BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029546
(191 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QHS|A Chain A, Structural Basis Of Octanoic Acid Recognition By
Lipoate-protein Ligase B
Length = 237
Score = 123 bits (308), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 92/156 (58%), Gaps = 16/156 (10%)
Query: 19 FQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRV 78
F++Y ERGG+VTYHGPGQLV YPI + ++ +LR +EE +RV + + I A
Sbjct: 88 FELYWVERGGDVTYHGPGQLVGYPIFPVGR---EVRRFLRQIEEAIVRVAAGYGISAYPT 144
Query: 79 EGLTGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLL 138
G GVWVG+ KL AIG+ V + +++HG ALNV TDL F IVPCG++ + V S++ LL
Sbjct: 145 PGYAGVWVGEDKLCAIGVAVKEGVSFHGFALNVNTDLNDFTVIVPCGLKGKGVTSLEKLL 204
Query: 139 GESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQL 174
G + + A ++ F+EVF L
Sbjct: 205 GRKVPM-------------EEAKARVVAAFAEVFGL 227
>pdb|2QHT|A Chain A, Structural Basis Of Octanoic Acid Recognition By
Lipoate-Protein Ligase B
pdb|2QHU|A Chain A, Structural Basis Of Octanoic Acid Recognition By
Lipoate-Protein Ligase B
pdb|2QHV|A Chain A, Structural Basis Of Octanoic Acid Recognition By
Lipoate-protein Ligase B
Length = 210
Score = 123 bits (308), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 92/156 (58%), Gaps = 16/156 (10%)
Query: 19 FQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRV 78
F++Y ERGG+VTYHGPGQLV YPI + ++ +LR +EE +RV + + I A
Sbjct: 68 FELYWVERGGDVTYHGPGQLVGYPIFPVGR---EVRRFLRQIEEAIVRVAAGYGISAYPT 124
Query: 79 EGLTGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLL 138
G GVWVG+ KL AIG+ V + +++HG ALNV TDL F IVPCG++ + V S++ LL
Sbjct: 125 PGYAGVWVGEDKLCAIGVAVKEGVSFHGFALNVNTDLNDFTVIVPCGLKGKGVTSLEKLL 184
Query: 139 GESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQL 174
G + + A ++ F+EVF L
Sbjct: 185 GRKVPM-------------EEAKARVVAAFAEVFGL 207
>pdb|1W66|A Chain A, Structure Of A Lipoate-protein Ligase B From Mycobacterium
Tuberculosis
Length = 232
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 81/127 (63%), Gaps = 4/127 (3%)
Query: 21 VYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEG 80
V T+RGG++T+HGPGQLV YPII L +D+ Y+R LEE I+V + + A RV+G
Sbjct: 73 VVDTDRGGKITWHGPGQLVGYPIIGL-AEPLDVVNYVRRLEESLIQVCADLGLHAGRVDG 131
Query: 81 LTGVWVGDQ---KLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGL 137
+GVW+ + K+AAIG+RVS+ HG ALN DL F IVPCGI + V S+
Sbjct: 132 RSGVWLPGRPARKVAAIGVRVSRATTLHGFALNCDCDLAAFTAIVPCGISDAAVTSLSAE 191
Query: 138 LGESQSL 144
LG + ++
Sbjct: 192 LGRTVTV 198
>pdb|2IJD|1 Chain 1, Crystal Structure Of The Poliovirus Precursor Protein 3cd
pdb|2IJD|2 Chain 2, Crystal Structure Of The Poliovirus Precursor Protein 3cd
Length = 644
Score = 29.6 bits (65), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 22 YRTERGGEVTYHGPGQLVMYPIINLRNH-KMD---LHWYLRALEEVAIRVLSTFSIKASR 77
Y T+ GE+ + P + V YPIIN + K++ H+ ++E A+ + +K
Sbjct: 178 YFTQSQGEIQWMRPSKEVGYPIINAPSKTKLEPSAFHYVFEGVKEPAVLTKNDPRLKTDF 237
Query: 78 VEGLTGVWVGDQ 89
E + +VG++
Sbjct: 238 EEAIFSKYVGNK 249
>pdb|3NPG|A Chain A, Crystal Structure Of A Protein With Unknown Function From
Duf364 Family (Ph1506) From Pyrococcus Horikoshii At
2.70 A Resolution
pdb|3NPG|B Chain B, Crystal Structure Of A Protein With Unknown Function From
Duf364 Family (Ph1506) From Pyrococcus Horikoshii At
2.70 A Resolution
pdb|3NPG|C Chain C, Crystal Structure Of A Protein With Unknown Function From
Duf364 Family (Ph1506) From Pyrococcus Horikoshii At
2.70 A Resolution
pdb|3NPG|D Chain D, Crystal Structure Of A Protein With Unknown Function From
Duf364 Family (Ph1506) From Pyrococcus Horikoshii At
2.70 A Resolution
Length = 249
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 117 PFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHN 162
P+ W++ GI+ R +G L E Q T P + ID A +
Sbjct: 31 PYTWVLVEGIEGRALGVAXTLPEEVQRYTNSIEEPSLLEFIDKADS 76
>pdb|1VDY|A Chain A, Nmr Structure Of The Hypothetical Enth-Vhs Domain
At3g16270 From Arabidopsis Thaliana
pdb|2DCP|A Chain A, Fully Automated Nmr Structure Determination Of The
Enth-Vhs Domain At3g16270 From Arabidopsis Thaliana
Length = 140
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 134 IKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLEIHNKA 180
I + + + ++ + C L+ +H S++KEFSE + NK+
Sbjct: 16 IDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKS 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,083,942
Number of Sequences: 62578
Number of extensions: 235963
Number of successful extensions: 615
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 606
Number of HSP's gapped (non-prelim): 6
length of query: 191
length of database: 14,973,337
effective HSP length: 93
effective length of query: 98
effective length of database: 9,153,583
effective search space: 897051134
effective search space used: 897051134
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)