Query 029546
Match_columns 191
No_of_seqs 151 out of 1056
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 14:39:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029546.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029546hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00214 lipB lipoate-protein 100.0 1.1E-60 2.3E-65 395.2 17.6 159 1-173 26-184 (184)
2 PRK14344 lipoate-protein ligas 100.0 2E-60 4.3E-65 403.3 18.2 160 1-174 64-223 (223)
3 PRK14342 lipoate-protein ligas 100.0 2.1E-60 4.5E-65 401.2 17.1 161 1-178 49-209 (213)
4 COG0321 LipB Lipoate-protein l 100.0 4.2E-60 9.1E-65 398.2 16.8 160 1-177 55-215 (221)
5 PRK14348 lipoate-protein ligas 100.0 5.5E-60 1.2E-64 400.5 17.0 161 1-174 52-220 (221)
6 PRK14345 lipoate-protein ligas 100.0 1.5E-59 3.2E-64 400.9 18.1 162 1-180 56-223 (234)
7 PRK14343 lipoate-protein ligas 100.0 3.4E-59 7.3E-64 398.3 18.1 162 1-178 58-224 (235)
8 PRK14341 lipoate-protein ligas 100.0 2.7E-59 5.9E-64 394.4 17.3 156 1-173 49-212 (213)
9 PRK14349 lipoate-protein ligas 100.0 3.6E-59 7.9E-64 394.6 17.6 166 1-183 44-215 (220)
10 PRK14347 lipoate-protein ligas 100.0 1.9E-58 4E-63 388.1 17.9 156 1-173 47-209 (209)
11 PRK14346 lipoate-protein ligas 100.0 1.6E-57 3.4E-62 386.8 17.5 156 1-173 46-229 (230)
12 KOG0325 Lipoyltransferase [Ene 100.0 1.1E-45 2.4E-50 310.0 13.0 148 14-178 71-218 (226)
13 PRK08330 biotin--protein ligas 99.6 5.7E-15 1.2E-19 125.5 13.8 128 25-174 41-168 (236)
14 PF03099 BPL_LplA_LipB: Biotin 99.5 8.2E-13 1.8E-17 99.9 11.6 100 14-114 17-125 (125)
15 PRK03822 lplA lipoate-protein 99.3 8.5E-12 1.8E-16 112.0 11.8 163 1-185 46-225 (338)
16 COG0095 LplA Lipoate-protein l 99.3 9.9E-12 2.2E-16 106.8 11.4 164 15-187 62-229 (248)
17 TIGR00545 lipoyltrans lipoyltr 99.3 1.6E-11 3.4E-16 109.6 12.5 142 15-176 61-213 (324)
18 PRK14061 unknown domain/lipoat 99.2 1.4E-10 3.1E-15 110.1 12.3 163 1-185 270-449 (562)
19 PRK05935 biotin--protein ligas 98.7 5.5E-07 1.2E-11 75.1 14.1 131 25-175 43-178 (190)
20 COG0340 BirA Biotin-(acetyl-Co 98.5 9.3E-07 2E-11 76.1 11.3 129 25-174 35-169 (238)
21 TIGR00121 birA_ligase birA, bi 98.5 2.8E-06 6E-11 72.3 12.5 128 25-173 39-171 (237)
22 PTZ00275 biotin-acetyl-CoA-car 98.4 8.3E-06 1.8E-10 71.7 13.3 132 28-173 72-215 (285)
23 PTZ00276 biotin/lipoate protei 98.2 3.5E-05 7.5E-10 66.3 13.1 90 25-115 46-138 (245)
24 PRK11886 bifunctional biotin-- 98.2 3.6E-05 7.7E-10 68.0 12.3 126 25-173 116-250 (319)
25 PRK08477 biotin--protein ligas 98.0 0.00018 3.9E-09 61.0 12.5 89 25-114 41-131 (211)
26 PRK06955 biotin--protein ligas 97.7 0.00084 1.8E-08 59.3 12.8 87 25-114 78-176 (300)
27 PRK13325 bifunctional biotin-- 97.7 0.00074 1.6E-08 65.1 12.8 88 25-113 123-215 (592)
28 KOG3159 Lipoate-protein ligase 96.2 0.016 3.6E-07 52.0 7.3 143 15-175 69-223 (336)
29 KOG0325 Lipoyltransferase [Ene 95.8 0.0028 6E-08 54.3 0.2 40 9-49 134-173 (226)
30 PF04017 DUF366: Domain of unk 93.3 1.2 2.7E-05 37.2 10.2 61 55-117 80-142 (183)
31 KOG1536 Biotin holocarboxylase 90.8 3.5 7.5E-05 40.2 11.2 132 24-174 425-569 (649)
32 COG2029 Uncharacterized conser 90.7 3.6 7.8E-05 34.3 9.8 87 60-171 90-178 (189)
33 PF13823 ADH_N_assoc: Alcohol 65.9 4.1 8.8E-05 23.1 1.3 11 30-40 4-14 (23)
34 PRK05761 DNA polymerase I; Rev 39.6 65 0.0014 32.6 5.7 43 34-76 721-773 (787)
35 cd04863 MtLigD_Pol_like MtLigD 26.8 2.2E+02 0.0047 24.8 6.2 57 28-85 82-149 (231)
36 cd05531 POLBc_B2 DNA polymeras 25.4 1.5E+02 0.0032 27.0 5.1 37 34-70 307-351 (352)
37 KOG0109 RNA-binding protein LA 23.8 71 0.0015 29.1 2.7 53 63-115 18-72 (346)
38 COG3052 CitD Citrate lyase, ga 23.0 98 0.0021 23.4 2.9 23 54-76 39-61 (98)
39 cd05537 POLBc_Pol_II DNA polym 22.4 1.8E+02 0.0039 26.6 5.1 49 24-72 315-371 (371)
40 TIGR01608 citD citrate lyase a 22.3 1.1E+02 0.0024 23.0 3.1 24 53-76 38-61 (92)
41 TIGR02778 ligD_pol DNA polymer 20.2 2.9E+02 0.0063 24.2 5.7 57 28-85 97-161 (245)
No 1
>TIGR00214 lipB lipoate-protein ligase B. Involved in lipoate biosynthesis as the main determinant of the lipoyl-protein ligase activity required for lipoylation of enzymes such as alpha-ketoacid dehydrogenases. Involved in activation and re-activation (following denaturation) of lipoyl-protein ligases (calcium ion-dependant process).
Probab=100.00 E-value=1.1e-60 Score=395.19 Aligned_cols=159 Identities=42% Similarity=0.793 Sum_probs=148.0
Q ss_pred CCCCCCcccccCCCCCCCCeEEEcCcCCceeEeCCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcCCcceecCC
Q 029546 1 MGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEG 80 (191)
Q Consensus 1 lGr~~~~~~l~~~~~~~gi~v~~~~RGG~iTyHgPGQLV~YpIl~L~~~~~~v~~yv~~Le~~vi~~L~~~gi~a~~~~~ 80 (191)
+||+++++|++.+....+++|++|+|||++|||||||||+|||+||+++++++++|++.||+++|++|++|||+++++++
T Consensus 26 ~G~~~~~~~l~~~~~~~~~~v~~~~RGG~iTyHGPGQLV~YpIl~L~~~~~~v~~yv~~lE~~~I~~l~~~gi~a~~~~~ 105 (184)
T TIGR00214 26 QGQAGKTEHLLFDPDIPPAEVVQSERGGQVTYHGPGQQVMYVILDLKRFQLDVRWLVTQLEQTVIITLAELGIEGEPIAD 105 (184)
T ss_pred CCCCCChhhccCCcCCCcceEEEeCCCCeeEEECCCeEEEEEEEEchhcCCCHHHHHHHHHHHHHHHHHHcCCceEEcCC
Confidence 69999999999654334677999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEeCCCeEEEecceEeCcEEEEeeEEeecCCCCCCCceecCCCCCCceeeechhhcCccccccccCCCChhhhHHHH
Q 029546 81 LTGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIA 160 (191)
Q Consensus 81 ~~GVwv~~~KIasiGv~i~~~vt~HG~aLNV~~dL~~f~~I~PCGl~~~~vTSl~~~~~~~~~~~~~~~~~~~~~~~~~v 160 (191)
.+|||++++||||||++++||+|||||||||++||++|+.|+|||++|..||||+++... ++ +++|
T Consensus 106 ~~GVWv~~~KIasIGv~v~r~vt~HG~ALNv~~dL~~F~~I~PCGl~~~~vTSl~~~~~~----------~~----~~~v 171 (184)
T TIGR00214 106 ATGVWVEGKKVASLGIRVRRGCTFHGLALNINMDLSPFSHINPCGYAGREMGSLNQFLPG----------AT----VENV 171 (184)
T ss_pred CCeEEecCCEEEEEEEEEeccEeecceEEEcCCCchHhccEEcCCCCCCcEeeHHHHcCC----------CC----HHHH
Confidence 999999999999999999999999999999999999999999999999999999876532 23 7899
Q ss_pred HHHHHHHHHHhcc
Q 029546 161 HNSLIKEFSEVFQ 173 (191)
Q Consensus 161 ~~~l~~~F~~~F~ 173 (191)
.+.++++|++.|+
T Consensus 172 ~~~~~~~f~~~f~ 184 (184)
T TIGR00214 172 APLLIKAFAELLG 184 (184)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999985
No 2
>PRK14344 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=2e-60 Score=403.32 Aligned_cols=160 Identities=47% Similarity=0.872 Sum_probs=151.6
Q ss_pred CCCCCCcccccCCCCCCCCeEEEcCcCCceeEeCCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcCCcceecCC
Q 029546 1 MGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEG 80 (191)
Q Consensus 1 lGr~~~~~~l~~~~~~~gi~v~~~~RGG~iTyHgPGQLV~YpIl~L~~~~~~v~~yv~~Le~~vi~~L~~~gi~a~~~~~ 80 (191)
+||+++++|++++.++.+++|++|+|||++|||||||||+|||+||++.+.++++|++.||+++|++|++|||++++.++
T Consensus 64 ~G~~~~~~~l~~~~~~~~~~v~~~~RGG~iTyHGPGQLV~YpIl~L~~~~~~v~~yv~~lE~~ii~~l~~~gi~~~~~~~ 143 (223)
T PRK14344 64 LGRGASEDNLLFSLNNPPADVFRIDRGGEVTHHMPGQLVTYLVLDLRRFNKDLNWYLRQLEQVLIDVLADLGIDGERLDG 143 (223)
T ss_pred CCCCCChhhccCccccCCCcEEEcCCCceeeEECCCcEEEEEEEEccccCCCHHHHHHHHHHHHHHHHHHcCCceeecCC
Confidence 69999999999877677999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEeCCCeEEEecceEeCcEEEEeeEEeecCCCCCCCceecCCCCCCceeeechhhcCccccccccCCCChhhhHHHH
Q 029546 81 LTGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIA 160 (191)
Q Consensus 81 ~~GVwv~~~KIasiGv~i~~~vt~HG~aLNV~~dL~~f~~I~PCGl~~~~vTSl~~~~~~~~~~~~~~~~~~~~~~~~~v 160 (191)
.+|||++++||||||+++++|+|+|||||||++||++|+.|+|||++|..||||+++... ++ ++++
T Consensus 144 ~~GVWv~~~KIaaIGv~v~r~vT~HG~ALNv~~dL~~F~~IvPCGl~~~~vTSl~~~~~~----------~~----~~~v 209 (223)
T PRK14344 144 LTGVWIGNKKVASIGIGCRRWITQHGFSLNVDCDLEGFNKIVPCGLEGCQVGRLSDWIPG----------LN----IKEV 209 (223)
T ss_pred CCcEEcCCCeEEEEeEeEecceeecceEEecCCCccccCcEEcCCCCCCcEeeHHHHcCC----------CC----HHHH
Confidence 999999999999999999999999999999999999999999999999999999886543 23 7889
Q ss_pred HHHHHHHHHHhccc
Q 029546 161 HNSLIKEFSEVFQL 174 (191)
Q Consensus 161 ~~~l~~~F~~~F~~ 174 (191)
++.++++|++.|+.
T Consensus 210 ~~~l~~~f~~~f~~ 223 (223)
T PRK14344 210 KPLLKKSLQERFGL 223 (223)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999999963
No 3
>PRK14342 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=2.1e-60 Score=401.18 Aligned_cols=161 Identities=34% Similarity=0.618 Sum_probs=150.7
Q ss_pred CCCCCCcccccCCCCCCCCeEEEcCcCCceeEeCCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcCCcceecCC
Q 029546 1 MGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEG 80 (191)
Q Consensus 1 lGr~~~~~~l~~~~~~~gi~v~~~~RGG~iTyHgPGQLV~YpIl~L~~~~~~v~~yv~~Le~~vi~~L~~~gi~a~~~~~ 80 (191)
+||+++++|++. ..+++|++|+|||++|||||||||+|||+||++.+.++++|++.||+++|++|+.|||++.+.++
T Consensus 49 ~Gr~~~~~~ll~---~~~~~v~~~~RGG~iTyHGPGQLV~YpIl~L~~~~~~~~~yv~~lE~~vi~~l~~~gi~~~~~~~ 125 (213)
T PRK14342 49 QGQAGKPEHILN---PGDIPVVQSDRGGQVTYHGPGQLVMYVLLDLKRLKLGVRQLVTAIEQTVINTLAEYGIEAHAKPD 125 (213)
T ss_pred CCCCCChhhccC---CCCCcEEEecCCCceEEECCCeEEEEEEEEccccCCCHHHHHHHHHHHHHHHHHHcCCceeecCC
Confidence 699999999984 45899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEeCCCeEEEecceEeCcEEEEeeEEeecCCCCCCCceecCCCCCCceeeechhhcCccccccccCCCChhhhHHHH
Q 029546 81 LTGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIA 160 (191)
Q Consensus 81 ~~GVwv~~~KIasiGv~i~~~vt~HG~aLNV~~dL~~f~~I~PCGl~~~~vTSl~~~~~~~~~~~~~~~~~~~~~~~~~v 160 (191)
.+|||++++||||||+++++|+|+|||||||++||++|+.|+|||++|+.||||+++... ++ +++|
T Consensus 126 ~~GVWv~~~KIaaIGv~v~r~vT~HG~AlNv~~dL~~F~~IvPCGl~~~~vTSl~~~~~~----------~~----~~~v 191 (213)
T PRK14342 126 APGVYVDGKKIASLGLRIRRGCSFHGLALNVNMDLSPFLRINPCGYAGLEMTQLSDLGGP----------AT----VDEV 191 (213)
T ss_pred CCcCcccCCEEEEEEEeEecceeecceeEecCCCchhhCcEecCCCCCCcEeeHHHhCCC----------CC----HHHH
Confidence 999999999999999999999999999999999999999999999999999999886432 33 7899
Q ss_pred HHHHHHHHHHhccccccc
Q 029546 161 HNSLIKEFSEVFQLEIHN 178 (191)
Q Consensus 161 ~~~l~~~F~~~F~~~~~~ 178 (191)
++.++++|++.|+++..+
T Consensus 192 ~~~~~~~f~~~f~~~~~~ 209 (213)
T PRK14342 192 APRLLAELLALLGYNDQE 209 (213)
T ss_pred HHHHHHHHHHHhCCcchh
Confidence 999999999999876553
No 4
>COG0321 LipB Lipoate-protein ligase B [Coenzyme metabolism]
Probab=100.00 E-value=4.2e-60 Score=398.24 Aligned_cols=160 Identities=43% Similarity=0.763 Sum_probs=151.9
Q ss_pred CCCCCCcccccCCCCCCCCeEEEcCcCCceeEeCCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcCCcceecCC
Q 029546 1 MGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEG 80 (191)
Q Consensus 1 lGr~~~~~~l~~~~~~~gi~v~~~~RGG~iTyHgPGQLV~YpIl~L~~~~~~v~~yv~~Le~~vi~~L~~~gi~a~~~~~ 80 (191)
+|+.++.+||++ ..++||++++|||++|||||||+|+|||+||++++.++++||+.||+++|+||+.|||+++++++
T Consensus 55 ~G~~~~~e~l~~---~~~ipVv~~~RGGqvTyHGPGQ~V~Y~ildLkr~~~~vr~~V~~LEqavI~tLa~~~i~~~~~~~ 131 (221)
T COG0321 55 AGQAGKAEHLLM---PDDIPVVQTDRGGQVTYHGPGQLVAYPILDLKRPKLDVREYVRALEQAVINTLAEYGIEAERRPD 131 (221)
T ss_pred cCccCCHhhccc---CCCCCEEEecCCceeEEeCCCcEEEEEEEecccccccHHHHHHHHHHHHHHHHHHcCCcccccCC
Confidence 589999999987 55899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEeCC-CeEEEecceEeCcEEEEeeEEeecCCCCCCCceecCCCCCCceeeechhhcCccccccccCCCChhhhHHH
Q 029546 81 LTGVWVGD-QKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDI 159 (191)
Q Consensus 81 ~~GVwv~~-~KIasiGv~i~~~vt~HG~aLNV~~dL~~f~~I~PCGl~~~~vTSl~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (191)
.+||||++ +||||||+||+||+||||+||||++||++|++|+|||+.|..||||+++.... + +++
T Consensus 132 ~~GVwV~~~~KIAaiGirirr~vs~HGlALNv~~DL~~F~~I~PCG~~~~~~tsl~d~~~~v----------~----~~~ 197 (221)
T COG0321 132 RPGVWVEEERKIAAIGIRIRRGVTFHGLALNVNMDLSPFNRIVPCGYAGMEVTSLSDLGPPV----------T----VDE 197 (221)
T ss_pred CCeEEecCCceEEEEEEEEecccceeeeEEeccCCchhccceeccccCCCceeEHHHhCCCC----------c----HHH
Confidence 99999996 99999999999999999999999999999999999999999999999988752 2 789
Q ss_pred HHHHHHHHHHHhcccccc
Q 029546 160 AHNSLIKEFSEVFQLEIH 177 (191)
Q Consensus 160 v~~~l~~~F~~~F~~~~~ 177 (191)
|...++++|++.|+....
T Consensus 198 V~~~l~~~~~~~l~~~~~ 215 (221)
T COG0321 198 VAKALVAAFAKLLGPKLI 215 (221)
T ss_pred HHHHHHHHHHHHhCCccc
Confidence 999999999999998653
No 5
>PRK14348 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=5.5e-60 Score=400.50 Aligned_cols=161 Identities=42% Similarity=0.745 Sum_probs=151.1
Q ss_pred CCCCCCcccccCC---CCCCCCeEEEcCcCCceeEeCCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcCCccee
Q 029546 1 MGTGGSEEYLNFD---LKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASR 77 (191)
Q Consensus 1 lGr~~~~~~l~~~---~~~~gi~v~~~~RGG~iTyHgPGQLV~YpIl~L~~~~~~v~~yv~~Le~~vi~~L~~~gi~a~~ 77 (191)
+||+++++|++.+ ++..|++|++|+|||++|||||||||+|||+||++++.++++|++.||+++|++|++|||++++
T Consensus 52 ~G~~~~~~~ll~~~~~l~~~~~~v~~t~RGG~iTyHGPGQlV~Ypil~L~~~~~~v~~yv~~lE~~vI~~l~~~gi~~~~ 131 (221)
T PRK14348 52 LGRSGKENNMLLGEEQLKTIGATLYHIDRGGDITYHGPGQLVCYPILNLEEFGLGLKEYVHLLEEAVIRVCASYGVVAGR 131 (221)
T ss_pred CCcCCCchhccCChhhhcccCCcEEEeCCCCceEEECCCeEEEEEEEEccccCCCHHHHHHHHHHHHHHHHHHcCCceee
Confidence 6999999999975 4567999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeEeC-----CCeEEEecceEeCcEEEEeeEEeecCCCCCCCceecCCCCCCceeeechhhcCccccccccCCCC
Q 029546 78 VEGLTGVWVG-----DQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPD 152 (191)
Q Consensus 78 ~~~~~GVwv~-----~~KIasiGv~i~~~vt~HG~aLNV~~dL~~f~~I~PCGl~~~~vTSl~~~~~~~~~~~~~~~~~~ 152 (191)
.++.+||||+ ++||||||+++++|+|||||||||++||++|+.|+|||++|..||||+++++.. ++
T Consensus 132 ~~~~~GVWv~~~~~~~~KIaaIGv~v~r~vT~HG~ALNv~~dL~~F~~IvPCGl~~~~vTSl~~~~g~~---------~~ 202 (221)
T PRK14348 132 LEKATGVWLEGDTSRARKICAIGVRSSHYVTMHGLALNVNTDLRYFSYIHPCGFIDKGVTSLQQELGHS---------ID 202 (221)
T ss_pred cCCCCCEEecCCCCCCCcEEEEeEEeccceeecceEEEecCChHHhccCccCCCCCCcEEeeHHHhCCC---------CC
Confidence 9999999998 589999999999999999999999999999999999999999999999887753 23
Q ss_pred hhhhHHHHHHHHHHHHHHhccc
Q 029546 153 DCKLIDIAHNSLIKEFSEVFQL 174 (191)
Q Consensus 153 ~~~~~~~v~~~l~~~F~~~F~~ 174 (191)
+++|++.++++|++.|+-
T Consensus 203 ----~~~v~~~l~~~f~~~~~~ 220 (221)
T PRK14348 203 ----MAEVKERLGRELLAALLS 220 (221)
T ss_pred ----HHHHHHHHHHHHHHHHcc
Confidence 789999999999999863
No 6
>PRK14345 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=1.5e-59 Score=400.86 Aligned_cols=162 Identities=38% Similarity=0.639 Sum_probs=150.5
Q ss_pred CCCCCCcccccCCCCCCCCeEEEcCcCCceeEeCCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcCCcceecCC
Q 029546 1 MGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEG 80 (191)
Q Consensus 1 lGr~~~~~~l~~~~~~~gi~v~~~~RGG~iTyHgPGQLV~YpIl~L~~~~~~v~~yv~~Le~~vi~~L~~~gi~a~~~~~ 80 (191)
+||++++++++. .+++|++|+|||++|||||||||+|||+||++ +.++++|++.||+++|++|++|||+++++++
T Consensus 56 ~Gr~~~~~~l~~----~~i~v~~tdRGG~iTyHGPGQLV~YpIldL~~-~~~v~~yv~~LE~~vI~~l~~~gi~a~~~~~ 130 (234)
T PRK14345 56 AGKRTEPHERPT----DGTPVVDVDRGGKITWHGPGQLVGYPIIKLAE-PLDVVDYVRRLEEALIAVCADLGLNAGRVDG 130 (234)
T ss_pred CCCCCCcccccc----CCCcEEEecCCCceeEeCCCeEEEEEEEecCC-CCCHHHHHHHHHHHHHHHHHHcCCceeecCC
Confidence 699999998864 37999999999999999999999999999998 6899999999999999999999999999999
Q ss_pred CceeEeC------CCeEEEecceEeCcEEEEeeEEeecCCCCCCCceecCCCCCCceeeechhhcCccccccccCCCChh
Q 029546 81 LTGVWVG------DQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDC 154 (191)
Q Consensus 81 ~~GVwv~------~~KIasiGv~i~~~vt~HG~aLNV~~dL~~f~~I~PCGl~~~~vTSl~~~~~~~~~~~~~~~~~~~~ 154 (191)
.+||||+ ++||||||++++||+|||||||||++||++|+.|+|||++|..||||+++++.. ++
T Consensus 131 ~~GVWv~~~~~~~~~KIaaIGv~v~r~vT~HG~ALNV~~DL~~F~~IvPCGl~~~~vTSl~~~~g~~---------~~-- 199 (234)
T PRK14345 131 RSGVWVPADGGRPDRKIAAIGIRVSRGVTMHGFALNCDNDLAAFDAIVPCGISDAGVTTLSAELGRT---------VT-- 199 (234)
T ss_pred CCeEEECCCCCCCcceEEEEEeeeccceeecceEEEeCCChHHhceEEeCCCCCCcEEehhHhhCCC---------CC--
Confidence 9999997 799999999999999999999999999999999999999999999999887753 33
Q ss_pred hhHHHHHHHHHHHHHHhcccccccCC
Q 029546 155 KLIDIAHNSLIKEFSEVFQLEIHNKA 180 (191)
Q Consensus 155 ~~~~~v~~~l~~~F~~~F~~~~~~~~ 180 (191)
+++|++.++++|++.|+.++...+
T Consensus 200 --~~~v~~~l~~~f~~~f~~~~~~~~ 223 (234)
T PRK14345 200 --VAEVVDPVAAALCDALDGRLPVRD 223 (234)
T ss_pred --HHHHHHHHHHHHHHHhCcccccCC
Confidence 789999999999999999876543
No 7
>PRK14343 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=3.4e-59 Score=398.26 Aligned_cols=162 Identities=30% Similarity=0.589 Sum_probs=151.3
Q ss_pred CCCCCCcccccCCCCCCCCeEEEcCcCCceeEeCCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcCCcceecCC
Q 029546 1 MGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEG 80 (191)
Q Consensus 1 lGr~~~~~~l~~~~~~~gi~v~~~~RGG~iTyHgPGQLV~YpIl~L~~~~~~v~~yv~~Le~~vi~~L~~~gi~a~~~~~ 80 (191)
+||+++++|++.+ ..+++|++|+|||++|||||||||+|||+||+++++++++|++.||+++|++|+.|||+++++++
T Consensus 58 ~G~~~~~~~ll~~--~~~i~v~~tdRGG~iTyHGPGQLV~YpIl~L~~~~~~v~~yv~~lE~~vI~~l~~~gi~~~~~~~ 135 (235)
T PRK14343 58 LGQAGDPAHLLVA--DSGIPLVKVDRGGQITYHGPGQVVAYLLLDLRRRKLMVRELVTRIEQAVIDTLAAYNLASERKAG 135 (235)
T ss_pred CCCCCChhhccCC--cCCCCEEEeCCCCceeEeCCCeEEEEEEEEccccCCCHHHHHHHHHHHHHHHHHHcCCceeecCC
Confidence 6999999999864 45899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEeC-----CCeEEEecceEeCcEEEEeeEEeecCCCCCCCceecCCCCCCceeeechhhcCccccccccCCCChhh
Q 029546 81 LTGVWVG-----DQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCK 155 (191)
Q Consensus 81 ~~GVwv~-----~~KIasiGv~i~~~vt~HG~aLNV~~dL~~f~~I~PCGl~~~~vTSl~~~~~~~~~~~~~~~~~~~~~ 155 (191)
.+||||+ ++||||||+++++|+|||||||||++||++|+.|+|||+.|..||||++ ++.. ++
T Consensus 136 ~~GVwv~~~~~~~~KIaaIGv~v~r~vT~HG~ALNv~~DL~~F~~I~PCGl~~~~vTSL~~-lg~~---------~~--- 202 (235)
T PRK14343 136 APGIYVASGPHQGAKIAALGLKIRNGCSYHGLSLNVKMDLRPFLAINPCGYAGLETVDMAS-LGVA---------AD--- 202 (235)
T ss_pred CCeEEEeCCCCCCCeEEEEeeeeecceeecccEEEeCCCchhhCcEECCCCCCCcEeeHHH-hCCC---------CC---
Confidence 9999998 8999999999999999999999999999999999999999999999965 4432 33
Q ss_pred hHHHHHHHHHHHHHHhccccccc
Q 029546 156 LIDIAHNSLIKEFSEVFQLEIHN 178 (191)
Q Consensus 156 ~~~~v~~~l~~~F~~~F~~~~~~ 178 (191)
+++|++.|+++|++.|+.....
T Consensus 203 -~~~v~~~l~~~f~~~f~~~~~~ 224 (235)
T PRK14343 203 -WADVAQTLARRLIANLDGAAAA 224 (235)
T ss_pred -HHHHHHHHHHHHHHHhCccccc
Confidence 7899999999999999987765
No 8
>PRK14341 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=2.7e-59 Score=394.43 Aligned_cols=156 Identities=42% Similarity=0.753 Sum_probs=146.1
Q ss_pred CCCCCCcccccCCCCCCCCeEEEcCcCCceeEeCCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcCCcceecCC
Q 029546 1 MGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEG 80 (191)
Q Consensus 1 lGr~~~~~~l~~~~~~~gi~v~~~~RGG~iTyHgPGQLV~YpIl~L~~~~~~v~~yv~~Le~~vi~~L~~~gi~a~~~~~ 80 (191)
+||+++++|++. ..+++|++|+|||++|||||||||+|||+||++.+.++++|++.||+++|++|+.|||++.++++
T Consensus 49 ~G~~~~~~~ll~---~~~i~v~~t~RGG~iTyHGPGQlV~YpIl~L~~~~~~v~~yv~~lE~~iI~~l~~~gi~~~~~~~ 125 (213)
T PRK14341 49 AGTSAKAEDLLD---PDRFPVYETGRGGQYTYHGPGQRVAYVMLDLKRRRRDVRAFVAALEEWIIATLAAFNIRGERRED 125 (213)
T ss_pred CCCCCChhhccC---CCCCCEEEeCCCcceeEECCCeEEEEEEEEccccCCCHHHHHHHHHHHHHHHHHHhCCceEEcCC
Confidence 699999999974 45899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEeCC--------CeEEEecceEeCcEEEEeeEEeecCCCCCCCceecCCCCCCceeeechhhcCccccccccCCCC
Q 029546 81 LTGVWVGD--------QKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPD 152 (191)
Q Consensus 81 ~~GVwv~~--------~KIasiGv~i~~~vt~HG~aLNV~~dL~~f~~I~PCGl~~~~vTSl~~~~~~~~~~~~~~~~~~ 152 (191)
.+||||++ +||||||++++||+|||||||||++||++|+.|+|||+.|+.||||++ ++.. ++
T Consensus 126 ~~GVWv~~~~~~~~~~~KIaaIGv~v~r~vT~HG~ALNv~~dL~~F~~IvPCGl~~~~vTSl~~-~g~~---------~~ 195 (213)
T PRK14341 126 RVGVWVRRPDKGSGAEDKIAAIGVRLRRWVSFHGISINVEPDLSHFSGIVPCGISEHGVTSLVD-LGLP---------VT 195 (213)
T ss_pred CCeEEecCccCCCCCCCcEEEEeeeEecceeccceEEEecCChhhhCcEecCCCCCCcEeeHHH-hCCC---------CC
Confidence 99999984 899999999999999999999999999999999999999999999987 4432 33
Q ss_pred hhhhHHHHHHHHHHHHHHhcc
Q 029546 153 DCKLIDIAHNSLIKEFSEVFQ 173 (191)
Q Consensus 153 ~~~~~~~v~~~l~~~F~~~F~ 173 (191)
+++|++.++++|++.|+
T Consensus 196 ----~~~v~~~l~~~f~~~f~ 212 (213)
T PRK14341 196 ----MDDVDAALKKAFEKVFG 212 (213)
T ss_pred ----HHHHHHHHHHHHHHHhC
Confidence 78999999999999995
No 9
>PRK14349 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=3.6e-59 Score=394.60 Aligned_cols=166 Identities=33% Similarity=0.584 Sum_probs=152.5
Q ss_pred CCCCCCcccccCCCCCCCCeEEEcCcCCceeEeCCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcCCc-ceecC
Q 029546 1 MGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIK-ASRVE 79 (191)
Q Consensus 1 lGr~~~~~~l~~~~~~~gi~v~~~~RGG~iTyHgPGQLV~YpIl~L~~~~~~v~~yv~~Le~~vi~~L~~~gi~-a~~~~ 79 (191)
+||+++++|++. ..+++|++|+|||++|||||||||+|||+||++.+.++++|++.||+++|++|++|||+ +.+++
T Consensus 44 ~G~~~~~~~ll~---~~~i~vv~t~RGG~iTyHGPGQLV~YpIldL~~~~~~vr~yv~~LE~~~I~~l~~~gi~~a~~~~ 120 (220)
T PRK14349 44 LGQAGRPEHLLN---PGLIPVVHCDRGGQVTYHGPGQVLAYTLFDLRRAGLYVREYVDMLEQATLATLRELGLEQACRKP 120 (220)
T ss_pred CCCCCChhhccC---CCCCcEEEecCCcceEEeCCCcEEEEEEEEcccCCCCHHHHHHHHHHHHHHHHHHhCCcceeecC
Confidence 699999999973 45799999999999999999999999999999999999999999999999999999999 99999
Q ss_pred CCceeEeC-----CCeEEEecceEeCcEEEEeeEEeecCCCCCCCceecCCCCCCceeeechhhcCccccccccCCCChh
Q 029546 80 GLTGVWVG-----DQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDC 154 (191)
Q Consensus 80 ~~~GVwv~-----~~KIasiGv~i~~~vt~HG~aLNV~~dL~~f~~I~PCGl~~~~vTSl~~~~~~~~~~~~~~~~~~~~ 154 (191)
+.+||||+ ++||||||+++++|+|||||||||++||++|+.|+|||++|..||||+++ +.. ++
T Consensus 121 ~~~GVWv~~~~~~~~KIaaiGv~v~r~vT~HG~ALNv~~DL~~F~~IvPCGl~~~~vTSl~~~-g~~---------~~-- 188 (220)
T PRK14349 121 GAPGIYVPQPGGELAKIAALGVKVRNGYAYHGLALNIDMDLSPFLGINPCGYEGLRTVDLAAC-GVR---------TS-- 188 (220)
T ss_pred CCCcEEeCCCCCCCceEEEEeeEEecceeecceeEEecCCchhhCcEEcCCCCCCcEeeHHHh-CCC---------CC--
Confidence 99999998 48999999999999999999999999999999999999999999999774 432 33
Q ss_pred hhHHHHHHHHHHHHHHhcccccccCCCch
Q 029546 155 KLIDIAHNSLIKEFSEVFQLEIHNKAIPL 183 (191)
Q Consensus 155 ~~~~~v~~~l~~~F~~~F~~~~~~~~~~~ 183 (191)
++++.+.|+++|++.|+.+....+++.
T Consensus 189 --~~~v~~~l~~~f~~~f~~~~~~~~~~~ 215 (220)
T PRK14349 189 --VERAGELLAAQLARAHGQAVQQRAAAL 215 (220)
T ss_pred --HHHHHHHHHHHHHHHhCccchhhhhcc
Confidence 789999999999999999886655544
No 10
>PRK14347 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=1.9e-58 Score=388.14 Aligned_cols=156 Identities=42% Similarity=0.748 Sum_probs=143.8
Q ss_pred CCCCCCcccccCCCCCCCCeEEEcCcCCceeEeCCCCeEEEEeeecCCC--CCCHHHHHHHHHHHHHHHHhhcCCcceec
Q 029546 1 MGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNH--KMDLHWYLRALEEVAIRVLSTFSIKASRV 78 (191)
Q Consensus 1 lGr~~~~~~l~~~~~~~gi~v~~~~RGG~iTyHgPGQLV~YpIl~L~~~--~~~v~~yv~~Le~~vi~~L~~~gi~a~~~ 78 (191)
+||+++++|++. ..+++|++|+|||++|||||||||+|||+||++. +.++++|++.||+++|++|+.|||++++.
T Consensus 47 ~G~~~~~~~ll~---~~~i~v~~t~RGG~vTyHGPGQlV~YpIldL~~~~~~~~v~~yv~~lE~~ii~~l~~~gi~~~~~ 123 (209)
T PRK14347 47 AGTNYKQEELLN---YGDIPVIYTGRGGKFTFHGPGQRVIYPILNLASPNRHKDLKLYIKMLEEWIINSLNYFGIKAYII 123 (209)
T ss_pred CCCCCChhhccc---ccCCcEEEecCCcceEEeCCCcEEEEEEEeccccccCCCHHHHHHHHHHHHHHHHHHcCCceEEc
Confidence 699999999873 4589999999999999999999999999999864 56999999999999999999999999999
Q ss_pred CCCceeEeC-----CCeEEEecceEeCcEEEEeeEEeecCCCCCCCceecCCCCCCceeeechhhcCccccccccCCCCh
Q 029546 79 EGLTGVWVG-----DQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDD 153 (191)
Q Consensus 79 ~~~~GVwv~-----~~KIasiGv~i~~~vt~HG~aLNV~~dL~~f~~I~PCGl~~~~vTSl~~~~~~~~~~~~~~~~~~~ 153 (191)
++.+||||+ ++||||||+++++|+|+|||||||++||++|+.|+|||++|..||||+++ +. +++
T Consensus 124 ~~~~GVWv~~~~~~~~KIaaiGv~v~r~vT~HG~AlNv~~dL~~F~~IvPCGl~~~~vTSl~~~-g~---------~~~- 192 (209)
T PRK14347 124 KDKVGIWVKVRKDEFAKIAAIGVRVRKWVTYHGVAINISTDLSKFSGIIPCGLENSLVTSLNQL-GI---------HVE- 192 (209)
T ss_pred CCCCEEEEcCCCCCCceEEEEeEEEecceeecceEEEeCCCccccCcEECCCCCCCcEeeHHHh-CC---------CCC-
Confidence 999999997 58999999999999999999999999999999999999999999999874 33 233
Q ss_pred hhhHHHHHHHHHHHHHHhcc
Q 029546 154 CKLIDIAHNSLIKEFSEVFQ 173 (191)
Q Consensus 154 ~~~~~~v~~~l~~~F~~~F~ 173 (191)
++++.+.++++|++.|+
T Consensus 193 ---~~~v~~~l~~~f~~~f~ 209 (209)
T PRK14347 193 ---MSEFDKIIQTEFNKIFK 209 (209)
T ss_pred ---HHHHHHHHHHHHHHHhC
Confidence 78899999999999885
No 11
>PRK14346 lipoate-protein ligase B; Provisional
Probab=100.00 E-value=1.6e-57 Score=386.79 Aligned_cols=156 Identities=38% Similarity=0.643 Sum_probs=145.1
Q ss_pred CCCCCCcccccCCCCCCCCeEEEcCcCCceeEeCCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcCCcceecCC
Q 029546 1 MGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEG 80 (191)
Q Consensus 1 lGr~~~~~~l~~~~~~~gi~v~~~~RGG~iTyHgPGQLV~YpIl~L~~~~~~v~~yv~~Le~~vi~~L~~~gi~a~~~~~ 80 (191)
+||+++++|++. ..+++|++|+|||++|||||||||+|||+||++.+.++++|++.||+++|++|+.|||+++++++
T Consensus 46 ~G~~~~~~~ll~---~~~i~v~~tdRGG~iTyHGPGQlV~YpildL~~~~~~vr~yv~~lE~~vI~~l~~~gi~~~~~~~ 122 (230)
T PRK14346 46 QGLAGKADHVLN---PGDIPVVATNRGGQVTYHGPGQVVAYPLIDLRRAGYFVKEYVYRIEEAVIRTLAHFGVTGHRVAG 122 (230)
T ss_pred CCCCCChhhccC---CCCCcEEEeCCCcceeEECCCeEEEEEEEeccccCCCHHHHHHHHHHHHHHHHHHhCCceEEcCC
Confidence 699999999973 45899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEeC----------------------------CCeEEEecceEeCcEEEEeeEEeecCCCCCCCceecCCCCCCcee
Q 029546 81 LTGVWVG----------------------------DQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVG 132 (191)
Q Consensus 81 ~~GVwv~----------------------------~~KIasiGv~i~~~vt~HG~aLNV~~dL~~f~~I~PCGl~~~~vT 132 (191)
.+||||+ ++||||||++++||+|||||||||++||++|+.|+|||+.|..||
T Consensus 123 ~~GVWv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KIaAiGv~v~r~vT~HG~ALNv~~DL~~F~~IvPCGl~~~~vT 202 (230)
T PRK14346 123 APGIYVRLDDPFSHAALPQRPQKRGGGAPQPPFRGLGKIAALGIKVSRHCTYHGVALNVAMDLEPFSRINPCGYAGLQTV 202 (230)
T ss_pred CCEEEEcCCCccccccccccccccccccccccccccceEEEEeeEEecceeecceeEEcCCChhhhCcEECCCCCCCcee
Confidence 9999996 269999999999999999999999999999999999999999999
Q ss_pred eechhhcCccccccccCCCChhhhHHHHHHHHHHHHHHhcc
Q 029546 133 SIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQ 173 (191)
Q Consensus 133 Sl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~~~F~ 173 (191)
||++ ++.. ++ +++|++.++++|++.|+
T Consensus 203 SL~~-lg~~---------~~----~~~v~~~l~~~f~~~~~ 229 (230)
T PRK14346 203 DLST-IGVQ---------TT----WDEAASVLGQQLARYLA 229 (230)
T ss_pred eHHH-hCCC---------CC----HHHHHHHHHHHHHHHhC
Confidence 9975 4432 33 78999999999999884
No 12
>KOG0325 consensus Lipoyltransferase [Energy production and conversion; Coenzyme transport and metabolism]
Probab=100.00 E-value=1.1e-45 Score=310.00 Aligned_cols=148 Identities=46% Similarity=0.720 Sum_probs=132.8
Q ss_pred CCCCCCeEEEcCcCCceeEeCCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcCCcceecCCCceeEeCCCeEEE
Q 029546 14 LKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEGLTGVWVGDQKLAA 93 (191)
Q Consensus 14 ~~~~gi~v~~~~RGG~iTyHgPGQLV~YpIl~L~~~~~~v~~yv~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~KIas 93 (191)
+.+.|.+++++.|||++|||||||+++|||+||++.+.+.|+||..|| +++..|||++......+||||+++|||+
T Consensus 71 l~~~ga~~~~t~RGG~iTfHGPgQl~~ypIidL~~f~~~~r~~Vs~le----~~c~~~~i~~~~~t~~tgvwV~d~k~aa 146 (226)
T KOG0325|consen 71 LYKLGAEFHKTERGGLITFHGPGQLVAYPIIDLRHFGFSARCYVSTLE----AACPDFGIKGTASTKDTGVWVGDAKIAA 146 (226)
T ss_pred hhhcCceEEEeecCceEEEeCCCceEEEEEEEeeccccchhhHHHHHH----hhcccccccccccccccceeecCCeeEE
Confidence 567899999999999999999999999999999999999999999999 6678899998877779999999999999
Q ss_pred ecceEeCcEEEEeeEEeecCCCCCCCceecCCCCCCceeeechhhcCccccccccCCCChhhhHHHHHHHHHHHHHHhcc
Q 029546 94 IGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQ 173 (191)
Q Consensus 94 iGv~i~~~vt~HG~aLNV~~dL~~f~~I~PCGl~~~~vTSl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~~~F~ 173 (191)
||+++++||||||+||||++||+||++|+|||+.++.+||++++..+.. + ..++.+.+...|.++|.
T Consensus 147 iGi~vsr~IT~HGlaLN~~tDL~~fnhiv~CGi~~~~vtSi~~e~~~~~---------~----~~~~~~~~l~~l~k~f~ 213 (226)
T KOG0325|consen 147 IGIRVSREITYHGLALNVNTDLTYFNHIVPCGIYGRGVTSISKEIRRLV---------T----VEESVAIRLVSLTKVFS 213 (226)
T ss_pred EEEEecCcEeecceEEEeccCcchhhccccceeeccccceehhhhcccc---------c----hhHhHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999998887643 2 24555666666888888
Q ss_pred ccccc
Q 029546 174 LEIHN 178 (191)
Q Consensus 174 ~~~~~ 178 (191)
+.+.+
T Consensus 214 ~~~~~ 218 (226)
T KOG0325|consen 214 CMLQE 218 (226)
T ss_pred hheec
Confidence 76654
No 13
>PRK08330 biotin--protein ligase; Provisional
Probab=99.63 E-value=5.7e-15 Score=125.50 Aligned_cols=128 Identities=20% Similarity=0.229 Sum_probs=104.9
Q ss_pred CcCCceeEeCCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcCCcceecCCCceeEeCCCeEEEecceEeCcEEE
Q 029546 25 ERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEGLTGVWVGDQKLAAIGIRVSQWIAY 104 (191)
Q Consensus 25 ~RGG~iTyHgPGQLV~YpIl~L~~~~~~v~~yv~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~KIasiGv~i~~~vt~ 104 (191)
-|.|..++.-||+|.++.+++.......+..+.-...-+++++|+.+|++...++ .++||++++|||+|++....+...
T Consensus 41 GR~gr~W~Sp~G~l~~S~~l~~~~~~~~~~~l~~~~~~av~~~l~~~g~~~~iKW-PNDI~~~~kKi~GILiE~~~~~~v 119 (236)
T PRK08330 41 GRKGRAWASPEGGLWMSVILKPKVSPEHLPKLVFLGALAVVDTLREFGIEGKIKW-PNDVLVNYKKIAGVLVEGKGDFVV 119 (236)
T ss_pred CCCCCeeeCCCCCeEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCccccC-CCeEEECCeEEEEEeEEEeCCEEE
Confidence 4889999999999999999976543334555656667789999999999988887 899999999999999999888999
Q ss_pred EeeEEeecCCCCCCCceecCCCCCCceeeechhhcCccccccccCCCChhhhHHHHHHHHHHHHHHhccc
Q 029546 105 HGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQL 174 (191)
Q Consensus 105 HG~aLNV~~dL~~f~~I~PCGl~~~~vTSl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~~~F~~ 174 (191)
||+.|||+++ .||++.+ .+|||.++.+.. ++ .+++...+.++|.+.|..
T Consensus 120 iGiGiNv~~~-------~p~~l~~-~atsL~~~~~~~---------~~----~~~l~~~l~~~l~~~~~~ 168 (236)
T PRK08330 120 LGIGLNVNNE-------IPDELRE-TATSMKEVLGRE---------VP----LIEVFKRLVENLDRWYKL 168 (236)
T ss_pred EEEEEecCCC-------CCccccc-ccccHHHhhCCC---------CC----HHHHHHHHHHHHHHHHHH
Confidence 9999999986 3999986 699998877653 33 456677778888776653
No 14
>PF03099 BPL_LplA_LipB: Biotin/lipoate A/B protein ligase family This entry is just a subset of the Pfam family; InterPro: IPR004143 This domain is found in biotin protein ligase, lipoate-protein ligase A and B. Biotin is covalently attached at the active site of certain enzymes that transfer carbon dioxide from bicarbonate to organic acids to form cellular metabolites. Biotin protein ligase (BPL) is the enzyme responsible for attaching biotin to a specific lysine at the active site of biotin enzymes. Each organism probably has only one BPL. Biotin attachment is a two step reaction that results in the formation of an amide linkage between the carboxyl group of biotin and the epsilon-amino group of the modified lysine []. Lipoate-protein ligase A (LPLA) (octanoyltransferase) catalyses the formation of an amide linkage between lipoic acid and a specific lysine residue in lipoate dependent enzymes [].; GO: 0003824 catalytic activity, 0006464 protein modification process; PDB: 2ARU_A 2C8M_B 2C7I_A 3R07_A 2ARS_A 2ART_A 3FJP_A 3EFR_B 2EAY_B 3EFS_B ....
Probab=99.47 E-value=8.2e-13 Score=99.89 Aligned_cols=100 Identities=18% Similarity=0.224 Sum_probs=83.9
Q ss_pred CCCCCCeEEEcCcCCceeEeCCCCeEEEEeeecCCC----CCCHHHHHHHHHHHHHHHHh-----hcCCcceecCCCcee
Q 029546 14 LKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNH----KMDLHWYLRALEEVAIRVLS-----TFSIKASRVEGLTGV 84 (191)
Q Consensus 14 ~~~~gi~v~~~~RGG~iTyHgPGQLV~YpIl~L~~~----~~~v~~yv~~Le~~vi~~L~-----~~gi~a~~~~~~~GV 84 (191)
+++.++++.++.+||..+||+|+|.+.|.++-.... ...+..|+..+...+++.|. ..++....+. .++|
T Consensus 17 ~~~~~v~v~~rqtgG~~~w~~p~g~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~kw-~nDi 95 (125)
T PF03099_consen 17 LKEGGVPVARRQTGGRRVWHSPPGNLYFSLILPPDDPNFPPSDIPSYILLAALAVLEALGEFGPGEPGIDCFIKW-PNDI 95 (125)
T ss_dssp HHCTTEEEEEESSSSBEEEEBTTTEEEEEEEEETTTTTHHGGGHHHHHHHHHHHHHHHHHHTTHTTTTSSEEEET-TTEE
T ss_pred CccCCEEEEEEeeCCcceeeeCCcEEEEEEEEccccccccchhhhHHHHHHHHHHHHHhhhhccccCCCceEEeC-CCCc
Confidence 357799999999999999999888888888755432 24678888888888888883 4467777774 8999
Q ss_pred EeCCCeEEEecceEeCcEEEEeeEEeecCC
Q 029546 85 WVGDQKLAAIGIRVSQWIAYHGLALNVTTD 114 (191)
Q Consensus 85 wv~~~KIasiGv~i~~~vt~HG~aLNV~~d 114 (191)
++++||||+++++..++..+|++++||+.|
T Consensus 96 ~~~~kKi~Gil~~~~~~~~~~~~~igig~N 125 (125)
T PF03099_consen 96 YVNGKKIAGILQERRRGGILHHGSIGIGIN 125 (125)
T ss_dssp EETTEEEEEEEEEEETTEEEEEEEEESSEE
T ss_pred cCCCcEEEEEeEeeeCCcEEEEEEEEEecC
Confidence 999999999999999999999999999864
No 15
>PRK03822 lplA lipoate-protein ligase A; Provisional
Probab=99.35 E-value=8.5e-12 Score=112.01 Aligned_cols=163 Identities=16% Similarity=0.247 Sum_probs=111.4
Q ss_pred CCCCCCcc-cccCC-CCCCCCeEEEcCcCCceeEeCCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcCCcceec
Q 029546 1 MGTGGSEE-YLNFD-LKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRV 78 (191)
Q Consensus 1 lGr~~~~~-~l~~~-~~~~gi~v~~~~RGG~iTyHgPGQLV~YpIl~L~~~~~~v~~yv~~Le~~vi~~L~~~gi~a~~~ 78 (191)
|||..++. .+..+ .++.||+|+|...||++.||++|++-...|.+-. ..+. ....+.++++|+.+||++...
T Consensus 46 IGr~Qn~~~Evn~~~~~~~gI~vvRR~SGGGAVyhD~Gnl~~s~i~~~~--~~~~----~~~~~~ii~aL~~lGi~a~~~ 119 (338)
T PRK03822 46 IGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVFHDLGNTCFTFMAGKP--EYDK----TISTSIVLNALNSLGVSAEAS 119 (338)
T ss_pred ECCCCCHHHHhCHHHHHHcCCcEEEECCCCceEEEcCCCcEEEEEeCCC--ccCH----HHHHHHHHHHHHHcCCceeEC
Confidence 35555543 33333 3578999999999999999999998555544321 1221 123568999999999999986
Q ss_pred CCCceeEeC----CCeEEEecceEeC-cEEEEeeEEeecCCCCCCCc-eec--CCCCCC-------ceeeechhhcCccc
Q 029546 79 EGLTGVWVG----DQKLAAIGIRVSQ-WIAYHGLALNVTTDLTPFRW-IVP--CGIQNR-------HVGSIKGLLGESQS 143 (191)
Q Consensus 79 ~~~~GVwv~----~~KIasiGv~i~~-~vt~HG~aLNV~~dL~~f~~-I~P--CGl~~~-------~vTSl~~~~~~~~~ 143 (191)
+ +++++++ ++||+...-+..+ .+-+||.-| +++|++.+.. +.| -.+..+ +||+|.++++.
T Consensus 120 ~-rnDi~v~~~~g~kKisGsAq~~~~~~~l~HGTlL-~~~d~~~l~~~L~~~~~k~~skgv~Sv~srVtnl~~~~~~--- 194 (338)
T PRK03822 120 G-RNDLVVKTAEGDRKVSGSAYRETKDRGFHHGTLL-LNADLSRLANYLNPDKKKLQAKGITSVRSRVTNLTELLPG--- 194 (338)
T ss_pred C-CccEEEecCCCCcEEEEEeeeeeCCeEEEEEEEE-ecCCHHHHHHHhCCChhhhhhccccchHhhhccHHHhCCC---
Confidence 5 8999995 6999999777765 566777766 8888765432 222 234433 46666655442
Q ss_pred cccccCCCChhhhHHHHHHHHHHHHHHhcccccccCCCchhh
Q 029546 144 LTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLEIHNKAIPLSE 185 (191)
Q Consensus 144 ~~~~~~~~~~~~~~~~v~~~l~~~F~~~F~~~~~~~~~~~~~ 185 (191)
++ ++++.+.|.+.|.+.|+.......++..|
T Consensus 195 -------~~----~e~~~~~l~~~f~~~~~~~~~~~~lt~~e 225 (338)
T PRK03822 195 -------IT----HEQVCEAITEAFFAHYGERVEAEVISPDK 225 (338)
T ss_pred -------CC----HHHHHHHHHHHHHHHhCCCCCccccCHHH
Confidence 23 78899999999999998655444444433
No 16
>COG0095 LplA Lipoate-protein ligase A [Coenzyme metabolism]
Probab=99.34 E-value=9.9e-12 Score=106.82 Aligned_cols=164 Identities=20% Similarity=0.281 Sum_probs=116.3
Q ss_pred CCCCCeEEEcCcCCceeEeCCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcCCcceecCCCceeEeCCCeEEEe
Q 029546 15 KDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEGLTGVWVGDQKLAAI 94 (191)
Q Consensus 15 ~~~gi~v~~~~RGG~iTyHgPGQLV~YpIl~L~~~~~~v~~yv~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~KIasi 94 (191)
++.+++|+|.+.||+..||++|++-.-.|++-.............+-+.++++|..+|+++...++.+++-++++||+..
T Consensus 62 ~~~~i~vvRR~sGGGaV~hd~g~l~~S~i~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~~~~~nDl~v~gkKisG~ 141 (248)
T COG0095 62 KEDGIPVVRRPSGGGAVFHDLGNLNYSVITPDEGGLESYETLYKFLLQPVIDALRALGVEGAECPGRNDLVVDGKKISGS 141 (248)
T ss_pred HHcCCcEEEEcCCCceEEecCCcEEEEEEECCCCccccHHHHHHHHHHHHHHHHHHcCCCeeccCCCcceeEcCcEEeeH
Confidence 45789999999999999999996666666655544456777777888899999999999955556689999999999999
Q ss_pred cceEe-CcEEEEeeEEeecCCCCCCCce--ec-CCCCCCceeeechhhcCccccccccCCCChhhhHHHHHHHHHHHHHH
Q 029546 95 GIRVS-QWIAYHGLALNVTTDLTPFRWI--VP-CGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSE 170 (191)
Q Consensus 95 Gv~i~-~~vt~HG~aLNV~~dL~~f~~I--~P-CGl~~~~vTSl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~~ 170 (191)
.-+.. +.+-.||.-| ++.|++-+... +| -.+.++.++|+.+-....... ..++ ++++.+.+.+.|.+
T Consensus 142 Aq~~~~~~~l~hgtll-~~~d~~~l~~~l~~~~~k~~~k~~~s~~~rv~~l~~~----~~~~----~~e~~~~l~~~f~~ 212 (248)
T COG0095 142 AQRRTKGRILHHGTLL-LDIDLELLARVLRVPKEKIKSKGIKSVRERVANLEEL----LKIS----VEEFLEALLEAFFK 212 (248)
T ss_pred HHHhhCCcEEEEEEEE-EeCCHHHHHHHhCCChhhhhhcccccHHHhCcchhhc----cCCC----HHHHHHHHHHHHHH
Confidence 66664 5678888766 77776543332 22 234555555554433221100 1234 78899999999999
Q ss_pred hcccccccCCCchhhhh
Q 029546 171 VFQLEIHNKAIPLSEHL 187 (191)
Q Consensus 171 ~F~~~~~~~~~~~~~~~ 187 (191)
.++.+......+..|+.
T Consensus 213 ~~~~~~~~~~lt~~e~~ 229 (248)
T COG0095 213 VLGVELEEYELTPEELE 229 (248)
T ss_pred hhCCCccccCCCHHHHH
Confidence 99865565555555554
No 17
>TIGR00545 lipoyltrans lipoyltransferase and lipoate-protein ligase. One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from E. coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus.
Probab=99.33 E-value=1.6e-11 Score=109.62 Aligned_cols=142 Identities=15% Similarity=0.242 Sum_probs=103.9
Q ss_pred CCCCCeEEEcCcCCceeEeCCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcCCcceecCCCceeEeCCCeEEEe
Q 029546 15 KDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEGLTGVWVGDQKLAAI 94 (191)
Q Consensus 15 ~~~gi~v~~~~RGG~iTyHgPGQLV~YpIl~L~~~~~~v~~yv~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~KIasi 94 (191)
++.||+|+|...||+..||++|++-.-.|.+-.. .....| +.+.+.++++|+.+||++...+ .+++.++++||+..
T Consensus 61 ~~~gi~vvRR~sGGGaVyhD~g~l~~s~i~~~~~--~~~~~~-~~~~~~i~~aL~~lGi~a~~~~-rnDl~v~gkKisGs 136 (324)
T TIGR00545 61 EEDNVNLFRRFSGGGAVFHDLGNICFSFITPKDG--KEFENA-KIFTRNVIKALNSLGVEAELSG-RNDLVVDGRKISGS 136 (324)
T ss_pred HHcCCeEEEECCCCceEEEcCCceEEEEEEcCCc--cchhhH-HHHHHHHHHHHHHhCCCeEECC-CceEEECCEEEEEE
Confidence 5689999999999999999999976666665421 233456 7778899999999999998875 79999999999999
Q ss_pred cceEeCc-EEEEeeEEeecCCCCCCCc-eec--CCCCCC-------ceeeechhhcCccccccccCCCChhhhHHHHHHH
Q 029546 95 GIRVSQW-IAYHGLALNVTTDLTPFRW-IVP--CGIQNR-------HVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNS 163 (191)
Q Consensus 95 Gv~i~~~-vt~HG~aLNV~~dL~~f~~-I~P--CGl~~~-------~vTSl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (191)
..+..++ +.+||.-| +++|++.... +.| -.+..+ +||+|.++++. ++ ++++.+.
T Consensus 137 Aq~~~~~~~l~HGtlL-~~~d~~~l~~~L~~~~~k~~skgv~sv~~rv~nl~~~l~~----------~~----~e~~~~~ 201 (324)
T TIGR00545 137 AYYITKDRGFHHGTLL-FDADLSKLAKYLNVDKTKIESKGITSVRSRVVNVKEYLPN----------IT----TEQFLEE 201 (324)
T ss_pred eeeeeCCEEEEEEEEE-ccCCHHHHHHhcCCChhhhHhhcccchhhhcccHHHhCCC----------CC----HHHHHHH
Confidence 8777665 56777766 8888764433 222 233333 46666665542 23 6788889
Q ss_pred HHHHHHHhccccc
Q 029546 164 LIKEFSEVFQLEI 176 (191)
Q Consensus 164 l~~~F~~~F~~~~ 176 (191)
|.+.|.+ ++.+.
T Consensus 202 l~~~f~~-~~~~~ 213 (324)
T TIGR00545 202 MTQAFFT-YTERV 213 (324)
T ss_pred HHHHHHh-hCCCC
Confidence 9999987 54443
No 18
>PRK14061 unknown domain/lipoate-protein ligase A fusion protein; Provisional
Probab=99.20 E-value=1.4e-10 Score=110.10 Aligned_cols=163 Identities=15% Similarity=0.235 Sum_probs=111.5
Q ss_pred CCCCCCcc-cccCC-CCCCCCeEEEcCcCCceeEeCCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcCCcceec
Q 029546 1 MGTGGSEE-YLNFD-LKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRV 78 (191)
Q Consensus 1 lGr~~~~~-~l~~~-~~~~gi~v~~~~RGG~iTyHgPGQLV~YpIl~L~~~~~~v~~yv~~Le~~vi~~L~~~gi~a~~~ 78 (191)
+||..+.. .+..+ .++.||+|+|...||++.||++|++-.-.|.+- ...+. ....+.++++|+.+||++...
T Consensus 270 IGrnQN~~~EVNl~~~~~~gI~vVRR~SGGGAVYHD~GNlnfSfi~~~--~~~~~----~~~~~~Ii~aL~~LGI~ae~s 343 (562)
T PRK14061 270 IGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVFHDLGNTCFTFMAGK--PEYDK----TISTSIVLNALNALGVSAEAS 343 (562)
T ss_pred ECCCCCchhhhCHHHHHhcCCcEEEECCCCcEEEEcCCceEEEEEeCC--cccch----HHHHHHHHHHHHHcCCCeEEC
Confidence 45555554 33333 357899999999999999999999644444432 12222 223578999999999999986
Q ss_pred CCCceeEe----CCCeEEEecceEeC-cEEEEeeEEeecCCCCCCCc-ee--cCCCCCC-------ceeeechhhcCccc
Q 029546 79 EGLTGVWV----GDQKLAAIGIRVSQ-WIAYHGLALNVTTDLTPFRW-IV--PCGIQNR-------HVGSIKGLLGESQS 143 (191)
Q Consensus 79 ~~~~GVwv----~~~KIasiGv~i~~-~vt~HG~aLNV~~dL~~f~~-I~--PCGl~~~-------~vTSl~~~~~~~~~ 143 (191)
+ ++++.+ +++||+...-++.+ .+-+||.-| ++.|++.... +. +-.+..+ +||+|+++++.
T Consensus 344 g-RNDI~v~~~~~GkKISGsAq~~~~~~~lhHGTLL-~d~dl~~L~~~L~~~~~Kl~sKgvkSVrsRVtNL~e~l~~--- 418 (562)
T PRK14061 344 G-RNDLVVKTAEGDRKVSGSAYRETKDRGFHHGTLL-LNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLPG--- 418 (562)
T ss_pred C-CccEEEeeCCCCcEEEEEeEEEeCCeEEEEEEEE-ecCCHHHHHHHhCCCchhhhhhhhhhHHhhceeHHHhCCC---
Confidence 5 899999 68999999777765 566677666 8888764432 22 2244443 36666665542
Q ss_pred cccccCCCChhhhHHHHHHHHHHHHHHhcccccccCCCchhh
Q 029546 144 LTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLEIHNKAIPLSE 185 (191)
Q Consensus 144 ~~~~~~~~~~~~~~~~v~~~l~~~F~~~F~~~~~~~~~~~~~ 185 (191)
++ ++++.+.+.+.|.+.|+.+......+..|
T Consensus 419 -------it----~e~f~~~L~~~f~~~~g~~~~~~~Lt~~e 449 (562)
T PRK14061 419 -------IP----HEQVCEAITEAFFAHYGERVEAEIISPDK 449 (562)
T ss_pred -------CC----HHHHHHHHHHHHHHHcCCCCccccCCHHH
Confidence 23 68899999999999998765544444333
No 19
>PRK05935 biotin--protein ligase; Provisional
Probab=98.71 E-value=5.5e-07 Score=75.11 Aligned_cols=131 Identities=20% Similarity=0.201 Sum_probs=91.8
Q ss_pred CcCCceeEeCCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcCC-cceecCCCceeEeCCCeEEEecceEe----
Q 029546 25 ERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSI-KASRVEGLTGVWVGDQKLAAIGIRVS---- 99 (191)
Q Consensus 25 ~RGG~iTyHgPGQLV~YpIl~L~~~~~~v~~yv~~Le~~vi~~L~~~gi-~a~~~~~~~GVwv~~~KIasiGv~i~---- 99 (191)
.|.|..++.-||.|..-.++.......++......--.++.++++.+++ +...++ .++||++++|||.|=+...
T Consensus 43 GR~GR~W~Sp~G~L~~Si~l~~~~~~~~~~~~~~l~~~av~~~l~~~~~~~~~iKW-PNDI~~~~kKi~GILiE~~~~~~ 121 (190)
T PRK05935 43 GKFGKSWHSSDQDLLASFCFFITVLNIDVSLLFRLGTEAVMRLGEDLGITEAVIKW-PNDVLVHGEKLCGVLCETIPVKG 121 (190)
T ss_pred CCCCCeeeCCCCCeEEEEEEccCCCCcCHHHHHHHHHHHHHHHHHHhCCccccccC-CCeEEECCcEEEEEEEeccccCC
Confidence 4889999999999888887765544444443332222467888888887 467777 7999999999999977652
Q ss_pred CcEEEEeeEEeecCCCCCCCceecCCCCCCceeeechhhcCccccccccCCCChhhhHHHHHHHHHHHHHHhcccc
Q 029546 100 QWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLE 175 (191)
Q Consensus 100 ~~vt~HG~aLNV~~dL~~f~~I~PCGl~~~~vTSl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~~~F~~~ 175 (191)
.....=|+.+||+.+.+.|. ++ ...+|||+.+.+.. ++ .+++...++++|.+.+-..
T Consensus 122 ~~~vVIGIGINv~~~~~~~~-----~~-~~~atsL~~~~~~~---------~~----~~~l~~~l~~~l~~~~~~~ 178 (190)
T PRK05935 122 GLGVILGIGVNGNTTKDELL-----GI-DQPATSLQELLGHP---------ID----LEEQRERLIKHIKHVLIQT 178 (190)
T ss_pred CcEEEEEEeEecCCCchhcc-----cc-CCCcccHHHhhCCC---------CC----HHHHHHHHHHHHHHHHHHH
Confidence 24578899999997654432 12 23589998877653 33 3566677777777766543
No 20
>COG0340 BirA Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]
Probab=98.54 E-value=9.3e-07 Score=76.11 Aligned_cols=129 Identities=19% Similarity=0.148 Sum_probs=94.2
Q ss_pred CcCCceeEeCCC-CeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcCCcceecCCCceeEeCCCeEEEecceEeCc--
Q 029546 25 ERGGEVTYHGPG-QLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEGLTGVWVGDQKLAAIGIRVSQW-- 101 (191)
Q Consensus 25 ~RGG~iTyHgPG-QLV~YpIl~L~~~~~~v~~yv~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~KIasiGv~i~~~-- 101 (191)
-|.|..++.-|| +|....++........+..+--..--++.++|+.+++++..+. .++|++++||+|.|=+.....
T Consensus 35 GR~GR~W~Sp~G~~l~~S~~l~~~~~~~~~~~lsl~~g~av~~al~~~~~~~~iKW-PNDv~~~~kKl~GIL~E~~~~~~ 113 (238)
T COG0340 35 GRRGRKWSSPKGGGLYMSLLLRPDLPPAELPSLSLVAGLAVAEALRKFGIDVRIKW-PNDVLLNGKKLAGILVEAVGDEN 113 (238)
T ss_pred CCCCCcccCCCCCCEEEEEEEcCCcChhhcchhHHHHHHHHHHHHHHhCcccCccC-CcceeECCcceEEEEEeeeecCC
Confidence 488999999998 8888888865543222223333333488999999999999998 799999999999998887553
Q ss_pred ---EEEEeeEEeecCCCCCCCceecCCCCCCceeeechhhcCccccccccCCCChhhhHHHHHHHHHHHHHHhccc
Q 029546 102 ---IAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQL 174 (191)
Q Consensus 102 ---vt~HG~aLNV~~dL~~f~~I~PCGl~~~~vTSl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~~~F~~ 174 (191)
...=|+.+||+.....|..| +...|||.++. .. +++ .++...+.++|.+.+..
T Consensus 114 ~~~~~viGIGINv~~~~~~~~~i------~~~atsL~~~~-~~---------~~r----~~l~~~ll~~l~~~~~~ 169 (238)
T COG0340 114 GLLAVVVGIGINVNNPPPDFEDI------GQPATSLQEEG-EE---------IDR----EELLAKLLKELEKYLRQ 169 (238)
T ss_pred CceEEEEEEEEeeccCCcchhhh------hhhhhhHHhhh-CC---------CCH----HHHHHHHHHHHHHHHHH
Confidence 57889999999998776322 24689999877 32 343 44555666666655544
No 21
>TIGR00121 birA_ligase birA, biotin-[acetyl-CoA-carboxylase] ligase region. The protein name suggests that this enzyme transfers biotin only to acetyl-CoA-carboxylase but it also transfers the biotin moiety to other proteins. The apparent orthologs among the eukaryotes are larger proteins that contain a single copy of this domain.
Probab=98.48 E-value=2.8e-06 Score=72.25 Aligned_cols=128 Identities=16% Similarity=0.101 Sum_probs=86.4
Q ss_pred CcCCceeEeCCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcCCcceecCCCceeEeCCCeEEEecceEeC----
Q 029546 25 ERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEGLTGVWVGDQKLAAIGIRVSQ---- 100 (191)
Q Consensus 25 ~RGG~iTyHgPGQLV~YpIl~L~~~~~~v~~yv~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~KIasiGv~i~~---- 100 (191)
-|.|..++.-||.|.+-.++........+..+--..--++.++|+.++++...+. .++|+++++|||.|=+....
T Consensus 39 GR~gr~W~Sp~g~l~~S~~l~~~~~~~~~~~ls~~~~lAv~~al~~~~~~~~iKW-PNDI~~~~kKi~GIL~E~~~~~~~ 117 (237)
T TIGR00121 39 GRRGRKWLSPEGGLYFSLILRPDLPKSPAPGLTLVAGIAIAEVLKELGDQVQVKW-PNDILLKDKKLGGILTELTGKENR 117 (237)
T ss_pred CCCCCcccCCCCceEEEEEECCCCChhHhhhhHHHHHHHHHHHHHHhCCCCCCcC-CceEEECCeEEEEEEEEcccCCCC
Confidence 4889999999998777777654321111111111122368889998888888888 79999999999999877542
Q ss_pred -cEEEEeeEEeecCCCCCCCceecCCCCCCceeeechhhcCccccccccCCCChhhhHHHHHHHHHHHHHHhcc
Q 029546 101 -WIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQ 173 (191)
Q Consensus 101 -~vt~HG~aLNV~~dL~~f~~I~PCGl~~~~vTSl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~~~F~ 173 (191)
....=|+.+||+.+ .| |..+. ...||+.++.+.. ++ .+++...++++|.+.+.
T Consensus 118 ~~~vviGIGiNv~~~--~~----~~~~~-~~a~sl~~~~~~~---------~~----~~~ll~~l~~~l~~~~~ 171 (237)
T TIGR00121 118 ADYVVIGIGINVQNR--KP----AESLR-EQAISLSEEAGID---------LD----RGELIEGFLRNFEENLE 171 (237)
T ss_pred cCEEEEEEEEccCCC--CC----chhhc-ccceehHHhhCCC---------CC----HHHHHHHHHHHHHHHHH
Confidence 45788999999864 22 44444 3688998876543 34 34555666666666554
No 22
>PTZ00275 biotin-acetyl-CoA-carboxylase ligase; Provisional
Probab=98.38 E-value=8.3e-06 Score=71.71 Aligned_cols=132 Identities=17% Similarity=0.167 Sum_probs=86.7
Q ss_pred CceeEeCCCCeEEEEeeecCCCCCCHHHHHHH-HHHHHHHHHhhcCCcceecCCCceeEeCCCeEEEecceEeC------
Q 029546 28 GEVTYHGPGQLVMYPIINLRNHKMDLHWYLRA-LEEVAIRVLSTFSIKASRVEGLTGVWVGDQKLAAIGIRVSQ------ 100 (191)
Q Consensus 28 G~iTyHgPGQLV~YpIl~L~~~~~~v~~yv~~-Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~KIasiGv~i~~------ 100 (191)
|..++.-||-|.+..++..+........++.. .--++.++|+.++++...++ .++|++++||||.|=+....
T Consensus 72 gR~W~Sp~G~L~~S~~l~~~~~~~~~~~~Lsl~~alAv~~~L~~~~~~~~IKW-PNDI~~~~kKiaGILiE~~~~~~~~~ 150 (285)
T PTZ00275 72 DRIWLSEKGNLFTTFVFLWNRNDIEKVKYLAQTCTVAISKTLEYFHLVTQIKW-INDVLVNYKKIAGCLVHLYYLDDFPN 150 (285)
T ss_pred CCEEECCCCceEEEEEEecCCcCHhHhHHHHHHHHHHHHHHHHHhCCceeEEC-CCccccCCcEEEEEEEeeeecccccc
Confidence 89999999988888887544332221122322 22367899999999988988 79999999999999877541
Q ss_pred -----cEEEEeeEEeecCCCCCCCceecCCCCCCceeeechhhcCccccccccCCCChhhhHHHHHHHHHHHHHHhcc
Q 029546 101 -----WIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQ 173 (191)
Q Consensus 101 -----~vt~HG~aLNV~~dL~~f~~I~PCGl~~~~vTSl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~~~F~ 173 (191)
....=|+.|||+.. +| |..+. ..+|||..+.+...... ...++ .+++...|+++|.+.+.
T Consensus 151 ~~~~~~~vViGIGINvn~~--~~----~~~~~-~~atSL~~~~~~~~~~~--~~~~~----~~~ll~~ll~~l~~~~~ 215 (285)
T PTZ00275 151 LNSRYVCVMVGIGINVTLE--DK----HNLLN-NNYTSIKKELQRDFNTP--KSIPS----VEQVTEKLIINLKAVIN 215 (285)
T ss_pred ccCceeEEEEEEEEecCCC--CC----ccccc-CCcccHHHHhCcccccc--cCCCC----HHHHHHHHHHHHHHHHH
Confidence 35788999999863 22 11222 36799988766432100 01123 35566667777776554
No 23
>PTZ00276 biotin/lipoate protein ligase; Provisional
Probab=98.21 E-value=3.5e-05 Score=66.33 Aligned_cols=90 Identities=11% Similarity=0.036 Sum_probs=65.0
Q ss_pred CcCCceeEeCCCCeEEEEeeecCCCCCCHHHHHHH-HHHHHHHHHhhc--CCcceecCCCceeEeCCCeEEEecceEeCc
Q 029546 25 ERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRA-LEEVAIRVLSTF--SIKASRVEGLTGVWVGDQKLAAIGIRVSQW 101 (191)
Q Consensus 25 ~RGG~iTyHgPGQLV~YpIl~L~~~~~~v~~yv~~-Le~~vi~~L~~~--gi~a~~~~~~~GVwv~~~KIasiGv~i~~~ 101 (191)
-|.|..++.-||-|..-.+++......+....+.. .--++.++|+.+ +++...++ .++|++++||||.|=+.....
T Consensus 46 GR~gR~W~Sp~g~l~~S~~l~~~~~~~~~~~~lsl~~alav~~al~~~~~~~~~~iKW-PNDI~~~~kKiaGILiE~~~~ 124 (245)
T PTZ00276 46 GTGGRTWTSPKGNMYFTLCIPQKGVPPELVPVLPLITGLACRAAIMEVLHGAAVHTKW-PNDIIYAGKKIGGSLIESEGE 124 (245)
T ss_pred CCCCCcccCCCCCeEEEEEECCCccChhHhhHHHHHHHHHHHHHHHHhccCCceEEEc-CCeeEECCcEEEEEEEcccCC
Confidence 48899999999977777777543222221112222 122567788765 78888998 799999999999998876655
Q ss_pred EEEEeeEEeecCCC
Q 029546 102 IAYHGLALNVTTDL 115 (191)
Q Consensus 102 vt~HG~aLNV~~dL 115 (191)
...=|+.+||+.+.
T Consensus 125 ~vvIGIGINv~~~~ 138 (245)
T PTZ00276 125 YLIIGIGMNIEVAP 138 (245)
T ss_pred EEEEEEEEeeCCCC
Confidence 67899999998753
No 24
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional
Probab=98.16 E-value=3.6e-05 Score=68.03 Aligned_cols=126 Identities=17% Similarity=0.198 Sum_probs=82.7
Q ss_pred CcCCceeEeCCCC-eEEEEeeecCCCCCCH--HHHHHHHHHHHHHHHhhcCC-cceecCCCceeEeCCCeEEEecceEeC
Q 029546 25 ERGGEVTYHGPGQ-LVMYPIINLRNHKMDL--HWYLRALEEVAIRVLSTFSI-KASRVEGLTGVWVGDQKLAAIGIRVSQ 100 (191)
Q Consensus 25 ~RGG~iTyHgPGQ-LV~YpIl~L~~~~~~v--~~yv~~Le~~vi~~L~~~gi-~a~~~~~~~GVwv~~~KIasiGv~i~~ 100 (191)
-|.|..++.-||. |.+-.++......... -.++-. -++.++|+.++. +...++ .++|+++++|||.|=+....
T Consensus 116 GR~gr~W~Sp~g~~L~~S~~~~~~~~~~~~~~l~l~~~--~av~~al~~~~~~~~~iKW-PNDI~~~~kKl~GIL~E~~~ 192 (319)
T PRK11886 116 GRRGRQWFSPFGGNLYLSLYWRLNQGPAQAMGLSLVVG--IAIAEALRRLGAIDVGLKW-PNDIYLNDRKLAGILVELSG 192 (319)
T ss_pred CCCCCcccCCCCCCEEEEEEeCCCCChHHHhhHHHHHH--HHHHHHHHHhcCCCcceeC-CceeeECCeeEEEEEEEecc
Confidence 3889999999996 8888887653211111 122323 367888988764 677888 79999999999999877532
Q ss_pred -----cEEEEeeEEeecCCCCCCCceecCCCCCCceeeechhhcCccccccccCCCChhhhHHHHHHHHHHHHHHhcc
Q 029546 101 -----WIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQ 173 (191)
Q Consensus 101 -----~vt~HG~aLNV~~dL~~f~~I~PCGl~~~~vTSl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~~~F~ 173 (191)
....=|+.|||+++- | |..+.....||++++ +. +++ .+++...+.++|.+.+.
T Consensus 193 ~~~~~~~~viGIGiNv~~~~--~----~~~~~~~~~~sl~~~-~~---------~~~----~~~l~~~l~~~~~~~~~ 250 (319)
T PRK11886 193 ETGDAAHVVIGIGINVAMPD--F----PEELIDQPWSDLQEA-GP---------TID----RNQLAAELIKQLRAALE 250 (319)
T ss_pred CCCCccEEEEEEEEccCCCC--C----chhhhccceeeHhhc-CC---------CCC----HHHHHHHHHHHHHHHHH
Confidence 246789999998752 2 222223467888765 32 344 34555566666665543
No 25
>PRK08477 biotin--protein ligase; Provisional
Probab=97.97 E-value=0.00018 Score=60.98 Aligned_cols=89 Identities=15% Similarity=0.100 Sum_probs=64.1
Q ss_pred CcCCceeEeCCCCeEEEEeeecCCCCCCHHH-HHHH-HHHHHHHHHhhcCCcceecCCCceeEeCCCeEEEecceEeCcE
Q 029546 25 ERGGEVTYHGPGQLVMYPIINLRNHKMDLHW-YLRA-LEEVAIRVLSTFSIKASRVEGLTGVWVGDQKLAAIGIRVSQWI 102 (191)
Q Consensus 25 ~RGG~iTyHgPGQLV~YpIl~L~~~~~~v~~-yv~~-Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~KIasiGv~i~~~v 102 (191)
.|.|..++.-||.|..-.+++.......+.. .+.. .--++.++++.++++...++ .++|+++++|||.|=+......
T Consensus 41 GR~gR~W~Sp~G~L~~S~~l~~~~~~~~~~~~~lsl~~~~av~~~l~~~~~~~~iKW-PNDI~~~~kKi~GIL~E~~~~~ 119 (211)
T PRK08477 41 GSRGNSWEGKKGNLFFSFALKESDLPKDLPLQSSSIYFGFLLKEVLKELGSKVWLKW-PNDLYLDDKKIGGVITNKIKNF 119 (211)
T ss_pred CCCCCcccCCCCCeEEEeecCCCcchhhhhhHHHHHHHHHHHHHHHHHhCCCeEEcC-CCeeEECCcEEEEEEEeecCCe
Confidence 3789999999997777666654322111110 1111 12367788888999888888 7999999999999988776556
Q ss_pred EEEeeEEeecCC
Q 029546 103 AYHGLALNVTTD 114 (191)
Q Consensus 103 t~HG~aLNV~~d 114 (191)
..=|+.+||+..
T Consensus 120 vviGiGiNv~~~ 131 (211)
T PRK08477 120 IVCGIGLNLKFS 131 (211)
T ss_pred EEEEEEEeeCCC
Confidence 788999999854
No 26
>PRK06955 biotin--protein ligase; Provisional
Probab=97.70 E-value=0.00084 Score=59.32 Aligned_cols=87 Identities=18% Similarity=0.152 Sum_probs=61.0
Q ss_pred CcCCceeEeCCCC-eEEEEeeecCCCCCC--HHHHHHHHHHHHHHHHhhc----CCcceecCCCceeEeCCCeEEEecce
Q 029546 25 ERGGEVTYHGPGQ-LVMYPIINLRNHKMD--LHWYLRALEEVAIRVLSTF----SIKASRVEGLTGVWVGDQKLAAIGIR 97 (191)
Q Consensus 25 ~RGG~iTyHgPGQ-LV~YpIl~L~~~~~~--v~~yv~~Le~~vi~~L~~~----gi~a~~~~~~~GVwv~~~KIasiGv~ 97 (191)
-|.|..++.-||. |.+-.++........ .-.++-.+ ++.++|+.+ +++...++ .++|+++++|||.|=+.
T Consensus 78 GR~GR~W~Sp~G~~L~~Si~l~~~~~~~~~~~Lsl~~gl--Av~~al~~~~~~~~~~~~iKW-PNDIl~~gkKiaGILiE 154 (300)
T PRK06955 78 GRQGRPWFAQPGNALLFSVACVLPRPVAALAGLSLAVGV--ALAEALAALPAALGQRIALKW-PNDLLIAGRKLAGILIE 154 (300)
T ss_pred CCCcCcccCCCCCcEEEEeEecCCCChHHhhhHHHHHHH--HHHHHHHHhhcccCCceeeeC-CceeeECCcEEEEEEEE
Confidence 4889999999995 776666654321111 11233333 567788765 56788888 79999999999999877
Q ss_pred EeC-----cEEEEeeEEeecCC
Q 029546 98 VSQ-----WIAYHGLALNVTTD 114 (191)
Q Consensus 98 i~~-----~vt~HG~aLNV~~d 114 (191)
... ....=|+.+||+..
T Consensus 155 ~~~~~~~~~~vVIGIGINv~~~ 176 (300)
T PRK06955 155 TVWATPDATAVVIGIGLNVRRA 176 (300)
T ss_pred cccCCCCccEEEEEEEEeeCCC
Confidence 531 34688999999865
No 27
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed
Probab=97.66 E-value=0.00074 Score=65.11 Aligned_cols=88 Identities=22% Similarity=0.191 Sum_probs=63.4
Q ss_pred CcCCceeEeCCCC-eEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcCCcceecCCCceeEeCCCeEEEecceEeC---
Q 029546 25 ERGGEVTYHGPGQ-LVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEGLTGVWVGDQKLAAIGIRVSQ--- 100 (191)
Q Consensus 25 ~RGG~iTyHgPGQ-LV~YpIl~L~~~~~~v~~yv~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~KIasiGv~i~~--- 100 (191)
-|.|..++.-||. |..-.++........+..+--..--++.++|+.+|++...++ .++|++++||||.|=+....
T Consensus 123 GRrGR~W~Sp~G~~Ly~S~~l~~~~~~~~~~~Lsl~vgvAv~~aL~~~g~~v~lKW-PNDIl~~gkKlaGILiE~~~~~~ 201 (592)
T PRK13325 123 GRQGRKWSHRLGECLMFSFGWVFDRPQYELGSLSPVAAVACRRALSRLGLKTQIKW-PNDLVVGRDKLGGILIETVRTGG 201 (592)
T ss_pred CCCCCcccCCCCCcEEEEeeecCCCChhhhhhHHHHHHHHHHHHHHHcCCCceEeC-cceEEECCceEEEEEEeeeecCC
Confidence 4889999999995 877777654321111111111223368899999999988888 79999999999999887752
Q ss_pred -cEEEEeeEEeecC
Q 029546 101 -WIAYHGLALNVTT 113 (191)
Q Consensus 101 -~vt~HG~aLNV~~ 113 (191)
....=|+.|||+.
T Consensus 202 ~~~vVIGIGINv~~ 215 (592)
T PRK13325 202 KTVAVVGIGINFVL 215 (592)
T ss_pred CcEEEEEEEEeeCC
Confidence 1367899999973
No 28
>KOG3159 consensus Lipoate-protein ligase A [Coenzyme transport and metabolism]
Probab=96.24 E-value=0.016 Score=51.97 Aligned_cols=143 Identities=17% Similarity=0.342 Sum_probs=94.9
Q ss_pred CCCCCeEEEcCcCCceeEeCCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHh--hcCCcceecCCCceeEe--CCCe
Q 029546 15 KDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLS--TFSIKASRVEGLTGVWV--GDQK 90 (191)
Q Consensus 15 ~~~gi~v~~~~RGG~iTyHgPGQLV~YpIl~L~~~~~~v~~yv~~Le~~vi~~L~--~~gi~a~~~~~~~GVwv--~~~K 90 (191)
.+.+|++.|..-||+..||+=|-|=.-.+.+=.++.. +..+ ..++++|. ++.+++.... +-++-+ +++|
T Consensus 69 ~e~~I~liRR~SGGGTVyHDlGNLN~S~lt~re~~~r-----~~nl-k~iv~ALn~~e~~v~v~~nq-R~Di~l~~g~rK 141 (336)
T KOG3159|consen 69 RENNIPLIRRFSGGGTVYHDLGNLNYSLLTNREKFDR-----KENL-KIIVRALNGDEPFVKVNLNQ-RDDIVLDFGQRK 141 (336)
T ss_pred HhcCCeEEEEecCCceEEEecCceeEEEEccHHHcCc-----ccch-HHHHHHhccCCceEeecccc-cccceecccCce
Confidence 4679999999999999999999987666654333221 1112 35677777 7777776544 233433 5899
Q ss_pred EEEecceEeCcEEEEeeEEeecCCCCCCCcee---cCCCCCCceeeech-----hhcCccccccccCCCChhhhHHHHHH
Q 029546 91 LAAIGIRVSQWIAYHGLALNVTTDLTPFRWIV---PCGIQNRHVGSIKG-----LLGESQSLTAEFRHPDDCKLIDIAHN 162 (191)
Q Consensus 91 IasiGv~i~~~vt~HG~aLNV~~dL~~f~~I~---PCGl~~~~vTSl~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~ 162 (191)
|..---+|.|.-.||=..+=++.|+..++... +-++......|+.. .+.+. ..+. ....+-
T Consensus 142 iSGtA~kI~r~raYHH~T~L~~aDl~~ls~lL~sp~~~~~s~at~sv~sp~vk~lie~~-------~~v~----~~q~~~ 210 (336)
T KOG3159|consen 142 ISGTAYKIARNRAYHHCTMLLNADLENLSELLKSPRVNIRSKATSSVRSPRVKNLIEKD-------DFVN----VEQSAV 210 (336)
T ss_pred eccchhhhcCCceeeeEEeEeccchHHHHhhccCCCCCccccccccccchhhhhhhhhc-------Cccc----HhHHHH
Confidence 99999999999999888888999999888763 23565555555443 22221 1222 223344
Q ss_pred HHHHHHHHhcccc
Q 029546 163 SLIKEFSEVFQLE 175 (191)
Q Consensus 163 ~l~~~F~~~F~~~ 175 (191)
++.+.+++.|..+
T Consensus 211 av~~~y~~t~~~d 223 (336)
T KOG3159|consen 211 AVQEEYKKTFKED 223 (336)
T ss_pred HHHHHHHHHhccc
Confidence 5667777777765
No 29
>KOG0325 consensus Lipoyltransferase [Energy production and conversion; Coenzyme transport and metabolism]
Probab=95.76 E-value=0.0028 Score=54.31 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=34.7
Q ss_pred cccCCCCCCCCeEEEcCcCCceeEeCCCCeEEEEeeecCCC
Q 029546 9 YLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNH 49 (191)
Q Consensus 9 ~l~~~~~~~gi~v~~~~RGG~iTyHgPGQLV~YpIl~L~~~ 49 (191)
+..+...+..+.++.+.+++.||||| +||.+||.|...++
T Consensus 134 ~tgvwV~d~k~aaiGi~vsr~IT~HG-laLN~~tDL~~fnh 173 (226)
T KOG0325|consen 134 DTGVWVGDAKIAAIGIRVSREITYHG-LALNVNTDLTYFNH 173 (226)
T ss_pred ccceeecCCeeEEEEEEecCcEeecc-eEEEeccCcchhhc
Confidence 66666777789999999999999999 99999999877654
No 30
>PF04017 DUF366: Domain of unknown function (DUF366); InterPro: IPR007162 This is an archaeal family of unknown function.; PDB: 2DDZ_E.
Probab=93.34 E-value=1.2 Score=37.24 Aligned_cols=61 Identities=26% Similarity=0.353 Sum_probs=35.9
Q ss_pred HHHHH--HHHHHHHHHhhcCCcceecCCCceeEeCCCeEEEecceEeCcEEEEeeEEeecCCCCC
Q 029546 55 WYLRA--LEEVAIRVLSTFSIKASRVEGLTGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDLTP 117 (191)
Q Consensus 55 ~yv~~--Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~KIasiGv~i~~~vt~HG~aLNV~~dL~~ 117 (191)
.|.++ |=..+-+.|.++|++..|.. .++|+++||+.-.=.-.+---+.-=+++||+.+=.|
T Consensus 80 ~~~rQRLlv~i~kE~L~~~gv~~~R~G--DDLy~~~~KLSVSIAt~s~vS~kIH~GiNV~~~g~p 142 (183)
T PF04017_consen 80 AYLRQRLLVAIIKEVLEEYGVKLRREG--DDLYVNGRKLSVSIATASPVSTKIHFGINVSSEGTP 142 (183)
T ss_dssp HHHHHHHHHHHHHHHHHTTT--EEEET--TEEEETTEE-EEEEEEEETTEEEEEEEEESS-TT--
T ss_pred HHHHHHHHHHHHHHHHHhcCCceeecc--cceeECCCEEEEEEEecCcchheEEEeEeecccCcc
Confidence 34444 55567788889999988876 599999999532211122222333489999998655
No 31
>KOG1536 consensus Biotin holocarboxylase synthetase/biotin-protein ligase [Coenzyme transport and metabolism]
Probab=90.78 E-value=3.5 Score=40.18 Aligned_cols=132 Identities=19% Similarity=0.240 Sum_probs=82.6
Q ss_pred cCcCCceeEeCCCCeEEEEeee--cCCCCCCHHHHHHHHH-HHHHHHHh---hc-CCcceecCCCceeEeCC-CeEEEec
Q 029546 24 TERGGEVTYHGPGQLVMYPIIN--LRNHKMDLHWYLRALE-EVAIRVLS---TF-SIKASRVEGLTGVWVGD-QKLAAIG 95 (191)
Q Consensus 24 ~~RGG~iTyHgPGQLV~YpIl~--L~~~~~~v~~yv~~Le-~~vi~~L~---~~-gi~a~~~~~~~GVwv~~-~KIasiG 95 (191)
..|||.++.---|-+..-.++. ++.+-..+--|+..+- -++++.+. -| .|+..+++ .+++|+.+ -||+.|=
T Consensus 425 RGRGgN~WlsP~G~~~~sf~ism~~ksr~~~~i~~~~~l~~~~~v~~~~~~pGy~dIpvrIKW-PNDlY~~~~lKvgGiL 503 (649)
T KOG1536|consen 425 RGRGGNVWLSPKGCAMSSFTISMPLKSRVVPLIPFVQHLALVAVVEAVRYAPGYPDIPVRIKW-PNDLYVNGYLKVGGIL 503 (649)
T ss_pred ccCCCCeeecCcceEeEEEEEEeecccccccchHHHHHHHHHHHHHHHhcCCCCCCCceeeec-CccceeeeccccceEE
Confidence 4599999998889888888884 4443344555655543 23344444 23 57888888 79999987 8999886
Q ss_pred ceEe----CcEEEEeeEEeecCCCCCCCceecCCCCCCceeeechhhcCccccccccCCCC-hhhhHHHHHHHHHHHHHH
Q 029546 96 IRVS----QWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPD-DCKLIDIAHNSLIKEFSE 170 (191)
Q Consensus 96 v~i~----~~vt~HG~aLNV~~dL~~f~~I~PCGl~~~~vTSl~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~l~~~F~~ 170 (191)
+... ...-+-|..+||++| ..-|||..++..-.. .+... -+--.+++...+...|++
T Consensus 504 v~st~r~n~f~v~iGCGiNVtN~--------------~PT~cLN~ll~~~n~----e~~~~~l~~k~EkLiA~~~n~fe~ 565 (649)
T KOG1536|consen 504 VTSTYRSNKFNVSIGCGINVTND--------------GPTTCLNDLLDEMNE----ERNLLHLAIKAEKLIAAVFNKFEK 565 (649)
T ss_pred EEeeecCceEEEEEeeeeEecCC--------------CCceeHHHHHHhhch----hhccccchhhHHHHHHHHHHHHHH
Confidence 6543 245566888888887 357777776643211 01100 000135555666677776
Q ss_pred hccc
Q 029546 171 VFQL 174 (191)
Q Consensus 171 ~F~~ 174 (191)
.|+.
T Consensus 566 ~~k~ 569 (649)
T KOG1536|consen 566 YFKL 569 (649)
T ss_pred HHHH
Confidence 6654
No 32
>COG2029 Uncharacterized conserved protein [Function unknown]
Probab=90.67 E-value=3.6 Score=34.33 Aligned_cols=87 Identities=21% Similarity=0.332 Sum_probs=53.9
Q ss_pred HHHHHHHHHhhcCCcceecCCCceeEeCCCeEEEecceEeCcE--EEEeeEEeecCCCCCCCceecCCCCCCceeeechh
Q 029546 60 LEEVAIRVLSTFSIKASRVEGLTGVWVGDQKLAAIGIRVSQWI--AYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGL 137 (191)
Q Consensus 60 Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~KIasiGv~i~~~v--t~HG~aLNV~~dL~~f~~I~PCGl~~~~vTSl~~~ 137 (191)
|-..+.+.|..+|+++.|.. .+.++++||+.- -+.....+ ..| +.+||.+. |.++....+|.++
T Consensus 90 lv~i~~E~l~~~gv~~~ReG--DDly~~grKLtV-sIat~s~vs~kiH-lGiNV~t~----------g~p~V~~igL~dl 155 (189)
T COG2029 90 LVAILKEVLEKLGVDLSREG--DDLYVEGRKLTV-SIATVSPVSSKIH-LGINVKTE----------GVPDVDAIGLEDL 155 (189)
T ss_pred HHHHHHHHHHHhCCcccccC--CceeecCcEEEE-EEEecCCcceeEE-EeEeeecc----------cCCCCCccccccc
Confidence 44556777888999999876 599999999632 22222222 223 67888875 3334555666554
Q ss_pred hcCccccccccCCCChhhhHHHHHHHHHHHHHHh
Q 029546 138 LGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEV 171 (191)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~~~ 171 (191)
... +..+.|+++...+++.+.++
T Consensus 156 g~~-----------Di~~~m~~va~~yv~Eie~i 178 (189)
T COG2029 156 GYG-----------DILEFMERVAVAYVREIEKI 178 (189)
T ss_pred CCC-----------CHHHHHHHHHHHHHHHHHHH
Confidence 421 22345677777777777654
No 33
>PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B.
Probab=65.86 E-value=4.1 Score=23.05 Aligned_cols=11 Identities=45% Similarity=0.987 Sum_probs=9.1
Q ss_pred eeEeCCCCeEE
Q 029546 30 VTYHGPGQLVM 40 (191)
Q Consensus 30 iTyHgPGQLV~ 40 (191)
+|||||++.-+
T Consensus 4 v~y~G~~~v~v 14 (23)
T PF13823_consen 4 VVYHGPKDVRV 14 (23)
T ss_dssp EEEEETTEEEE
T ss_pred eEEeCCCceEE
Confidence 69999998754
No 34
>PRK05761 DNA polymerase I; Reviewed
Probab=39.56 E-value=65 Score=32.56 Aligned_cols=43 Identities=19% Similarity=0.438 Sum_probs=35.8
Q ss_pred CCCCeEEEEeeecC----------CCCCCHHHHHHHHHHHHHHHHhhcCCcce
Q 029546 34 GPGQLVMYPIINLR----------NHKMDLHWYLRALEEVAIRVLSTFSIKAS 76 (191)
Q Consensus 34 gPGQLV~YpIl~L~----------~~~~~v~~yv~~Le~~vi~~L~~~gi~a~ 76 (191)
+||+-|.|.|.+-+ ....|...|+++|..++-++|..||++-.
T Consensus 721 ~~Gd~I~YVi~~~~~~~~p~~~~~~~~iD~~yYi~~l~~~~~~il~~~g~~~~ 773 (787)
T PRK05761 721 SPGDIISYVKVDDKRGVKPVQLAKLSEIDVEKYIELLRSALEQILSALGVSWD 773 (787)
T ss_pred CCCCEEEEEEEcCCCCCChhhhcccCCcCHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 69999999998652 23578899999999999999999998643
No 35
>cd04863 MtLigD_Pol_like MtLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Mycobacterium tuberculosis (Mt)LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. MtLigD is monomeric and contains an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The MtLigD Pol domain is stimulated by manganese, is error-prone, and prefers adding rNTPs to dNTPs in vitro. The MtLigD Pol domain has been shown to prefer DNA gapped substrates
Probab=26.77 E-value=2.2e+02 Score=24.76 Aligned_cols=57 Identities=14% Similarity=0.105 Sum_probs=35.6
Q ss_pred CceeEeCCCCeEE---------EEeeecCCCC-CCHHHHHHHHHHHHHHHHhhcCCcceecC-CCceeE
Q 029546 28 GEVTYHGPGQLVM---------YPIINLRNHK-MDLHWYLRALEEVAIRVLSTFSIKASRVE-GLTGVW 85 (191)
Q Consensus 28 G~iTyHgPGQLV~---------YpIl~L~~~~-~~v~~yv~~Le~~vi~~L~~~gi~a~~~~-~~~GVw 85 (191)
|-+.+|-++.... +-+|||.... .+.. -|...-..+-+.|+++|++++.+- |..|+-
T Consensus 82 g~lE~H~w~~~~~~~~~~e~PD~~vfDLDP~~~~~f~-~v~~~A~~~r~~L~~lgL~s~~KTSG~kGlH 149 (231)
T cd04863 82 AALELHVPQWTVDADGNPGPPDRLVFDLDPGEPAGLV-ECARVALWLRDRLAALGLASFPKTSGSKGLH 149 (231)
T ss_pred CcEEecCCccccCcCCCCCCCCEEEEECCCCCCCCHH-HHHHHHHHHHHHHHHcCCccceECCCCCeEE
Confidence 4566777665532 4588998643 3333 344445567889999999998653 344443
No 36
>cd05531 POLBc_B2 DNA polymerase type-B B2 subfamily catalytic domain. Archaeal proteins that are involved in DNA replication are similar to those from eukaryotes. Some archaeal members also possess multiple family B DNA polymerases (B1, B2 and B3). So far there is no specific function(s) has been assigned for different members of the archaea type B DNA polymerases. Phylogenetic analyses of eubacterial, archaeal, and eukaryotic family B DNA polymerases are support independent gene duplications during the evolution of archaeal and eukaryotic family B DNA polymerases.
Probab=25.36 E-value=1.5e+02 Score=26.98 Aligned_cols=37 Identities=24% Similarity=0.369 Sum_probs=29.8
Q ss_pred CCCCeEEEEeeecC--------CCCCCHHHHHHHHHHHHHHHHhh
Q 029546 34 GPGQLVMYPIINLR--------NHKMDLHWYLRALEEVAIRVLST 70 (191)
Q Consensus 34 gPGQLV~YpIl~L~--------~~~~~v~~yv~~Le~~vi~~L~~ 70 (191)
-||+-|-|.|.+-+ ..+.|..-|++.|+.++.++|..
T Consensus 307 ~~G~~I~Yvi~~~~~~~~~~~~~~~~D~~yYi~~l~~~~~~il~~ 351 (352)
T cd05531 307 VPGMKIEYIVRDGKRPVPDLGNDEGYDTKYYRELLERAAEELLFP 351 (352)
T ss_pred CCCCEEEEEEEECCCCCccccccCCCCHHHHHHHHHHHHHHhccC
Confidence 36899999998654 34678999999999999888764
No 37
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=23.76 E-value=71 Score=29.12 Aligned_cols=53 Identities=19% Similarity=0.245 Sum_probs=36.0
Q ss_pred HHHHHHhhcC--CcceecCCCceeEeCCCeEEEecceEeCcEEEEeeEEeecCCC
Q 029546 63 VAIRVLSTFS--IKASRVEGLTGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDL 115 (191)
Q Consensus 63 ~vi~~L~~~g--i~a~~~~~~~GVwv~~~KIasiGv~i~~~vt~HG~aLNV~~dL 115 (191)
-+-..+..|| ++..+.+..-=|-+.++..|-.-|+==+++|.||+.+||.-.-
T Consensus 18 elr~lFe~ygkVlECDIvKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSk 72 (346)
T KOG0109|consen 18 ELRSLFEQYGKVLECDIVKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASK 72 (346)
T ss_pred HHHHHHHhhCceEeeeeecccceEEeecccccHHHHhhcccceecceEEEEEecc
Confidence 3334455676 3555666433456777777777766567999999999998654
No 38
>COG3052 CitD Citrate lyase, gamma subunit [Energy production and conversion]
Probab=22.97 E-value=98 Score=23.40 Aligned_cols=23 Identities=13% Similarity=0.392 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCcce
Q 029546 54 HWYLRALEEVAIRVLSTFSIKAS 76 (191)
Q Consensus 54 ~~yv~~Le~~vi~~L~~~gi~a~ 76 (191)
++|=+.+|+++.++|+.||+.+.
T Consensus 39 kQFG~~I~~tV~~~La~l~V~~A 61 (98)
T COG3052 39 KQFGDAIRQTVLEVLARLGVRGA 61 (98)
T ss_pred HHHHHHHHHHHHHHHHHhCcccc
Confidence 46889999999999999999754
No 39
>cd05537 POLBc_Pol_II DNA polymerase type-II subfamily catalytic domain. Bacteria contain five DNA polymerases (I, II, III, IV and V). DNA polymerase II (Pol II) is a prototype for the B-family of polymerases. The role of Pol II in a variety of cellular activities, such as repair of DNA damaged by UV irradiation or oxidation has been proven by genetic studies. DNA polymerase III is the main enzyme responsible for replication of the bacterial chromosome; however, In vivo studies have also shown that Pol II is able to participate in chromosomal DNA replication with larger role in lagging-strand replication.
Probab=22.39 E-value=1.8e+02 Score=26.64 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=36.5
Q ss_pred cCcCCceeEeCCCCeEEEEeee-------cCCCCCCHHHHHHH-HHHHHHHHHhhcC
Q 029546 24 TERGGEVTYHGPGQLVMYPIIN-------LRNHKMDLHWYLRA-LEEVAIRVLSTFS 72 (191)
Q Consensus 24 ~~RGG~iTyHgPGQLV~YpIl~-------L~~~~~~v~~yv~~-Le~~vi~~L~~~g 72 (191)
..||..++.-.+|+.|.|.|.. ..+..+|...|++. |.-++.+.|..||
T Consensus 315 ~~~~~~~~~~~~gd~I~YVi~~~g~~~~~~~~~~iD~~yYi~~qi~p~~~ril~~~g 371 (371)
T cd05537 315 DQINRELGRPRQYQWIEYVITVNGPEPLEYRTSPLDYQHYIDKQLKPIADSILPFLG 371 (371)
T ss_pred HhcCCccCCCCCCCEEEEEEecCCcchHhhcCCCCCHHHHHHhccHHHHHHHHHhcC
Confidence 3467777777889999999984 22346788889975 7777788777665
No 40
>TIGR01608 citD citrate lyase acyl carrier protein. This is a model of the acyl carrier protein (aka gamma subunit) of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The acyl carrier protein covalently binds the coenzyme of citrate lyase. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=22.30 E-value=1.1e+02 Score=22.99 Aligned_cols=24 Identities=8% Similarity=0.158 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcce
Q 029546 53 LHWYLRALEEVAIRVLSTFSIKAS 76 (191)
Q Consensus 53 v~~yv~~Le~~vi~~L~~~gi~a~ 76 (191)
.++|=+.+++++-++|+++|++..
T Consensus 38 ~kQfG~~Ir~~v~etL~~lgV~~~ 61 (92)
T TIGR01608 38 KKQFGDDIESTVKETLKLLGVENA 61 (92)
T ss_pred HHHHhHHHHHHHHHHHHHcCCceE
Confidence 567999999999999999999854
No 41
>TIGR02778 ligD_pol DNA polymerase LigD, polymerase domain. DNA repair of double-stranded breaks by non-homologous end joining (NHEJ) is accomplished by a two-protein system that is present in a minority of prokaryotes. One component is the Ku protein (see TIGR02772), which binds DNA ends. The other is a DNA ligase, a protein that is a multidomain polypeptide in most of those bacteria that have NHEJ, a permuted polypeptide in Mycobacterium tuberculosis and a few other species, and the product of tandem genes in some other bacteria. This model represents the polymerase domain.
Probab=20.16 E-value=2.9e+02 Score=24.18 Aligned_cols=57 Identities=12% Similarity=0.203 Sum_probs=34.4
Q ss_pred CceeEeCCCCeE------EEEeeecCCCC-CCHHHHHHHHHHHHHHHHhhcCCcceecC-CCceeE
Q 029546 28 GEVTYHGPGQLV------MYPIINLRNHK-MDLHWYLRALEEVAIRVLSTFSIKASRVE-GLTGVW 85 (191)
Q Consensus 28 G~iTyHgPGQLV------~YpIl~L~~~~-~~v~~yv~~Le~~vi~~L~~~gi~a~~~~-~~~GVw 85 (191)
|-+.+|-++.-+ -+-+|||.... .+.. -+...-..+-+.|+++|++++-+- |..|+-
T Consensus 97 ~~lE~H~w~s~~~~~~~PD~lvfDLDP~~~~~f~-~v~~~A~~~r~~L~~lgL~~f~KTSG~kGlH 161 (245)
T TIGR02778 97 GALEFHIWGARIDAPEKPDRIVFDLDPGPGVAWK-LVVEAAQLIRELLDELGLESFVKTSGGKGLH 161 (245)
T ss_pred CcEEeeCCCCCCCCCCCCCEEEEECCCCCCCCHH-HHHHHHHHHHHHHHHcCCccceEccCCCeEE
Confidence 345556555433 24588998654 3333 344445567889999999998653 334443
Done!