Query 029546
Match_columns 191
No_of_seqs 151 out of 1056
Neff 5.6
Searched_HMMs 29240
Date Tue Mar 26 00:14:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029546.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029546hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w66_A Lipoyltransferase; lipo 100.0 2.9E-51 9.8E-56 347.9 16.9 160 1-178 57-219 (232)
2 2qhs_A Lipoyltransferase; glob 100.0 3.5E-46 1.2E-50 316.5 16.0 166 1-182 67-235 (237)
3 2c8m_A Lipoate-protein ligase 100.0 8.3E-32 2.8E-36 229.9 11.8 168 1-186 47-236 (262)
4 2p5i_A BH3822 protein; PFAM030 100.0 2.4E-31 8.2E-36 230.4 13.8 157 15-186 81-260 (288)
5 2p0l_A Lipoate-protein ligase 100.0 1E-30 3.4E-35 226.7 15.1 146 15-174 78-248 (288)
6 1vqz_A Lipoate-protein ligase, 100.0 6.8E-31 2.3E-35 233.0 12.8 158 1-175 55-224 (341)
7 3a7r_A Lipoate-protein ligase 100.0 8.3E-30 2.8E-34 225.3 7.7 156 1-178 45-217 (337)
8 2e5a_A Lipoyltransferase 1; li 99.9 6E-27 2E-31 207.8 8.7 162 1-176 48-217 (347)
9 2dxu_A Biotin--[acetyl-COA-car 98.6 3.5E-07 1.2E-11 76.9 11.3 121 25-173 47-169 (235)
10 2eay_A Biotin [acetyl-COA-carb 98.6 9.9E-07 3.4E-11 73.8 13.4 125 25-173 39-166 (233)
11 3rkx_A Biotin-[acetyl-COA-carb 98.5 1.7E-06 5.9E-11 75.7 12.9 128 25-173 121-257 (323)
12 3rux_A BIRA bifunctional prote 98.5 1.4E-06 4.7E-11 74.6 11.8 124 25-173 72-203 (270)
13 2ej9_A Putative biotin ligase; 98.4 1.2E-06 4E-11 73.6 10.5 125 25-173 39-168 (237)
14 1bia_A BIRA bifunctional prote 98.2 1.8E-05 6.1E-10 68.8 13.4 125 26-173 118-251 (321)
15 3bfm_A Biotin protein ligase-l 98.0 5.6E-05 1.9E-09 63.0 11.7 122 28-173 38-172 (235)
16 2ddz_A 190AA long hypothetical 90.1 4 0.00014 33.2 10.9 110 38-173 67-181 (190)
17 2iru_A Putative DNA ligase-lik 29.8 97 0.0033 26.7 6.0 58 28-86 109-182 (303)
No 1
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3
Probab=100.00 E-value=2.9e-51 Score=347.86 Aligned_cols=160 Identities=38% Similarity=0.624 Sum_probs=148.9
Q ss_pred CCCCCCcccccCCCCCCCCeEEEcCcCCceeEeCCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcCCcceecCC
Q 029546 1 MGTGGSEEYLNFDLKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRVEG 80 (191)
Q Consensus 1 lGr~~~~~~l~~~~~~~gi~v~~~~RGG~iTyHgPGQLV~YpIl~L~~~~~~v~~yv~~Le~~vi~~L~~~gi~a~~~~~ 80 (191)
+||+++.++++ ..|++|++++|||++|||||||||+|||+||++ +.++++|++.||+++|++|+.|||+|+++++
T Consensus 57 iG~~q~~~~l~----~~gi~Vvr~~rGG~~tYHgPGQlv~Y~Il~l~~-~~~v~~~v~~le~~vI~~L~~~Gi~a~~~~g 131 (232)
T 1w66_A 57 AGRRTETHERP----IDGTPVVDTDRGGKITWHGPGQLVGYPIIGLAE-PLDVVNYVRRLEESLIQVCADLGLHAGRVDG 131 (232)
T ss_dssp ECTTCCGGGSC----TTCCCCEECSSSSSEEEECTTEEEEEEECBBCS-SCCHHHHHHHHHHHHHHHHHHTTCCCEEETT
T ss_pred eCCCCChhhhc----ccCCeEEEecCCCceEEECCCCeEEEEEEECCC-CCCHHHHHHHHHHHHHHHHHHcCCCeEecCC
Confidence 58999998865 458999999999999999999999999999988 8899999999999999999999999999899
Q ss_pred CceeEeC---CCeEEEecceEeCcEEEEeeEEeecCCCCCCCceecCCCCCCceeeechhhcCccccccccCCCChhhhH
Q 029546 81 LTGVWVG---DQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLI 157 (191)
Q Consensus 81 ~~GVwv~---~~KIasiGv~i~~~vt~HG~aLNV~~dL~~f~~I~PCGl~~~~vTSl~~~~~~~~~~~~~~~~~~~~~~~ 157 (191)
.+||||+ ++||||+|+++++|+|+||+||||++||++|..|+|||+.++.||||+++++.. ++ +
T Consensus 132 ~~gV~v~~~~~rKIaaig~r~~~~vt~HG~aLNv~~dL~~f~~I~pcgi~~k~vtSl~~~lg~~---------~~----~ 198 (232)
T 1w66_A 132 RSGVWLPGRPARKVAAIGVRVSRATTLHGFALNCDCDLAAFTAIVPCGISDAAVTSLSAELGRT---------VT----V 198 (232)
T ss_dssp EEEEEECSSSCEEEEEEEEEEETTEEEEEEEEESSCCCGGGGGSCGGGCSSSEECCHHHHHTSC---------CC----H
T ss_pred CCeEEecCCCCCEEEEeeeeeeCCEEEcceEEecCcChHHhcCccccccCCCceeeeHHHhCCC---------CC----H
Confidence 9999999 999999999999999999999999999999999999999999999999877653 34 7
Q ss_pred HHHHHHHHHHHHHhccccccc
Q 029546 158 DIAHNSLIKEFSEVFQLEIHN 178 (191)
Q Consensus 158 ~~v~~~l~~~F~~~F~~~~~~ 178 (191)
+++++.|.++|++.|+.++..
T Consensus 199 ~ev~~~l~~~f~~~~~~~~~~ 219 (232)
T 1w66_A 199 DEVRATVAAAVCAALDGVLPV 219 (232)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-
T ss_pred HHHHHHHHHHHHHHhCccccc
Confidence 899999999999999987654
No 2
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus} PDB: 2qht_A 2qhu_A 2qhv_A
Probab=100.00 E-value=3.5e-46 Score=316.52 Aligned_cols=166 Identities=42% Similarity=0.778 Sum_probs=150.6
Q ss_pred CCCCCCcccccCCC---CCCCCeEEEcCcCCceeEeCCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcCCccee
Q 029546 1 MGTGGSEEYLNFDL---KDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASR 77 (191)
Q Consensus 1 lGr~~~~~~l~~~~---~~~gi~v~~~~RGG~iTyHgPGQLV~YpIl~L~~~~~~v~~yv~~Le~~vi~~L~~~gi~a~~ 77 (191)
+|+.++.+++++++ ++.||+|++++|||++||||||||++|||+++++ ++++|++.||+++|++|+.|||+|.+
T Consensus 67 lG~~q~~~~~~~~~~~l~~~gi~vvrr~rGGgavyH~pGqlv~Y~i~~~~~---~~~~~~~~l~~~ii~~L~~lGi~a~~ 143 (237)
T 2qhs_A 67 LGRKATGENLLFPESWYRENGFELYWVERGGDVTYHGPGQLVGYPIFPVGR---EVRRFLRQIEEAIVRVAAGYGISAYP 143 (237)
T ss_dssp ECTTCCGGGBSSCHHHHHHTTCEEEECCSSSSEEEECTTEEEEEEECCCTT---CHHHHHHHHHHHHHHHHHHTTCCCBC
T ss_pred eCCCCCchhcccCHHHHHhcCCeEEEEcCCCEEEEECCCCEEEEEEEECCc---CHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 58999999887764 4679999999999999999999999999999976 89999999999999999999999999
Q ss_pred cCCCceeEeCCCeEEEecceEeCcEEEEeeEEeecCCCCCCCceecCCCCCCceeeechhhcCccccccccCCCChhhhH
Q 029546 78 VEGLTGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLI 157 (191)
Q Consensus 78 ~~~~~GVwv~~~KIasiGv~i~~~vt~HG~aLNV~~dL~~f~~I~PCGl~~~~vTSl~~~~~~~~~~~~~~~~~~~~~~~ 157 (191)
+++.+||||++||||++|+++++|+++||++|||++||++|..|+|||+.++.||||+++++.. ++ +
T Consensus 144 ~~g~~dv~v~grKIag~g~~~~~~~~~hg~aLnv~~dl~~f~~i~p~g~~~~~vtSl~~~l~~~---------~~----~ 210 (237)
T 2qhs_A 144 TPGYAGVWVGEDKLCAIGVAVKEGVSFHGFALNVNTDLNDFTVIVPCGLKGKGVTSLEKLLGRK---------VP----M 210 (237)
T ss_dssp CSSSSSEEETTEEEEEEEEEEETTEEEEEEEEESSCCGGGGGGBCCCSSCCSEECCHHHHHTSC---------CC----H
T ss_pred eCCCCCEEECCcEEEEEeEEeeCCeEEEeEEEecccChHHhcCcCcCccCCCcEEeHHHhhCCC---------CC----H
Confidence 8889999999999999999999999999999999999999999999999999999999987753 34 7
Q ss_pred HHHHHHHHHHHHHhcccccccCCCc
Q 029546 158 DIAHNSLIKEFSEVFQLEIHNKAIP 182 (191)
Q Consensus 158 ~~v~~~l~~~F~~~F~~~~~~~~~~ 182 (191)
+++++.|.+.|++.|+.++.+.+.+
T Consensus 211 ~ev~~~l~~~f~~~~~~~~~~~~lt 235 (237)
T 2qhs_A 211 EEAKARVVAAFAEVFGLRPVEGSVH 235 (237)
T ss_dssp HHHHHHHHHHHHHHHTCEEC-----
T ss_pred HHHHHHHHHHHHHHhCCccccCCCC
Confidence 8999999999999999987765543
No 3
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A
Probab=99.97 E-value=8.3e-32 Score=229.87 Aligned_cols=168 Identities=21% Similarity=0.337 Sum_probs=129.5
Q ss_pred CCCCCCccccc-CC-CCCCCCeEEEcCcCCceeEeCCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcCC-----
Q 029546 1 MGTGGSEEYLN-FD-LKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSI----- 73 (191)
Q Consensus 1 lGr~~~~~~l~-~~-~~~~gi~v~~~~RGG~iTyHgPGQLV~YpIl~L~~~~~~v~~yv~~Le~~vi~~L~~~gi----- 73 (191)
+|+.+++.+.. .+ +.+.|++|++++|||++|||||||| .|+++..+. ..++++.++.+++.++++|+.|||
T Consensus 47 lG~~q~~~~e~~~~~~~~~gi~vvrR~sGGgavyhd~G~l-~ys~i~~~~-~~~~~~~y~~l~~~ii~~l~~lGi~~~~~ 124 (262)
T 2c8m_A 47 IGYFQVAEEEVDLDYMKKNGIMLARRYTGGGAVYHDLGDL-NFSVVRSSD-DMDITSMFRTMNEAVVNSLRILGLDARPG 124 (262)
T ss_dssp ECTTCCHHHHSCHHHHHHTTCEEEECSSCSCCEEECTTEE-EEEEEEECS-SCCHHHHHHHHHHHHHHHHHHTTCCCEEC
T ss_pred ECCCCChhHHhHHHHHHhcCCcEEEECCCCceEEeCCCcE-EEEEEEcCC-CCCHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 57777765432 11 2467999999999999999999998 777774333 358886668899999999999999
Q ss_pred -----cceecCCCceeEeCCCeEEEecceEeCcEEEEeeEEeecCCCCCCCc---eecCCCCCCc-------eeeechhh
Q 029546 74 -----KASRVEGLTGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDLTPFRW---IVPCGIQNRH-------VGSIKGLL 138 (191)
Q Consensus 74 -----~a~~~~~~~GVwv~~~KIasiGv~i~~~vt~HG~aLNV~~dL~~f~~---I~PCGl~~~~-------vTSl~~~~ 138 (191)
.++.. +.+|||++++|||++|.+++++.++||.+||+++|++.|.. +.|||+.++. ||||++++
T Consensus 125 ~~~~~~a~~~-g~~dv~v~g~Ki~G~aqr~~~~~~lhhgtllv~~d~~~~~~~l~~~~~~~~~~g~~s~~~~vtsL~~~~ 203 (262)
T 2c8m_A 125 ELNDVSIPVN-KKTDIMAGEKKIMGAAGAMRKGAKLWHAAMLVHTDLDMLSAVLKVPDEKFRDKIAKSTRERVANVTDFV 203 (262)
T ss_dssp CBCCTTSSSS-BTTSEEETTEEEEEEEEEEETTEEEEEEEEESSCCHHHHHHHTC---------------CCBCCGGGTS
T ss_pred cccCCcceEC-CcCcEEECCeEEEEeeeEEeCCEEEEEEEEEecCCHHHHHHHhCCChhhhhhhccccHHhhhccHHHhc
Confidence 66654 68999999999999999999999999999999999998753 4589998887 89998877
Q ss_pred cCccccccccCCCChhhhHHHHHHHHHHHHHHhcccccccCCCchhhh
Q 029546 139 GESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLEIHNKAIPLSEH 186 (191)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~~~F~~~~~~~~~~~~~~ 186 (191)
. ++ ++++.+.|.+.|.+.|+.++.....+.+|+
T Consensus 204 -~----------~~----~~~v~~~l~~~~~~~~~~~~~~~~lt~~e~ 236 (262)
T 2c8m_A 204 -D----------VS----IDEVRNALIRGFSETLHIDFREDTITEKEE 236 (262)
T ss_dssp -C----------CC----HHHHHHHHHHHHHHHHTCEEEECCCCHHHH
T ss_pred -C----------CC----HHHHHHHHHHHHHHHhCCCceecCCCHHHH
Confidence 2 22 688999999999999998776666655554
No 4
>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} SCOP: d.104.1.3
Probab=99.97 E-value=2.4e-31 Score=230.39 Aligned_cols=157 Identities=13% Similarity=0.115 Sum_probs=132.4
Q ss_pred CCCCCeEEEcCcCCceeEeCCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcCCccee-------cCCCceeEeC
Q 029546 15 KDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASR-------VEGLTGVWVG 87 (191)
Q Consensus 15 ~~~gi~v~~~~RGG~iTyHgPGQLV~YpIl~L~~~~~~v~~yv~~Le~~vi~~L~~~gi~a~~-------~~~~~GVwv~ 87 (191)
++.||+|++++|||++|||||||| .|+++..++.+.+++++++.+++.++++|+.|||++.+ .++.+||||+
T Consensus 81 ~~~gi~vvRR~sGGgaVyHdpG~l-~ysli~~~~~~~~v~~~y~~l~~~ii~~L~~lGi~a~~~~~~~~~c~g~~dl~v~ 159 (288)
T 2p5i_A 81 KGFQHDVIVRNSGGLAVVLDSGIL-NLSLVLKEEKGFSIDDGYELMYELICSMFQDHREQIEAREIVGSYCPGSYDLSID 159 (288)
T ss_dssp HHTTCEEEEESSCCCCEEECTTEE-EEEEEEECCTTCCHHHHHHHHHHHHHHHTC---CCCEECCCTTSSSCCTTCEEET
T ss_pred HHcCCeEEEEcCCCceEEECCCcE-EEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHcCCcEEEeccccCCCCCCccEEEC
Confidence 457999999999999999999985 99999777667799999999999999999999999887 4789999999
Q ss_pred CCeEEEecceEeCcEEEEeeEEeecCCCCC--------CCce-ec-------CCCCCCceeeechhhcCccccccccCCC
Q 029546 88 DQKLAAIGIRVSQWIAYHGLALNVTTDLTP--------FRWI-VP-------CGIQNRHVGSIKGLLGESQSLTAEFRHP 151 (191)
Q Consensus 88 ~~KIasiGv~i~~~vt~HG~aLNV~~dL~~--------f~~I-~P-------CGl~~~~vTSl~~~~~~~~~~~~~~~~~ 151 (191)
++|||++|.++++|.++||++|||++|++. |+.+ .| ||+.+.+||||+++++.. +
T Consensus 160 grKI~G~Aqr~~~~~~lhh~~l~v~~dl~~~~~~l~~f~~~~l~~~~~ki~~~gi~~~~VtsL~~~l~~~---------~ 230 (288)
T 2p5i_A 160 GKKFAGISQRRIRGGVAVQIYLCVSGSGAERAKMIRTFYDKAVAGQPTKFVYPRIKPETMASLSELLGQP---------H 230 (288)
T ss_dssp TEEEEEEEEEEETTEEEEEEEEECSSCHHHHHHHHHHHHHHHHTTSCCSSCCCCCCGGGBCCHHHHHTSC---------C
T ss_pred CEEEEEEEEEEeCCEEEEEEEEEecCCHHHHHHHHHHHHHHhhcCccccccccccchhhceeHHHHcCCC---------C
Confidence 999999999999999999999999999988 7763 44 599889999999988753 3
Q ss_pred ChhhhHHHHHHHHHHHHHHhcccccccCCCchhhh
Q 029546 152 DDCKLIDIAHNSLIKEFSEVFQLEIHNKAIPLSEH 186 (191)
Q Consensus 152 ~~~~~~~~v~~~l~~~F~~~F~~~~~~~~~~~~~~ 186 (191)
+ ++++.+.|.+.|++. +.++.+...+.+|.
T Consensus 231 ~----~~~v~~~l~~~f~~~-~~~~~~~~lt~~e~ 260 (288)
T 2p5i_A 231 N----VSDVLLKALMTLQQH-GASLLTESLSADEW 260 (288)
T ss_dssp C----HHHHHHHHHHHHHHT-TCCCEECCCCHHHH
T ss_pred C----HHHHHHHHHHHHHHh-CCCceecCCCHHHH
Confidence 3 688999999999985 44555555555444
No 5
>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, 10425H, structural genomics, structure initiative, PSI-2; 2.04A {Streptococcus agalactiae} SCOP: d.104.1.3
Probab=99.97 E-value=1e-30 Score=226.68 Aligned_cols=146 Identities=11% Similarity=0.100 Sum_probs=129.4
Q ss_pred CCCCCeEEEcCcCCceeEeCCCCeEEEEee-ecC-CCCCCHHHHHHHHHHHHHHHHhhcCCccee-------cCCCceeE
Q 029546 15 KDPPFQVYRTERGGEVTYHGPGQLVMYPII-NLR-NHKMDLHWYLRALEEVAIRVLSTFSIKASR-------VEGLTGVW 85 (191)
Q Consensus 15 ~~~gi~v~~~~RGG~iTyHgPGQLV~YpIl-~L~-~~~~~v~~yv~~Le~~vi~~L~~~gi~a~~-------~~~~~GVw 85 (191)
++.||+|++++|||++||||||| +.|+++ +.+ ..+.+++++++.+++.++++|+.|||++.+ .++.+|||
T Consensus 78 ~~~gi~vvRR~sGGgaVyHdpG~-l~ysli~~~~~~~~~~i~~~y~~l~~~ii~aL~~lGi~a~~~~~~~~~c~g~~Dl~ 156 (288)
T 2p0l_A 78 ISRGYEPVVRNFGGLAVVADEGI-LNFSLVIPDVFERKLSISDGYLIMVDFIRSIFSDFYQPIEHFEVETSYCPGKFDLS 156 (288)
T ss_dssp HTTTCEEEECTTCCSCEEESTTE-EEEEEEEESCC---CCHHHHHHHHHHHHHHHTTTSCSCCEECCCTTSSSCCTTCEE
T ss_pred HHCCCEEEEEcCCCCeEEECCCc-EEEEEEEcCccccCCCHHHHHHHHHHHHHHHHHHcCCcEEEccccCCCCCCCccEE
Confidence 46799999999999999999997 688888 766 456799999999999999999999999887 48899999
Q ss_pred eCCCeEEEecceEeCcEEEEeeEEeecCCCCC--------CCce--------ecCCCCCCceeeechhhcCccccccccC
Q 029546 86 VGDQKLAAIGIRVSQWIAYHGLALNVTTDLTP--------FRWI--------VPCGIQNRHVGSIKGLLGESQSLTAEFR 149 (191)
Q Consensus 86 v~~~KIasiGv~i~~~vt~HG~aLNV~~dL~~--------f~~I--------~PCGl~~~~vTSl~~~~~~~~~~~~~~~ 149 (191)
|+++|||++|.++++|.++||++|||++|++. |..+ .+||+.+.+||||+++++..
T Consensus 157 v~grKI~G~Aqr~~~~~~lhh~sl~v~~dl~~~~~~l~~~~~~~l~~~~~k~~~~gi~~~~VtsL~~~l~~~-------- 228 (288)
T 2p0l_A 157 INGKKFAGLAQRRIKNGIAVSIYLSVCGDQKGRSQMISDFYKIGLGDTGSPIAYPNVDPEIMANLSDLLDCP-------- 228 (288)
T ss_dssp ETTEEEEEEEEEEETTEEEEEEEEECSSCHHHHHHHHHHHHHHHHTTTCCSSCCCCCCTTSBCCHHHHTTCC--------
T ss_pred ECCEEEEEEeEEEeCCEEEEEEEEEecCCHHHHHHHHHHHHHHhcCCccccccccccchhheeeHHHHcCCC--------
Confidence 99999999999999999999999999999987 7665 45899999999999988753
Q ss_pred CCChhhhHHHHHHHHHHHHHHhccc
Q 029546 150 HPDDCKLIDIAHNSLIKEFSEVFQL 174 (191)
Q Consensus 150 ~~~~~~~~~~v~~~l~~~F~~~F~~ 174 (191)
++ ++++.+.|.+.|.+.|+.
T Consensus 229 -~~----~~~v~~~l~~~f~~~~~~ 248 (288)
T 2p0l_A 229 -MT----VEDVIDRMLISLKQVGFN 248 (288)
T ss_dssp -CC----HHHHHHHHHHHHHHHTCC
T ss_pred -CC----HHHHHHHHHHHHHHhcCC
Confidence 33 688999999999999987
No 6
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3
Probab=99.97 E-value=6.8e-31 Score=233.04 Aligned_cols=158 Identities=16% Similarity=0.201 Sum_probs=134.1
Q ss_pred CCCCCCcccccC-C-CCCCCCeEEEcCcCCceeEeCCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcCCcceec
Q 029546 1 MGTGGSEEYLNF-D-LKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASRV 78 (191)
Q Consensus 1 lGr~~~~~~l~~-~-~~~~gi~v~~~~RGG~iTyHgPGQLV~YpIl~L~~~~~~v~~yv~~Le~~vi~~L~~~gi~a~~~ 78 (191)
+|+.+++.+..- + +++.|++|++++|||++|||||||| .|++++++....++ + ++.+++.++++|+.|||+|...
T Consensus 55 iG~~q~~~~ev~~~~~~~~gi~vvRR~sGGgaVyHd~G~l-~ys~i~~~~~~~~~-~-y~~l~~~ii~aL~~lGi~a~~~ 131 (341)
T 1vqz_A 55 VGRHQNTIEEINRDYVRENGIEVVRRISGGGAVYHDLNNL-NYTIISKEDENKAF-D-FKSFSTPVINTLAQLGVKAEFT 131 (341)
T ss_dssp ECTTCCGGGTBCHHHHHHHTCEEEECSSCSCCEEECTTEE-EEEEEEECCTTCCC-S-HHHHHHHHHHHHHHTTCCEEEE
T ss_pred ECCCCChhhhhCHHHHHHcCCcEEEECCCCCeEEECCCce-EEEEEEcCcccCCc-c-HHHHHHHHHHHHHHcCCeEEEC
Confidence 578777655321 1 2457999999999999999999995 99999887654355 5 4789999999999999999875
Q ss_pred CCCceeEeCCCeEEEecceEeCcEEEEeeEEeecCCCCCCC---ceecCCCCCCc-------eeeechhhcCcccccccc
Q 029546 79 EGLTGVWVGDQKLAAIGIRVSQWIAYHGLALNVTTDLTPFR---WIVPCGIQNRH-------VGSIKGLLGESQSLTAEF 148 (191)
Q Consensus 79 ~~~~GVwv~~~KIasiGv~i~~~vt~HG~aLNV~~dL~~f~---~I~PCGl~~~~-------vTSl~~~~~~~~~~~~~~ 148 (191)
+.+||||+++|||++|.+++++.++||.+||+++|++.|. .+.|||+.++. ||||+++++..
T Consensus 132 -gr~Di~v~grKIsG~Aqr~~~~~~lhhgtllvd~Dl~~~~~~L~~~~~k~~~kgv~s~~~~VtsL~~~l~~~------- 203 (341)
T 1vqz_A 132 -GRNDLEIDGKKFCGNAQAYINGRIMHHGCLLFDVDLSVLANALKVSKDKFESKGVKSVRARVTNIINELPKK------- 203 (341)
T ss_dssp -TTTEEEETTEEEEEEEEEEETTEEEEEEEEESSCCTTHHHHHBCCCSSCCEECSCCCCCCCBCCGGGTCSSC-------
T ss_pred -CCCCEEEeCEEEEEEEEEEECCEEEEEEEEEecCCHHHHHHHhCCCccchhhcccccchhhheeHHHhcCCC-------
Confidence 5899999999999999999999999999999999999987 55699998765 89999887642
Q ss_pred CCCChhhhHHHHHHHHHHHHHHhcccc
Q 029546 149 RHPDDCKLIDIAHNSLIKEFSEVFQLE 175 (191)
Q Consensus 149 ~~~~~~~~~~~v~~~l~~~F~~~F~~~ 175 (191)
++ ++++.++|.+.|.+.|+..
T Consensus 204 --~~----~~~v~~~l~~~f~~~~~~~ 224 (341)
T 1vqz_A 204 --IT----VEKFRDLLLEYMKKEYPEM 224 (341)
T ss_dssp --CC----HHHHHHHHHHHHHHHCTTC
T ss_pred --CC----HHHHHHHHHHHHHHhcCCC
Confidence 34 7899999999999999876
No 7
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A*
Probab=99.96 E-value=8.3e-30 Score=225.34 Aligned_cols=156 Identities=13% Similarity=0.222 Sum_probs=129.2
Q ss_pred CCCCCCcccccCC---CCCCCCeEEEcCcCCceeEeCCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcCCccee
Q 029546 1 MGTGGSEEYLNFD---LKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFSIKASR 77 (191)
Q Consensus 1 lGr~~~~~~l~~~---~~~~gi~v~~~~RGG~iTyHgPGQLV~YpIl~L~~~~~~v~~yv~~Le~~vi~~L~~~gi~a~~ 77 (191)
+|+.+++.+.. + +++.|++|++++|||++|||||||| .|++++++.. .+ | +.+++.++++|+.|||+|..
T Consensus 45 iG~~q~~~~e~-~~~~~~~~gi~vvRR~sGGgaVyHd~G~l-~ys~i~~~~~-~~---y-~~l~~~ii~~L~~lGi~a~~ 117 (337)
T 3a7r_A 45 IGRAQNPWKEC-NTRRMEEDNVRLARRSSGGGAVFHDLGNT-CFTFMAGKPE-YD---K-TISTSIVLNALNALGVSAEA 117 (337)
T ss_dssp ECTTCCHHHHS-CHHHHHHTTCEEEECSSCSCCEEECTTEE-EEEEEEETTT-CC---H-HHHHHHHHHHHHHTTCCEEE
T ss_pred ECCCCChhHhh-CHHHHHHcCCeEEEEcCCCccEEECCCcE-EEEEEECCcc-cC---H-HHHHHHHHHHHHHcCCeEEE
Confidence 57777764332 3 2467999999999999999999999 9999988764 23 5 67999999999999999987
Q ss_pred cCCCceeEe---CC-CeEEEecceEeCcEEEEeeEEeecCCCCC---CCceecCCCCCCce-------eeechhhcCccc
Q 029546 78 VEGLTGVWV---GD-QKLAAIGIRVSQWIAYHGLALNVTTDLTP---FRWIVPCGIQNRHV-------GSIKGLLGESQS 143 (191)
Q Consensus 78 ~~~~~GVwv---~~-~KIasiGv~i~~~vt~HG~aLNV~~dL~~---f~~I~PCGl~~~~v-------TSl~~~~~~~~~ 143 (191)
. +.+|||| ++ +|||++|.+++++.++||.+||+++|++. |-.+.|||+.++.+ |||+++++.
T Consensus 118 ~-g~~di~v~~~~g~rKIsG~Aqr~~~~~~lhhgtll~~~dl~~l~~~l~~~~~~~~~kgv~sv~~~vt~L~~~~~~--- 193 (337)
T 3a7r_A 118 S-GRNDLVVKTVEGDRKVSGSAYRETKDRGFHHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLPG--- 193 (337)
T ss_dssp E-TTTEEEECCTTSCEEEEEEEEEECSSEEEEEEEEESSCCHHHHHHHTSCCCCEEEECSCCCCCCCBCCGGGTCTT---
T ss_pred C-CCCcEEEEeCCCceEEEEEEEEEECCEEEEEEEEEecCCHHHHHHHhcCChhhhhhcCCCchhhheeEHHHhCCC---
Confidence 6 4899999 88 99999999999999999999999999875 44678999987665 566555442
Q ss_pred cccccCCCChhhhHHHHHHHHHHHHHHhccccccc
Q 029546 144 LTAEFRHPDDCKLIDIAHNSLIKEFSEVFQLEIHN 178 (191)
Q Consensus 144 ~~~~~~~~~~~~~~~~v~~~l~~~F~~~F~~~~~~ 178 (191)
++ ++++.+.|.+.|.+.|+.++.+
T Consensus 194 -------~~----~~~v~~~l~~~f~~~~~~~~~~ 217 (337)
T 3a7r_A 194 -------IT----HEQVCEAITEAFFAHYGERVEA 217 (337)
T ss_dssp -------CC----HHHHHHHHHHHHHHHHTCCCCC
T ss_pred -------CC----HHHHHHHHHHHHHHHcCCCCce
Confidence 33 7899999999999999976543
No 8
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A
Probab=99.93 E-value=6e-27 Score=207.77 Aligned_cols=162 Identities=15% Similarity=0.215 Sum_probs=127.3
Q ss_pred CCCCCCccccc-CC-CCCCCCeEEEcCcCCceeEeCCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhcC--Ccce
Q 029546 1 MGTGGSEEYLN-FD-LKDPPFQVYRTERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTFS--IKAS 76 (191)
Q Consensus 1 lGr~~~~~~l~-~~-~~~~gi~v~~~~RGG~iTyHgPGQLV~YpIl~L~~~~~~v~~yv~~Le~~vi~~L~~~g--i~a~ 76 (191)
+|+.+++.+.. .+ +++.||+|++++|||++||||||| +.|++++.+.. .+ | ..+++.++++|+.+| |+|+
T Consensus 48 iG~~q~~~~e~~~~~~~~~gi~vvRR~sGGgaVyHd~G~-l~ys~i~~~~~-~~---~-~~~~~~ii~~L~~lG~~i~a~ 121 (347)
T 2e5a_A 48 IGRHQNPWQECNLNLMREEGVKLARRRSGGGTVYHDMGN-INLTFFTTKKK-YD---R-MENLKLVVRALKAVHPHLDVQ 121 (347)
T ss_dssp ECTTCCHHHHSCHHHHHTTTCEEEECSSCSCCEEECTTE-EEEEEEECGGG-CC---H-HHHHHHHHHHHHHHSTTCCEE
T ss_pred ECCCCCchhhhCHHHHHHCCCeEEEECCCCCcEEECCCc-EEEEEEecccc-CC---H-HHHHHHHHHHHHHhCCceEEE
Confidence 47777655332 11 346799999999999999999999 89999987643 33 3 357899999999999 9998
Q ss_pred ecCCCceeEeCC-CeEEEecceEeCcEEEEeeEEeecCCCCC---CCceecCCCCCCceeeechhhcCccccccccCCCC
Q 029546 77 RVEGLTGVWVGD-QKLAAIGIRVSQWIAYHGLALNVTTDLTP---FRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPD 152 (191)
Q Consensus 77 ~~~~~~GVwv~~-~KIasiGv~i~~~vt~HG~aLNV~~dL~~---f~~I~PCGl~~~~vTSl~~~~~~~~~~~~~~~~~~ 152 (191)
.. +.+||||++ +|||+++.+++++.++|+.+||+++|++. |-.+.|||+.++.++|+.+....... ..+.++
T Consensus 122 ~~-g~~di~v~g~~KIsG~Aq~~~~~~~lhhgtll~~~d~~~l~~~l~~~~~~~~~kgv~Sv~~~v~~L~~---~~~~~~ 197 (347)
T 2e5a_A 122 AT-KRFDLLLDGQFKISGTASKIGRNAAYHHCTLLCGTDGTFLSSLLKSPYQGIRSNATASTPALVKNLME---KDPTLT 197 (347)
T ss_dssp EC-TTSCEEETTTEEEECEEEEECSSCEEEEEEEESSCCHHHHHHHTSCCCCSEEECSCCCCCCCBCCHHH---HCTTCC
T ss_pred EC-CCCcEEECCCcEEEEEeEEeeCCeEEEEEEEEEecCHHHHHHHHccCchhhhhhcccchHHhhccHHH---hCCCCC
Confidence 76 589999998 99999999999999999999999999754 55667999998888877643321100 001244
Q ss_pred hhhhHHHHHHHHHHHHHHhccccc
Q 029546 153 DCKLIDIAHNSLIKEFSEVFQLEI 176 (191)
Q Consensus 153 ~~~~~~~v~~~l~~~F~~~F~~~~ 176 (191)
++++.+.|.+.|.+.|+.++
T Consensus 198 ----~~~v~~~l~~~f~~~~~~~~ 217 (347)
T 2e5a_A 198 ----CEVVINAVATEYATSHQIDN 217 (347)
T ss_dssp ----HHHHHHHHHHHHHHHHTCCC
T ss_pred ----HHHHHHHHHHHHHHHhCCCC
Confidence 78899999999999998653
No 9
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=98.60 E-value=3.5e-07 Score=76.88 Aligned_cols=121 Identities=20% Similarity=0.150 Sum_probs=87.7
Q ss_pred CcCCceeEeCCCCeEEEEeeecCCCCC--CHHHHHHHHHHHHHHHHhhcCCcceecCCCceeEeCCCeEEEecceEeCcE
Q 029546 25 ERGGEVTYHGPGQLVMYPIINLRNHKM--DLHWYLRALEEVAIRVLSTFSIKASRVEGLTGVWVGDQKLAAIGIRVSQWI 102 (191)
Q Consensus 25 ~RGG~iTyHgPGQLV~YpIl~L~~~~~--~v~~yv~~Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~KIasiGv~i~~~v 102 (191)
-|.|..++--||.|.+-.++....... ..-.++-.+ ++.++|+.++++...++ .++|+++++|||.|-+......
T Consensus 47 GR~Gr~W~Sp~G~l~~S~~l~p~~~~~~~~~l~l~~al--Av~~al~~~~~~~~iKW-PNDi~~~gkKl~GIL~E~~~~~ 123 (235)
T 2dxu_A 47 GALNRKWESPEGGLWLSIVLSPKVPQKDLPKIVFLGAV--GVVETLKEFSIDGRIKW-PNDVLVNYKKIAGVLVEGKGDK 123 (235)
T ss_dssp CGGGCBCCCCTTSEEEEEEECCCSCGGGGGGHHHHHHH--HHHHHHHHTTCCCEEET-TTEEEETTEEEEEEEEEECSSC
T ss_pred CCCcCcccCCCCCeEEEEEeecCCCHHHHHHHHHHHHH--HHHHHHHHhCCCeeeeC-CCEEEECCEEEEEEEEeecCCE
Confidence 377889888899888888875432211 122344444 78999998899999998 7999999999999998886566
Q ss_pred EEEeeEEeecCCCCCCCceecCCCCCCceeeechhhcCccccccccCCCChhhhHHHHHHHHHHHHHHhcc
Q 029546 103 AYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQ 173 (191)
Q Consensus 103 t~HG~aLNV~~dL~~f~~I~PCGl~~~~vTSl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~~~F~ 173 (191)
..=|+.|||+++ | |- . .|||..+.+.. +++ +++...++++|.+.+.
T Consensus 124 vViGiGiNv~~~---~----p~----~-atsL~~~~~~~---------~~r----~~ll~~ll~~l~~~~~ 169 (235)
T 2dxu_A 124 IVLGIGLNVNNK---V----PN----G-ATSMKLELGSE---------VPL----LSVFRSLITNLDRLYL 169 (235)
T ss_dssp EEEEEEECSSSC---C----CT----T-BCCHHHHHTSC---------CCH----HHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEeCCC---C----CC----c-hhhHHHhhCCC---------CCH----HHHHHHHHHHHHHHHH
Confidence 788999999986 1 21 1 89998877643 343 4555666666666553
No 10
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=98.57 E-value=9.9e-07 Score=73.85 Aligned_cols=125 Identities=18% Similarity=0.146 Sum_probs=81.2
Q ss_pred CcCCceeEeCCCCeEEEEeeecCCCCC--CHHHHHHHHHHHHHHHHhhc-CCcceecCCCceeEeCCCeEEEecceEeCc
Q 029546 25 ERGGEVTYHGPGQLVMYPIINLRNHKM--DLHWYLRALEEVAIRVLSTF-SIKASRVEGLTGVWVGDQKLAAIGIRVSQW 101 (191)
Q Consensus 25 ~RGG~iTyHgPGQLV~YpIl~L~~~~~--~v~~yv~~Le~~vi~~L~~~-gi~a~~~~~~~GVwv~~~KIasiGv~i~~~ 101 (191)
-|.|..++--||.|.+-.++... ... ..-.++-.+ ++.++|+.+ +++...++ .++|+++++|||.|-+.....
T Consensus 39 GR~Gr~W~Sp~G~l~~S~~l~p~-~~~~~~~lsl~~~l--Av~~al~~~~~~~~~iKW-PNDI~~~gkKl~GIL~E~~~~ 114 (233)
T 2eay_A 39 GRLGRKWLSQEGGLYFSFLLNPK-EFENLLQLPLVLGL--SVSEALEEITEIPFSLKW-PNDVYFQEKKVSGVLCELSKD 114 (233)
T ss_dssp ----------CCEEEEEEEECTT-TCCCTTHHHHHHHH--HHHHHHHHHHCCCCEEET-TTEEEETTEEEEEEEEEEETT
T ss_pred CCCCCeeeCCCCCcEEEEEEcCC-CHHHHHHHHHHHHH--HHHHHHHHhcCCCccEeC-cceEEECCeEEEEEEEEeecC
Confidence 38899999999988777777554 222 233444444 788999975 99999998 799999999999999888655
Q ss_pred EEEEeeEEeecCCCCCCCceecCCCCCCceeeechhhcCccccccccCCCChhhhHHHHHHHHHHHHHHhcc
Q 029546 102 IAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQ 173 (191)
Q Consensus 102 vt~HG~aLNV~~dL~~f~~I~PCGl~~~~vTSl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~~~F~ 173 (191)
...=|+.|||+.+ .| |-.+. ...|||..+.+.. ++ .+++...++++|.+.+.
T Consensus 115 ~~ViGIGiNv~~~--~~----p~~~~-~~atsL~~~~~~~---------~~----r~~ll~~ll~~l~~~~~ 166 (233)
T 2eay_A 115 KLIVGIGINVNQR--EI----PEEIK-DRATTLYEITGKD---------WD----RKEVLLKVLKRISENLK 166 (233)
T ss_dssp EEEEEEEEECSCC--CC----CTTTT-TTBCCHHHHHSSC---------CC----HHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEcccc--cC----cchhh-hhhhhhHHhHCCC---------CC----HHHHHHHHHHHHHHHHH
Confidence 4488999999972 22 33333 3689998876643 34 34555666777766654
No 11
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=98.48 E-value=1.7e-06 Score=75.73 Aligned_cols=128 Identities=15% Similarity=0.106 Sum_probs=81.0
Q ss_pred CcCCceeEeCCC-CeEEEEeeecCCCCCCH--HHHHHHHHHHHHHHHhhc-CCcceecCCCceeEeCCCeEEEecceEeC
Q 029546 25 ERGGEVTYHGPG-QLVMYPIINLRNHKMDL--HWYLRALEEVAIRVLSTF-SIKASRVEGLTGVWVGDQKLAAIGIRVSQ 100 (191)
Q Consensus 25 ~RGG~iTyHgPG-QLV~YpIl~L~~~~~~v--~~yv~~Le~~vi~~L~~~-gi~a~~~~~~~GVwv~~~KIasiGv~i~~ 100 (191)
-|.|..++--|| .|.+-.++......... -.++-.+ ++.++|+.+ +++...++ .++|+++++|||.|=+....
T Consensus 121 GR~GR~W~Sp~G~~L~~S~~l~p~~~~~~~~~lsl~~av--Av~~al~~~~~~~~~iKW-PNDI~~~gkKl~GIL~E~~~ 197 (323)
T 3rkx_A 121 GRFNRHWSSSKGQGLWMSVVLRPNVAFSMISKFNLFIAL--GIRDAIQHFSQDEVKVKW-PNDIYIDNGKVCGFLTEMVA 197 (323)
T ss_dssp ---------CTTCEEEEEEEECCCCCTTSGGGHHHHHHH--HHHHHHHTTCSSCEEEET-TTEEEETTEEEEEEEEEEEE
T ss_pred CCCCCeeeCCCCCCEEEEEEecCCCCHHHHHHHHHHHHH--HHHHHHHHhcCCceEEeC-CCeEEECCEEEEEEEeEeee
Confidence 388999999999 67777777544322222 2344444 788999977 89999998 79999999999999887643
Q ss_pred ---c--EEEEeeEEeecCCCCCCCceecCCCCCCceeeechhhcCccccccccCCCChhhhHHHHHHHHHHHHHHhcc
Q 029546 101 ---W--IAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQ 173 (191)
Q Consensus 101 ---~--vt~HG~aLNV~~dL~~f~~I~PCGl~~~~vTSl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~~~F~ 173 (191)
. ...=|+.|||+++.+.| |-.+.. .+|||..+.+.. +++ .++...++++|.+.+.
T Consensus 198 ~~~~~~~vViGIGiNv~~~~~~~----p~~l~~-~atsL~~~~g~~---------~~r----~~ll~~ll~~l~~~~~ 257 (323)
T 3rkx_A 198 NNDGIEAIICGIGINLTQQLENF----DESIRH-RATSIQLHDKNK---------LDR----YQFLERLLQEIEKRYN 257 (323)
T ss_dssp CSSSEEEEEEEEEEECSCCGGGS----CTTTGG-GBCCSGGGCSSC---------CCH----HHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEEEEEecCCcccC----CcccCc-ceeeHhhhhCCC---------CCH----HHHHHHHHHHHHHHHH
Confidence 2 35669999999853332 444442 689999876643 453 4555666666666553
No 12
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=98.47 E-value=1.4e-06 Score=74.64 Aligned_cols=124 Identities=15% Similarity=0.104 Sum_probs=88.0
Q ss_pred CcCCceeEeCCC-CeEEEEeeecCCCC---CCHHHHHHHHHHHHHHHHh---hc-CCcceecCCCceeEeCCCeEEEecc
Q 029546 25 ERGGEVTYHGPG-QLVMYPIINLRNHK---MDLHWYLRALEEVAIRVLS---TF-SIKASRVEGLTGVWVGDQKLAAIGI 96 (191)
Q Consensus 25 ~RGG~iTyHgPG-QLV~YpIl~L~~~~---~~v~~yv~~Le~~vi~~L~---~~-gi~a~~~~~~~GVwv~~~KIasiGv 96 (191)
-|.|..++--|| .|.+-.++.....+ ...-.++-.+ ++.++|+ .+ +++...++ .++|+++++|||.|=+
T Consensus 72 GR~GR~W~Sp~G~~L~~S~~l~~~~~~~~~~~~lsl~~~l--Av~~aL~~~~~~~~~~~~iKW-PNDI~~~gkKl~GIL~ 148 (270)
T 3rux_A 72 GRHGRGWAATARAQIILSVGVRVVDVPVQAWGWLSLAAGL--AVLDSVAPLIAVPPAETGLKW-PNDVLARGGKLAGILA 148 (270)
T ss_dssp CGGGCEECCCTTSEEEEEEEEECTTSCGGGTHHHHHHHHH--HHHHHHGGGSSSCCSSCEEET-TTEEEETTEEEEEEEE
T ss_pred CCCCCeeeCCCCCCeEEEEEEccCCCChHHHHHHHHHHHH--HHHHHHHHhcccCCCceEEEC-CCeEEECCEEEEEEEE
Confidence 388999999999 78777777764322 1122344444 7889998 65 88899998 7999999999999988
Q ss_pred eEeCcEEEEeeEEeecCCCCCCCceecCCCCCCceeeechhhcCccccccccCCCChhhhHHHHHHHHHHHHHHhcc
Q 029546 97 RVSQWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQ 173 (191)
Q Consensus 97 ~i~~~vt~HG~aLNV~~dL~~f~~I~PCGl~~~~vTSl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~~~F~ 173 (191)
........=|+.|||++.-.. ++....|||..+.+.. + .+++...++++|.+.+.
T Consensus 149 E~~~~~vViGIGiNv~~~~~~--------~~~~~atSL~~~~~~~----------~----r~~ll~~ll~~l~~~~~ 203 (270)
T 3rux_A 149 EVAQPFVVLGVGLNVTQAPEE--------VDPDATSLLDLGVAAP----------D----RNRIASRLLRELEARII 203 (270)
T ss_dssp EEETTEEEEEEEEESSCCHHH--------HCTTBCCTGGGTCSSC----------C----HHHHHHHHHHHHHHHHH
T ss_pred EeeCCeEEEEEEEeccCCccc--------cCchhhccHHHhcCCC----------C----HHHHHHHHHHHHHHHHH
Confidence 876656778999999986211 2234789998765432 3 35556666777766653
No 13
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=98.45 E-value=1.2e-06 Score=73.57 Aligned_cols=125 Identities=19% Similarity=0.210 Sum_probs=90.2
Q ss_pred CcCCceeEeCCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHHHHhhc-CCcceecCCCceeEeCC----CeEEEecceEe
Q 029546 25 ERGGEVTYHGPGQLVMYPIINLRNHKMDLHWYLRALEEVAIRVLSTF-SIKASRVEGLTGVWVGD----QKLAAIGIRVS 99 (191)
Q Consensus 25 ~RGG~iTyHgPGQLV~YpIl~L~~~~~~v~~yv~~Le~~vi~~L~~~-gi~a~~~~~~~GVwv~~----~KIasiGv~i~ 99 (191)
-|.|..++.-||.|.+-.++.........-.++- --++.++|+.+ +++...+. .++|++++ +|||.|=+...
T Consensus 39 GR~Gr~W~Sp~G~l~~S~~l~p~~~~~~~l~l~~--~lAv~~al~~~~~~~~~iKW-PNDi~~~g~~~~kKl~GIL~E~~ 115 (237)
T 2ej9_A 39 GRWGRVWYSDEGGLYFSMVLDSKLYNPKVINLLV--PICIIEVLKNYVDKELGLKF-PNDIMVKVNDNYKKLGGILTELT 115 (237)
T ss_dssp CGGGCBCCCCTTSEEEEEEEETTSSCHHHHHHHH--HHHHHHHHTTTCCSCEEEET-TTEEEEEETTEEEEEEEEEEEEC
T ss_pred CCCCCeeeCCCCCeEEEeEEccccCCHHHHHHHH--HHHHHHHHHHhhCCCcceeC-CCEEEECCCcCccEeeEEEEecC
Confidence 3789999999999888888865222221222333 33788999987 89899998 79999999 99999988886
Q ss_pred CcEEEEeeEEeecCCCCCCCceecCCCCCCceeeechhhcCccccccccCCCChhhhHHHHHHHHHHHHHHhcc
Q 029546 100 QWIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQ 173 (191)
Q Consensus 100 ~~vt~HG~aLNV~~dL~~f~~I~PCGl~~~~vTSl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~~~F~ 173 (191)
.....=|+.|||+++ | |=.+. ...|||..+.+.. +++ +++...++++|.+.+.
T Consensus 116 ~~~vViGiGiNv~~~---~----p~~l~-~~atsL~~~~~~~---------~~r----~~ll~~ll~~l~~~~~ 168 (237)
T 2ej9_A 116 DDYMIIGIGINVNNQ---I----RNEIR-EIAISLKEITGKE---------LDK----VEILSNFLKTFESYLE 168 (237)
T ss_dssp SSEEEEEEEECSSSC---C----CGGGG-GTBCCHHHHHSSC---------CCH----HHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEecCCC---C----cchhh-hhhccHhHhHCCC---------CCH----HHHHHHHHHHHHHHHH
Confidence 677889999999986 2 32332 3689998877643 343 4555666667766653
No 14
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=98.23 E-value=1.8e-05 Score=68.80 Aligned_cols=125 Identities=17% Similarity=0.169 Sum_probs=74.5
Q ss_pred cCCceeEeCCC-CeEEEEeeecCCCCCCH--HHHHHHHHHHHHHHHhhcCC-cceecCCCceeEeCCCeEEEecceEeC-
Q 029546 26 RGGEVTYHGPG-QLVMYPIINLRNHKMDL--HWYLRALEEVAIRVLSTFSI-KASRVEGLTGVWVGDQKLAAIGIRVSQ- 100 (191)
Q Consensus 26 RGG~iTyHgPG-QLV~YpIl~L~~~~~~v--~~yv~~Le~~vi~~L~~~gi-~a~~~~~~~GVwv~~~KIasiGv~i~~- 100 (191)
|.|..++--|| .|.+-.++........+ -.++-.+ ++.++|+.+++ +...++ .++|+++++|||.|=+....
T Consensus 118 R~gr~W~Sp~g~~l~~S~~l~~~~~~~~~~~l~l~~~~--av~~al~~~~~~~~~iKW-PNDi~~~g~Kl~GIL~E~~~~ 194 (321)
T 1bia_A 118 RRGRKWFSPFGANLYLSMFWRLEQGPAAAIGLSLVIGI--VMAEVLRKLGADKVRVKW-PNDLYLQDRKLAGILVELTGK 194 (321)
T ss_dssp -------CCTTSEEEEEEEEEECC-CCCTHHHHHHHHH--HHHHHHHHTTCTTCEEET-TTEEEETTEEEEEEEEEEEC-
T ss_pred CCCCcccCCCCCCEEEEEEEccCCChHHHhhHHHHHHH--HHHHHHHHhCCCCccEeC-cceeeECCeeEEEEEEEeeec
Confidence 78889888889 67777777554322222 2344444 78999999988 578888 79999999999999887643
Q ss_pred ----cEEEEeeEEeecCCCCCCCceecCCCCCCceeeechhhcCccccccccCCCChhhhHHHHHHHHHHHHHHhcc
Q 029546 101 ----WIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQ 173 (191)
Q Consensus 101 ----~vt~HG~aLNV~~dL~~f~~I~PCGl~~~~vTSl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~~~F~ 173 (191)
....=|+.|||+++- +| |-.+. ..+|||.. .+. .+++ +++...++++|.+.+.
T Consensus 195 ~~~~~~~viGiGiNv~~~~-~~----~~~~~-~~atsL~~-~~~---------~~~r----~~ll~~ll~~l~~~~~ 251 (321)
T 1bia_A 195 TGDAAQIVIGAGINMAMRR-VE----ESVVN-QGWITLQE-AGI---------NLDR----NTLAAMLIRELRAALE 251 (321)
T ss_dssp ---CEEEEEEEEEECCC-----------------CCCTTT-TTC---------CCCH----HHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEEEEecCCCc-cc----cchhc-cccccHHh-cCC---------CCCH----HHHHHHHHHHHHHHHH
Confidence 246779999999864 22 21222 25789877 432 2453 4555566666665553
No 15
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=98.02 E-value=5.6e-05 Score=62.96 Aligned_cols=122 Identities=10% Similarity=-0.074 Sum_probs=77.8
Q ss_pred CceeEeCCC-CeEEEEeeecCCCC--CCHHHHHHHHHHHHHHHHhhcCC-c--ceecCCCceeEeCCCeEEEecceEeC-
Q 029546 28 GEVTYHGPG-QLVMYPIINLRNHK--MDLHWYLRALEEVAIRVLSTFSI-K--ASRVEGLTGVWVGDQKLAAIGIRVSQ- 100 (191)
Q Consensus 28 G~iTyHgPG-QLV~YpIl~L~~~~--~~v~~yv~~Le~~vi~~L~~~gi-~--a~~~~~~~GVwv~~~KIasiGv~i~~- 100 (191)
|.+.+-.|| .|.+-.++...... ...-.++-.+ ++.++|+.++. + ...++ .++|++++||||.|=+....
T Consensus 38 g~vv~A~~g~~L~~S~~l~~~~~~~~~~~lsl~~al--Av~~aL~~~~~~~~~~~iKW-PNDI~~~gkKl~GIL~E~~~~ 114 (235)
T 3bfm_A 38 GLVVYELGTDVLRAALVLAPEVPLAKAMAMLPVCGV--GFQNALGALAPPEVAVHLDW-NGALRINGARCGRLRIAASTD 114 (235)
T ss_dssp TEEEEEECSSEEEEEEEECCSSCHHHHTTHHHHHHH--HHHHHHHHHSCTTCCEEECT-TSEEEETTEEEEEEEEEESCC
T ss_pred CEEEEEcCCCCEEEEEEecCCCCHHHHHHHHHHHHH--HHHHHHHHhcCCCcceEecC-CCeEEECCeEEEEEEEEeecc
Confidence 344444477 46666666443211 0111244444 78889988765 3 67887 79999999999999887743
Q ss_pred ------cEEEEeeEEeecCCCCCCCceecCCCCCCceeeechhhcCccccccccCCCChhhhHHHHHHHHHHHHHHhcc
Q 029546 101 ------WIAYHGLALNVTTDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQ 173 (191)
Q Consensus 101 ------~vt~HG~aLNV~~dL~~f~~I~PCGl~~~~vTSl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~~~F~ 173 (191)
....=|+.|||+..- +. ++. ...||+..+.+.. ++ .+++...++++|.+.+.
T Consensus 115 ~~~~~~~~vViGIGiNv~~~~--~~-----~~~-~~atsL~~~~~~~---------~~----r~~ll~~ll~~l~~~~~ 172 (235)
T 3bfm_A 115 DPDTQPDWLVVGLDLPLWPEG--DG-----GET-PDETALYAEGCAD---------VA----APRLLESWARHCLHWIN 172 (235)
T ss_dssp CTTSCCSCEEEEEEEESSCCC--SS-----CCC-CCSCCGGGTTCTT---------CC----HHHHHHHHHHHHHHHHH
T ss_pred CCCCCccEEEEEEEEEcCCCC--cc-----ccc-ccccchhHhhCCC---------CC----HHHHHHHHHHHHHHHHH
Confidence 257889999999762 22 222 2589998876642 44 34556666777766654
No 16
>2ddz_A 190AA long hypothetical protein; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; 2.24A {Pyrococcus horikoshii} SCOP: d.104.1.4
Probab=90.05 E-value=4 Score=33.24 Aligned_cols=110 Identities=25% Similarity=0.270 Sum_probs=63.5
Q ss_pred eEEEEeeecCCCCCCHH-HHHHH--HHHHHHHHHhhcCCcceecCCCceeEeCCCeEEEecceEeC--cEEEEeeEEeec
Q 029546 38 LVMYPIINLRNHKMDLH-WYLRA--LEEVAIRVLSTFSIKASRVEGLTGVWVGDQKLAAIGIRVSQ--WIAYHGLALNVT 112 (191)
Q Consensus 38 LV~YpIl~L~~~~~~v~-~yv~~--Le~~vi~~L~~~gi~a~~~~~~~GVwv~~~KIasiGv~i~~--~vt~HG~aLNV~ 112 (191)
-+..+|+.--.. .+++ .|.++ |=..+-++|.++|++..|.. .++|+++||+. +-++... ..-.| +++||+
T Consensus 67 dmlhFIvEhFD~-~dl~~~y~rQRLlv~i~kE~L~~~g~~~~R~G--DDLy~~~~KLS-VSIAt~s~vS~kIH-~GiNV~ 141 (190)
T 2ddz_A 67 DMVHYILELFWH-PDILLASSLQKLLIARLVELLWNYGIEASRRG--DDIYVNGRKLS-ISIATVSPVSIKIH-IGLNVK 141 (190)
T ss_dssp EEEEEEEEECSC-CCHHHHHHHHHHHHHHHHHHHHTTTCCEEEET--TEEEETTEECE-EEEEEECSSCEEEE-EEEESC
T ss_pred cceEEEEeeCCC-ccHHHHHHHHHHHHHHHHHHHHHcCCeeeecc--CeeeECCCEEE-EEEEecCcchheEE-EEEeec
Confidence 455555522221 2443 45444 55567788889999999886 59999999953 2222222 23334 899999
Q ss_pred CCCCCCCceecCCCCCCceeeechhhcCccccccccCCCChhhhHHHHHHHHHHHHHHhcc
Q 029546 113 TDLTPFRWIVPCGIQNRHVGSIKGLLGESQSLTAEFRHPDDCKLIDIAHNSLIKEFSEVFQ 173 (191)
Q Consensus 113 ~dL~~f~~I~PCGl~~~~vTSl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~~~F~ 173 (191)
.+=.| - +....+|.++.- +..++++.+...+++.+.++-.
T Consensus 142 s~g~P------~---~V~aigL~dlGi------------~i~~~~~~i~~~y~~E~~~Ie~ 181 (190)
T 2ddz_A 142 TVGVP------P---GVDAIGLEELGI------------DPTEFMERSAKALVEEIEKVRK 181 (190)
T ss_dssp CSSCC------S---SSCBCCHHHHTC------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCC------C---CccccCHHHcCC------------CHHHHHHHHHHHHHHHHHHHHH
Confidence 87422 1 233555555332 1233466666666666665543
No 17
>2iru_A Putative DNA ligase-like protein RV0938/MT0965; polymerase, primase, NHEJ, transferase; 1.65A {Mycobacterium tuberculosis} PDB: 2irx_A* 2iry_A* 2r9l_A* 3pky_A*
Probab=29.81 E-value=97 Score=26.72 Aligned_cols=58 Identities=12% Similarity=0.163 Sum_probs=38.2
Q ss_pred CceeEeCCCCeE-E-------------EEeeecCCC-CCCHHHHHHHHHHHHHHHHhhcCCcceec-CCCceeEe
Q 029546 28 GEVTYHGPGQLV-M-------------YPIINLRNH-KMDLHWYLRALEEVAIRVLSTFSIKASRV-EGLTGVWV 86 (191)
Q Consensus 28 G~iTyHgPGQLV-~-------------YpIl~L~~~-~~~v~~yv~~Le~~vi~~L~~~gi~a~~~-~~~~GVwv 86 (191)
|-+.+|-++..+ . +.+|||... +.+..+-++ .-..+-+.|+++|+.++.+ .|..|+-|
T Consensus 109 g~lE~H~w~~r~~~~~~~~~~~~~~PD~lvfDLDP~~~~~f~~v~~-aA~~~r~~L~~lGL~~f~KTSGgkGlHV 182 (303)
T 2iru_A 109 AALEVHVPQWRFVAEPGSGELNPGPATRLVFDLDPGEGVMMAQLAE-VARAVRDLLADIGLVTFPVTSGSKGLHL 182 (303)
T ss_dssp TCCEEEECSEEEEECTTTCCEEEEEEEEEEEEEEECTTCCHHHHHH-HHHHHHHHHHTTTCCCEEEECSSSCEEE
T ss_pred CcEeeeCCccccccccccccCCCCCCCEEEEECCCCCCCCHHHHHH-HHHHHHHHHHHcCCccceEccCCCeEEE
Confidence 557778777666 3 568899764 344443332 2334678899999999865 55667654
Done!