T PF00837_consen 234 EKY 236 (237)
T ss_pred Hhc
Confidence 975
No 201
>PRK10824 glutaredoxin-4; Provisional
Probab=97.13 E-value=0.0022 Score=45.88 Aligned_cols=53 Identities=19% Similarity=0.182 Sum_probs=34.8
Q ss_pred CCChhhcchhHHHHHHHhhCCCcEEEEEECCCc-ch-HHHHHhcCCCcccEEEEEeCCeEEE
Q 029545 111 AWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK-GL-ESTLSKLNISAVPTFLFFQHGEKVA 170 (191)
Q Consensus 111 ~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~-~~-~~l~~~~~I~~~Pt~~~~~~G~~~~ 170 (191)
|||++|++....|.++ ++.+..+|++.+ +. ..+.+.-|-..+|.+.+ +|+.+.
T Consensus 28 p~Cpyc~~ak~lL~~~-----~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI--~G~~IG 82 (115)
T PRK10824 28 PSCGFSAQAVQALSAC-----GERFAYVDILQNPDIRAELPKYANWPTFPQLWV--DGELVG 82 (115)
T ss_pred CCCchHHHHHHHHHHc-----CCCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--CCEEEc
Confidence 6999999999998876 344455666654 11 12333346677887765 888764
No 202
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.05 E-value=0.0045 Score=43.91 Aligned_cols=72 Identities=13% Similarity=0.138 Sum_probs=53.6
Q ss_pred hhhcchhHHHHHHHhhCC-C-cEEEEEECCCcchHHHHHhcCCCc----ccEEEEEeCCeEEEEEe-CC-CHHHHHHHHH
Q 029545 114 GPCKFIWPVIGELSAKHP-H-VTTYKIDIDQKGLESTLSKLNISA----VPTFLFFQHGEKVAEIV-GA-DVSRLKTTME 185 (191)
Q Consensus 114 ~~C~~~~p~~~~la~~~~-~-v~~~~vd~d~~~~~~l~~~~~I~~----~Pt~~~~~~G~~~~~~~-G~-~~~~l~~~i~ 185 (191)
..-..+...+.++|++++ + +.|+.+|.+.. ....+.||+.. +|++.++.......... .. +.+.|.+|++
T Consensus 31 ~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~--~~~l~~fgl~~~~~~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~ 108 (111)
T cd03073 31 KGTNYWRNRVLKVAKDFPDRKLNFAVADKEDF--SHELEEFGLDFSGGEKPVVAIRTAKGKKYVMEEEFSDVDALEEFLE 108 (111)
T ss_pred hHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHH--HHHHHHcCCCcccCCCCEEEEEeCCCCccCCCcccCCHHHHHHHHH
Confidence 334567889999999999 5 99999999876 45888999984 99999986322111122 23 7789999998
Q ss_pred HH
Q 029545 186 QL 187 (191)
Q Consensus 186 ~~ 187 (191)
++
T Consensus 109 ~f 110 (111)
T cd03073 109 DF 110 (111)
T ss_pred Hh
Confidence 75
No 203
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=96.87 E-value=0.0034 Score=54.47 Aligned_cols=58 Identities=16% Similarity=0.279 Sum_probs=42.4
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcch-HHHHHh---------cCCCcccEEEEEeCCeEE
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGL-ESTLSK---------LNISAVPTFLFFQHGEKV 169 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~-~~l~~~---------~~I~~~Pt~~~~~~G~~~ 169 (191)
|+.|..+||++|++.+..+++. ++.+-.+|++++.. .++.++ .|.+.+|++++ +|+.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~i 71 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHI 71 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEEE
Confidence 7889999999999999888764 67888899986521 122222 46789999976 66544
No 204
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=96.85 E-value=0.033 Score=40.95 Aligned_cols=100 Identities=14% Similarity=0.222 Sum_probs=70.6
Q ss_pred HHHHHHHhhh----hcCCCcEEEEEEcCCCh----hhcch--hHHHHHHHhhCCCcEEEEEECCCcch------------
Q 029545 88 EEFNSSLGKV----KDDSLPAIFYFTAAWCG----PCKFI--WPVIGELSAKHPHVTTYKIDIDQKGL------------ 145 (191)
Q Consensus 88 ~~f~~~l~~~----~~~~k~vlV~F~a~wC~----~C~~~--~p~~~~la~~~~~v~~~~vd~d~~~~------------ 145 (191)
..++++++.+ +.+.|+.+|+.+.+--. .|++. .+.+.++.+. ++.+...|++.+++
T Consensus 4 Gs~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~--nfv~Wg~dvt~~~~~~~fl~~~~~~~ 81 (136)
T cd02990 4 GSLEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQ--NFITWGWDMTKESNKARFLSSCTRHF 81 (136)
T ss_pred CcHHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHc--CEEEEeeeccchhhhhHHHHhhhhhh
Confidence 3566777777 77899999999998764 44433 2333444432 58888889888642
Q ss_pred ----HHHHHhcCCCcccEEEEEe-CC---eEEEEEeCC-CHHHHHHHHHHHhc
Q 029545 146 ----ESTLSKLNISAVPTFLFFQ-HG---EKVAEIVGA-DVSRLKTTMEQLYK 189 (191)
Q Consensus 146 ----~~l~~~~~I~~~Pt~~~~~-~G---~~~~~~~G~-~~~~l~~~i~~~~~ 189 (191)
....+.++...+|.+.++- .. ..+.++.|. +++++...|...++
T Consensus 82 g~~a~~~~~~~~~~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ve 134 (136)
T cd02990 82 GSVAAQTIRNIKTDQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAME 134 (136)
T ss_pred hHHHHHHHHhcCcCCCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHHh
Confidence 2356677899999887773 22 677889998 99999888877653
No 205
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.0095 Score=41.79 Aligned_cols=59 Identities=17% Similarity=0.352 Sum_probs=40.0
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHh----cCCCcccEEEEEeCCeEE
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSK----LNISAVPTFLFFQHGEKV 169 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~----~~I~~~Pt~~~~~~G~~~ 169 (191)
+|.|..+||+.|+.++..|.++ -.+..++.+|-+.+. .++.+. -+-+.+|.+++ +|+.+
T Consensus 16 VVifSKs~C~~c~~~k~ll~~~---~v~~~vvELD~~~~g-~eiq~~l~~~tg~~tvP~vFI--~Gk~i 78 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSDL---GVNPKVVELDEDEDG-SEIQKALKKLTGQRTVPNVFI--GGKFI 78 (104)
T ss_pred EEEEECCcCchHHHHHHHHHhC---CCCCEEEEccCCCCc-HHHHHHHHHhcCCCCCCEEEE--CCEEE
Confidence 6779999999999988888771 112566666666542 343332 34568998876 88876
No 206
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=96.70 E-value=0.054 Score=38.99 Aligned_cols=96 Identities=16% Similarity=0.208 Sum_probs=64.0
Q ss_pred CHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHH----hhCCCcEEEEEECCC---cchHHHHHhcCC--Cc
Q 029545 86 SGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELS----AKHPHVTTYKIDIDQ---KGLESTLSKLNI--SA 156 (191)
Q Consensus 86 s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la----~~~~~v~~~~vd~d~---~~~~~l~~~~~I--~~ 156 (191)
+.-+|++.+.. -+.+||.|=... +--.-...+.+++ +..+++-++.|-+.. .++.+|+++|+| ..
T Consensus 10 D~~tFdKvi~k----f~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~ 83 (126)
T PF07912_consen 10 DELTFDKVIPK----FKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKED 83 (126)
T ss_dssp STTHHHHHGGG----SSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC
T ss_pred cceehhheecc----CceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCccc
Confidence 45789998854 579999997653 2223344555665 234468888887754 357899999999 57
Q ss_pred ccEEEEEe-CCeEEEEE--eCC-CHHHHHHHHHHH
Q 029545 157 VPTFLFFQ-HGEKVAEI--VGA-DVSRLKTTMEQL 187 (191)
Q Consensus 157 ~Pt~~~~~-~G~~~~~~--~G~-~~~~l~~~i~~~ 187 (191)
+|.+.+|. +.+.-..+ .|. +.+.|..|+++.
T Consensus 84 fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 84 FPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp -SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHT
T ss_pred CCEEEEecCCCCCCccCCccCCccHHHHHHHHHhC
Confidence 89999997 44444555 555 899999999876
No 207
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=96.64 E-value=0.028 Score=42.93 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=28.0
Q ss_pred EEEEEEcCCChhhcchhHHHHHHHhhCCCcEEE
Q 029545 104 AIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTY 136 (191)
Q Consensus 104 vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~ 136 (191)
.|.+|+..-||+|-...+.+.++.+.++++.+-
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~ 33 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIE 33 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEE
Confidence 378899999999999999999999998664443
No 208
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.0044 Score=56.18 Aligned_cols=78 Identities=18% Similarity=0.250 Sum_probs=51.5
Q ss_pred HHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHH---HHHHhhCC-CcEEEEEECCCcchHHHHHhcC--------C
Q 029545 87 GEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVI---GELSAKHP-HVTTYKIDIDQKGLESTLSKLN--------I 154 (191)
Q Consensus 87 ~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~---~~la~~~~-~v~~~~vd~d~~~~~~l~~~~~--------I 154 (191)
++-|++ ++..+||++|-...+||-.|+-|..+- .++++... +++-++||-++ -+++-+.|. -
T Consensus 33 ~eAf~~----A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREE--RPDvD~~Ym~~~q~~tG~ 106 (667)
T COG1331 33 EEAFAK----AKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREE--RPDVDSLYMNASQAITGQ 106 (667)
T ss_pred HHHHHH----HHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhh--ccCHHHHHHHHHHHhccC
Confidence 355555 456799999999999999999886643 44555432 35555555544 466555443 4
Q ss_pred CcccEEEEE-eCCeEEE
Q 029545 155 SAVPTFLFF-QHGEKVA 170 (191)
Q Consensus 155 ~~~Pt~~~~-~~G~~~~ 170 (191)
-+.|-.+|+ .+|+...
T Consensus 107 GGWPLtVfLTPd~kPFf 123 (667)
T COG1331 107 GGWPLTVFLTPDGKPFF 123 (667)
T ss_pred CCCceeEEECCCCceee
Confidence 489965555 6888764
No 209
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.027 Score=45.01 Aligned_cols=37 Identities=24% Similarity=0.554 Sum_probs=29.6
Q ss_pred HHHHhcCCCcccEEEEEeCCeEEEEEeCC-CHHHHHHHHHHHh
Q 029545 147 STLSKLNISAVPTFLFFQHGEKVAEIVGA-DVSRLKTTMEQLY 188 (191)
Q Consensus 147 ~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~i~~~~ 188 (191)
.++.++||.++||+++ +|+ .+.|. +.++|.+.|+...
T Consensus 206 ~~a~~~gv~gTPt~~v--~~~---~~~g~~~~~~l~~~i~~~~ 243 (244)
T COG1651 206 KLAQQLGVNGTPTFIV--NGK---LVPGLPDLDELKAIIDEAL 243 (244)
T ss_pred HHHHhcCCCcCCeEEE--CCe---eecCCCCHHHHHHHHHHhh
Confidence 5678899999999997 454 56687 7899999888754
No 210
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.47 E-value=0.088 Score=36.38 Aligned_cols=95 Identities=14% Similarity=0.133 Sum_probs=64.5
Q ss_pred eEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhC-CCcEEEEEECCCcchHHHHHhcCCCcccE
Q 029545 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKH-PHVTTYKIDIDQKGLESTLSKLNISAVPT 159 (191)
Q Consensus 81 ~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~-~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt 159 (191)
+..+.+.+++++++. .++..++|-|+..--. .....+.++|..+ .++.|+... + .++...+++. .|+
T Consensus 2 v~~i~~~~~~e~~~~---~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~-~----~~~~~~~~~~-~~~ 69 (102)
T cd03066 2 VEIINSERELQAFEN---IEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF-D----SKVAKKLGLK-MNE 69 (102)
T ss_pred ceEcCCHHHHHHHhc---ccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC-c----HHHHHHcCCC-CCc
Confidence 456778888998874 0355677777766433 4566788888888 457775432 1 4667777764 799
Q ss_pred EEEEeC-CeEEEEE-eCC-CHHHHHHHHHHH
Q 029545 160 FLFFQH-GEKVAEI-VGA-DVSRLKTTMEQL 187 (191)
Q Consensus 160 ~~~~~~-G~~~~~~-~G~-~~~~l~~~i~~~ 187 (191)
++++++ .+....+ .|. +.+.|.+||+..
T Consensus 70 i~l~~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 70 VDFYEPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred EEEeCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 999965 4433446 556 899999999864
No 211
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.044 Score=41.27 Aligned_cols=88 Identities=10% Similarity=0.115 Sum_probs=62.9
Q ss_pred CCCcEEEEEEc-CCChhhcchhHHHHHHHhhCC--CcEEEEEECCCcc-------------------hHHHHHhcCCCc-
Q 029545 100 DSLPAIFYFTA-AWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQKG-------------------LESTLSKLNISA- 156 (191)
Q Consensus 100 ~~k~vlV~F~a-~wC~~C~~~~p~~~~la~~~~--~v~~~~vd~d~~~-------------------~~~l~~~~~I~~- 156 (191)
.+++||++||- .|++.|....-.|.+...++. ++.++.|..|..+ ...+++.||+..
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~ 108 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGE 108 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccc
Confidence 36688999885 699999998888888777765 4888888876531 236788888743
Q ss_pred -----------ccEEEEE-eCCeEEEEEeCC----CHHHHHHHHHHH
Q 029545 157 -----------VPTFLFF-QHGEKVAEIVGA----DVSRLKTTMEQL 187 (191)
Q Consensus 157 -----------~Pt~~~~-~~G~~~~~~~G~----~~~~l~~~i~~~ 187 (191)
.++.+++ ++|++....... ..+++.+.++++
T Consensus 109 k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 109 KKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred cccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 3555555 578887766443 567777777765
No 212
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=96.43 E-value=0.013 Score=44.84 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=24.5
Q ss_pred EEEcCCChhhcchhHHHHHHHhhCCC-cEEEEE
Q 029545 107 YFTAAWCGPCKFIWPVIGELSAKHPH-VTTYKI 138 (191)
Q Consensus 107 ~F~a~wC~~C~~~~p~~~~la~~~~~-v~~~~v 138 (191)
+|..|.|+.|-.+.|.+.++..++++ +.+-.|
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i 34 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFI 34 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEE
Confidence 69999999999999999999999986 544433
No 213
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=96.13 E-value=0.049 Score=40.58 Aligned_cols=59 Identities=14% Similarity=0.284 Sum_probs=41.3
Q ss_pred EEEEEcC------CChhhcchhHHHHHHHhhCCCcEEEEEECCCcc--hHHHHHhcCC----CcccEEEEEeCCeEEE
Q 029545 105 IFYFTAA------WCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG--LESTLSKLNI----SAVPTFLFFQHGEKVA 170 (191)
Q Consensus 105 lV~F~a~------wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~--~~~l~~~~~I----~~~Pt~~~~~~G~~~~ 170 (191)
|+.|+++ +|++|+..+..|+.+ +|.+-.+|++.+. ..++.+..+- ..+|.+.+ +|+.+.
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~-----~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~IG 72 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF-----RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGRYLG 72 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCEEEe
Confidence 4566666 999999999988765 5778888987651 2345555554 67888775 676553
No 214
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.06 E-value=0.045 Score=41.27 Aligned_cols=65 Identities=18% Similarity=0.151 Sum_probs=51.9
Q ss_pred chhHHHHHHHhhCCC-cEEEEEECCCcchHHHHHhcCCCcccEEEEEeCC-eEEEEEeCC--CHHHHHHHHHHHh
Q 029545 118 FIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHG-EKVAEIVGA--DVSRLKTTMEQLY 188 (191)
Q Consensus 118 ~~~p~~~~la~~~~~-v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G-~~~~~~~G~--~~~~l~~~i~~~~ 188 (191)
.....+.++|+.+.+ +.|+.+. + .++++++++.. |++++|+++ +....+.|. +.++|.+||....
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~---~--~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~ 75 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTF---N--EELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNS 75 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE------HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCcCCcEEEEEc---H--HHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhc
Confidence 356678899999885 8888876 2 68899999988 999999873 445667784 9999999998763
No 215
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=95.50 E-value=0.32 Score=33.75 Aligned_cols=92 Identities=13% Similarity=0.128 Sum_probs=62.0
Q ss_pred EEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCC-CcEEEEEECCCcchHHHHHhcCCCcccEE
Q 029545 82 LVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQKGLESTLSKLNISAVPTF 160 (191)
Q Consensus 82 ~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~-~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~ 160 (191)
..+.+.+++++++. .++.++|-|+..--. .....+.++|..+. ++.|+...- ..+.+.+++ .|++
T Consensus 3 ~~i~s~~~l~~f~~----~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~-----~~~~~~~~~--~~~i 68 (104)
T cd03069 3 VELRTEAEFEKFLS----DDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTSD-----KQLLEKYGY--GEGV 68 (104)
T ss_pred cccCCHHHHHHHhc----cCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEECh-----HHHHHhcCC--CCce
Confidence 45667888888764 466777777766433 45677888888884 577754321 466788888 6888
Q ss_pred EEEeC-------CeEEEEEeCC-CHHHHHHHHHHH
Q 029545 161 LFFQH-------GEKVAEIVGA-DVSRLKTTMEQL 187 (191)
Q Consensus 161 ~~~~~-------G~~~~~~~G~-~~~~l~~~i~~~ 187 (191)
++|+. ......+.|. +.+.|.+||+..
T Consensus 69 vl~~p~~~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 69 VLFRPPRLSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred EEEechhhhcccCcccccccCcCCHHHHHHHHHhh
Confidence 88832 1122336676 888999999764
No 216
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=95.10 E-value=0.29 Score=31.82 Aligned_cols=73 Identities=12% Similarity=0.135 Sum_probs=43.6
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcc--hHHHHHhcCCCcccEEEEEeCCeEEEEEeCCCHHHHHH
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG--LESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKT 182 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~--~~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~~~~~l~~ 182 (191)
+..++.++|+.|.+.+-.+++. ++.+-.++++..+ ..++.+.-+-..+|+++.-.+|..+ .+...|.+
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~-----gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l-----~es~~I~~ 71 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTEL-----ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQM-----FESADIVK 71 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHc-----CCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEE-----EcHHHHHH
Confidence 3467778999999877777655 4444445665432 2344444455689998632234322 25666777
Q ss_pred HHHHH
Q 029545 183 TMEQL 187 (191)
Q Consensus 183 ~i~~~ 187 (191)
+|++.
T Consensus 72 yL~~~ 76 (77)
T cd03041 72 YLFKT 76 (77)
T ss_pred HHHHh
Confidence 77653
No 217
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=94.96 E-value=0.75 Score=31.55 Aligned_cols=83 Identities=13% Similarity=0.138 Sum_probs=56.1
Q ss_pred HHHHHHHhhhhcCCCcEEE-EEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEeCC
Q 029545 88 EEFNSSLGKVKDDSLPAIF-YFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHG 166 (191)
Q Consensus 88 ~~f~~~l~~~~~~~k~vlV-~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G 166 (191)
+++...++. -.++|.+ .|..+. ..|..+...+++++..-+.+.+-..+.+. ..|++.+..+|
T Consensus 8 ~qL~~~f~~---l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSdkI~~~~~~~~~-------------~~P~~~i~~~~ 70 (94)
T cd02974 8 QQLKAYLER---LENPVELVASLDDS-EKSAELLELLEEIASLSDKITLEEDNDDE-------------RKPSFSINRPG 70 (94)
T ss_pred HHHHHHHHh---CCCCEEEEEEeCCC-cchHHHHHHHHHHHHhCCceEEEEecCCC-------------CCCEEEEecCC
Confidence 455566543 2345544 555544 99999999999999887666654322211 47999998777
Q ss_pred eE-EEEEeCC-CHHHHHHHHHHH
Q 029545 167 EK-VAEIVGA-DVSRLKTTMEQL 187 (191)
Q Consensus 167 ~~-~~~~~G~-~~~~l~~~i~~~ 187 (191)
+. --++.|. .-.++..+|..+
T Consensus 71 ~~~gIrF~GiP~GhEf~Slilai 93 (94)
T cd02974 71 EDTGIRFAGIPMGHEFTSLVLAL 93 (94)
T ss_pred CcccEEEEecCCchhHHHHHHHh
Confidence 43 2577888 788898888765
No 218
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=94.85 E-value=0.3 Score=42.19 Aligned_cols=99 Identities=11% Similarity=0.156 Sum_probs=69.6
Q ss_pred HHHHHHhhhhcCCCcEEEEEEcCCChhhcchh--HHHHHHHhh-C-CCcEEEEEECCCcchHHHHHhcCCCcccEEEEE-
Q 029545 89 EFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIW--PVIGELSAK-H-PHVTTYKIDIDQKGLESTLSKLNISAVPTFLFF- 163 (191)
Q Consensus 89 ~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~--p~~~~la~~-~-~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~- 163 (191)
++-+++..++.+ +.++|.|-+-......++. ..++..... . ..+..++|+........+..-|-+..+|.+.|+
T Consensus 7 nipeAIa~aK~k-kalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg 85 (506)
T KOG2507|consen 7 NIPEAIAEAKGK-KALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIG 85 (506)
T ss_pred chHHHHHHhhcC-CeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeec
Confidence 344556655544 5566666666666666665 222333222 2 237777787777666788888999999999888
Q ss_pred eCCeEEEEEeCC-CHHHHHHHHHHHh
Q 029545 164 QHGEKVAEIVGA-DVSRLKTTMEQLY 188 (191)
Q Consensus 164 ~~G~~~~~~~G~-~~~~l~~~i~~~~ 188 (191)
+.|..+..+.|. ..++|..-|++..
T Consensus 86 ~sGtpLevitg~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 86 FSGTPLEVITGFVTADELASSIEKVW 111 (506)
T ss_pred CCCceeEEeeccccHHHHHHHHHHHH
Confidence 599999999999 8999999888864
No 219
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=94.53 E-value=0.26 Score=41.01 Aligned_cols=134 Identities=7% Similarity=0.089 Sum_probs=71.8
Q ss_pred CCCCCCCCCccccccCCCCCCccCCCCCcccccccccCC-CCCCCCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCCh
Q 029545 36 NNTTVPKIPSFRNYIPASSSQSQSQMLPSLQFHRTLFSS-PDGPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCG 114 (191)
Q Consensus 36 ~~~~v~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~-~~~~~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~ 114 (191)
+..+|++||+|..|..+-.--+.+++.- ...-+- -.....+++..+.++...... +...++.+|+|.+.-.|
T Consensus 94 nefgiqGYPTIk~~kgd~a~dYRG~R~K-----d~iieFAhR~a~aiI~pi~enQ~~fehl--q~Rhq~ffVf~Gtge~P 166 (468)
T KOG4277|consen 94 NEFGIQGYPTIKFFKGDHAIDYRGGREK-----DAIIEFAHRCAAAIIEPINENQIEFEHL--QARHQPFFVFFGTGEGP 166 (468)
T ss_pred hhhccCCCceEEEecCCeeeecCCCccH-----HHHHHHHHhcccceeeecChhHHHHHHH--hhccCceEEEEeCCCCc
Confidence 4589999999999987754322222110 000000 235566777777665543332 24567888888754322
Q ss_pred hhcchhHHHHHHHhh-CCCcEEEEEECCCcchHHHHH-hcCCCcccEEEEEeCCeEEEEEeCCCHHHHHHHHHHH
Q 029545 115 PCKFIWPVIGELSAK-HPHVTTYKIDIDQKGLESTLS-KLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTMEQL 187 (191)
Q Consensus 115 ~C~~~~p~~~~la~~-~~~v~~~~vd~d~~~~~~l~~-~~~I~~~Pt~~~~~~G~~~~~~~G~~~~~l~~~i~~~ 187 (191)
+...+.+.+.+ +.-..|+. ..+ +++- .-.....|.+.+|++...-... ..+.++|.+||.+-
T Consensus 167 ----L~d~fidAASe~~~~a~FfS--ase----eVaPe~~~~kempaV~VFKDetf~i~d-e~dd~dLseWinRE 230 (468)
T KOG4277|consen 167 ----LFDAFIDAASEKFSVARFFS--ASE----EVAPEENDAKEMPAVAVFKDETFEIED-EGDDEDLSEWINRE 230 (468)
T ss_pred ----HHHHHHHHhhhheeeeeeec--ccc----ccCCcccchhhccceEEEccceeEEEe-cCchhHHHHHHhHh
Confidence 22233333322 21122322 221 1111 1234578999999987544333 33778899999764
No 220
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=94.51 E-value=0.49 Score=30.42 Aligned_cols=73 Identities=12% Similarity=0.193 Sum_probs=44.5
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEe--CCeEEEEEeCCCHHHHHH
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQ--HGEKVAEIVGADVSRLKT 182 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~--~G~~~~~~~G~~~~~l~~ 182 (191)
+..|+.+.|+.|++.+-.+.+. ++.+-.++++.....++ +.-+-..+|++..-+ +|+.+. +...+.+
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~-----gi~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l~-----eS~~I~~ 70 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH-----GIPYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQLV-----DSSVIIS 70 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC-----CCceEEEECCchhHHHH-HHhCCCccCEEEECCCCCccEEE-----cHHHHHH
Confidence 4568889999999988777654 44444455554222333 334556899987532 233222 5566777
Q ss_pred HHHHHh
Q 029545 183 TMEQLY 188 (191)
Q Consensus 183 ~i~~~~ 188 (191)
+|++.+
T Consensus 71 yL~~~~ 76 (77)
T cd03040 71 TLKTYL 76 (77)
T ss_pred HHHHHc
Confidence 777664
No 221
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=94.50 E-value=0.48 Score=42.25 Aligned_cols=86 Identities=12% Similarity=0.112 Sum_probs=61.7
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCe
Q 029545 88 EEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGE 167 (191)
Q Consensus 88 ~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~ 167 (191)
+++...+.. -.++|-+.++.+.|..|..+...+++++..-+.+.+-..+ . . ...|++.+.++|+
T Consensus 8 ~~l~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~---~--~--------~~~p~~~~~~~~~ 71 (517)
T PRK15317 8 TQLKQYLEL---LERPIELVASLDDSEKSAELKELLEEIASLSDKITVEEDS---L--D--------VRKPSFSITRPGE 71 (517)
T ss_pred HHHHHHHHh---CCCCEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEcc---C--C--------CCCCEEEEEcCCc
Confidence 455555543 3457766666668999999999999999887766653322 1 1 2479999887775
Q ss_pred EE-EEEeCC-CHHHHHHHHHHHhc
Q 029545 168 KV-AEIVGA-DVSRLKTTMEQLYK 189 (191)
Q Consensus 168 ~~-~~~~G~-~~~~l~~~i~~~~~ 189 (191)
.. -++.|. .-.++..+|..++.
T Consensus 72 ~~~i~f~g~P~g~Ef~s~i~~i~~ 95 (517)
T PRK15317 72 DTGVRFAGIPMGHEFTSLVLALLQ 95 (517)
T ss_pred cceEEEEecCccHHHHHHHHHHHH
Confidence 43 577888 88899999888763
No 222
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=0.45 Score=35.64 Aligned_cols=90 Identities=16% Similarity=0.199 Sum_probs=57.7
Q ss_pred CCCcEEEEEEcCCChhhcchhHHHHHHHhhCCC--cEEEEEECCCc---------chHHHHH-hcCCC------------
Q 029545 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPH--VTTYKIDIDQK---------GLESTLS-KLNIS------------ 155 (191)
Q Consensus 100 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~--v~~~~vd~d~~---------~~~~l~~-~~~I~------------ 155 (191)
.++.+||.=.|+-|+.--+ ...++.|.++|.+ +.++.+-|+.- +..+.|+ .|||+
T Consensus 24 ~GkVlLIVNtASkCGfTpQ-YegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~YgVtFp~f~Ki~VnG~ 102 (162)
T COG0386 24 KGKVLLIVNTASKCGFTPQ-YEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNYGVTFPMFSKIDVNGK 102 (162)
T ss_pred CCcEEEEEEcccccCCcHh-HHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhccCceeeeeeEEeecCC
Confidence 4778889899999987642 2345556666653 66666666531 1223332 34444
Q ss_pred -----------ccc-------------EEEEEeCCeEEEEEeCC-CHHHHHHHHHHHhcC
Q 029545 156 -----------AVP-------------TFLFFQHGEKVAEIVGA-DVSRLKTTMEQLYKK 190 (191)
Q Consensus 156 -----------~~P-------------t~~~~~~G~~~~~~~G~-~~~~l~~~i~~~~~~ 190 (191)
..| -+++=++|+++.|+.-. .+++++..|++++.+
T Consensus 103 ~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~~ 162 (162)
T COG0386 103 NAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLLAE 162 (162)
T ss_pred CCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHhcC
Confidence 112 23333699999998877 899999999998753
No 223
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=94.15 E-value=0.14 Score=38.33 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=30.6
Q ss_pred CcEEEEEEcCCChhhcch-hHHHHHHHhhCC--Cc-EEEEEECCC
Q 029545 102 LPAIFYFTAAWCGPCKFI-WPVIGELSAKHP--HV-TTYKIDIDQ 142 (191)
Q Consensus 102 k~vlV~F~a~wC~~C~~~-~p~~~~la~~~~--~v-~~~~vd~d~ 142 (191)
..+|+.|.+.||+.|... .+.+.+...++. ++ .++.|..|.
T Consensus 31 ~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~ 75 (155)
T cd03013 31 KVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVND 75 (155)
T ss_pred cEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCC
Confidence 445555567899999998 999988888774 46 577777654
No 224
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=94.14 E-value=0.018 Score=47.56 Aligned_cols=87 Identities=20% Similarity=0.318 Sum_probs=65.0
Q ss_pred CCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCeEEEEEeCC-CHH
Q 029545 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGA-DVS 178 (191)
Q Consensus 100 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~-~~~ 178 (191)
+..++-+.||+.||+..+..+|.++-....++.+....++-.. ..++...+|++.+.|++.+.. -..-..+-|. +..
T Consensus 75 ~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~vee~~-~lpsv~s~~~~~~~ps~~~~n-~t~~~~~~~~r~l~ 152 (319)
T KOG2640|consen 75 KNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVEESQ-ALPSVFSSYGIHSEPSNLMLN-QTCPASYRGERDLA 152 (319)
T ss_pred cCCcccccchhcccCcccccCcccchhhhhccccccccHHHHh-hcccchhccccccCCcceeec-cccchhhcccccHH
Confidence 3678899999999999999999998888888754443333111 136788999999999998754 3344555676 888
Q ss_pred HHHHHHHHHh
Q 029545 179 RLKTTMEQLY 188 (191)
Q Consensus 179 ~l~~~i~~~~ 188 (191)
.|.++..+++
T Consensus 153 sLv~fy~~i~ 162 (319)
T KOG2640|consen 153 SLVNFYTEIT 162 (319)
T ss_pred HHHHHHHhhc
Confidence 8888887765
No 225
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=93.64 E-value=0.39 Score=30.49 Aligned_cols=59 Identities=12% Similarity=0.185 Sum_probs=37.9
Q ss_pred EEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCeEE
Q 029545 106 FYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKV 169 (191)
Q Consensus 106 V~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~~~ 169 (191)
+.|+.+||+.|.+..-.+++..-. +.+..+|.... ..++.+......+|++.. .+|..+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~---~e~~~v~~~~~-~~~~~~~np~~~vP~L~~-~~g~~l 60 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGIT---VELREVELKNK-PAEMLAASPKGTVPVLVL-GNGTVI 60 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCC---cEEEEeCCCCC-CHHHHHHCCCCCCCEEEE-CCCcEE
Confidence 457889999998887777654322 45555555432 256666666779999963 346544
No 226
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=93.63 E-value=0.52 Score=29.84 Aligned_cols=56 Identities=13% Similarity=0.211 Sum_probs=32.3
Q ss_pred EEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCeE
Q 029545 107 YFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEK 168 (191)
Q Consensus 107 ~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~~ 168 (191)
.++.++|++|.+.+-.+... ++.+-.+.++..+.....+..+-..+|++.. ++|..
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~-----gl~~~~~~~~~~~~~~~~~~~~~~~vP~L~~-~~~~~ 58 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLK-----NIPVEQIILQNDDEATPIRMIGAKQVPILEK-DDGSF 58 (71)
T ss_pred eEecCCCcHhHHHHHHHHHc-----CCCeEEEECCCCchHHHHHhcCCCccCEEEe-CCCeE
Confidence 56788999999877777544 4444444444332123333444557898853 33543
No 227
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=93.21 E-value=1.2 Score=39.64 Aligned_cols=87 Identities=13% Similarity=0.211 Sum_probs=61.8
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCe
Q 029545 88 EEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGE 167 (191)
Q Consensus 88 ~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~ 167 (191)
+++.+.+.. -.++|-+.++.+.|..|..+...+++++..-+.+.+...+.+. ...|++.+.++|+
T Consensus 8 ~~l~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~ki~~~~~~~~~------------~~~p~~~~~~~~~ 72 (515)
T TIGR03140 8 AQLKSYLAS---LENPVTLVLSAGSHEKSKELLELLDEIASLSDKISLTQNTADT------------LRKPSFTILRDGA 72 (515)
T ss_pred HHHHHHHHh---cCCCEEEEEEeCCCchhHHHHHHHHHHHHhCCCeEEEEecCCc------------CCCCeEEEecCCc
Confidence 455666553 3456666666557999999999999999887777664433221 3459998887776
Q ss_pred E-EEEEeCC-CHHHHHHHHHHHhc
Q 029545 168 K-VAEIVGA-DVSRLKTTMEQLYK 189 (191)
Q Consensus 168 ~-~~~~~G~-~~~~l~~~i~~~~~ 189 (191)
. --++.|. .-.++..+|..++.
T Consensus 73 ~~~i~f~g~P~g~Ef~s~i~~i~~ 96 (515)
T TIGR03140 73 DTGIRFAGIPGGHEFTSLVLAILQ 96 (515)
T ss_pred ccceEEEecCCcHHHHHHHHHHHH
Confidence 3 3577888 78889988887753
No 228
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=92.92 E-value=2.5 Score=33.17 Aligned_cols=91 Identities=15% Similarity=0.262 Sum_probs=59.9
Q ss_pred CCCcEEEEEEcCCCh-hhcchhHHHHHHHhhCC-----CcEEEEEECCCc-chH--------------------------
Q 029545 100 DSLPAIFYFTAAWCG-PCKFIWPVIGELSAKHP-----HVTTYKIDIDQK-GLE-------------------------- 146 (191)
Q Consensus 100 ~~k~vlV~F~a~wC~-~C~~~~p~~~~la~~~~-----~v~~~~vd~d~~-~~~-------------------------- 146 (191)
.+++++|.|.=+.|+ -|-.+...+..+.++.. ++.++.|.+|.+ +.+
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~ltg~~~~~~ 145 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIGLTGTPEQIE 145 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeeeeeCCHHHHH
Confidence 588999999978786 58877777766665543 355555555432 122
Q ss_pred HHHHhcCCCc--c-------------cEEEEEe-CCeEEEEEeCC-CHHHHHHHHHHHhcC
Q 029545 147 STLSKLNISA--V-------------PTFLFFQ-HGEKVAEIVGA-DVSRLKTTMEQLYKK 190 (191)
Q Consensus 147 ~l~~~~~I~~--~-------------Pt~~~~~-~G~~~~~~~G~-~~~~l~~~i~~~~~~ 190 (191)
++++.|+|.. + -.+++++ +|+....+.+. +++++.+.++++++.
T Consensus 146 ~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~~ 206 (207)
T COG1999 146 EVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLKE 206 (207)
T ss_pred HHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhhc
Confidence 4555565552 1 1234444 88888887776 889999999988764
No 229
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=92.46 E-value=0.48 Score=30.89 Aligned_cols=57 Identities=12% Similarity=0.068 Sum_probs=44.6
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCC-C-cEEEEEECCCcchHHHHHhcCCCcccEEEEE
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHP-H-VTTYKIDIDQKGLESTLSKLNISAVPTFLFF 163 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~-~-v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~ 163 (191)
+..|-+..-+........+.++.+++. + +.+-.||+.++ +++++.++|-++||++-.
T Consensus 4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~--P~lAe~~~ivAtPtLvk~ 62 (72)
T cd02978 4 LRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQ--PQLAEEDKIVATPTLVKV 62 (72)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccC--HhHHhhCCEEEechhhhc
Confidence 444555555778888888888877664 3 78888999998 999999999999998743
No 230
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.28 E-value=0.4 Score=31.45 Aligned_cols=59 Identities=19% Similarity=0.272 Sum_probs=38.3
Q ss_pred EEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcc--h------------HHHHHhcCCCcccEEEEEeCCeEEE
Q 029545 106 FYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG--L------------ESTLSKLNISAVPTFLFFQHGEKVA 170 (191)
Q Consensus 106 V~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~--~------------~~l~~~~~I~~~Pt~~~~~~G~~~~ 170 (191)
+.|++.-||.|..+...++++ ++.+-.|++...- . -+-.+..|--|+|.+++ .+|+.+-
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl-----~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~~vVl 77 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL-----NVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDGKVVL 77 (85)
T ss_pred eeeccccCcchHHHHHHHHHc-----CCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCCcEEE
Confidence 679999999997777666655 3444455554320 0 12345667779999885 6676653
No 231
>PHA03075 glutaredoxin-like protein; Provisional
Probab=91.93 E-value=0.24 Score=35.22 Aligned_cols=30 Identities=20% Similarity=0.386 Sum_probs=27.1
Q ss_pred CcEEEEEEcCCChhhcchhHHHHHHHhhCC
Q 029545 102 LPAIFYFTAAWCGPCKFIWPVIGELSAKHP 131 (191)
Q Consensus 102 k~vlV~F~a~wC~~C~~~~p~~~~la~~~~ 131 (191)
|.++|.|..|.|+-|......+.++..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 468999999999999999999999988873
No 232
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=91.88 E-value=0.94 Score=40.73 Aligned_cols=166 Identities=17% Similarity=0.170 Sum_probs=86.9
Q ss_pred HHHHHhhhCCCCcchhhhhhhccCCCCCCCCCCccccccCCCCCCccCCCCCc-c---cc----cccccC------CCCC
Q 029545 12 LLVRRQVLNPNSTNIAKSLISHSTNNTTVPKIPSFRNYIPASSSQSQSQMLPS-L---QF----HRTLFS------SPDG 77 (191)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~p~-~---~~----~~~~~s------~~~~ 77 (191)
....+..+.....||+...=..-=-..+|++||+++.|.+++.....+...-. . +. .+.+.. -+.|
T Consensus 86 l~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~W 165 (606)
T KOG1731|consen 86 LEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSW 165 (606)
T ss_pred HhcccceeEEEEeeccchhhhhhHhhcCCCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCC
Confidence 34456677777888877763222236899999999999998766333322210 0 00 000000 0122
Q ss_pred C--CCeEEecCHHHHHHHHhhhhcCCCcEEEEE-EcCCChhhcchhHHHHHHHhhC--CCcEEEEEECCCcchHHHHHhc
Q 029545 78 P--SNILVIESGEEFNSSLGKVKDDSLPAIFYF-TAAWCGPCKFIWPVIGELSAKH--PHVTTYKIDIDQKGLESTLSKL 152 (191)
Q Consensus 78 ~--~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F-~a~wC~~C~~~~p~~~~la~~~--~~v~~~~vd~d~~~~~~l~~~~ 152 (191)
+ ..+....+.+++.+.+ .+....+-|.| ..+. .=.++.+.... +++.+..+-.++. ..+.+ +
T Consensus 166 P~f~pl~~~~~~~~l~~~~---~~~~~yvAiv~e~~~s-------~lg~~~~l~~l~~~~v~vr~~~d~q~--~~~~~-l 232 (606)
T KOG1731|consen 166 PNFDPLKDTTTLEELDEGI---STTANYVAIVFETEPS-------DLGWANLLNDLPSKQVGVRARLDTQN--FPLFG-L 232 (606)
T ss_pred CCCCCCCCcchHHHHhccc---ccccceeEEEEecCCc-------ccHHHHHHhhccCCCcceEEEecchh--ccccc-c
Confidence 2 1233333333443332 23333444445 2221 11234444444 4444443333332 34444 8
Q ss_pred CCCcccEEEEEeCCeEEEEEeCC-CHHHHHHHHHHHhcC
Q 029545 153 NISAVPTFLFFQHGEKVAEIVGA-DVSRLKTTMEQLYKK 190 (191)
Q Consensus 153 ~I~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~i~~~~~~ 190 (191)
++...|+.+++++|+...-.... +.+...+.|.+++++
T Consensus 233 ~~~~~~~~llfrnG~~q~l~~~~~s~~~y~~~I~~~lg~ 271 (606)
T KOG1731|consen 233 KPDNFPLALLFRNGEQQPLWPSSSSRSAYVKKIDDLLGD 271 (606)
T ss_pred CCCCchhhhhhcCCcccccccccccHHHHHHHHHHHhcC
Confidence 99999999999999865443333 666777777777654
No 233
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=91.84 E-value=0.92 Score=27.53 Aligned_cols=58 Identities=12% Similarity=0.045 Sum_probs=36.0
Q ss_pred EEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCeEE
Q 029545 107 YFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKV 169 (191)
Q Consensus 107 ~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~~~ 169 (191)
.|+.++|+.|.+..-.++...-. +....++.+.....++.+..+-..+|++.. +|..+
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~--~~~~~ 60 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGLP---YELVPVDLGEGEQEEFLALNPLGKVPVLED--GGLVL 60 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC---cEEEEeCCCCCCCHHHHhcCCCCCCCEEEE--CCEEE
Confidence 57889999999888777655322 344444444332123555567778998864 45543
No 234
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.44 E-value=0.47 Score=37.80 Aligned_cols=40 Identities=30% Similarity=0.576 Sum_probs=32.1
Q ss_pred HHHHhcCCCcccEEEEEeCCeEEEEEeCC-CHHHHHHHHHHHhcC
Q 029545 147 STLSKLNISAVPTFLFFQHGEKVAEIVGA-DVSRLKTTMEQLYKK 190 (191)
Q Consensus 147 ~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~i~~~~~~ 190 (191)
..+++.||+++||++| +|+. .+.|. +++.+...|++++++
T Consensus 175 ~~A~e~gI~gVP~fv~--d~~~--~V~Gaq~~~v~~~al~~~~~~ 215 (225)
T COG2761 175 AAAQEMGIRGVPTFVF--DGKY--AVSGAQPYDVLEDALRQLLAE 215 (225)
T ss_pred HHHHHCCCccCceEEE--cCcE--eecCCCCHHHHHHHHHHHHhc
Confidence 4578999999999998 4442 34688 999999999998754
No 235
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=91.27 E-value=0.087 Score=36.87 Aligned_cols=44 Identities=20% Similarity=0.147 Sum_probs=30.7
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCc-----chHHHHHhcC
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK-----GLESTLSKLN 153 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~-----~~~~l~~~~~ 153 (191)
+..|+.++|+.|++....+++- ++.+-.+|+.++ +...+.+++|
T Consensus 1 i~iy~~~~C~~crka~~~L~~~-----~i~~~~~di~~~p~s~~eL~~~l~~~g 49 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEAR-----GVAYTFHDYRKDGLDAATLERWLAKVG 49 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc-----CCCeEEEecccCCCCHHHHHHHHHHhC
Confidence 3578999999999988888654 555666666543 3445666665
No 236
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=91.24 E-value=0.1 Score=36.84 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=25.5
Q ss_pred EEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCc
Q 029545 106 FYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK 143 (191)
Q Consensus 106 V~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~ 143 (191)
..|+.++|+.|++....+++. ++.|-.+|+.++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~ 34 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH-----GVDYTAIDIVEE 34 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCceEEecccCC
Confidence 468999999999998888753 566777777654
No 237
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=91.15 E-value=3.1 Score=30.31 Aligned_cols=72 Identities=18% Similarity=0.183 Sum_probs=42.6
Q ss_pred HHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEeCC
Q 029545 87 GEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHG 166 (191)
Q Consensus 87 ~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G 166 (191)
.+.+++.+.++...+.++++.=+-.. .-+.....+.++...-.+ ..+.+| +.+-++|+|+.+|++++.+++
T Consensus 11 ~~~Lk~l~~~a~~~g~~~VlRG~~~~--~~~~T~~~i~~L~~~~~~---~~v~Id----P~lF~~f~I~~VPa~V~~~~~ 81 (130)
T TIGR02742 11 EPLLKQLLDQAEALGAPLVIRGLLDN--GFKATATRIQSLIKDGGK---SGVQID----PQWFKQFDITAVPAFVVVKDG 81 (130)
T ss_pred HHHHHHHHHHHHHhCCeEEEeCCCCC--CHHHHHHHHHHHHhcCCC---CcEEEC----hHHHhhcCceEcCEEEEECCC
Confidence 35667777776666654444322222 223334444444433322 233333 788999999999999999877
Q ss_pred e
Q 029545 167 E 167 (191)
Q Consensus 167 ~ 167 (191)
.
T Consensus 82 ~ 82 (130)
T TIGR02742 82 L 82 (130)
T ss_pred C
Confidence 4
No 238
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=91.07 E-value=2.8 Score=26.83 Aligned_cols=72 Identities=15% Similarity=0.163 Sum_probs=49.1
Q ss_pred EEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCeEEEEEeCCCHHHHHHHHHHH
Q 029545 108 FTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTMEQL 187 (191)
Q Consensus 108 F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~~~~~l~~~i~~~ 187 (191)
++.++|+.|++..=.++...- .+.+..++.... ..++.+...-..+|++. .+|..+. +...|.++|++.
T Consensus 2 y~~~~Sp~~~kv~~~l~~~~i---~~~~~~v~~~~~-~~~~~~~~p~~~vPvL~--~~g~~l~-----dS~~I~~yL~~~ 70 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEKGI---PYELVPVDPEEK-RPEFLKLNPKGKVPVLV--DDGEVLT-----DSAAIIEYLEER 70 (75)
T ss_dssp EEETTSHHHHHHHHHHHHHTE---EEEEEEEBTTST-SHHHHHHSTTSBSSEEE--ETTEEEE-----SHHHHHHHHHHH
T ss_pred CCcCCChHHHHHHHHHHHcCC---eEEEeccCcccc-hhHHHhhcccccceEEE--ECCEEEe-----CHHHHHHHHHHH
Confidence 678999999888777665421 144455554443 35667777778999997 5677544 677788888877
Q ss_pred hcC
Q 029545 188 YKK 190 (191)
Q Consensus 188 ~~~ 190 (191)
..+
T Consensus 71 ~~~ 73 (75)
T PF13417_consen 71 YPG 73 (75)
T ss_dssp STS
T ss_pred cCC
Confidence 653
No 239
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=90.57 E-value=2.8 Score=26.28 Aligned_cols=70 Identities=13% Similarity=0.105 Sum_probs=41.0
Q ss_pred EEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCeEEEEEeCCCHHHHHHHHH
Q 029545 106 FYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTME 185 (191)
Q Consensus 106 V~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~~~~~l~~~i~ 185 (191)
..|+.++|+.|++..-.+++..-. +....+|.... .+++.+......+|++. .+|..+. +...+.++++
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~---~~~~~v~~~~~-~~~~~~~~p~~~vP~l~--~~~~~l~-----es~aI~~yL~ 70 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS---VEIIDVDPDNP-PEDLAELNPYGTVPTLV--DRDLVLY-----ESRIIMEYLD 70 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc---cEEEEcCCCCC-CHHHHhhCCCCCCCEEE--ECCEEEE-----cHHHHHHHHH
Confidence 467889999999887777554322 33334444332 24555555667899774 3443221 4555666655
Q ss_pred H
Q 029545 186 Q 186 (191)
Q Consensus 186 ~ 186 (191)
+
T Consensus 71 ~ 71 (73)
T cd03059 71 E 71 (73)
T ss_pred h
Confidence 4
No 240
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=90.27 E-value=3.2 Score=30.63 Aligned_cols=72 Identities=14% Similarity=0.224 Sum_probs=49.6
Q ss_pred cEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCC----cccEEEEEeCCeEEEEEeCC-CH
Q 029545 103 PAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNIS----AVPTFLFFQHGEKVAEIVGA-DV 177 (191)
Q Consensus 103 ~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~----~~Pt~~~~~~G~~~~~~~G~-~~ 177 (191)
.-++.|++|.|+=|......++ ..++.+-.+..+.- ..+-++++|. +-=|.++ +|+.++ |- ..
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk-----~~Gf~Vk~~~~~d~--~alK~~~gIp~e~~SCHT~VI--~Gy~vE---GHVPa 93 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMK-----ANGFEVKVVETDDF--LALKRRLGIPYEMQSCHTAVI--NGYYVE---GHVPA 93 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHH-----hCCcEEEEeecCcH--HHHHHhcCCChhhccccEEEE--cCEEEe---ccCCH
Confidence 3488899999999987766665 22567776666663 6677778876 3445554 777654 54 67
Q ss_pred HHHHHHHHH
Q 029545 178 SRLKTTMEQ 186 (191)
Q Consensus 178 ~~l~~~i~~ 186 (191)
+++..++++
T Consensus 94 ~aI~~ll~~ 102 (149)
T COG3019 94 EAIARLLAE 102 (149)
T ss_pred HHHHHHHhC
Confidence 777777654
No 241
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=90.04 E-value=5.9 Score=28.89 Aligned_cols=107 Identities=14% Similarity=0.232 Sum_probs=58.0
Q ss_pred CCCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhh-cchhHHHHHHHhh--CCCcEEEEEECCCc-chHHHHHhcC
Q 029545 78 PSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPC-KFIWPVIGELSAK--HPHVTTYKIDIDQK-GLESTLSKLN 153 (191)
Q Consensus 78 ~~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C-~~~~p~~~~la~~--~~~v~~~~vd~d~~-~~~~l~~~~~ 153 (191)
..++.++.|.++.++.+.. .+..++| +-.+-||=- -..+|-....... -|+ .++.|=...+ +..+-++.|=
T Consensus 15 ~~Gf~eL~T~e~Vd~~~~~---~~GTtlV-vVNSVCGCAag~ARPa~~~al~~~kkPD-~lvTVFAGqDkEAt~~aR~yf 89 (136)
T PF06491_consen 15 RAGFEELTTAEEVDEALKN---KEGTTLV-VVNSVCGCAAGNARPAAAMALQNDKKPD-HLVTVFAGQDKEATAKAREYF 89 (136)
T ss_dssp TTT-EE--SHHHHHHHHHH-----SEEEE-EEE-SSHHHHHTHHHHHHHHHHHSS--S-EEEEEETTTSHHHHHHHHHTS
T ss_pred HcCccccCCHHHHHHHHhC---CCCcEEE-EEeccccccccccCHHHHHHHhCCCCCC-ceEEeccCCCHHHHHHHHHhc
Confidence 4578899999999999862 3344444 445667622 2456665443332 233 3334433332 1233344443
Q ss_pred ---CCcccEEEEEeCCeEEEEEe-----CCCHHHHHHHHHHHhc
Q 029545 154 ---ISAVPTFLFFQHGEKVAEIV-----GADVSRLKTTMEQLYK 189 (191)
Q Consensus 154 ---I~~~Pt~~~~~~G~~~~~~~-----G~~~~~l~~~i~~~~~ 189 (191)
-.+-|.+.+||+|+.+..+. |.+.+.|.+.|...+.
T Consensus 90 ~~~pPSSPS~ALfKdGelvh~ieRh~IEGr~a~~Ia~~L~~af~ 133 (136)
T PF06491_consen 90 EPYPPSSPSIALFKDGELVHFIERHHIEGRPAEEIAENLQDAFD 133 (136)
T ss_dssp TTS---SSEEEEEETTEEEEEE-GGGTTTS-HHHHHHHHHHHHH
T ss_pred CCCCCCCchheeeeCCEEEEEeehhhcCCCCHHHHHHHHHHHHH
Confidence 23778999999999997654 6688888887776654
No 242
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=89.93 E-value=0.15 Score=35.33 Aligned_cols=33 Identities=15% Similarity=0.124 Sum_probs=25.1
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCC
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQ 142 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~ 142 (191)
+..|+.++|+.|++....+++. ++.+-.+|+.+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~ 33 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEH-----GIEYEFIDYLK 33 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHc-----CCCcEEEeecc
Confidence 3578999999999998888764 55666677654
No 243
>PRK09301 circadian clock protein KaiB; Provisional
Probab=89.35 E-value=1.1 Score=31.31 Aligned_cols=77 Identities=14% Similarity=0.106 Sum_probs=58.1
Q ss_pred CCcEEEEEEcCCChhhcchhHHHHHHHhhC-CC-cEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCeEEEEEeCC--C
Q 029545 101 SLPAIFYFTAAWCGPCKFIWPVIGELSAKH-PH-VTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGA--D 176 (191)
Q Consensus 101 ~k~vlV~F~a~wC~~C~~~~p~~~~la~~~-~~-v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~--~ 176 (191)
+..++=.|.|..-+..+.....+.++.+.+ ++ +.+-.||+.++ +++++.++|-++||++-.. -....++.|. +
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~q--PelAE~~~IvATPTLIK~~-P~P~rriiGDlsd 81 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKN--PQLAEEDKILATPTLAKIL-PPPVRKIIGDLSD 81 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccC--HhHHhHCCeEEecHHhhcC-CCCcceeeccccc
Confidence 356677778888888888888888876654 44 77778999998 9999999999999977543 3456677785 5
Q ss_pred HHHH
Q 029545 177 VSRL 180 (191)
Q Consensus 177 ~~~l 180 (191)
.+.+
T Consensus 82 ~~kV 85 (103)
T PRK09301 82 REKV 85 (103)
T ss_pred HHHH
Confidence 4444
No 244
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=89.19 E-value=5.6 Score=28.11 Aligned_cols=68 Identities=19% Similarity=0.304 Sum_probs=41.0
Q ss_pred HHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHh---hCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEE
Q 029545 87 GEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSA---KHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFF 163 (191)
Q Consensus 87 ~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~---~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~ 163 (191)
.+.+.+++.++...+ +.+.|=.---+ .+.+.+..+.+ +.+.. ..|.+| +.+-++|+|+.+||+++-
T Consensus 10 ~~~L~~l~~~a~~~~--~~~V~RG~~~g---~~~~t~~~~~~l~~~~~~~--~~v~Id----P~~F~~y~I~~VPa~V~~ 78 (113)
T PF09673_consen 10 DASLRNLLKQAERAG--VVVVFRGFPDG---SFKPTAKAIQELLRKDDPC--PGVQID----PRLFRQYNITAVPAFVVV 78 (113)
T ss_pred HHHHHHHHHHHHhCC--cEEEEECCCCC---CHHHHHHHHHHHhhccCCC--cceeEC----hhHHhhCCceEcCEEEEE
Confidence 466777777766553 33333333223 55555544444 33222 233333 788999999999999998
Q ss_pred eC
Q 029545 164 QH 165 (191)
Q Consensus 164 ~~ 165 (191)
++
T Consensus 79 ~~ 80 (113)
T PF09673_consen 79 KD 80 (113)
T ss_pred cC
Confidence 77
No 245
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=88.99 E-value=1.9 Score=34.92 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=37.2
Q ss_pred cCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEe
Q 029545 99 DDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQ 164 (191)
Q Consensus 99 ~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~ 164 (191)
..+|+.+++..+.||+.|-..+=.+-..-..|.++.+..-.-+.. -.-..+||++|..
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~~l~~~~S~~~--------d~~pn~Ptl~F~~ 113 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNFSLEYHYSDPY--------DNYPNTPTLIFNN 113 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhcCCeeeEEeecCcc--------cCCCCCCeEEEec
Confidence 468999999999999999876555555555666663222211111 1224788888753
No 246
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=88.73 E-value=1.3 Score=29.94 Aligned_cols=70 Identities=14% Similarity=0.089 Sum_probs=53.3
Q ss_pred cEEEEEEcCCChhhcchhHHHHHHHhhC-CC-cEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCeEEEEEeCC
Q 029545 103 PAIFYFTAAWCGPCKFIWPVIGELSAKH-PH-VTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGA 175 (191)
Q Consensus 103 ~vlV~F~a~wC~~C~~~~p~~~~la~~~-~~-v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~ 175 (191)
.++=.|.|..-+.++.....+.++.+++ ++ +.+-.||+.++ +++++.++|-++||++-.. -....++.|.
T Consensus 4 ~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~q--P~lAE~~~IvATPtLIK~~-P~P~rriiGd 75 (87)
T TIGR02654 4 YVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKN--PQLAEEDKILATPTLSKIL-PPPVRKIIGD 75 (87)
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccC--HhHHhHCCEEEecHHhhcC-CCCcceeecc
Confidence 4555677777788888888888876654 44 77778899998 9999999999999987543 3455677775
No 247
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=88.63 E-value=0.79 Score=32.46 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=26.0
Q ss_pred EEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCc
Q 029545 106 FYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK 143 (191)
Q Consensus 106 V~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~ 143 (191)
..|+.++|+.|++....+++. ++.+-.+|+.++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~ 34 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN-----GIEYQFIDIGED 34 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCceEEEecCCC
Confidence 468999999999998888763 667777887654
No 248
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=88.61 E-value=1.3 Score=27.69 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=37.1
Q ss_pred EEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCC--cchHHHHHhcCCCcccEEEEEeCCeE
Q 029545 106 FYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQ--KGLESTLSKLNISAVPTFLFFQHGEK 168 (191)
Q Consensus 106 V~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~--~~~~~l~~~~~I~~~Pt~~~~~~G~~ 168 (191)
..|+.++|+.|++..-.+.+..-. +....++... ....++.+......+|++.. .+|..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~-~~~~~ 62 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGID---VPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL-DDGTV 62 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCC---ceEEEeecccCccCCHHHHhhCCCCCCCEEEe-CCCCE
Confidence 357888999999988887765322 3444555432 11245555556678999974 34443
No 249
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=87.78 E-value=0.84 Score=33.17 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=25.4
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCc
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK 143 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~ 143 (191)
+..|+.++|+.|++....+++. ++.+-.+|+.++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-----gi~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-----DIPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCcEEeeccCC
Confidence 5678999999999988777654 566666776543
No 250
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=86.91 E-value=8.3 Score=26.80 Aligned_cols=94 Identities=11% Similarity=0.023 Sum_probs=57.9
Q ss_pred eEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCC-CcEEEEEECCCcchHHHHHhcCCCcccE
Q 029545 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP-HVTTYKIDIDQKGLESTLSKLNISAVPT 159 (191)
Q Consensus 81 ~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~-~v~~~~vd~d~~~~~~l~~~~~I~~~Pt 159 (191)
+..+.+.+++++++. +.++.+||-|+..--+ .....+.++|..+. ++.|+...- ..+..++++. .|.
T Consensus 2 v~~i~s~~ele~f~~---~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~~-----~~~~~~~~~~-~~~ 69 (107)
T cd03068 2 SKQLQTLKQVQEFLR---DGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTFD-----SEIFKSLKVS-PGQ 69 (107)
T ss_pred ceEcCCHHHHHHHHh---cCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEECh-----HHHHHhcCCC-CCc
Confidence 457788889988764 2325677777766433 45677888888884 487754322 3666788875 566
Q ss_pred EEEEeCC-------eEEEEEeCC--CH-HHHHHHHHH
Q 029545 160 FLFFQHG-------EKVAEIVGA--DV-SRLKTTMEQ 186 (191)
Q Consensus 160 ~~~~~~G-------~~~~~~~G~--~~-~~l~~~i~~ 186 (191)
+++|+.- .....+.|. +. ++|.+||++
T Consensus 70 vvl~rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 70 LVVFQPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred eEEECcHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 7767222 122234443 33 448888865
No 251
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=86.89 E-value=1 Score=37.61 Aligned_cols=129 Identities=12% Similarity=0.102 Sum_probs=70.1
Q ss_pred CCCCCCCCccccccCCCCCCccCCCCCcccccccccCC-----CCCCCCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcC
Q 029545 37 NTTVPKIPSFRNYIPASSSQSQSQMLPSLQFHRTLFSS-----PDGPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAA 111 (191)
Q Consensus 37 ~~~v~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~-----~~~~~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~ 111 (191)
.-.|++|||+++|..+--....|.+. |...+. ......+.+..+.++++.... .+++.++.+|-..
T Consensus 67 ky~I~KyPTlKvfrnG~~~~rEYRg~------RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~---p~K~~vIgyF~~k 137 (375)
T KOG0912|consen 67 KYHINKYPTLKVFRNGEMMKREYRGQ------RSVEALIEFIEKQLSDPINEFESLDQLQNLDI---PSKRTVIGYFPSK 137 (375)
T ss_pred hhccccCceeeeeeccchhhhhhccc------hhHHHHHHHHHHHhccHHHHHHhHHHHHhhhc---cccceEEEEeccC
Confidence 46789999999999875544333222 222221 223444666666666666542 3556777777766
Q ss_pred CChhhcchhHHHHHHHhhCCC-cEEE--EEECCCcchHHHHHhcCCCcccEEEEEeCCeEEE--EEeCC--CHHHHHHHH
Q 029545 112 WCGPCKFIWPVIGELSAKHPH-VTTY--KIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVA--EIVGA--DVSRLKTTM 184 (191)
Q Consensus 112 wC~~C~~~~p~~~~la~~~~~-v~~~--~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~~~~--~~~G~--~~~~l~~~i 184 (191)
..+.-..+ .+++..+.+ ..|. .-|.... ..-.+.+ +++|+.+.... .+.|. +-+.+..||
T Consensus 138 dspey~~~----~kva~~lr~dc~f~V~~gD~~~~--------~~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi 204 (375)
T KOG0912|consen 138 DSPEYDNL----RKVASLLRDDCVFLVGFGDLLKP--------HEPPGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWI 204 (375)
T ss_pred CCchHHHH----HHHHHHHhhccEEEeeccccccC--------CCCCCCc-eEEeCCCcCCcCcccccccccHHHHHHHH
Confidence 65554433 444444443 3322 1122221 1222333 34444333222 47887 899999999
Q ss_pred HHH
Q 029545 185 EQL 187 (191)
Q Consensus 185 ~~~ 187 (191)
++-
T Consensus 205 ~dK 207 (375)
T KOG0912|consen 205 QDK 207 (375)
T ss_pred Hhc
Confidence 864
No 252
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=85.15 E-value=3.3 Score=26.06 Aligned_cols=58 Identities=14% Similarity=0.132 Sum_probs=36.6
Q ss_pred EEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCc--chHHHHHhcCCCcccEEEEEeCCeE
Q 029545 106 FYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK--GLESTLSKLNISAVPTFLFFQHGEK 168 (191)
Q Consensus 106 V~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~--~~~~l~~~~~I~~~Pt~~~~~~G~~ 168 (191)
..|+.++|+.|++..-.+++..-. +....+|.... ..+++.+......+|++.. +|..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~---~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~ 61 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLE---LNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD--NGFV 61 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCC---CEEEEecCccCCcCCHHHHhhCcCCCCCEEEE--CCEE
Confidence 468889999999877777665322 44455554332 2356666666678999963 4543
No 253
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=85.08 E-value=1.7 Score=33.31 Aligned_cols=35 Identities=31% Similarity=0.546 Sum_probs=27.1
Q ss_pred HHHHHhcCCCcccEEEEEeCCeEEEEEeCC-CHHHHHHHH
Q 029545 146 ESTLSKLNISAVPTFLFFQHGEKVAEIVGA-DVSRLKTTM 184 (191)
Q Consensus 146 ~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~i 184 (191)
...+.+.||.++||+++ +|+. .+.|. +.+.+.+.|
T Consensus 165 ~~~a~~~gv~G~Pt~vv--~g~~--~~~G~~~~~~~~~~i 200 (201)
T cd03024 165 EARARQLGISGVPFFVF--NGKY--AVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHCCCCcCCEEEE--CCeE--eecCCCCHHHHHHHh
Confidence 46677899999999998 6653 35688 888887766
No 254
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=84.64 E-value=1.9 Score=32.81 Aligned_cols=44 Identities=16% Similarity=0.292 Sum_probs=30.9
Q ss_pred CCCcEEEEEEcCCC-hhhcchhHHHHHHHh----hCCCcEEEEEECCCc
Q 029545 100 DSLPAIFYFTAAWC-GPCKFIWPVIGELSA----KHPHVTTYKIDIDQK 143 (191)
Q Consensus 100 ~~k~vlV~F~a~wC-~~C~~~~p~~~~la~----~~~~v~~~~vd~d~~ 143 (191)
.+|+++|.|.-+.| ..|-.+...+.++.+ +..++.++.|.+|.+
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~ 99 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPE 99 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTT
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCC
Confidence 47899999999999 468766666655444 433588888888854
No 255
>PRK12559 transcriptional regulator Spx; Provisional
Probab=84.46 E-value=0.71 Score=33.62 Aligned_cols=33 Identities=18% Similarity=0.334 Sum_probs=24.0
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCC
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQ 142 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~ 142 (191)
+..|+.++|+.|++....+++. ++.+-.+|+.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----gi~~~~~di~~ 34 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-----QIDYTEKNIVS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCeEEEEeeC
Confidence 5679999999999988777654 45555566544
No 256
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=84.29 E-value=7.1 Score=31.86 Aligned_cols=90 Identities=13% Similarity=0.202 Sum_probs=54.6
Q ss_pred CCCcEEEEEEcCCChh-hcchhHHHHHHHhhC---CC----cEEEEEECCCcc------------------------hHH
Q 029545 100 DSLPAIFYFTAAWCGP-CKFIWPVIGELSAKH---PH----VTTYKIDIDQKG------------------------LES 147 (191)
Q Consensus 100 ~~k~vlV~F~a~wC~~-C~~~~p~~~~la~~~---~~----v~~~~vd~d~~~------------------------~~~ 147 (191)
-+|.++++|.=+.||. |=.....+.++.++. ++ -.|+.||-..+. ..+
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~ 217 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQ 217 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHH
Confidence 3688999999999985 655555544444332 23 246666643321 236
Q ss_pred HHHhcCCCccc-------------EEEEE---eCCeEEEEEeCC-CHHHHHHHHHHHhc
Q 029545 148 TLSKLNISAVP-------------TFLFF---QHGEKVAEIVGA-DVSRLKTTMEQLYK 189 (191)
Q Consensus 148 l~~~~~I~~~P-------------t~~~~---~~G~~~~~~~G~-~~~~l~~~i~~~~~ 189 (191)
+|++|.|..-+ ++++| .+|+.+..+.-. +++++.+-|.+++.
T Consensus 218 vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~ 276 (280)
T KOG2792|consen 218 VAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVA 276 (280)
T ss_pred HHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHH
Confidence 78888775322 34444 377766654333 89999888877654
No 257
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=84.14 E-value=2.2 Score=33.39 Aligned_cols=44 Identities=14% Similarity=0.167 Sum_probs=35.4
Q ss_pred HHHHHhcCCCcccEEEEEeCCeEEEEEeC--C-CHHHHHHHHHHHhc
Q 029545 146 ESTLSKLNISAVPTFLFFQHGEKVAEIVG--A-DVSRLKTTMEQLYK 189 (191)
Q Consensus 146 ~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G--~-~~~~l~~~i~~~~~ 189 (191)
..+++++++.++||+++-+||+.-.--.| . +++.+..++.+.+.
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~~ 210 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRLA 210 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHHh
Confidence 35788999999999999999987665556 2 77888888877653
No 258
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.68 E-value=10 Score=26.37 Aligned_cols=65 Identities=22% Similarity=0.280 Sum_probs=38.4
Q ss_pred cCCCcEEEEEEc---CCChhhcchhHHHHHHHhhCCC-cEEEEEECCCcchHHHHHhcC-CCcccEE-EEEeCCeEEE
Q 029545 99 DDSLPAIFYFTA---AWCGPCKFIWPVIGELSAKHPH-VTTYKIDIDQKGLESTLSKLN-ISAVPTF-LFFQHGEKVA 170 (191)
Q Consensus 99 ~~~k~vlV~F~a---~wC~~C~~~~p~~~~la~~~~~-v~~~~vd~d~~~~~~l~~~~~-I~~~Pt~-~~~~~G~~~~ 170 (191)
++++.++.+=.+ |-||...+....+... + +.|..||+-.+ +++.+... ....||+ -+|-+|+.+.
T Consensus 13 ~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~-----g~v~~~~vnVL~d--~eiR~~lk~~s~WPT~PQLyi~GEfvG 83 (105)
T COG0278 13 KENPVVLFMKGTPEFPQCGFSAQAVQILSAC-----GVVDFAYVDVLQD--PEIRQGLKEYSNWPTFPQLYVNGEFVG 83 (105)
T ss_pred hcCceEEEecCCCCCCCCCccHHHHHHHHHc-----CCcceeEEeeccC--HHHHhccHhhcCCCCCceeeECCEEec
Confidence 344444433344 4566665555444433 3 78999999887 67665442 2466766 4566898664
No 259
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=83.42 E-value=13 Score=26.21 Aligned_cols=86 Identities=13% Similarity=0.080 Sum_probs=61.5
Q ss_pred CCcEEEEEEcCCChhhcchhHHHHHHHhhCC---CcEEEEEECCCcchHHHH----HhcCCC-cccEEEEEe--CC-eEE
Q 029545 101 SLPAIFYFTAAWCGPCKFIWPVIGELSAKHP---HVTTYKIDIDQKGLESTL----SKLNIS-AVPTFLFFQ--HG-EKV 169 (191)
Q Consensus 101 ~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~---~v~~~~vd~d~~~~~~l~----~~~~I~-~~Pt~~~~~--~G-~~~ 169 (191)
+...++-|--+--+.-.++.+.+.++|+++. ++.++.||-|.- +-+. +.|+|. .-|.+-+.+ +. ..-
T Consensus 20 ~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~F--Pllv~yWektF~IDl~~PqIGVV~vtdadSvW 97 (120)
T cd03074 20 DGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDF--PLLVPYWEKTFGIDLFRPQIGVVNVTDADSVW 97 (120)
T ss_pred CCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccC--chhhHHHHhhcCcccCCCceeeEeccccccee
Confidence 4577888988999999999999999999875 489999998875 4333 345654 358776663 22 222
Q ss_pred EEEeCC----CHHHHHHHHHHHh
Q 029545 170 AEIVGA----DVSRLKTTMEQLY 188 (191)
Q Consensus 170 ~~~~G~----~~~~l~~~i~~~~ 188 (191)
.+..+. +.++|.+||+.++
T Consensus 98 ~~m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 98 MEMDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred EecccccccCcHHHHHHHHHhhC
Confidence 333222 7899999998764
No 260
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=83.15 E-value=3.7 Score=37.04 Aligned_cols=70 Identities=14% Similarity=0.187 Sum_probs=45.4
Q ss_pred HhhhhcCCCcEEEEEEcCCChhhcchhHH-H--HHHHhhCCCcEEEEEECCCcchHHHHH--------hcCCCcccEEEE
Q 029545 94 LGKVKDDSLPAIFYFTAAWCGPCKFIWPV-I--GELSAKHPHVTTYKIDIDQKGLESTLS--------KLNISAVPTFLF 162 (191)
Q Consensus 94 l~~~~~~~k~vlV~F~a~wC~~C~~~~p~-~--~~la~~~~~v~~~~vd~d~~~~~~l~~--------~~~I~~~Pt~~~ 162 (191)
..+++.++||+++-..-+.|-.|.-|+.+ | ++.++.. +-.|+.|++|.++-+++-+ ..|--+.|--+|
T Consensus 105 f~kar~enkpifLsvgystchwchvmekesfeneet~~il-nenfv~ikVDREERPDVDK~YM~Fv~assg~GGWPmsV~ 183 (786)
T KOG2244|consen 105 FNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEIL-NENFVKIKVDREERPDVDKLYMAFVVASSGGGGWPMSVF 183 (786)
T ss_pred HHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHH-hhhhhhhccChhhcCchHHHHHHHHHhccCCCCCceeEE
Confidence 33455779999999999999999987653 2 2343333 2245667777665555433 446668887666
Q ss_pred Ee
Q 029545 163 FQ 164 (191)
Q Consensus 163 ~~ 164 (191)
+.
T Consensus 184 LT 185 (786)
T KOG2244|consen 184 LT 185 (786)
T ss_pred eC
Confidence 63
No 261
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=81.49 E-value=0.66 Score=32.80 Aligned_cols=34 Identities=15% Similarity=0.276 Sum_probs=25.4
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCc
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK 143 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~ 143 (191)
+..|+.++|+.|++....+++. ++.+-.+|+.++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-----gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-----QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCceEEEecCCC
Confidence 4568889999999988888764 566666776543
No 262
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=79.47 E-value=3 Score=31.47 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=24.8
Q ss_pred HHHHHhcCCCcccEEEEEeCCeEEEEEeCC-CHHHHHHHH
Q 029545 146 ESTLSKLNISAVPTFLFFQHGEKVAEIVGA-DVSRLKTTM 184 (191)
Q Consensus 146 ~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~i 184 (191)
...+.++||.++||+++ +|+ .+.|. ..+.+.+.|
T Consensus 157 ~~~a~~~gi~gvPtfvv--~g~---~~~G~~~l~~~~~~l 191 (192)
T cd03022 157 TEEAIARGVFGVPTFVV--DGE---MFWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHHcCCCcCCeEEE--CCe---eecccccHHHHHHHh
Confidence 35677899999999998 776 44577 566666554
No 263
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=78.73 E-value=13 Score=28.31 Aligned_cols=43 Identities=16% Similarity=0.184 Sum_probs=30.7
Q ss_pred CCCcEEEEEEcCCChhhcchhHHHHHHHhhCC--CcEEEEEECCC
Q 029545 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQ 142 (191)
Q Consensus 100 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~--~v~~~~vd~d~ 142 (191)
.++.+||.=-|+-|+.-..--..+.+|.++|. ++.++..-|..
T Consensus 33 rGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQ 77 (171)
T KOG1651|consen 33 RGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQ 77 (171)
T ss_pred CCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEecccc
Confidence 36788888888888888766667777777775 36666666643
No 264
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=78.50 E-value=7.5 Score=33.48 Aligned_cols=131 Identities=18% Similarity=0.268 Sum_probs=78.9
Q ss_pred CCCCCCccccccCCCCCCccCCCCCcccccccccCC------CCCCCCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcCC
Q 029545 39 TVPKIPSFRNYIPASSSQSQSQMLPSLQFHRTLFSS------PDGPSNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAW 112 (191)
Q Consensus 39 ~v~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~------~~~~~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~w 112 (191)
....-|+|.+-.++......+...| ..+.+-|. ..+.++- -+++.-+.++.+ ++..-+=-|++-.
T Consensus 57 ~~~RkpSF~i~r~g~~~gv~FAglP---lGHEftSlVLaLlqv~G~ppk----~~q~vieqik~i--~g~~~FETy~Slt 127 (520)
T COG3634 57 DLVRKPSFSINRPGEDQGVRFAGLP---LGHEFTSLVLALLQVGGHPPK----EDQDVIEQIKAI--DGDFHFETYFSLT 127 (520)
T ss_pred ccccCCceeecCCCcccceEEecCc---ccchHHHHHHHHHHhcCCCCc----hhHHHHHHHHhc--CCceeEEEEEEee
Confidence 4456677777777766544444443 33444433 1111111 123333333322 2445566677889
Q ss_pred ChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCeEEEEEeCC-CHHHHHHHH
Q 029545 113 CGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGA-DVSRLKTTM 184 (191)
Q Consensus 113 C~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~i 184 (191)
|..|-.....+.-.+-..|++.-..||---. ++-.+.-+|-++||+++ ||+... .|. +.++|.+.|
T Consensus 128 C~nCPDVVQALN~msvlNp~I~H~~IdGa~F--q~Evear~IMaVPtvfl--nGe~fg--~GRmtleeilaki 194 (520)
T COG3634 128 CHNCPDVVQALNLMSVLNPRIKHTAIDGALF--QDEVEARNIMAVPTVFL--NGEEFG--QGRMTLEEILAKI 194 (520)
T ss_pred ccCChHHHHHHHHHHhcCCCceeEEecchhh--HhHHHhccceecceEEE--cchhhc--ccceeHHHHHHHh
Confidence 9999888888888887888888888886654 45566679999999876 787543 244 555554444
No 265
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=78.30 E-value=0.63 Score=31.15 Aligned_cols=52 Identities=15% Similarity=0.125 Sum_probs=40.0
Q ss_pred EEcCCChhhcchhHHHHHHHhhC-CC-cEEEEEECCCcchHHHHHhcCCCcccEEE
Q 029545 108 FTAAWCGPCKFIWPVIGELSAKH-PH-VTTYKIDIDQKGLESTLSKLNISAVPTFL 161 (191)
Q Consensus 108 F~a~wC~~C~~~~p~~~~la~~~-~~-v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~ 161 (191)
|-+..-+........+..+.+.+ ++ +.+-.||+.++ +++++.++|-++||++
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~--P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQ--PELAEEDRIVATPTLI 56 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTS--HSHHTTTEEECHHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccC--HhHHhHCCeeecceEe
Confidence 33444455566777778887764 43 88888999998 9999999999999976
No 266
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=78.26 E-value=18 Score=26.03 Aligned_cols=61 Identities=20% Similarity=0.199 Sum_probs=38.6
Q ss_pred hHHHHHHHhhCCCcEEEEEECCCcc--------hHHHHHhcCCCcccEEEEEeCCeEEEEEeCC--CHHHHHHHHHH
Q 029545 120 WPVIGELSAKHPHVTTYKIDIDQKG--------LESTLSKLNISAVPTFLFFQHGEKVAEIVGA--DVSRLKTTMEQ 186 (191)
Q Consensus 120 ~p~~~~la~~~~~v~~~~vd~d~~~--------~~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~--~~~~l~~~i~~ 186 (191)
...++.+.+ .++.+.+.+...+. ..++.++-|...+|-+++ ||+.+.. |. +.++|.+|+.-
T Consensus 30 a~~~~~Lk~--~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dGeiv~~--G~YPt~eEl~~~~~i 100 (123)
T PF06953_consen 30 AADLDWLKE--QGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DGEIVKT--GRYPTNEELAEWLGI 100 (123)
T ss_dssp HHHHHHHHH--TT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TTEEEEE--SS---HHHHHHHHT-
T ss_pred HHHHHHHHh--CCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CCEEEEe--cCCCCHHHHHHHhCC
Confidence 334444433 37999999988752 235567779999997776 9987764 65 89999999754
No 267
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=77.45 E-value=1.1 Score=32.73 Aligned_cols=34 Identities=15% Similarity=0.285 Sum_probs=24.5
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCc
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK 143 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~ 143 (191)
+..|+.++|+.|++....+++- ++.+-.+|+.++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH-----QLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc-----CCCeEEEECCCC
Confidence 4578889999999987777543 566666776543
No 268
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=75.18 E-value=11 Score=23.32 Aligned_cols=59 Identities=15% Similarity=0.176 Sum_probs=35.3
Q ss_pred EEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCC--cchHHHHHhcCCCcccEEEEEeCCeEE
Q 029545 106 FYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQ--KGLESTLSKLNISAVPTFLFFQHGEKV 169 (191)
Q Consensus 106 V~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~--~~~~~l~~~~~I~~~Pt~~~~~~G~~~ 169 (191)
..|+.++|+.|.+..-.+++..-. +....+|... +...++.+...-..+|++.. +|..+
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~i 62 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGIP---YEWVEVDILKGETRTPEFLALNPNGEVPVLEL--DGRVL 62 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCC---cEEEEecCCCcccCCHHHHHhCCCCCCCEEEE--CCEEE
Confidence 357789999999877776654322 4444555422 12245555445568999974 46543
No 269
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=75.00 E-value=23 Score=24.06 Aligned_cols=70 Identities=23% Similarity=0.320 Sum_probs=40.4
Q ss_pred CChhhcchhH------HH-HHHHhhCCC--cEEEEEECCCcch----HHHHHhc--CCCcccEEEEEeCCeEEEEEeCC-
Q 029545 112 WCGPCKFIWP------VI-GELSAKHPH--VTTYKIDIDQKGL----ESTLSKL--NISAVPTFLFFQHGEKVAEIVGA- 175 (191)
Q Consensus 112 wC~~C~~~~p------~~-~~la~~~~~--v~~~~vd~d~~~~----~~l~~~~--~I~~~Pt~~~~~~G~~~~~~~G~- 175 (191)
-|+.|..+=. .| ..+.++|++ +.+-.||+..... ++++++. .---+|-+++ +|+.+.. |.
T Consensus 8 ~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i--~~eiV~E--Gnp 83 (93)
T PF07315_consen 8 ICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVI--NDEIVAE--GNP 83 (93)
T ss_dssp --GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEE--TTEEEEE--SS-
T ss_pred cchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEE--CCEEEec--CCc
Confidence 5999987522 22 245678987 8899999987522 2344433 2336898876 8988874 66
Q ss_pred CHHHHHHHHH
Q 029545 176 DVSRLKTTME 185 (191)
Q Consensus 176 ~~~~l~~~i~ 185 (191)
....+.++|+
T Consensus 84 ~LK~I~~~~e 93 (93)
T PF07315_consen 84 QLKDIYEEME 93 (93)
T ss_dssp -HHHHHHHHH
T ss_pred cHHHHHHhhC
Confidence 6666666653
No 270
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=74.01 E-value=1.7 Score=30.72 Aligned_cols=33 Identities=9% Similarity=0.077 Sum_probs=23.5
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCC
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQ 142 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~ 142 (191)
+..|+.+.|..|++....+++- ++.+-.+|+.+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~-----gi~~~~~d~~~ 34 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA-----GHEVEVRDLLT 34 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEeehhc
Confidence 4578999999999888777654 45555566544
No 271
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=73.90 E-value=14 Score=24.46 Aligned_cols=59 Identities=17% Similarity=0.239 Sum_probs=35.4
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCeE
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEK 168 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~~ 168 (191)
+..|+.+.|+.|.+..-.+++..-. +.+..++.... ..++.+......+|++.. ++|..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl~---~~~~~v~~~~~-~~~~~~~np~~~vPvL~~-~~g~~ 77 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNIP---HEVININLKDK-PDWFLEKNPQGKVPALEI-DEGKV 77 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCC---CeEEEeCCCCC-cHHHHhhCCCCCcCEEEE-CCCCE
Confidence 5557788899999877666554222 34444554332 134555556678999974 22543
No 272
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=72.12 E-value=7 Score=32.29 Aligned_cols=100 Identities=14% Similarity=0.052 Sum_probs=58.6
Q ss_pred CHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCc---chHHHHHhcCCCcccEEEE
Q 029545 86 SGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK---GLESTLSKLNISAVPTFLF 162 (191)
Q Consensus 86 s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~---~~~~l~~~~~I~~~Pt~~~ 162 (191)
+.++|++++..+++........++.++|..-..-.....+++++. ++.++--+-... ...++|++.+. |++.+
T Consensus 166 ~~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~v-D~miVIGg~~SsNT~kL~eia~~~~~---~t~~I 241 (281)
T PF02401_consen 166 SVEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEV-DAMIVIGGKNSSNTRKLAEIAKEHGK---PTYHI 241 (281)
T ss_dssp -HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCS-SEEEEES-TT-HHHHHHHHHHHHCTT---CEEEE
T ss_pred cHHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhC-CEEEEecCCCCccHHHHHHHHHHhCC---CEEEe
Confidence 456777777766655555555699999999988888888888764 333332233222 12366777654 66665
Q ss_pred ----------EeCCeEEEEEeCC-CHHHHHHHHHHHhc
Q 029545 163 ----------FQHGEKVAEIVGA-DVSRLKTTMEQLYK 189 (191)
Q Consensus 163 ----------~~~G~~~~~~~G~-~~~~l~~~i~~~~~ 189 (191)
|++.+.+.-..|+ +++.+.+.+.+.++
T Consensus 242 e~~~el~~~~l~~~~~VGItaGASTP~~ii~eVi~~l~ 279 (281)
T PF02401_consen 242 ETADELDPEWLKGVKKVGITAGASTPDWIIEEVIDRLE 279 (281)
T ss_dssp SSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHHHHHHH
T ss_pred CCccccCHhHhCCCCEEEEEccCCCCHHHHHHHHHHHh
Confidence 2344577777788 78888777766654
No 273
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=71.53 E-value=5.9 Score=29.95 Aligned_cols=27 Identities=26% Similarity=0.612 Sum_probs=24.7
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCC
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHP 131 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~ 131 (191)
|.+|+.+.|+.|-...+.+.++.++++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 678999999999999999999999884
No 274
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=71.39 E-value=7.2 Score=31.32 Aligned_cols=45 Identities=11% Similarity=0.139 Sum_probs=35.9
Q ss_pred cCCCcEEEEEEcCCChhhcchhHHHHHHHhh-----CCCcEEEEEECCCc
Q 029545 99 DDSLPAIFYFTAAWCGPCKFIWPVIGELSAK-----HPHVTTYKIDIDQK 143 (191)
Q Consensus 99 ~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~-----~~~v~~~~vd~d~~ 143 (191)
..+..+||-+-..+|..|..-...++.|..+ +++|.|+.||-...
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~ 73 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGE 73 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCc
Confidence 3578999999999999999988888777643 45699999986543
No 275
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=71.31 E-value=36 Score=26.96 Aligned_cols=67 Identities=18% Similarity=0.237 Sum_probs=43.5
Q ss_pred CChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCeEEEEEeCCCHHHHHHHHHHHhc
Q 029545 112 WCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTMEQLYK 189 (191)
Q Consensus 112 wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~~~~~l~~~i~~~~~ 189 (191)
.|+.|+.+.-.+. .+..-+++-.||+.+. .+++.+-..-...|.+.+ +|+.+ .+.+.++++|++.+.
T Consensus 20 dcpf~qr~~m~L~---~k~~~f~vttVd~~~k-p~~f~~~sp~~~~P~l~~--d~~~~-----tDs~~Ie~~Lee~l~ 86 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKGVPFKVTTVDLSRK-PEWFLDISPGGKPPVLKF--DEKWV-----TDSDKIEEFLEEKLP 86 (221)
T ss_pred CChhHHHHHHHHH---HcCCCceEEEeecCCC-cHHHHhhCCCCCCCeEEe--CCcee-----ccHHHHHHHHHHhcC
Confidence 4777777666555 3333478888999886 245556566677787765 44322 177788888887653
No 276
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=69.63 E-value=20 Score=30.69 Aligned_cols=77 Identities=18% Similarity=0.260 Sum_probs=44.6
Q ss_pred Chhhcch----hHHHHHHHhhCCC----cEEEEEECCCcc-hHHHHHhcCCCccc-EEEEEeCCeEEEEEeCC-CHHHHH
Q 029545 113 CGPCKFI----WPVIGELSAKHPH----VTTYKIDIDQKG-LESTLSKLNISAVP-TFLFFQHGEKVAEIVGA-DVSRLK 181 (191)
Q Consensus 113 C~~C~~~----~p~~~~la~~~~~----v~~~~vd~d~~~-~~~l~~~~~I~~~P-t~~~~~~G~~~~~~~G~-~~~~l~ 181 (191)
||.|.+- .....++.+.+.+ ++++..=|--+. -..-...+||.+-+ ..++|.+|+.+.++.+. -.+.|.
T Consensus 271 CPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv~~~~~~~~l~ 350 (360)
T PRK00366 271 CPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIKTLPEENIVEELE 350 (360)
T ss_pred CCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEeeeeChHhHHHHHH
Confidence 5555433 3333445444443 666655553111 12334567887655 77888999999887765 455666
Q ss_pred HHHHHHhc
Q 029545 182 TTMEQLYK 189 (191)
Q Consensus 182 ~~i~~~~~ 189 (191)
+.|+++.+
T Consensus 351 ~~i~~~~~ 358 (360)
T PRK00366 351 AEIEAYAE 358 (360)
T ss_pred HHHHHHHh
Confidence 66665543
No 277
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=67.52 E-value=60 Score=25.64 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=22.5
Q ss_pred HHHHHhcCCCcccEEEEEeCCeEEEEEeCC
Q 029545 146 ESTLSKLNISAVPTFLFFQHGEKVAEIVGA 175 (191)
Q Consensus 146 ~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~ 175 (191)
+.+-++|+|+.+|++++... ...+.+.|.
T Consensus 152 P~lF~~F~I~~VPafVv~C~-~~yD~I~GN 180 (212)
T PRK13730 152 PTLFSQYGIRSVPALVVFCS-QGYDIIRGN 180 (212)
T ss_pred HHHHHhcCCccccEEEEEcC-CCCCEEEec
Confidence 78899999999999998743 334566675
No 278
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=67.22 E-value=35 Score=28.49 Aligned_cols=99 Identities=13% Similarity=0.094 Sum_probs=60.3
Q ss_pred CHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCc---chHHHHHhcCCCcccEEEE
Q 029545 86 SGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK---GLESTLSKLNISAVPTFLF 162 (191)
Q Consensus 86 s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~---~~~~l~~~~~I~~~Pt~~~ 162 (191)
+.++|++++..+++...-+.+.++.+.|..-..-.....+|+++. ++.++.-.-... ...++|++++ .||+.+
T Consensus 167 ~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~v-D~miVVGg~~SsNT~kL~~i~~~~~---~~t~~I 242 (298)
T PRK01045 167 SVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQA-DLVIVVGSKNSSNSNRLREVAEEAG---APAYLI 242 (298)
T ss_pred cHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhC-CEEEEECCCCCccHHHHHHHHHHHC---CCEEEE
Confidence 466777777766554444444458999999988888888998865 433332232222 2335666664 455554
Q ss_pred ----------EeCCeEEEEEeCC-CHHHHHHHHHHHh
Q 029545 163 ----------FQHGEKVAEIVGA-DVSRLKTTMEQLY 188 (191)
Q Consensus 163 ----------~~~G~~~~~~~G~-~~~~l~~~i~~~~ 188 (191)
|++-+.+.-..|+ +++.+.+.+...+
T Consensus 243 e~~~el~~~~l~~~~~VGitaGASTP~~li~eV~~~l 279 (298)
T PRK01045 243 DDASEIDPEWFKGVKTVGVTAGASAPEWLVQEVIARL 279 (298)
T ss_pred CChHHCcHHHhcCCCEEEEEecCCCCHHHHHHHHHHH
Confidence 2333456666687 7777766655544
No 279
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=66.53 E-value=21 Score=22.62 Aligned_cols=59 Identities=10% Similarity=0.110 Sum_probs=36.1
Q ss_pred EEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCc--chHHHHHhcCCCcccEEEEEeCCeEE
Q 029545 106 FYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK--GLESTLSKLNISAVPTFLFFQHGEKV 169 (191)
Q Consensus 106 V~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~--~~~~l~~~~~I~~~Pt~~~~~~G~~~ 169 (191)
..|+.+.|+.|++..-.+++..- .+.+..+|.... ..+++.+--.-..+|++. .+|..+
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl---~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~~l 62 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGL---RCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDNII 62 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCC---CCEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCEEE
Confidence 46788889999777655554422 245566665332 124566555666899996 466543
No 280
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=65.72 E-value=10 Score=28.61 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=18.3
Q ss_pred HHHHHhcCCCcccEEEEEeCCe
Q 029545 146 ESTLSKLNISAVPTFLFFQHGE 167 (191)
Q Consensus 146 ~~l~~~~~I~~~Pt~~~~~~G~ 167 (191)
...+.++||.++||+++.+++.
T Consensus 159 ~~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 159 QKLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHcCCCccCEEEEEeCCe
Confidence 3567789999999999987665
No 281
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=65.19 E-value=46 Score=23.52 Aligned_cols=83 Identities=12% Similarity=0.042 Sum_probs=47.4
Q ss_pred EEEEEcC--CChhhcchhHHHHHHHhhCC--CcEEEEEECCCc----------chHHHHHhcCCCccc--EEEEEeCCeE
Q 029545 105 IFYFTAA--WCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQK----------GLESTLSKLNISAVP--TFLFFQHGEK 168 (191)
Q Consensus 105 lV~F~a~--wC~~C~~~~p~~~~la~~~~--~v~~~~vd~d~~----------~~~~l~~~~~I~~~P--t~~~~~~G~~ 168 (191)
+|.++|| .-+.=+.....+.+-...+. ++.++.+--+.. ....+.++|++..-. .+++=++|.+
T Consensus 12 ~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG~v 91 (118)
T PF13778_consen 12 LLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDGGV 91 (118)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCCcE
Confidence 3334454 33334445555555333443 355555522221 123788999966333 3444478988
Q ss_pred EEEEeCC-CHHHHHHHHHHH
Q 029545 169 VAEIVGA-DVSRLKTTMEQL 187 (191)
Q Consensus 169 ~~~~~G~-~~~~l~~~i~~~ 187 (191)
..+.... +.++|-+.|++.
T Consensus 92 K~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 92 KLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred EEecCCCCCHHHHHHHHhCC
Confidence 8887776 999999988754
No 282
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=64.33 E-value=3.6 Score=29.03 Aligned_cols=44 Identities=11% Similarity=0.259 Sum_probs=29.3
Q ss_pred EEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCc-----chHHHHHhcCC
Q 029545 106 FYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK-----GLESTLSKLNI 154 (191)
Q Consensus 106 V~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~-----~~~~l~~~~~I 154 (191)
..|+.+.|..|++....+++. ++.+-.+|+.++ +...+.+..|+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~~p~t~~el~~~l~~~g~ 50 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK-----GIEPEVVKYLKNPPTKSELEAIFAKLGL 50 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEeccCCCcCHHHHHHHHHHcCC
Confidence 468899999999988888753 455556665443 33455555543
No 283
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=63.91 E-value=44 Score=27.61 Aligned_cols=100 Identities=13% Similarity=0.088 Sum_probs=61.2
Q ss_pred CHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCc---chHHHHHhcCCCcccEEEE
Q 029545 86 SGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK---GLESTLSKLNISAVPTFLF 162 (191)
Q Consensus 86 s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~---~~~~l~~~~~I~~~Pt~~~ 162 (191)
+.++|+.++..+++.....-+.++.+.|..-+.-.....+++++. ++.++--.-... ...++|++.+ .||+.+
T Consensus 165 ~~~~~~~i~~~l~~~~~~~~~~~~nTIC~AT~~RQ~a~~~la~~v-D~miVVGg~nSsNT~rL~ei~~~~~---~~t~~I 240 (280)
T TIGR00216 165 SQEDTKEIVAELKARVPQKEVPVFNTICYATQNRQDAVKELAPEV-DLMIVIGGKNSSNTTRLYEIAEEHG---PPSYLI 240 (280)
T ss_pred cHHHHHHHHHHHHHhCCCcCCCCCCCcccccHHHHHHHHHHHhhC-CEEEEECCCCCchHHHHHHHHHHhC---CCEEEE
Confidence 456777776655443211334567899999988888899998875 433332222222 2335676665 566665
Q ss_pred ----------EeCCeEEEEEeCC-CHHHHHHHHHHHhc
Q 029545 163 ----------FQHGEKVAEIVGA-DVSRLKTTMEQLYK 189 (191)
Q Consensus 163 ----------~~~G~~~~~~~G~-~~~~l~~~i~~~~~ 189 (191)
|++.+.+.-..|+ +++.+.+.+.+.++
T Consensus 241 e~~~el~~~~l~~~~~VGiTAGASTP~~li~eVi~~l~ 278 (280)
T TIGR00216 241 ETAEELPEEWLKGVKVVGITAGASTPDWIIEEVIRKIK 278 (280)
T ss_pred CChHHCCHHHhCCCCEEEEEecCCCCHHHHHHHHHHHH
Confidence 2334556767788 78887777666554
No 284
>COG3411 Ferredoxin [Energy production and conversion]
Probab=63.91 E-value=21 Score=22.60 Aligned_cols=32 Identities=9% Similarity=0.168 Sum_probs=25.5
Q ss_pred cccEEEEEeCCeEEEEEeCCCHHHHHHHHHHHhcC
Q 029545 156 AVPTFLFFQHGEKVAEIVGADVSRLKTTMEQLYKK 190 (191)
Q Consensus 156 ~~Pt~~~~~~G~~~~~~~G~~~~~l~~~i~~~~~~ 190 (191)
.=|++++|.+| .-|.+.++++..+++++++.+
T Consensus 16 ~gPvl~vYpeg---vWY~~V~p~~a~rIv~~hl~~ 47 (64)
T COG3411 16 DGPVLVVYPEG---VWYTRVDPEDARRIVQSHLLG 47 (64)
T ss_pred cCCEEEEecCC---eeEeccCHHHHHHHHHHHHhC
Confidence 45999999999 344566999999999998753
No 285
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=62.01 E-value=13 Score=26.28 Aligned_cols=76 Identities=12% Similarity=0.284 Sum_probs=45.8
Q ss_pred CChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcC--CCcccEEEEEeCCe---EEEEEeCC----CHHHHHH
Q 029545 112 WCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLN--ISAVPTFLFFQHGE---KVAEIVGA----DVSRLKT 182 (191)
Q Consensus 112 wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~--I~~~Pt~~~~~~G~---~~~~~~G~----~~~~l~~ 182 (191)
.|++|..++..+.-.-.--..+.+..|+..+.. ..+....| =++.|++++-.+.. ......|. +.+.|..
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR-~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~ 101 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPR-QAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILR 101 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCch-HHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHH
Confidence 499998888777543333334888899988762 44444444 36899999753221 11223332 6677776
Q ss_pred HHHHHh
Q 029545 183 TMEQLY 188 (191)
Q Consensus 183 ~i~~~~ 188 (191)
.+.+..
T Consensus 102 ~La~r~ 107 (112)
T PF11287_consen 102 YLAERH 107 (112)
T ss_pred HHHHHc
Confidence 665543
No 286
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=61.25 E-value=86 Score=25.26 Aligned_cols=65 Identities=15% Similarity=0.161 Sum_probs=39.5
Q ss_pred HHHHHHhhhhcCCCcEEEEEEcCC------ChhhcchhHHHHHHHhhCC-CcEEEEEECCCc--chHHHHHhcCCCc
Q 029545 89 EFNSSLGKVKDDSLPAIFYFTAAW------CGPCKFIWPVIGELSAKHP-HVTTYKIDIDQK--GLESTLSKLNISA 156 (191)
Q Consensus 89 ~f~~~l~~~~~~~k~vlV~F~a~w------C~~C~~~~p~~~~la~~~~-~v~~~~vd~d~~--~~~~l~~~~~I~~ 156 (191)
+-.++++.+ ++++-|.+|.+- -..=..+...+++.+...+ ++.+-.||.+.+ ...+.++++||..
T Consensus 15 ~T~~~L~~L---~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~ 88 (271)
T PF09822_consen 15 QTKKVLKSL---DEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQP 88 (271)
T ss_pred HHHHHHHhC---CCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCc
Confidence 344555443 447776666664 3344455555666666667 499999998654 2234455688886
No 287
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=60.71 E-value=80 Score=24.76 Aligned_cols=80 Identities=19% Similarity=0.383 Sum_probs=51.0
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCC-------c--ch-------HHHHHhcCCC--cccEEEEEeCC
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQ-------K--GL-------ESTLSKLNIS--AVPTFLFFQHG 166 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~-------~--~~-------~~l~~~~~I~--~~Pt~~~~~~G 166 (191)
|=.|++..|..|=-....+.+++.+ ++|..+...+|= + .. ...++.++.. .+|.+++ ||
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~-~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV--nG 78 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAAR-PDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV--NG 78 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHH-TSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE--TT
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcC-CCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE--CC
Confidence 3358888999999999999999998 476666555541 1 00 1344555544 4787776 88
Q ss_pred eEEEEEeCCCHHHHHHHHHHHhc
Q 029545 167 EKVAEIVGADVSRLKTTMEQLYK 189 (191)
Q Consensus 167 ~~~~~~~G~~~~~l~~~i~~~~~ 189 (191)
... ..|.+.+++...|++...
T Consensus 79 ~~~--~~g~~~~~~~~ai~~~~~ 99 (202)
T PF06764_consen 79 REH--RVGSDRAAVEAAIQAARA 99 (202)
T ss_dssp TEE--EETT-HHHHHHHHHHHHH
T ss_pred eee--eeccCHHHHHHHHHHhhc
Confidence 854 578899999998887754
No 288
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=59.84 E-value=6.9 Score=27.89 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=18.9
Q ss_pred EEEEEcCCChhhcchhHHHHHHH
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELS 127 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la 127 (191)
+..|+.|-|..|++....+++..
T Consensus 3 itiy~~p~C~t~rka~~~L~~~g 25 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEHG 25 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHcC
Confidence 56789999999999888887553
No 289
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=58.83 E-value=13 Score=25.67 Aligned_cols=57 Identities=19% Similarity=0.265 Sum_probs=36.2
Q ss_pred EEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCC--cccEEEE-EeCCe
Q 029545 108 FTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNIS--AVPTFLF-FQHGE 167 (191)
Q Consensus 108 F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~--~~Pt~~~-~~~G~ 167 (191)
||-.+|+-|......+.+... ...+.+ +++..+...++.+.++++ ..-+.+. .++|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~-~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR-GGRLRF--VDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC-CCCEEE--EECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 789999999998888877722 222444 566433224556677765 3454444 46777
No 290
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=58.26 E-value=4.9 Score=28.19 Aligned_cols=43 Identities=14% Similarity=0.243 Sum_probs=27.7
Q ss_pred EEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCc-----chHHHHHhcC
Q 029545 106 FYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK-----GLESTLSKLN 153 (191)
Q Consensus 106 V~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~-----~~~~l~~~~~ 153 (191)
..|+.+.|..|++....+++. ++.+-.+|+-++ +...+.+..+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~~~~t~~el~~~l~~~~ 49 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA-----GIEPEIVEYLKTPPTAAELRELLAKLG 49 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEecccCCcCHHHHHHHHHHcC
Confidence 468899999999987777644 455556665443 3334444444
No 291
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=57.96 E-value=16 Score=24.06 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=21.4
Q ss_pred cccEEEEEe-CCeEEEEEe--CCCHHHHHHHHHHHh
Q 029545 156 AVPTFLFFQ-HGEKVAEIV--GADVSRLKTTMEQLY 188 (191)
Q Consensus 156 ~~Pt~~~~~-~G~~~~~~~--G~~~~~l~~~i~~~~ 188 (191)
.-|++++++ +|+.+.++. +.+.+.+.+++++..
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHhC
Confidence 458999997 787666544 449999999998764
No 292
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=57.87 E-value=87 Score=25.92 Aligned_cols=99 Identities=18% Similarity=0.049 Sum_probs=60.8
Q ss_pred cCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCc---chHHHHHhcCCCcccEEE
Q 029545 85 ESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK---GLESTLSKLNISAVPTFL 161 (191)
Q Consensus 85 ~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~---~~~~l~~~~~I~~~Pt~~ 161 (191)
.+.++|+.++..++..-.-+ .++.++|..-..-.....+|+++. ++.++.-.-+.. ...++|++.+ .||+.
T Consensus 167 ~~~~~~~~iv~~l~~~~~~~--~v~~TIC~aT~~RQ~a~~~La~~v-D~miVVGg~~SsNT~rL~eia~~~~---~~t~~ 240 (281)
T PRK12360 167 IIPELWEDILNVIKLKSKEL--VFFNTICSATKKRQESAKELSKEV-DVMIVIGGKHSSNTQKLVKICEKNC---PNTFH 240 (281)
T ss_pred CcHHHHHHHHHHHHHhCccc--ccCCCcchhhhhHHHHHHHHHHhC-CEEEEecCCCCccHHHHHHHHHHHC---CCEEE
Confidence 35677777777655433222 357999999998888899998775 433333333322 2346677764 45665
Q ss_pred EE----------eCCeEEEEEeCC-CHHHHHHHHHHHhc
Q 029545 162 FF----------QHGEKVAEIVGA-DVSRLKTTMEQLYK 189 (191)
Q Consensus 162 ~~----------~~G~~~~~~~G~-~~~~l~~~i~~~~~ 189 (191)
+- ++-+.+.-..|+ +|+.+.+.+.+.++
T Consensus 241 Ie~~~el~~~~~~~~~~VGitaGASTP~~li~eV~~~l~ 279 (281)
T PRK12360 241 IETADELDLEMLKDYKIIGITAGASTPDWIIEEVIKKIK 279 (281)
T ss_pred ECChHHCCHHHhCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 42 233456666687 78877776665554
No 293
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=55.86 E-value=61 Score=21.91 Aligned_cols=65 Identities=18% Similarity=0.256 Sum_probs=40.5
Q ss_pred CCChhhcchhHHHHHHHhhCCC--cEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCeEEEEEeCCCHHHHHHHHHHHh
Q 029545 111 AWCGPCKFIWPVIGELSAKHPH--VTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTMEQLY 188 (191)
Q Consensus 111 ~wC~~C~~~~p~~~~la~~~~~--v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~~~~~l~~~i~~~~ 188 (191)
.+|+.|++..=.+.+. + +.+..||.... ..++.+..-...+|++. ++|..+. +...+.+.|++..
T Consensus 20 g~cpf~~rvrl~L~eK-----gi~ye~~~vd~~~~-p~~~~~~nP~g~vPvL~--~~~~~i~-----eS~~I~eYLde~~ 86 (91)
T cd03061 20 GNCPFCQRLFMVLWLK-----GVVFNVTTVDMKRK-PEDLKDLAPGTQPPFLL--YNGEVKT-----DNNKIEEFLEETL 86 (91)
T ss_pred CCChhHHHHHHHHHHC-----CCceEEEEeCCCCC-CHHHHHhCCCCCCCEEE--ECCEEec-----CHHHHHHHHHHHc
Confidence 5799998877666544 4 44455555443 24555555567899665 4554332 6677777777764
No 294
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=55.83 E-value=44 Score=27.03 Aligned_cols=84 Identities=19% Similarity=0.209 Sum_probs=56.4
Q ss_pred CcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCC------------cch----HHHHHhcCCCcccEEEEEeC
Q 029545 102 LPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQ------------KGL----ESTLSKLNISAVPTFLFFQH 165 (191)
Q Consensus 102 k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~------------~~~----~~l~~~~~I~~~Pt~~~~~~ 165 (191)
.-||=.|++..|..|=-....+.+++++= ++.-....+|= .++ ....+.|+-.+++|=-.+-|
T Consensus 42 ~~VVELfTSQGCsSCPPAd~~l~k~a~~~-~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvn 120 (261)
T COG5429 42 LGVVELFTSQGCSSCPPADANLAKLADDP-GVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVN 120 (261)
T ss_pred ceEEEEeecCCcCCCChHHHHHHHhccCC-CEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheee
Confidence 34555677889999988888888887763 44333333221 011 24567788888877766668
Q ss_pred CeEEEEEeCCCHHHHHHHHHHHh
Q 029545 166 GEKVAEIVGADVSRLKTTMEQLY 188 (191)
Q Consensus 166 G~~~~~~~G~~~~~l~~~i~~~~ 188 (191)
|.... .|.++.++++.|+..-
T Consensus 121 Gr~~~--~Gad~~~i~~~i~a~~ 141 (261)
T COG5429 121 GRVHA--NGADPGAIEDAIAAMA 141 (261)
T ss_pred chhhh--cCCCHHHHHHHHHHhh
Confidence 87543 5889999998887654
No 295
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=54.36 E-value=76 Score=26.71 Aligned_cols=57 Identities=16% Similarity=0.266 Sum_probs=42.3
Q ss_pred cEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEE
Q 029545 103 PAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLF 162 (191)
Q Consensus 103 ~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~ 162 (191)
..||++ .||.|++....++.+.+..+.+.++-||+..+.....++++.-..+|.+-+
T Consensus 78 ~~lIEL---GsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v 134 (319)
T TIGR03439 78 SMLVEL---GSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRC 134 (319)
T ss_pred CEEEEE---CCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEE
Confidence 467776 578899999999988765556899999999876666666665456675544
No 296
>cd07973 Spt4 Transcription elongation factor Spt4. Spt4 is a transcription elongation factor. Three transcription-elongation factors Spt4, Spt5, and Spt6, are conserved among eukaryotes and are essential for transcription via the modulation of chromatin structure. It is known that Spt4, Spt5, and Spt6 are general transcription-elongation factors, controlling transcription both positively and negatively in important regulatory and developmental roles. Spt4 functions entirely in the context of the Spt4-Spt5 heterodimer and it has been found only as a complex to Spt5 in Yeast and Human. Spt4 is a small protein that has zinc finger at the N-terminus. Spt5 is a large protein that has several interesting structural features of an acidic N-terminus, a single NGN domain, five or six KOW domains, and a set of simple C-termianl repeats. Spt4 binds to Spt5 NGN domain. Unlike Spt5, Spt4 is not essential for viability in yeast, however Spt4 is critical for normal function of the Spt4-Spt5 compl
Probab=54.11 E-value=22 Score=24.60 Aligned_cols=69 Identities=16% Similarity=0.186 Sum_probs=43.8
Q ss_pred EEcCCChhhcchh-------HHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCeEEEEEeCCCHHHH
Q 029545 108 FTAAWCGPCKFIW-------PVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRL 180 (191)
Q Consensus 108 F~a~wC~~C~~~~-------p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~~~~~l 180 (191)
|....|+.|..+. ...+-+...+.|+..+ +|-++ ..+++..++.. +..|.......|.-++++
T Consensus 18 f~~~gCpnC~~~l~~~g~~~~v~~~tT~~f~G~i~i-~dP~~---SwVAk~l~i~~------~~pG~YAi~V~g~lp~~i 87 (98)
T cd07973 18 FERDGCPNCEGYLDMKGNHERVYDCTSPNFEGIIAL-MDPEK---SWVARWQRIDK------FVPGIYAISVSGRLPEDI 87 (98)
T ss_pred ccCCCCCCCcchhccCCCccccccccCCCcceEEEE-ECCch---hHHHHHhCCCC------CCCCeEEEEecCcCCHHH
Confidence 7889999996321 1223345566665444 34443 68888888862 335666666778777777
Q ss_pred HHHHHH
Q 029545 181 KTTMEQ 186 (191)
Q Consensus 181 ~~~i~~ 186 (191)
.+.++.
T Consensus 88 ~~~l~~ 93 (98)
T cd07973 88 VEELES 93 (98)
T ss_pred HHHHHH
Confidence 777665
No 297
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=53.32 E-value=37 Score=28.84 Aligned_cols=77 Identities=17% Similarity=0.231 Sum_probs=46.8
Q ss_pred ChhhcchhHHH----HHHHhhCCC----cEEEEEECCCcch-HHHHHhcCCCc--ccEEEEEeCCeEEEEEeCC-CHHHH
Q 029545 113 CGPCKFIWPVI----GELSAKHPH----VTTYKIDIDQKGL-ESTLSKLNISA--VPTFLFFQHGEKVAEIVGA-DVSRL 180 (191)
Q Consensus 113 C~~C~~~~p~~----~~la~~~~~----v~~~~vd~d~~~~-~~l~~~~~I~~--~Pt~~~~~~G~~~~~~~G~-~~~~l 180 (191)
||.|-+..-.+ .++.+.+.+ ++++.+-|--+.. ...-..+||.+ -|...+|.+|+.+.+..+. -.++|
T Consensus 264 CP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~~~~~~~eel 343 (361)
T COG0821 264 CPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKLPEEDIVEEL 343 (361)
T ss_pred CCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEecChhhHHHHH
Confidence 88887654433 344444322 4444444332210 12234466653 5899999999999998887 56788
Q ss_pred HHHHHHHhc
Q 029545 181 KTTMEQLYK 189 (191)
Q Consensus 181 ~~~i~~~~~ 189 (191)
...++++.+
T Consensus 344 ~~~i~~~~~ 352 (361)
T COG0821 344 EALIEAYAE 352 (361)
T ss_pred HHHHHHHHH
Confidence 888777654
No 298
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=53.03 E-value=33 Score=24.03 Aligned_cols=81 Identities=20% Similarity=0.183 Sum_probs=51.0
Q ss_pred CCCcEEEEEEcCCChhhcchhHHHHHHHhhCC--CcEEEEEECCCcc------hHHHHHhcCCCcccEEEEEeCCeEEEE
Q 029545 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQKG------LESTLSKLNISAVPTFLFFQHGEKVAE 171 (191)
Q Consensus 100 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~--~v~~~~vd~d~~~------~~~l~~~~~I~~~Pt~~~~~~G~~~~~ 171 (191)
.++++||.=.|+-|+.-. ....++++.++|. ++.++..-|+.-. ..++..-..-..-+++-+|....
T Consensus 20 ~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~~~~~~~~F~vf~ki~---- 94 (108)
T PF00255_consen 20 KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFCKEKFGVTFPVFEKID---- 94 (108)
T ss_dssp TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHHCHCHT-SSEEBS-BB----
T ss_pred CCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHHHhccCCcccceEEEE----
Confidence 478999999999999988 6678899999886 5888888887531 22332222222335555554332
Q ss_pred EeCCCHHHHHHHHH
Q 029545 172 IVGADVSRLKTTME 185 (191)
Q Consensus 172 ~~G~~~~~l~~~i~ 185 (191)
..|.+...|-+||+
T Consensus 95 VnG~~ahPly~~LK 108 (108)
T PF00255_consen 95 VNGPDAHPLYKYLK 108 (108)
T ss_dssp SSSTTB-HHHHHHH
T ss_pred ecCCCCcHHHHHhC
Confidence 24556666666653
No 299
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=52.24 E-value=21 Score=27.68 Aligned_cols=38 Identities=11% Similarity=0.150 Sum_probs=23.7
Q ss_pred HHHHhcCCCcccEEEEEeCCeEEEEEeCC-CHHHHHHHH
Q 029545 147 STLSKLNISAVPTFLFFQHGEKVAEIVGA-DVSRLKTTM 184 (191)
Q Consensus 147 ~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~i 184 (191)
+.+.+.||.|+||+++=.++.....+-|. ..+.++++|
T Consensus 170 ~~A~~~Gv~GVP~fvv~~~~~~~e~fwG~Drl~~~~~~l 208 (209)
T cd03021 170 DEALKYGAFGLPWIVVTNDKGKTEMFFGSDRFEQVADFL 208 (209)
T ss_pred HHHHHcCCCCCCEEEEEcCCCCccceecCCcHHHHHHHh
Confidence 44567799999999985432222355676 455555544
No 300
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=52.03 E-value=1.1e+02 Score=23.84 Aligned_cols=88 Identities=10% Similarity=0.112 Sum_probs=53.3
Q ss_pred CCcEEEEEEc-CCChhhcchhHHHHHHHhhCC--CcEEEEEECCCcc--------------------------hHHHHHh
Q 029545 101 SLPAIFYFTA-AWCGPCKFIWPVIGELSAKHP--HVTTYKIDIDQKG--------------------------LESTLSK 151 (191)
Q Consensus 101 ~k~vlV~F~a-~wC~~C~~~~p~~~~la~~~~--~v~~~~vd~d~~~--------------------------~~~l~~~ 151 (191)
+|.+++.||= +.-.-|-.....+.+...++. |++++.+.+|... ..++++.
T Consensus 33 gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ 112 (194)
T COG0450 33 GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARA 112 (194)
T ss_pred CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHH
Confidence 3455555552 355667666666666666664 5888888877531 1377888
Q ss_pred cCCCc----c--cEEEEEe-CCeEEEEEe-----CCCHHHHHHHHHHHh
Q 029545 152 LNISA----V--PTFLFFQ-HGEKVAEIV-----GADVSRLKTTMEQLY 188 (191)
Q Consensus 152 ~~I~~----~--Pt~~~~~-~G~~~~~~~-----G~~~~~l~~~i~~~~ 188 (191)
||+-. . =.+.+++ +|....... |.+.+++...++.+.
T Consensus 113 ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAlq 161 (194)
T COG0450 113 YGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDALQ 161 (194)
T ss_pred cCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHHH
Confidence 88753 2 2344444 665544322 558888888877653
No 301
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=51.56 E-value=17 Score=31.05 Aligned_cols=74 Identities=16% Similarity=0.224 Sum_probs=42.0
Q ss_pred ChhhcchhHHH----HHHHhhCC----CcEEEEEECCCcchHHHH--HhcCCC-ccc-EEEEEeCCeEEEEE-eCC-CHH
Q 029545 113 CGPCKFIWPVI----GELSAKHP----HVTTYKIDIDQKGLESTL--SKLNIS-AVP-TFLFFQHGEKVAEI-VGA-DVS 178 (191)
Q Consensus 113 C~~C~~~~p~~----~~la~~~~----~v~~~~vd~d~~~~~~l~--~~~~I~-~~P-t~~~~~~G~~~~~~-~G~-~~~ 178 (191)
||.|-+..=.+ +++.+... +++++..=|--+. +.-+ ..||+. +-| ...+|++|+.+.+. ... -.+
T Consensus 271 CPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNG-PGEa~~AD~GiaGgg~g~~~lf~~g~~v~k~~~ee~~vd 349 (359)
T PF04551_consen 271 CPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNG-PGEAKDADIGIAGGGKGKGILFKKGEVVKKVIPEEEIVD 349 (359)
T ss_dssp ----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCC-HHHCTTSSEEEE-E-TTCEEEECTTEEEEEE-CSTCHHH
T ss_pred CCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecC-CchhhhCceeeecCCCCeEEEEECCEEEEecCCHHHHHH
Confidence 66665443333 34444443 3888888777664 3323 345666 445 58899999999987 555 467
Q ss_pred HHHHHHHHH
Q 029545 179 RLKTTMEQL 187 (191)
Q Consensus 179 ~l~~~i~~~ 187 (191)
.|.+.|+++
T Consensus 350 ~L~~~I~~~ 358 (359)
T PF04551_consen 350 ELIELIEEH 358 (359)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 777777764
No 302
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=50.46 E-value=1.1e+02 Score=23.37 Aligned_cols=64 Identities=13% Similarity=0.125 Sum_probs=38.9
Q ss_pred CCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCeEE
Q 029545 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKV 169 (191)
Q Consensus 100 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~~~ 169 (191)
++...+-.|+.++|+.|....=.+++..- .+.+..||.... .+++.+..--..+|++. .+|..+
T Consensus 6 ~~~~~~~Ly~~~~s~~~~rv~~~L~e~gl---~~e~~~v~~~~~-~~~~~~~nP~g~VPvL~--~~g~~l 69 (211)
T PRK09481 6 NKRSVMTLFSGPTDIYSHQVRIVLAEKGV---SVEIEQVEKDNL-PQDLIDLNPYQSVPTLV--DRELTL 69 (211)
T ss_pred CCCCeeEEeCCCCChhHHHHHHHHHHCCC---CCEEEeCCcccC-CHHHHHhCCCCCCCEEE--ECCEEe
Confidence 34455666777889999988866665422 245555555432 24555544456899996 456544
No 303
>PRK10853 putative reductase; Provisional
Probab=48.68 E-value=9.3 Score=27.19 Aligned_cols=33 Identities=9% Similarity=0.001 Sum_probs=23.7
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCC
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQ 142 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~ 142 (191)
+..|+.+.|..|++....+++- ++.+-.+|+-+
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~d~~k 34 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ-----GIDYRFHDYRV 34 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc-----CCCcEEeehcc
Confidence 4578889999999988888653 45555566543
No 304
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=48.07 E-value=1.3e+02 Score=23.21 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=29.6
Q ss_pred EEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCeE
Q 029545 108 FTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEK 168 (191)
Q Consensus 108 F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~~ 168 (191)
++...|++|.+..=.+... ++.+-.++++..+.....+......+|++.. .+|..
T Consensus 3 y~~~~sp~~~kvr~~L~~~-----gl~~e~~~~~~~~~~~~~~~np~g~vP~l~~-~~g~~ 57 (209)
T TIGR02182 3 YIYDHCPFCVRARMIFGLK-----NIPVEKHVLLNDDEETPIRMIGAKQVPILQK-DDGRA 57 (209)
T ss_pred ecCCCCChHHHHHHHHHHc-----CCCeEEEECCCCcchhHHHhcCCCCcceEEe-eCCeE
Confidence 4567799998766655543 4333334544332222333333467997753 45644
No 305
>PRK10387 glutaredoxin 2; Provisional
Probab=46.98 E-value=1.2e+02 Score=22.85 Aligned_cols=70 Identities=13% Similarity=0.235 Sum_probs=35.5
Q ss_pred EEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCeEEEEEeCCCHHHHHHHHHH
Q 029545 107 YFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTMEQ 186 (191)
Q Consensus 107 ~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~~~~~l~~~i~~ 186 (191)
.++.+.|++|.+..-.+++..-. +....++.... ....+......+|+++. ++|..+. +...|...|++
T Consensus 3 Ly~~~~sp~~~kv~~~L~~~gi~---y~~~~~~~~~~--~~~~~~~p~~~VPvL~~-~~g~~l~-----eS~aI~~yL~~ 71 (210)
T PRK10387 3 LYIYDHCPFCVKARMIFGLKNIP---VELIVLANDDE--ATPIRMIGQKQVPILQK-DDGSYMP-----ESLDIVHYIDE 71 (210)
T ss_pred EEeCCCCchHHHHHHHHHHcCCC---eEEEEcCCCch--hhHHHhcCCcccceEEe-cCCeEec-----CHHHHHHHHHH
Confidence 34567899998877666544222 23333333222 22223334457999853 3554432 34444444444
Q ss_pred H
Q 029545 187 L 187 (191)
Q Consensus 187 ~ 187 (191)
.
T Consensus 72 ~ 72 (210)
T PRK10387 72 L 72 (210)
T ss_pred h
Confidence 3
No 306
>PRK10026 arsenate reductase; Provisional
Probab=45.63 E-value=15 Score=27.15 Aligned_cols=44 Identities=14% Similarity=0.199 Sum_probs=28.5
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCC-----cchHHHHHhcC
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQ-----KGLESTLSKLN 153 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~-----~~~~~l~~~~~ 153 (191)
+..|+.+.|..|++....+++- ++.+-.+|+-+ ++...+.++.+
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~-----gi~~~~~d~~~~ppt~~eL~~~l~~~g 52 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS-----GTEPTIIHYLETPPTRDELVKLIADMG 52 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCcEEEeeeCCCcCHHHHHHHHHhCC
Confidence 5678899999999988888654 44555555433 23344455444
No 307
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=44.63 E-value=16 Score=26.01 Aligned_cols=21 Identities=5% Similarity=0.014 Sum_probs=16.3
Q ss_pred CCCCC--CCCccccccCC-CCCCc
Q 029545 37 NTTVP--KIPSFRNYIPA-SSSQS 57 (191)
Q Consensus 37 ~~~v~--~~p~~~~~~~~-~~~~~ 57 (191)
..+|+ +||+|.+|..+ +..+.
T Consensus 73 ~y~I~~~gyPTl~lF~~g~~~~~~ 96 (116)
T cd03007 73 RYKLDKESYPVIYLFHGGDFENPV 96 (116)
T ss_pred HhCCCcCCCCEEEEEeCCCcCCCc
Confidence 46898 99999999977 44443
No 308
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.40 E-value=1e+02 Score=21.19 Aligned_cols=79 Identities=23% Similarity=0.334 Sum_probs=46.1
Q ss_pred EEEEEcC-CChhhcch------hHHHH-HHHhhCCC--cEEEEEECCCcch----HHHHHhcCC--CcccEEEEEeCCeE
Q 029545 105 IFYFTAA-WCGPCKFI------WPVIG-ELSAKHPH--VTTYKIDIDQKGL----ESTLSKLNI--SAVPTFLFFQHGEK 168 (191)
Q Consensus 105 lV~F~a~-wC~~C~~~------~p~~~-~la~~~~~--v~~~~vd~d~~~~----~~l~~~~~I--~~~Pt~~~~~~G~~ 168 (191)
++.|.|. -|..|..+ ...++ .+.++|++ +++-.||+..... .+++++..- --+|-+++ +++.
T Consensus 7 l~VyGae~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPlivv--edei 84 (106)
T COG4837 7 LVVYGAEVICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLIVV--EDEI 84 (106)
T ss_pred EEEecchhhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceEEEE--cceE
Confidence 4555554 69999765 22233 34557887 8888999964321 233333221 25787765 6776
Q ss_pred EEEEeCC-CHHHHHHHHHHH
Q 029545 169 VAEIVGA-DVSRLKTTMEQL 187 (191)
Q Consensus 169 ~~~~~G~-~~~~l~~~i~~~ 187 (191)
+.. |. ...++.+.+.+.
T Consensus 85 Vae--GnprlKdiy~~m~d~ 102 (106)
T COG4837 85 VAE--GNPRLKDIYRVMDDK 102 (106)
T ss_pred eec--CCchHHHHHHHHHHh
Confidence 653 55 666676665543
No 309
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=42.17 E-value=1.5e+02 Score=22.44 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=30.8
Q ss_pred chhHHHHHHHhhCCCcEEEEEECCCc--------chHHHHHhcCCCcccEEEEE
Q 029545 118 FIWPVIGELSAKHPHVTTYKIDIDQK--------GLESTLSKLNISAVPTFLFF 163 (191)
Q Consensus 118 ~~~p~~~~la~~~~~v~~~~vd~d~~--------~~~~l~~~~~I~~~Pt~~~~ 163 (191)
.++..|+...+.. ++.++.||..+. +..++..+-...++|-+++-
T Consensus 77 rfrsmWerycR~v-~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLG 129 (186)
T KOG0075|consen 77 RFRSMWERYCRGV-SAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLG 129 (186)
T ss_pred cHHHHHHHHhhcC-cEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEec
Confidence 4566777776554 466677886543 34567777788899999873
No 310
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=41.87 E-value=84 Score=19.44 Aligned_cols=59 Identities=12% Similarity=0.158 Sum_probs=34.6
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCC--cchHHHHHhcCCCcccEEEEEeCCeE
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQ--KGLESTLSKLNISAVPTFLFFQHGEK 168 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~--~~~~~l~~~~~I~~~Pt~~~~~~G~~ 168 (191)
+..|+.+.|+.|.+..-.+++..-. +....++... +..+++.+......+|++. .+|..
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~--~~g~~ 62 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVD---YELVPVDLTKGEHKSPEHLARNPFGQIPALE--DGDLK 62 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCC---cEEEEeCccccccCCHHHHhhCCCCCCCEEE--ECCEE
Confidence 3455667799998887777654322 3444455432 1124555556667899875 35543
No 311
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=41.22 E-value=41 Score=28.66 Aligned_cols=57 Identities=14% Similarity=0.204 Sum_probs=43.3
Q ss_pred cEEEEEECCCcchHHHHHhcCCCcccEEEEEe--CCeEEEEEeCC-CHHHHHHHHHHHhc
Q 029545 133 VTTYKIDIDQKGLESTLSKLNISAVPTFLFFQ--HGEKVAEIVGA-DVSRLKTTMEQLYK 189 (191)
Q Consensus 133 v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~--~G~~~~~~~G~-~~~~l~~~i~~~~~ 189 (191)
-.+..|..|..+-..+..-|.+..+|.+.+++ .|+.+.+..|. .+++|..-+++++.
T Consensus 131 ~~wllV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~ 190 (356)
T KOG1364|consen 131 QRWLLVLDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFID 190 (356)
T ss_pred ceEEEEeeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHHh
Confidence 44555566665557888889999999888885 88988888887 77777777776654
No 312
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=40.80 E-value=48 Score=21.90 Aligned_cols=30 Identities=30% Similarity=0.476 Sum_probs=23.5
Q ss_pred ccEEEEEeCCeEEEEEeCC-CHHHHHHHHHHHh
Q 029545 157 VPTFLFFQHGEKVAEIVGA-DVSRLKTTMEQLY 188 (191)
Q Consensus 157 ~Pt~~~~~~G~~~~~~~G~-~~~~l~~~i~~~~ 188 (191)
-.|+.+|..|+.+- .|+ +.+++.+.+++++
T Consensus 49 ~~t~~IF~sGki~i--tGaks~~~~~~a~~~i~ 79 (86)
T PF00352_consen 49 KATVLIFSSGKIVI--TGAKSEEEAKKAIEKIL 79 (86)
T ss_dssp TEEEEEETTSEEEE--EEESSHHHHHHHHHHHH
T ss_pred cEEEEEEcCCEEEE--EecCCHHHHHHHHHHHH
Confidence 46888999999765 577 8888888877765
No 313
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=40.38 E-value=1.9e+02 Score=22.97 Aligned_cols=71 Identities=14% Similarity=0.102 Sum_probs=42.6
Q ss_pred CCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHh-cCCCcccEEEEEeCCeEEEEE
Q 029545 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSK-LNISAVPTFLFFQHGEKVAEI 172 (191)
Q Consensus 100 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~-~~I~~~Pt~~~~~~G~~~~~~ 172 (191)
.++.-+..=|||++|--..|...-.++.++--+|.++.|..... ++.... -|...+|...+...|....++
T Consensus 3 rGrLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~vethgR--~et~~l~~gLe~iP~~~i~y~g~~~~E~ 74 (211)
T PF02702_consen 3 RGRLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVETHGR--PETEALLEGLEVIPRKKIEYRGRTLEEM 74 (211)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---TT---HHHHHHHCTS-B---EEEEETTEEEEE-
T ss_pred CccEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecCCCc--HHHHHHHcCCCcCCCeeEeeCCEecccC
Confidence 35566666678999988888888888888776788888876653 444333 478889988888888776543
No 314
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=38.77 E-value=17 Score=26.24 Aligned_cols=33 Identities=12% Similarity=0.081 Sum_probs=23.4
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCC
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQ 142 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~ 142 (191)
+..|+-+.|..|++....+++- ++.+-.+|+-+
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~-----gi~~~~~d~~~ 35 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKAS-----GHDVEVQDILK 35 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCcEEEeccC
Confidence 5678889999999988888654 44455555433
No 315
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=37.53 E-value=1.8e+02 Score=26.99 Aligned_cols=98 Identities=14% Similarity=0.103 Sum_probs=58.0
Q ss_pred cCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCc---chHHHHHhcCCCcccEEE
Q 029545 85 ESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK---GLESTLSKLNISAVPTFL 161 (191)
Q Consensus 85 ~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~---~~~~l~~~~~I~~~Pt~~ 161 (191)
.+.++|..++..++.....+ .++.++|..-..-.....+++++. ++.++.-.-... ...++|++.+ .||+.
T Consensus 164 ~~~~~~~~~~~~l~~~~~~~--~~~~tiC~at~~Rq~a~~~la~~~-d~~~vvGg~~SsNt~~L~~i~~~~~---~~~~~ 237 (647)
T PRK00087 164 EKQENFEKVLKELKKKGKEV--KVFNTICNATEVRQEAAEKLAKKV-DVMIVVGGKNSSNTTKLYEICKSNC---TNTIH 237 (647)
T ss_pred CcHHHHHHHHHHHHHhCCCc--ccCCCcchhhhhHHHHHHHHHhhC-CEEEEECCCCCccHHHHHHHHHHHC---CCEEE
Confidence 34567777776665443333 346999999988888888888764 333332222222 1335676654 56666
Q ss_pred E----------EeCCeEEEEEeCC-CHHHHHHHHHHHh
Q 029545 162 F----------FQHGEKVAEIVGA-DVSRLKTTMEQLY 188 (191)
Q Consensus 162 ~----------~~~G~~~~~~~G~-~~~~l~~~i~~~~ 188 (191)
+ |++-+.+.-..|+ +|+.+.+.+...+
T Consensus 238 ie~~~el~~~~~~~~~~vgitagaStP~~~i~~v~~~l 275 (647)
T PRK00087 238 IENAGELPEEWFKGVKIIGVTAGASTPDWIIEEVIKKM 275 (647)
T ss_pred ECChHHCCHHHhCCCCEEEEEeccCCCHHHHHHHHHHH
Confidence 4 2333456666787 7776665554443
No 316
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=37.37 E-value=72 Score=25.01 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=31.9
Q ss_pred CCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEE--CCCcchHHHHHhcCC
Q 029545 101 SLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKID--IDQKGLESTLSKLNI 154 (191)
Q Consensus 101 ~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd--~d~~~~~~l~~~~~I 154 (191)
..--+..|-...|+.|......+. .....+.++.|+ .|.+....-+.+.+|
T Consensus 108 ~~~rlalFvkd~C~~C~~~~~~l~---a~~~~~Diylvgs~~dD~~Ir~WA~~~~I 160 (200)
T TIGR03759 108 GGGRLALFVKDDCVACDARVQRLL---ADNAPLDLYLVGSQGDDERIRQWANRHQI 160 (200)
T ss_pred CCCeEEEEeCCCChHHHHHHHHHh---cCCCceeEEEecCCCCHHHHHHHHHHcCC
Confidence 345677788899999987766662 223348888888 444333334444444
No 317
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=37.29 E-value=97 Score=22.02 Aligned_cols=35 Identities=31% Similarity=0.458 Sum_probs=22.9
Q ss_pred HHhcCCCcccEEEEEeCCeEEEEEeCC-CHHHHHHHHHHH
Q 029545 149 LSKLNISAVPTFLFFQHGEKVAEIVGA-DVSRLKTTMEQL 187 (191)
Q Consensus 149 ~~~~~I~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~i~~~ 187 (191)
+-.+||+.+|.++| |++.+- .|. |...-...++++
T Consensus 76 Aw~lgi~k~PAVVf--D~~~VV--YG~tDV~~A~~~~~~~ 111 (114)
T PF07511_consen 76 AWSLGITKYPAVVF--DDRYVV--YGETDVARALARIEQW 111 (114)
T ss_pred HHHhCccccCEEEE--cCCeEE--ecccHHHHHHHHHHHH
Confidence 45789999999997 455443 366 655555555443
No 318
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=32.39 E-value=2.5e+02 Score=22.51 Aligned_cols=73 Identities=16% Similarity=0.248 Sum_probs=47.4
Q ss_pred EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCeEEEEEeCC-CHHHHHHH
Q 029545 105 IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGA-DVSRLKTT 183 (191)
Q Consensus 105 lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~ 183 (191)
+=.|.-..|..|-.+...+++- .-.++|++ +|.... +.++-+-+|-++|.+++ +|+.+. .+. ++++++..
T Consensus 13 VkI~~HktC~ssy~Lf~~L~nk-gll~~Vki--i~a~~p--~f~~~~~~V~SvP~Vf~--DGel~~--~dpVdp~~ies~ 83 (265)
T COG5494 13 VKIFTHKTCVSSYMLFEYLENK-GLLGKVKI--IDAELP--PFLAFEKGVISVPSVFI--DGELVY--ADPVDPEEIESI 83 (265)
T ss_pred EEEEEecchHHHHHHHHHHHhc-CCCCCceE--EEcCCC--hHHHhhcceeecceEEE--cCeEEE--cCCCCHHHHHHH
Confidence 3445566788886665555431 01344666 455554 67777778999998765 898664 344 88888887
Q ss_pred HHH
Q 029545 184 MEQ 186 (191)
Q Consensus 184 i~~ 186 (191)
++-
T Consensus 84 ~~G 86 (265)
T COG5494 84 LSG 86 (265)
T ss_pred HcC
Confidence 754
No 319
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=32.30 E-value=2.1e+02 Score=21.09 Aligned_cols=67 Identities=9% Similarity=0.140 Sum_probs=42.8
Q ss_pred CCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcc-c-EEEEEeCCeEE
Q 029545 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAV-P-TFLFFQHGEKV 169 (191)
Q Consensus 100 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~-P-t~~~~~~G~~~ 169 (191)
.+++-.|.+|.--|+-|-.....+.+.-. -..+.|+.+.-+.. ..+....++..- + ++++.++|+..
T Consensus 5 ~~~p~~vvlyDG~C~lC~~~vrfLi~~D~-~~~i~f~~~q~e~g--~~~l~~~~l~~~~~~s~~~~~~g~~~ 73 (137)
T COG3011 5 MKKPDLVVLYDGVCPLCDGWVRFLIRRDQ-GGRIRFAALQSEPG--QALLEAAGLDPEDVDSVLLVEAGQLL 73 (137)
T ss_pred CCCCCEEEEECCcchhHHHHHHHHHHhcc-CCcEEEEeccCchh--hhHHhhcCCChhhhheeeEecCCceE
Confidence 45678899999999999885555543311 11266665554443 677777777543 4 56666777654
No 320
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=32.23 E-value=2.4e+02 Score=25.31 Aligned_cols=63 Identities=17% Similarity=0.231 Sum_probs=33.9
Q ss_pred CCcEEEEEEcCC-ChhhcchhHHHHHHHhhCCCcEEEEEECC-CcchHHHHHhcCCCccc--EEEEE
Q 029545 101 SLPAIFYFTAAW-CGPCKFIWPVIGELSAKHPHVTTYKIDID-QKGLESTLSKLNISAVP--TFLFF 163 (191)
Q Consensus 101 ~k~vlV~F~a~w-C~~C~~~~p~~~~la~~~~~v~~~~vd~d-~~~~~~l~~~~~I~~~P--t~~~~ 163 (191)
-..+||.|+.+- ...=.+....++++.++++...+-.|.+. ..-....+-+.++...| +++|+
T Consensus 281 ~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~~~~fsr~~~Ld~g~~~~~~d~L~f~ 347 (499)
T PF05679_consen 281 VFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVKTGEFSRGAALDVGAKKFPPDSLLFF 347 (499)
T ss_pred eEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEecCCCccHHHHHHhhcccCCCCcEEEE
Confidence 345678888743 33233356677888888876444444444 22113344445555444 45554
No 321
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=31.50 E-value=1.2e+02 Score=20.08 Aligned_cols=40 Identities=18% Similarity=0.202 Sum_probs=25.4
Q ss_pred HHHHHhcCCCcccEEEEEeCCeEEEEEeCCCHHHHHHHHHHHh
Q 029545 146 ESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTMEQLY 188 (191)
Q Consensus 146 ~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~~~~~l~~~i~~~~ 188 (191)
..+|.++++.++ +.=..+|.......| +.++++++++.+.
T Consensus 24 ~~~A~~~gl~G~--V~N~~dg~V~i~~~G-~~~~l~~f~~~l~ 63 (91)
T PF00708_consen 24 KRIARKLGLTGW--VRNLPDGSVEIEAEG-EEEQLEEFIKWLK 63 (91)
T ss_dssp HHHHHHTT-EEE--EEE-TTSEEEEEEEE-EHHHHHHHHHHHH
T ss_pred HHHHHHhCCceE--EEECCCCEEEEEEEe-CHHHHHHHHHHHH
Confidence 477888998887 333457766666677 5566666666554
No 322
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=31.43 E-value=92 Score=22.34 Aligned_cols=57 Identities=18% Similarity=0.308 Sum_probs=38.8
Q ss_pred CCChhhcchhHHHHHHHhh----CC--C--cEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCeEEEEEeC
Q 029545 111 AWCGPCKFIWPVIGELSAK----HP--H--VTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVG 174 (191)
Q Consensus 111 ~wC~~C~~~~p~~~~la~~----~~--~--v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G 174 (191)
..|..|......+.++.+. +. | +++-++.++.. +++..+ -.-|++.+ ||+.+....|
T Consensus 13 ~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~---~~~~~~--~~S~~I~i--nG~piE~~l~ 77 (120)
T PF10865_consen 13 KTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE---EFARQP--LESPTIRI--NGRPIEDLLG 77 (120)
T ss_pred CcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH---HHhhcc--cCCCeeeE--CCEehhHhhC
Confidence 4799998777666555443 33 3 77778888774 677666 67888877 7877644333
No 323
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=31.00 E-value=1.3e+02 Score=18.42 Aligned_cols=60 Identities=13% Similarity=0.121 Sum_probs=33.2
Q ss_pred EEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCeEE
Q 029545 107 YFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKV 169 (191)
Q Consensus 107 ~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~~~ 169 (191)
.|+.+.|+.|.+..-.+....... .+....+|.... .+++.+......+|++.. .+|..+
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~~~i-~~~~~~~~~~~~-~~~~~~~~p~~~vP~l~~-~~g~~l 62 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETGLGD-DVELVLVNPWSD-DESLLAVNPLGKIPALVL-DDGEAL 62 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhCCCC-CcEEEEcCcccC-ChHHHHhCCCCCCCEEEE-CCCCEE
Confidence 467788999987766665421111 244444443222 245555555678998763 355433
No 324
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=30.62 E-value=1.4e+02 Score=18.54 Aligned_cols=57 Identities=9% Similarity=0.076 Sum_probs=34.0
Q ss_pred EEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCc--chHHHHHhcCCCcccEEEEEeCCeE
Q 029545 107 YFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK--GLESTLSKLNISAVPTFLFFQHGEK 168 (191)
Q Consensus 107 ~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~--~~~~l~~~~~I~~~Pt~~~~~~G~~ 168 (191)
.|+.+-|+.|+...-.+++..-. +....++.... ..+++.+......+|++. .+|..
T Consensus 3 ly~~~~s~~~~~v~~~l~~~g~~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~ 61 (76)
T cd03050 3 LYYDLMSQPSRAVYIFLKLNKIP---FEECPIDLRKGEQLTPEFKKINPFGKVPAIV--DGDFT 61 (76)
T ss_pred EeeCCCChhHHHHHHHHHHcCCC---cEEEEecCCCCCcCCHHHHHhCcCCCCCEEE--ECCEE
Confidence 56677888888776666554322 34555554332 124555556667899886 35543
No 325
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=29.99 E-value=3.6e+02 Score=23.26 Aligned_cols=88 Identities=11% Similarity=0.071 Sum_probs=56.2
Q ss_pred CCCcEEEEEEcCCChhhcchhHHHHHHHhhCC---CcEEEEEECCCcchHHH----HHhcCCC-cccEEEEEe--CCeEE
Q 029545 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHP---HVTTYKIDIDQKGLEST----LSKLNIS-AVPTFLFFQ--HGEKV 169 (191)
Q Consensus 100 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~---~v~~~~vd~d~~~~~~l----~~~~~I~-~~Pt~~~~~--~G~~~ 169 (191)
-+...+|-|.-.--+.-.++...+.++|+.+. ++.+++||-|.- +-+ -+.|+|. .-|.+-+.+ +-.-+
T Consensus 267 ~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~f--Pllv~yWE~tF~Idl~~PqIGvVnvtdadsv 344 (383)
T PF01216_consen 267 IDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDF--PLLVPYWEKTFGIDLSRPQIGVVNVTDADSV 344 (383)
T ss_dssp SSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG---HHHHHHHHHHHTT-TTS-EEEEEETTTSEEE
T ss_pred CCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCC--chhHHHHHhhcCccccCCceeEEeccccccc
Confidence 35577888888888999999999999999764 589999988874 433 2456664 459888775 33333
Q ss_pred E-EEeCC----CHHHHHHHHHHHhc
Q 029545 170 A-EIVGA----DVSRLKTTMEQLYK 189 (191)
Q Consensus 170 ~-~~~G~----~~~~l~~~i~~~~~ 189 (191)
. ...+. +.++|+.||+..+.
T Consensus 345 W~dm~d~~d~pt~~~LedWieDVls 369 (383)
T PF01216_consen 345 WMDMDDDDDLPTAEELEDWIEDVLS 369 (383)
T ss_dssp EC-STTTSS---HHHHHHHHHHHHC
T ss_pred hhccCCcccCCcHHHHHHHHHHHhc
Confidence 2 33332 68999999999875
No 326
>COG1582 FlgEa Uncharacterized protein, possibly involved in motility [Cell motility and secretion]
Probab=29.57 E-value=1.4e+02 Score=18.90 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=22.5
Q ss_pred CCCccc-EEEEEeCCeEEEEEeCCCHHHHHHHHHHHh
Q 029545 153 NISAVP-TFLFFQHGEKVAEIVGADVSRLKTTMEQLY 188 (191)
Q Consensus 153 ~I~~~P-t~~~~~~G~~~~~~~G~~~~~l~~~i~~~~ 188 (191)
.|..+| |.+-.-+|++.- +..+.+++.+.+.++.
T Consensus 21 ~ie~~PDttItLinGkkyv--VkEsveEVi~kI~~y~ 55 (67)
T COG1582 21 TIEAFPDTTITLINGKKYV--VKESVEEVINKIIEYR 55 (67)
T ss_pred hhhccCCcEEEEEcCcEEE--EcccHHHHHHHHHHHH
Confidence 577899 667777888542 3446777766666554
No 327
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=29.12 E-value=74 Score=21.86 Aligned_cols=41 Identities=24% Similarity=0.346 Sum_probs=26.0
Q ss_pred EEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCc-----chHHHHHhcC
Q 029545 108 FTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK-----GLESTLSKLN 153 (191)
Q Consensus 108 F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~-----~~~~l~~~~~ 153 (191)
|+.+.|..|++....+++- |+.+-.+|+.++ +..++.+..+
T Consensus 1 Y~~~~C~t~rka~~~L~~~-----gi~~~~~d~~k~p~s~~el~~~l~~~~ 46 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEEN-----GIEYEFIDYKKEPLSREELRELLSKLG 46 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHT-----T--EEEEETTTS---HHHHHHHHHHHT
T ss_pred CcCCCCHHHHHHHHHHHHc-----CCCeEeehhhhCCCCHHHHHHHHHHhc
Confidence 5778999999988888753 677778888764 2335555555
No 328
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=28.62 E-value=1.5e+02 Score=18.22 Aligned_cols=57 Identities=12% Similarity=0.167 Sum_probs=32.5
Q ss_pred CCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCeEEEEEeCCCHHHHHHHHH
Q 029545 111 AWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTME 185 (191)
Q Consensus 111 ~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~~~~~l~~~i~ 185 (191)
++|+.|.+..-.+.. .++.+-.++++... .-.-..+|++.. +|+.+. +...+.++++
T Consensus 14 s~sp~~~~v~~~L~~-----~~i~~~~~~~~~~~------~~p~g~vP~l~~--~g~~l~-----es~~I~~yL~ 70 (72)
T cd03054 14 SLSPECLKVETYLRM-----AGIPYEVVFSSNPW------RSPTGKLPFLEL--NGEKIA-----DSEKIIEYLK 70 (72)
T ss_pred CCCHHHHHHHHHHHh-----CCCceEEEecCCcc------cCCCcccCEEEE--CCEEEc-----CHHHHHHHHh
Confidence 589999888777764 35555555555431 112347898864 454332 2345555554
No 329
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=28.36 E-value=3.5e+02 Score=22.57 Aligned_cols=101 Identities=12% Similarity=0.035 Sum_probs=59.0
Q ss_pred ecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCc---chHHHHHhcCCCcccEE
Q 029545 84 IESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK---GLESTLSKLNISAVPTF 160 (191)
Q Consensus 84 i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~---~~~~l~~~~~I~~~Pt~ 160 (191)
..+.+++.+.++.++..-.-.-+-+..+=|..-.+-...+.+++.+. ++.++.-+.... ...+++++.+. |++
T Consensus 167 Tls~ddt~~Iv~~l~~r~p~~~~~~~~~ICyAT~nRQ~Avk~la~~~-Dl~iVVG~~nSSNs~rL~eiA~~~g~---~ay 242 (294)
T COG0761 167 TLSVDDTAEIVAALKERFPKIEVPPFNDICYATQNRQDAVKELAPEV-DLVIVVGSKNSSNSNRLAEIAKRHGK---PAY 242 (294)
T ss_pred ecCHHHHHHHHHHHHHhCccccCCcccccchhhhhHHHHHHHHhhcC-CEEEEECCCCCccHHHHHHHHHHhCC---CeE
Confidence 34566777766655544333355566677888877777888888774 443333333332 23466676655 776
Q ss_pred EEE----------eCCeEEEEEeCC-CHHHHHHHHHHHh
Q 029545 161 LFF----------QHGEKVAEIVGA-DVSRLKTTMEQLY 188 (191)
Q Consensus 161 ~~~----------~~G~~~~~~~G~-~~~~l~~~i~~~~ 188 (191)
++= ++-+.+.-.-|+ .++.|.+-+.+.+
T Consensus 243 lId~~~ei~~~w~~~~~~VGvTAGAStPd~lV~~Vi~~l 281 (294)
T COG0761 243 LIDDAEEIDPEWLKGVKTVGVTAGASTPDWLVQEVIAKL 281 (294)
T ss_pred EeCChHhCCHHHhcCccEEEEecCCCCCHHHHHHHHHHH
Confidence 652 222445555677 6777666555444
No 330
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=27.94 E-value=1e+02 Score=23.59 Aligned_cols=29 Identities=3% Similarity=-0.073 Sum_probs=24.9
Q ss_pred EecCHHHHHHHHhhhhcCCCcEEEEEEcC
Q 029545 83 VIESGEEFNSSLGKVKDDSLPAIFYFTAA 111 (191)
Q Consensus 83 ~i~s~~~f~~~l~~~~~~~k~vlV~F~a~ 111 (191)
.+.+.+++++.++++.+.++|.+|++..+
T Consensus 156 ~v~~~~el~~al~~al~~~gp~vIev~~~ 184 (193)
T cd03375 156 FSGDIKQLKEIIKKAIQHKGFSFVEVLSP 184 (193)
T ss_pred ecCCHHHHHHHHHHHHhcCCCEEEEEECC
Confidence 57888999999988888889999999855
No 331
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=27.46 E-value=1.2e+02 Score=25.79 Aligned_cols=66 Identities=14% Similarity=0.188 Sum_probs=34.7
Q ss_pred EcCCChhhc-chhHHHHHHHhhC---CC-cEEEEEECCCcchH-HHHHhcCCCcc-c-EEEEEeCCeEEEEEeC
Q 029545 109 TAAWCGPCK-FIWPVIGELSAKH---PH-VTTYKIDIDQKGLE-STLSKLNISAV-P-TFLFFQHGEKVAEIVG 174 (191)
Q Consensus 109 ~a~wC~~C~-~~~p~~~~la~~~---~~-v~~~~vd~d~~~~~-~l~~~~~I~~~-P-t~~~~~~G~~~~~~~G 174 (191)
.=|.|+-|. .+....+++.+.+ +. ++++.+-|--+..- .--..+||.+- + ..++|++|+.+.++.+
T Consensus 261 SCPtCGR~~~dl~~~~~~ve~~l~~~~~~l~VAVMGCvVNGPGEak~ADiGIaggg~g~~~lF~~G~~~~kv~~ 334 (346)
T TIGR00612 261 ACPSCGRTGFDVEKVVRRVQEALFHLKTPLKVAVMGCVVNGPGEAKHADIGISGGGTGSAILFKRGKPKAKQPE 334 (346)
T ss_pred ECCCCCCcCCCHHHHHHHHHHHHhcCCCCCEEEEECceecCCchhhccCeeeecCCCCceEEEECCEEeEecCH
Confidence 335555554 2333334443333 33 66666555443211 12234677654 3 6788999998776543
No 332
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=27.38 E-value=3e+02 Score=21.88 Aligned_cols=30 Identities=13% Similarity=0.092 Sum_probs=26.1
Q ss_pred EEecCHHHHHHHHhhhhcCCCcEEEEEEcC
Q 029545 82 LVIESGEEFNSSLGKVKDDSLPAIFYFTAA 111 (191)
Q Consensus 82 ~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~ 111 (191)
..+.+.+++++.++++.+.++|.||++..+
T Consensus 171 ~~v~~~~el~~al~~a~~~~gP~lIev~~~ 200 (235)
T cd03376 171 ASVAYPEDLYKKVKKALSIEGPAYIHILSP 200 (235)
T ss_pred EcCCCHHHHHHHHHHHHhCCCCEEEEEECC
Confidence 357889999999998888889999999887
No 333
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=25.70 E-value=1.8e+02 Score=20.64 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=20.3
Q ss_pred HHhcCCCcccEEEEEeCCeEEEEEeCC-CHHHHHHHH
Q 029545 149 LSKLNISAVPTFLFFQHGEKVAEIVGA-DVSRLKTTM 184 (191)
Q Consensus 149 ~~~~~I~~~Pt~~~~~~G~~~~~~~G~-~~~~l~~~i 184 (191)
+-.+||+.+|.++| |++-+- .|. |...-...+
T Consensus 77 Aw~lGi~k~PAVV~--D~~~VV--YG~~DV~~A~~~~ 109 (113)
T TIGR03757 77 AWQLGVTKIPAVVV--DRRYVV--YGETDVARALALI 109 (113)
T ss_pred HHHcCCccCCEEEE--cCCeEE--ecCccHHHHHHHH
Confidence 45789999999997 454332 365 554443333
No 334
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=25.58 E-value=2.3e+02 Score=22.66 Aligned_cols=49 Identities=12% Similarity=0.047 Sum_probs=34.6
Q ss_pred CHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECC
Q 029545 86 SGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDID 141 (191)
Q Consensus 86 s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d 141 (191)
+.+++.+.+..+.+++--++|- +-..+.+.+.+.++++|++.|+.+|..
T Consensus 42 ~~~~~~~~i~~~~~~g~dlIi~-------~g~~~~~~~~~vA~~~p~~~F~~~d~~ 90 (258)
T cd06353 42 EGADAERVLRELAAQGYDLIFG-------TSFGFMDAALKVAKEYPDVKFEHCSGY 90 (258)
T ss_pred chHhHHHHHHHHHHcCCCEEEE-------CchhhhHHHHHHHHHCCCCEEEECCCC
Confidence 4566777776655555344432 455788899999999999999888753
No 335
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=24.76 E-value=1.9e+02 Score=19.52 Aligned_cols=33 Identities=6% Similarity=0.066 Sum_probs=24.1
Q ss_pred CcccEEEEEe--CCeEEEEEeCCCHHHHHHHHHHHhcC
Q 029545 155 SAVPTFLFFQ--HGEKVAEIVGADVSRLKTTMEQLYKK 190 (191)
Q Consensus 155 ~~~Pt~~~~~--~G~~~~~~~G~~~~~l~~~i~~~~~~ 190 (191)
..=|++++|. +|. .|...+++++...+++++..
T Consensus 51 ~~gp~vvvyP~~~g~---wy~~v~p~~v~~Iv~~hl~~ 85 (97)
T cd03062 51 KFAGNVIIYPKGDGI---WYGRVTPEHVPPIVDRLILG 85 (97)
T ss_pred CcCCEEEEEeCCCee---EEeecCHHHHHHHHHHHhcC
Confidence 3569999998 553 23344999999999988753
No 336
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=24.32 E-value=2.3e+02 Score=21.36 Aligned_cols=56 Identities=16% Similarity=0.057 Sum_probs=40.1
Q ss_pred CCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCc-chHHHHHhcCCC
Q 029545 100 DSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK-GLESTLSKLNIS 155 (191)
Q Consensus 100 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~-~~~~l~~~~~I~ 155 (191)
..+.++..|=+=.-+-|......|.+.+.++.++.++.|..|-. .....|...||.
T Consensus 44 gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~~~Vl~IS~DLPFAq~RfC~aeGi~ 100 (158)
T COG2077 44 GKKKVISVFPSIDTPVCATQVRKFNEEAAKLGNTVVLCISMDLPFAQKRFCGAEGIE 100 (158)
T ss_pred CceEEEEEccCCCCchhhHHHHHHHHHHhccCCcEEEEEeCCChhHHhhhhhhcCcc
Confidence 34456666777788999999999999999999988888887752 113444444444
No 337
>KOG3782 consensus Predicted membrane protein, contains type II SA sequence [General function prediction only]
Probab=23.90 E-value=2e+02 Score=21.92 Aligned_cols=20 Identities=30% Similarity=0.619 Sum_probs=14.9
Q ss_pred CChhhcchhHHHHHH-HhhCC
Q 029545 112 WCGPCKFIWPVIGEL-SAKHP 131 (191)
Q Consensus 112 wC~~C~~~~p~~~~l-a~~~~ 131 (191)
-|+.|+.+...++.. ++.-|
T Consensus 26 ~CgaC~alVtelE~~IA~vDP 46 (189)
T KOG3782|consen 26 KCGACKALVTELEEAIAKVDP 46 (189)
T ss_pred ccchHHHHHHHHHHHHHhcCc
Confidence 599999999999754 44433
No 338
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=23.89 E-value=62 Score=22.31 Aligned_cols=38 Identities=8% Similarity=-0.071 Sum_probs=20.3
Q ss_pred EEEEcCCChhhcchhHHHHHHHhhC--CCcEEEEEECCCc
Q 029545 106 FYFTAAWCGPCKFIWPVIGELSAKH--PHVTTYKIDIDQK 143 (191)
Q Consensus 106 V~F~a~wC~~C~~~~p~~~~la~~~--~~v~~~~vd~d~~ 143 (191)
|.+|.+.+....+++..=+++..-+ .++.|-.||+..+
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~ 42 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMD 42 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCC
Confidence 4444455555666666555554433 3599999999875
No 339
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=23.82 E-value=2e+02 Score=18.22 Aligned_cols=68 Identities=13% Similarity=0.120 Sum_probs=35.5
Q ss_pred cCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcc--hHHHHHhcCCCcccEEEEEeCCeEEEEEeCCCHHHHHHHHHHH
Q 029545 110 AAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKG--LESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTMEQL 187 (191)
Q Consensus 110 a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~--~~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~~~~~l~~~i~~~ 187 (191)
-+||+.|.+..-.+.+..-. .....++....+ ...+ +.-....+|++.. .+|..+. +...+.+.|++.
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i~---~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~-~~~~~l~-----eS~aI~~yL~~~ 82 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGLE---YKTVPVEFPDIPPILGEL-TSGGFYTVPVIVD-GSGEVIG-----DSFAIAEYLEEA 82 (84)
T ss_pred CCcCChhHHHHHHHHhCCCC---CeEEEecCCCcccccccc-cCCCCceeCeEEE-CCCCEEe-----CHHHHHHHHHHh
Confidence 36899998877777654322 344445543321 0111 1123457898853 2254332 555666666653
No 340
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=23.75 E-value=1.7e+02 Score=22.58 Aligned_cols=29 Identities=31% Similarity=0.535 Sum_probs=22.8
Q ss_pred EEEEEeCCeEEEEEeCC-CHHHHHHHHHHHhc
Q 029545 159 TFLFFQHGEKVAEIVGA-DVSRLKTTMEQLYK 189 (191)
Q Consensus 159 t~~~~~~G~~~~~~~G~-~~~~l~~~i~~~~~ 189 (191)
++++|+.||.+- .|+ +.+++...++++.+
T Consensus 55 a~LIF~SGK~Vc--TGaKs~ed~~~av~~~~~ 84 (185)
T COG2101 55 AALIFRSGKVVC--TGAKSVEDVHRAVKKLAK 84 (185)
T ss_pred eEEEEecCcEEE--eccCcHHHHHHHHHHHHH
Confidence 677889999774 588 88888888877754
No 341
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=23.72 E-value=1.6e+02 Score=22.22 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=25.5
Q ss_pred CCeEEecCHHHHHHHHhhhhcCCCcEEEEEEcC
Q 029545 79 SNILVIESGEEFNSSLGKVKDDSLPAIFYFTAA 111 (191)
Q Consensus 79 ~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~ 111 (191)
.....+.+.+++++.+..+.+.++|++|++..+
T Consensus 142 ~~~~~v~~~~el~~al~~a~~~~~p~liev~~~ 174 (186)
T cd02015 142 IKGLRVEKPEELEAALKEALASDGPVLLDVLVD 174 (186)
T ss_pred CceEEeCCHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 445677788888888888777788888888765
No 342
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=23.70 E-value=1.6e+02 Score=22.38 Aligned_cols=28 Identities=32% Similarity=0.532 Sum_probs=22.1
Q ss_pred EEEEEeCCeEEEEEeCC-CHHHHHHHHHHHh
Q 029545 159 TFLFFQHGEKVAEIVGA-DVSRLKTTMEQLY 188 (191)
Q Consensus 159 t~~~~~~G~~~~~~~G~-~~~~l~~~i~~~~ 188 (191)
|+++|..|+.+- .|. +.+++...++++.
T Consensus 140 ~~lIF~SGKvvi--tGaks~~~~~~a~~~i~ 168 (174)
T cd04518 140 VLLLFSSGKMVI--TGAKSEEDAKRAVEKLL 168 (174)
T ss_pred EEEEeCCCEEEE--EecCCHHHHHHHHHHHH
Confidence 677888998764 587 8888888887764
No 343
>PF06279 DUF1033: Protein of unknown function (DUF1033); InterPro: IPR010434 This family consists of several hypothetical bacterial proteins. Many of the sequences in this family are annotated as putative DNA binding proteins but the function of this family is unknown.
Probab=23.70 E-value=41 Score=24.13 Aligned_cols=51 Identities=16% Similarity=0.231 Sum_probs=33.6
Q ss_pred CCCCCCeEEecCHHHHHHHHhhhh-------------cCCCcEEEEEEcC----CChhhcchhHHHHH
Q 029545 75 PDGPSNILVIESGEEFNSSLGKVK-------------DDSLPAIFYFTAA----WCGPCKFIWPVIGE 125 (191)
Q Consensus 75 ~~~~~~~~~i~s~~~f~~~l~~~~-------------~~~k~vlV~F~a~----wC~~C~~~~p~~~~ 125 (191)
..+...++....-+++++++...+ .+++..+.-||.+ ||..|-.-...+--
T Consensus 18 edWeedIve~~~F~~~eeAl~~Y~~~~~~~~~~y~~~~s~~~~~~AFWn~~e~~wCEdCdddLQ~yhs 85 (120)
T PF06279_consen 18 EDWEEDIVEEKEFDNYEEALKYYKKLWQKLKEKYPNYKSKKNLMTAFWNECEQRWCEDCDDDLQQYHS 85 (120)
T ss_pred ccchHhhhhhhhcCCHHHHHHHHHHHHHHHHHhCchheeccccEEEeccccchhhhhcchHHHHHHhh
Confidence 456677777777777766654311 2466778889986 89999766555543
No 344
>PRK13669 hypothetical protein; Provisional
Probab=23.53 E-value=2.3e+02 Score=18.73 Aligned_cols=55 Identities=16% Similarity=0.119 Sum_probs=35.9
Q ss_pred HHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCeEEEEEeCCCHHHHHHHHHHHhcC
Q 029545 123 IGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTMEQLYKK 190 (191)
Q Consensus 123 ~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~~~~~l~~~i~~~~~~ 190 (191)
++.+ +++|++.+...+|... =..|. .-|.. +-||+.+ .|.++++|.+.|.+.++.
T Consensus 20 ~~~L-e~dP~~dVie~gCls~--CG~C~-----~~~FA--lVng~~V---~a~t~eeL~~kI~~~i~e 74 (78)
T PRK13669 20 FEKL-EKDPNLDVLEYGCLGY--CGICS-----EGLFA--LVNGEVV---EGETPEELVENIYAHLEE 74 (78)
T ss_pred HHHH-HhCCCceEEEcchhhh--CcCcc-----cCceE--EECCeEe---ecCCHHHHHHHHHHHHhh
Confidence 4445 6788998888777653 12221 23332 3388866 377999999999888764
No 345
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=23.36 E-value=1.4e+02 Score=21.65 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=24.7
Q ss_pred CCeEEecCH--HHHHHHHhhhhcCCCcEEEEE
Q 029545 79 SNILVIESG--EEFNSSLGKVKDDSLPAIFYF 108 (191)
Q Consensus 79 ~~~~~i~s~--~~f~~~l~~~~~~~k~vlV~F 108 (191)
.....+.+. +++++.++++.+.++|.||+.
T Consensus 122 ~~~~~v~~~~~~el~~al~~a~~~~gp~vIeV 153 (153)
T PF02775_consen 122 IKGARVTTPDPEELEEALREALESGGPAVIEV 153 (153)
T ss_dssp SEEEEESCHSHHHHHHHHHHHHHSSSEEEEEE
T ss_pred CcEEEEccCCHHHHHHHHHHHHhCCCcEEEEc
Confidence 335677777 999999999999999999874
No 346
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=23.31 E-value=3e+02 Score=19.97 Aligned_cols=31 Identities=16% Similarity=0.381 Sum_probs=21.9
Q ss_pred EEEEc--CCChhhcchhHHHHHHHhhCCCcEEEEEE
Q 029545 106 FYFTA--AWCGPCKFIWPVIGELSAKHPHVTTYKID 139 (191)
Q Consensus 106 V~F~a--~wC~~C~~~~p~~~~la~~~~~v~~~~vd 139 (191)
|..|+ +-|..|. +.++++.+.||++.+..++
T Consensus 99 i~l~te~~pC~SC~---~vi~qF~~~~pni~~~v~~ 131 (133)
T PF14424_consen 99 IDLFTELPPCESCS---NVIEQFKKDFPNIKVNVVY 131 (133)
T ss_pred EEEEecCCcChhHH---HHHHHHHHHCCCcEEEEec
Confidence 44444 5688886 5788888999997765543
No 347
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=23.16 E-value=1.6e+02 Score=21.31 Aligned_cols=31 Identities=16% Similarity=0.266 Sum_probs=24.7
Q ss_pred CCeEEecCHHHHHHHHhhhhcCCCcEEEEEE
Q 029545 79 SNILVIESGEEFNSSLGKVKDDSLPAIFYFT 109 (191)
Q Consensus 79 ~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~ 109 (191)
-+...+.+.+++++.++++.+.++|.+|+..
T Consensus 137 ~~~~~v~~~~~l~~a~~~a~~~~~p~~i~v~ 167 (168)
T cd00568 137 AKGVRVEDPEDLEAALAEALAAGGPALIEVK 167 (168)
T ss_pred CeEEEECCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 3466778889999999888888889988764
No 348
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=23.13 E-value=1.7e+02 Score=21.69 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=24.6
Q ss_pred CCeEEecCHHHHHHHHhhhhcCCCcEEEEEE
Q 029545 79 SNILVIESGEEFNSSLGKVKDDSLPAIFYFT 109 (191)
Q Consensus 79 ~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~ 109 (191)
-+...+.+.+++++.+.++.+.++|.+|++.
T Consensus 140 ~~~~~v~~~~el~~al~~a~~~~~p~liev~ 170 (172)
T cd02004 140 GKGELVTTPEELKPALKRALASGKPALINVI 170 (172)
T ss_pred CeEEEECCHHHHHHHHHHHHHcCCCEEEEEE
Confidence 4466777888998888888777888888875
No 349
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=22.80 E-value=2.3e+02 Score=18.60 Aligned_cols=58 Identities=17% Similarity=0.180 Sum_probs=37.0
Q ss_pred hHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCeEEEEEeCCCHHHHHHHHHHHhcC
Q 029545 120 WPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTMEQLYKK 190 (191)
Q Consensus 120 ~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~~~~~~~G~~~~~l~~~i~~~~~~ 190 (191)
...++++. +.+++.+...+|-.. =..| ...|..+ -||+.+ .|.++++|.+.|.+.+++
T Consensus 17 ~~~~~~Le-~~p~~~Vie~gCl~~--Cg~C-----~~~pFAl--VnG~~V---~A~t~eeL~~kI~~~i~e 74 (78)
T PF07293_consen 17 DQVYEKLE-KDPDIDVIEYGCLSY--CGPC-----AKKPFAL--VNGEIV---AAETAEELLEKIKEKIEE 74 (78)
T ss_pred HHHHHHHh-cCCCccEEEcChhhh--CcCC-----CCCccEE--ECCEEE---ecCCHHHHHHHHHHHHhc
Confidence 34566665 468888887776653 1112 1234333 378766 477999999999888764
No 350
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=22.78 E-value=2.3e+02 Score=20.29 Aligned_cols=11 Identities=9% Similarity=0.338 Sum_probs=6.2
Q ss_pred HHHHHHHHhhh
Q 029545 87 GEEFNSSLGKV 97 (191)
Q Consensus 87 ~~~f~~~l~~~ 97 (191)
.++++++++.+
T Consensus 66 ~~nl~~ii~~~ 76 (150)
T cd01840 66 KDQLDELLDAL 76 (150)
T ss_pred HHHHHHHHHHc
Confidence 45566665554
No 351
>PRK06163 hypothetical protein; Provisional
Probab=22.74 E-value=1.7e+02 Score=22.81 Aligned_cols=36 Identities=6% Similarity=-0.053 Sum_probs=27.3
Q ss_pred eEEecCHHHHHHHHhhhhcCCCcEEEEEEcCCChhh
Q 029545 81 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPC 116 (191)
Q Consensus 81 ~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C 116 (191)
...+.+.++++..+.++.+.+++.||++..+.-+.|
T Consensus 143 ~~~v~~~~el~~al~~a~~~~~p~lIeV~i~~~~~~ 178 (202)
T PRK06163 143 SHWAADEAHFEALVDQALSGPGPSFIAVRIDDKPGV 178 (202)
T ss_pred EEEeCCHHHHHHHHHHHHhCCCCEEEEEEecCCCCC
Confidence 346788889988888887788898888876653444
No 352
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=22.22 E-value=2e+02 Score=17.62 Aligned_cols=69 Identities=12% Similarity=0.111 Sum_probs=37.8
Q ss_pred EEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCC-CcccEEEEEeCCeEEEEEeCCCHHHHHHHHH
Q 029545 107 YFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNI-SAVPTFLFFQHGEKVAEIVGADVSRLKTTME 185 (191)
Q Consensus 107 ~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I-~~~Pt~~~~~~G~~~~~~~G~~~~~l~~~i~ 185 (191)
.++.+.|+.|.+..-.+++..-. +....++.... ..+..+.... ..+|++.. +|..+. +...+.+.|+
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~gl~---~~~~~~~~~~~-~~~~~~~~p~~~~vP~l~~--~~~~l~-----eS~aI~~yL~ 71 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKGVP---YEYVEEDLGNK-SELLLASNPVHKKIPVLLH--NGKPIC-----ESLIIVEYID 71 (74)
T ss_pred EEECCCCchHHHHHHHHHHcCCC---CEEEEeCcccC-CHHHHHhCCCCCCCCEEEE--CCEEee-----hHHHHHHHHH
Confidence 45677899998887777655322 34444444322 1333333332 58998863 554322 4455555555
Q ss_pred H
Q 029545 186 Q 186 (191)
Q Consensus 186 ~ 186 (191)
+
T Consensus 72 ~ 72 (74)
T cd03058 72 E 72 (74)
T ss_pred h
Confidence 4
No 353
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=21.81 E-value=1.5e+02 Score=22.29 Aligned_cols=32 Identities=13% Similarity=0.075 Sum_probs=25.3
Q ss_pred CCeEEecCHHHHHHHHhhhhcCCCcEEEEEEc
Q 029545 79 SNILVIESGEEFNSSLGKVKDDSLPAIFYFTA 110 (191)
Q Consensus 79 ~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~a 110 (191)
.....+.+.+++++.+.++.+.++|.+|+...
T Consensus 138 ~~~~~v~~~~el~~al~~a~~~~~p~liev~~ 169 (177)
T cd02010 138 AKGYRIESADDLLPVLERALAADGVHVIDCPV 169 (177)
T ss_pred CEEEEECCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 34567888899988888888888888888664
No 354
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=21.67 E-value=1.9e+02 Score=22.00 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=22.1
Q ss_pred cEEEEEeCCeEEEEEeCC-CHHHHHHHHHHHh
Q 029545 158 PTFLFFQHGEKVAEIVGA-DVSRLKTTMEQLY 188 (191)
Q Consensus 158 Pt~~~~~~G~~~~~~~G~-~~~~l~~~i~~~~ 188 (191)
.|+.+|.+|+.+- .|+ +.+++...++++.
T Consensus 48 ~t~lIf~sGKivi--tGaks~~~~~~a~~~~~ 77 (174)
T cd00652 48 TTALIFSSGKMVI--TGAKSEEDAKLAARKYA 77 (174)
T ss_pred EEEEEECCCEEEE--EecCCHHHHHHHHHHHH
Confidence 4788899999765 587 8888877776664
No 355
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=21.65 E-value=5.4e+02 Score=22.41 Aligned_cols=100 Identities=12% Similarity=0.086 Sum_probs=57.0
Q ss_pred CHHHHHHHHhhhhc----CCCcE----EEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCc---chHHHHHhcCC
Q 029545 86 SGEEFNSSLGKVKD----DSLPA----IFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQK---GLESTLSKLNI 154 (191)
Q Consensus 86 s~~~f~~~l~~~~~----~~k~v----lV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~---~~~~l~~~~~I 154 (191)
+.++|++++..+++ ...+- =+.|+.+=|..-+.-.....+++.+--++.++.-.-... ...++|++.
T Consensus 236 ~~~~~~~iv~~l~~~~~~~~~~~~~~~~~~v~nTIC~AT~~RQ~A~~~La~~~vD~miVVGG~nSSNT~rL~eia~~~-- 313 (387)
T PRK13371 236 LKSETEEIGKLFERTMLRKYGPANLNEHFLSFNTICDATQERQDAMFSLVEEPLDLMVVIGGYNSSNTTHLQEIAIER-- 313 (387)
T ss_pred cHHHHHHHHHHHHHhhhhhcCCccccccccccCCcchhHHHHHHHHHHHhhcCCCEEEEECCCCCccHHHHHHHHHhc--
Confidence 45677777665533 21111 233678889998888888888876433543333333332 233566665
Q ss_pred CcccEEE---------------------------EEeCC-eEEEEEeCC-CHHHHHHHHHHHh
Q 029545 155 SAVPTFL---------------------------FFQHG-EKVAEIVGA-DVSRLKTTMEQLY 188 (191)
Q Consensus 155 ~~~Pt~~---------------------------~~~~G-~~~~~~~G~-~~~~l~~~i~~~~ 188 (191)
+.||+. +|++| +.+.-..|+ +++.+.+.+.+.+
T Consensus 314 -g~~ty~Ie~~~eL~~~~~i~h~~~~~~~~~t~~wl~~~~~~VGITAGASTP~~lI~eVi~~l 375 (387)
T PRK13371 314 -GIPSYHIDSPERILSGNSIEHKPLGKELVVTENWLPEGPVTVGITSGASTPDKVVEDVIEKI 375 (387)
T ss_pred -CCCEEEECCHHHcCCccccccccccchhhhhhhhhccCCCEEEEecCCCCCHHHHHHHHHHH
Confidence 456666 44433 356666677 6776655554443
No 356
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=21.53 E-value=1.8e+02 Score=21.72 Aligned_cols=31 Identities=13% Similarity=0.130 Sum_probs=24.6
Q ss_pred CCeEEecCHHHHHHHHhhhhcCCCcEEEEEE
Q 029545 79 SNILVIESGEEFNSSLGKVKDDSLPAIFYFT 109 (191)
Q Consensus 79 ~~~~~i~s~~~f~~~l~~~~~~~k~vlV~F~ 109 (191)
.....+.+.+++++.+.++.+.++|.+|+..
T Consensus 143 ~~~~~v~~~~el~~al~~a~~~~~p~lIev~ 173 (175)
T cd02009 143 LEYRRVSSLDELEQALESALAQDGPHVIEVK 173 (175)
T ss_pred CCeeeCCCHHHHHHHHHHHHhCCCCEEEEEe
Confidence 3456778889999988888888889888764
No 357
>PRK00394 transcription factor; Reviewed
Probab=21.31 E-value=2e+02 Score=22.06 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=22.2
Q ss_pred cEEEEEeCCeEEEEEeCC-CHHHHHHHHHHHh
Q 029545 158 PTFLFFQHGEKVAEIVGA-DVSRLKTTMEQLY 188 (191)
Q Consensus 158 Pt~~~~~~G~~~~~~~G~-~~~~l~~~i~~~~ 188 (191)
-|+.+|..|+.+- .|. +.+++.+.+++++
T Consensus 140 ~~~lIF~SGKvvi--tGaks~~~~~~a~~~i~ 169 (179)
T PRK00394 140 VVVLLFGSGKLVI--TGAKSEEDAEKAVEKIL 169 (179)
T ss_pred EEEEEEcCCEEEE--EecCCHHHHHHHHHHHH
Confidence 3677888998764 588 8888888877764
No 358
>COG1744 Med Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]
Probab=21.09 E-value=2.3e+02 Score=24.05 Aligned_cols=48 Identities=23% Similarity=0.320 Sum_probs=35.9
Q ss_pred CHHHHHHHHhhhhcCCCcEEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEEC
Q 029545 86 SGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDI 140 (191)
Q Consensus 86 s~~~f~~~l~~~~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~ 140 (191)
+.+++++.+....+++.-+++ ++--.+...+++++.++|++.|+.+|-
T Consensus 82 ~~~~~~~~~~~~a~~g~~lI~-------~~gf~~~d~~~~va~~~Pd~~F~iid~ 129 (345)
T COG1744 82 SEADYERALRALAEDGYDLIF-------GTGFAFSDALEKVAAEYPDVKFVIIDG 129 (345)
T ss_pred chhHHHHHHHHHHhcCCCEEE-------EeccchhhHHHHHHHHCCCCEEEEecC
Confidence 468888888766666653333 234466788999999999999999996
No 359
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=20.97 E-value=4.6e+02 Score=21.33 Aligned_cols=60 Identities=13% Similarity=0.230 Sum_probs=40.5
Q ss_pred EEEEEEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCC-cchHHHHHhcCCCcccEEEEEeC
Q 029545 104 AIFYFTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQ-KGLESTLSKLNISAVPTFLFFQH 165 (191)
Q Consensus 104 vlV~F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~-~~~~~l~~~~~I~~~Pt~~~~~~ 165 (191)
-++...+..||-..-.+..+.+++.+ ++.++.|+-+. ...+++...+.-.....++|+++
T Consensus 54 nvLL~G~rGtGKSSlVkall~~y~~~--GLRlIev~k~~L~~l~~l~~~l~~~~~kFIlf~DD 114 (249)
T PF05673_consen 54 NVLLWGARGTGKSSLVKALLNEYADQ--GLRLIEVSKEDLGDLPELLDLLRDRPYKFILFCDD 114 (249)
T ss_pred ceEEecCCCCCHHHHHHHHHHHHhhc--CceEEEECHHHhccHHHHHHHHhcCCCCEEEEecC
Confidence 35668889999987777777777655 47776666443 23567777666555666776665
No 360
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=20.92 E-value=2.1e+02 Score=17.39 Aligned_cols=57 Identities=12% Similarity=0.124 Sum_probs=28.5
Q ss_pred EEcCCChhhcchhHHHHHHHhhCCCcEEEEEECCCcchHHHHHhcCCCcccEEEEEeCCeEE
Q 029545 108 FTAAWCGPCKFIWPVIGELSAKHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKV 169 (191)
Q Consensus 108 F~a~wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~~~~~~l~~~~~I~~~Pt~~~~~~G~~~ 169 (191)
++.+.|+.|....=.+++..-. +....++.......++.+...-..+|++.. +|..+
T Consensus 4 y~~~~~~~~~~v~~~l~~~gi~---~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~~l 60 (72)
T cd03039 4 TYFNIRGRGEPIRLLLADAGVE---YEDVRITYEEWPELDLKPTLPFGQLPVLEI--DGKKL 60 (72)
T ss_pred EEEcCcchHHHHHHHHHHCCCC---cEEEEeCHHHhhhhhhccCCcCCCCCEEEE--CCEEE
Confidence 4456788887666655544322 333334432221122333334457898863 55443
No 361
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=20.73 E-value=35 Score=25.17 Aligned_cols=13 Identities=23% Similarity=0.634 Sum_probs=11.4
Q ss_pred CChhhcchhHHHH
Q 029545 112 WCGPCKFIWPVIG 124 (191)
Q Consensus 112 wC~~C~~~~p~~~ 124 (191)
-|++|++..|.+.
T Consensus 8 ~CPhCRq~ipALt 20 (161)
T PF09654_consen 8 QCPHCRQTIPALT 20 (161)
T ss_pred cCchhhcccchhe
Confidence 5999999999874
No 362
>PRK00394 transcription factor; Reviewed
Probab=20.66 E-value=2e+02 Score=22.03 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=22.9
Q ss_pred cEEEEEeCCeEEEEEeCC-CHHHHHHHHHHHh
Q 029545 158 PTFLFFQHGEKVAEIVGA-DVSRLKTTMEQLY 188 (191)
Q Consensus 158 Pt~~~~~~G~~~~~~~G~-~~~~l~~~i~~~~ 188 (191)
.|+.+|..|+.+- .|+ +.+++...+++++
T Consensus 47 ~t~lIf~sGKiv~--tGa~S~~~a~~a~~~~~ 76 (179)
T PRK00394 47 IAALIFRSGKVVC--TGAKSVEDLHEAVKIII 76 (179)
T ss_pred eEEEEEcCCcEEE--EccCCHHHHHHHHHHHH
Confidence 5888999999764 587 8888888777764
No 363
>COG4752 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.65 E-value=1.1e+02 Score=23.04 Aligned_cols=22 Identities=18% Similarity=0.516 Sum_probs=17.1
Q ss_pred hhhhcCCCcEEEEEEcCCChhh
Q 029545 95 GKVKDDSLPAIFYFTAAWCGPC 116 (191)
Q Consensus 95 ~~~~~~~k~vlV~F~a~wC~~C 116 (191)
..+.+.+|||++.|.+-|--+-
T Consensus 127 ~~I~e~dkp~LilfGTGwGlpd 148 (190)
T COG4752 127 NEIQERDKPWLILFGTGWGLPD 148 (190)
T ss_pred HHHhhcCCcEEEEecCCCCCCH
Confidence 3355688999999999996553
No 364
>PF14421 LmjF365940-deam: A distinct subfamily of CDD/CDA-like deaminases
Probab=20.64 E-value=99 Score=23.94 Aligned_cols=28 Identities=25% Similarity=0.495 Sum_probs=19.3
Q ss_pred CChhhcchhHHHHHHHhhCCCcEEEEEECCC
Q 029545 112 WCGPCKFIWPVIGELSAKHPHVTTYKIDIDQ 142 (191)
Q Consensus 112 wC~~C~~~~p~~~~la~~~~~v~~~~vd~d~ 142 (191)
=|+.|+++... +++..+++.++..|-..
T Consensus 156 PCGaC~ewL~K---IAe~np~f~v~mFd~t~ 183 (193)
T PF14421_consen 156 PCGACKEWLRK---IAEANPDFRVYMFDDTR 183 (193)
T ss_pred cchHHHHHHHH---HHHhCCCeEEEEecCCC
Confidence 48999766554 45567788888776543
No 365
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=20.59 E-value=36 Score=25.14 Aligned_cols=13 Identities=23% Similarity=0.606 Sum_probs=11.4
Q ss_pred CChhhcchhHHHH
Q 029545 112 WCGPCKFIWPVIG 124 (191)
Q Consensus 112 wC~~C~~~~p~~~ 124 (191)
-|++|++..|.+.
T Consensus 11 ~CPhCRQ~ipALt 23 (163)
T TIGR02652 11 RCPHCRQNIPALT 23 (163)
T ss_pred cCchhhcccchhe
Confidence 6999999999874
No 366
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=20.37 E-value=2.2e+02 Score=21.67 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=21.8
Q ss_pred cEEEEEeCCeEEEEEeCC-CHHHHHHHHHHHh
Q 029545 158 PTFLFFQHGEKVAEIVGA-DVSRLKTTMEQLY 188 (191)
Q Consensus 158 Pt~~~~~~G~~~~~~~G~-~~~~l~~~i~~~~ 188 (191)
.|+.+|.+|+.+- .|. +.++++..++++.
T Consensus 48 ~t~lIF~sGKivi--TGaks~~~~~~a~~~~~ 77 (174)
T cd04517 48 ATASVWSSGKITI--TGATSEEEAKQAARRAA 77 (174)
T ss_pred EEEEEECCCeEEE--EccCCHHHHHHHHHHHH
Confidence 3778889999764 587 8888887776654
No 367
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=20.34 E-value=2.1e+02 Score=21.77 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=20.7
Q ss_pred EEEEEeCCeEEEEEeCC-CHHHHHHHHHHHh
Q 029545 159 TFLFFQHGEKVAEIVGA-DVSRLKTTMEQLY 188 (191)
Q Consensus 159 t~~~~~~G~~~~~~~G~-~~~~l~~~i~~~~ 188 (191)
|+.+|..||.+- .|+ +.+++...++++.
T Consensus 49 t~lIF~SGKivi--TGaks~e~a~~a~~~i~ 77 (174)
T cd04516 49 TALIFSSGKMVC--TGAKSEDDSKLAARKYA 77 (174)
T ss_pred EEEEECCCeEEE--EecCCHHHHHHHHHHHH
Confidence 678889999764 587 8887776666654
No 368
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=20.12 E-value=21 Score=20.08 Aligned_cols=11 Identities=18% Similarity=0.202 Sum_probs=8.7
Q ss_pred CHHHHHHHHHH
Q 029545 176 DVSRLKTTMEQ 186 (191)
Q Consensus 176 ~~~~l~~~i~~ 186 (191)
+.++|.+|+++
T Consensus 39 ~~~~l~~~~~~ 49 (49)
T TIGR01764 39 PREDVDEYLEQ 49 (49)
T ss_pred eHHHHHHHHhC
Confidence 78888888763
Done!