Query 029548
Match_columns 191
No_of_seqs 145 out of 1032
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 14:41:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029548.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029548hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02373 soluble inorganic pyr 100.0 4.6E-66 1E-70 430.8 17.0 162 30-191 1-175 (188)
2 PRK00642 inorganic pyrophospha 100.0 1E-62 2.2E-67 415.5 16.6 158 34-191 5-197 (205)
3 PLN02707 Soluble inorganic pyr 100.0 2.3E-61 5E-66 420.3 17.0 177 13-191 33-248 (267)
4 PRK01250 inorganic pyrophospha 100.0 4.2E-61 9.2E-66 397.5 16.1 153 39-191 1-170 (176)
5 cd00412 pyrophosphatase Inorga 100.0 1E-57 2.2E-62 370.8 15.4 140 52-191 1-154 (155)
6 PRK02230 inorganic pyrophospha 100.0 7.7E-57 1.7E-61 374.2 14.9 140 52-191 3-156 (184)
7 PF00719 Pyrophosphatase: Inor 100.0 1.8E-56 3.9E-61 363.6 11.0 137 55-191 1-151 (156)
8 COG0221 Ppa Inorganic pyrophos 100.0 3E-55 6.5E-60 361.2 14.8 152 39-191 1-166 (171)
9 KOG1626 Inorganic pyrophosphat 100.0 3.3E-54 7.1E-59 371.7 11.6 176 15-191 6-224 (279)
10 KOG1626 Inorganic pyrophosphat 95.8 0.0082 1.8E-07 53.2 3.4 55 7-61 7-61 (279)
11 PF07177 Neuralized: Neuralize 46.7 20 0.00043 25.3 2.5 22 95-116 30-51 (69)
12 cd05694 S1_Rrp5_repeat_hs2_sc2 38.8 23 0.00049 25.0 1.8 28 80-117 30-57 (74)
13 smart00588 NEUZ domain in neur 37.8 40 0.00088 26.3 3.2 46 90-139 26-71 (123)
14 KOG1110 Putative steroid membr 36.1 20 0.00042 30.5 1.3 38 128-166 108-145 (183)
15 PF14259 RRM_6: RNA recognitio 35.9 33 0.00073 22.6 2.2 39 152-190 10-59 (70)
16 cd01460 vWA_midasin VWA_Midasi 33.9 19 0.00041 31.9 0.9 26 139-164 238-263 (266)
17 COG4766 EutQ Ethanolamine util 31.8 24 0.00052 29.5 1.1 23 57-81 145-174 (176)
18 smart00512 Skp1 Found in Skp1 28.3 1.4E+02 0.0029 22.0 4.6 45 146-190 46-99 (104)
19 smart00362 RRM_2 RNA recogniti 27.6 1E+02 0.0022 19.0 3.4 37 153-189 12-58 (72)
20 PF06249 EutQ: Ethanolamine ut 25.5 24 0.00052 29.0 0.1 23 58-80 123-150 (152)
21 PF05182 Fip1: Fip1 motif; In 24.9 21 0.00045 23.8 -0.3 10 78-87 24-33 (45)
22 smart00360 RRM RNA recognition 24.8 1.6E+02 0.0035 17.8 4.0 37 153-189 9-57 (71)
23 PF00076 RRM_1: RNA recognitio 24.8 92 0.002 19.8 2.9 37 153-189 11-58 (70)
24 PTZ00162 DNA-directed RNA poly 22.9 1.9E+02 0.0041 23.9 4.9 61 77-143 103-171 (176)
25 COG4447 Uncharacterized protei 22.8 1.1E+02 0.0023 28.3 3.6 61 66-131 83-163 (339)
26 PF08437 Glyco_transf_8C: Glyc 22.7 40 0.00086 23.1 0.7 12 36-47 11-22 (57)
27 PF07469 DUF1518: Domain of un 22.4 45 0.00098 23.4 1.0 14 73-86 18-31 (58)
No 1
>PLN02373 soluble inorganic pyrophosphatase
Probab=100.00 E-value=4.6e-66 Score=430.83 Aligned_cols=162 Identities=91% Similarity=1.487 Sum_probs=157.9
Q ss_pred ccccCCcccCCCCCCCCCCCCCCeEEEEEEeCCCCC-------------CCcccccCCCCcccccccccccCCCCCccce
Q 029548 30 SMSRRSVAAHPWHDLEIGPGAPKIFNCVIEIGKGSK-------------VDRVLYSSVVYPHNYGFIPRTLCEDNDPLDV 96 (191)
Q Consensus 30 ~~~~~~~~~spwhdip~~~~~p~~vn~vVEIPkgs~-------------~dR~~~~~~~yP~NYGfIP~T~~gDgDPLDv 96 (191)
+|+++...+||||+||++++.|+.+|||||||+||+ +||++++++.||||||||||||+||||||||
T Consensus 1 ~~~~~~~~~~~whdi~~~~~~~~~v~vVIEIP~gs~~KyE~dk~~g~i~~Dr~l~~~~~yP~nYGfIP~T~~~DgDPLDv 80 (188)
T PLN02373 1 SMSRRSVAAHPWHDLEIGPGAPAIFNCVVEITKGSKVKYELDKKTGLIKVDRVLYSSVVYPHNYGFIPRTLCEDNDPLDV 80 (188)
T ss_pred CcccccccCCccccCCCCCCCCCEEEEEEEECCCCCeeEEEccCCCCEEEeeecccCCcCCcccccccccccCCCCccEE
Confidence 477888999999999999999999999999999998 6999999999999999999999999999999
Q ss_pred EEecccccCCeeEEEEEEeeeEeeEeCCCCceEEEEEecCCcCccCCCCCCCCChhHHHHHHHHHHHcccCCCceeEeCc
Q 029548 97 LIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDYKKNENKEVAVND 176 (191)
Q Consensus 97 lvl~~~p~~pG~vv~vrviG~l~miD~ge~D~KiIaV~~~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~~egK~~~~~g 176 (191)
|||++.++.||++++||+||+|+|+|+||.|||||||+++||+|++|++++|||++++++|+|||++||.+|||+++++|
T Consensus 81 lvl~~~~~~~G~vi~~R~iG~l~m~D~ge~D~KiIaV~~~dp~~~~i~dl~Dl~~~~l~~I~~fF~~YK~legK~v~v~g 160 (188)
T PLN02373 81 LVLMQEPVLPGCFLRARAIGLMPMIDQGEKDDKIIAVCADDPEYRHYTDIKELPPHRLAEIRRFFEDYKKNENKEVAVND 160 (188)
T ss_pred EEecCCCCCCceEEEEEEEEEEEEeeCCCCCCeEEEEECCCcccccCCChHHCCHHHHHHHHHHHHHhcccCCCeEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHhhC
Q 029548 177 FLPASDAYNSVQQSM 191 (191)
Q Consensus 177 ~~~~~~A~~vI~~~~ 191 (191)
|.|+++|+++|++|+
T Consensus 161 ~~~~~~A~~~I~~~~ 175 (188)
T PLN02373 161 FLPAEAAIEAIQYSM 175 (188)
T ss_pred ccCHHHHHHHHHHHH
Confidence 999999999999984
No 2
>PRK00642 inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=1e-62 Score=415.49 Aligned_cols=158 Identities=41% Similarity=0.658 Sum_probs=150.5
Q ss_pred CCcccCCCCCCCCCCCCCCeEEEEEEeCCCCC-------------CCcccccCCCCcccccccccccC------------
Q 029548 34 RSVAAHPWHDLEIGPGAPKIFNCVIEIGKGSK-------------VDRVLYSSVVYPHNYGFIPRTLC------------ 88 (191)
Q Consensus 34 ~~~~~spwhdip~~~~~p~~vn~vVEIPkgs~-------------~dR~~~~~~~yP~NYGfIP~T~~------------ 88 (191)
.+..+|||||||++++.|+.+||||||||||+ +||++++++.||||||||||||+
T Consensus 5 ~~~~~spwhdi~~~~~~~~~vn~VIEIP~gs~~KyE~dk~~g~~~ldr~l~~~~~yP~nYGfIPqT~~dp~~~~~~~~~~ 84 (205)
T PRK00642 5 PLSRAHPWHGLSLGPDAPESVCCYIEITPFDTVKYELDKATGYLKVDRPQKFSNFCPALYGFIPRTYCGDLSGKLSGEQS 84 (205)
T ss_pred cccccCccccCCCCCCCCCEEEEEEEECCCCCeeEEEecCCCceEEeeecccCCcCCcccCcCcccccCccccccccccc
Confidence 45678999999999988999999999999998 78999999999999999999995
Q ss_pred ------CCCCccceEEecccccCCeeE-EEEEEeeeEeeEeCCCCceEEEEEecCCcCccCCCCCCCCChhHHHHHHHHH
Q 029548 89 ------EDNDPLDVLIIMQEPVLPGCF-LRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFF 161 (191)
Q Consensus 89 ------gDgDPLDvlvl~~~p~~pG~v-v~vrviG~l~miD~ge~D~KiIaV~~~dp~~~~i~di~Dl~~~~l~~i~~fF 161 (191)
|||||||||||++.++.||++ ++|||||+|+|+|+||+|||||||+++||+|++|++++||+++++++|+|||
T Consensus 85 ~~~~~~gDgDPLDvlvl~~~~~~~G~v~i~~R~iG~l~miD~ge~D~KIiaV~~~Dp~~~~i~dl~Dl~~~~l~~I~~fF 164 (205)
T PRK00642 85 GREDIKGDGDPLDICVLTEKNITHGNILLQARPIGGLRMIDGGEADDKIIAVLEDDLVYGEIKDISECPGTLLDRLQHYF 164 (205)
T ss_pred ccccCCCCCCceEEEEecCCCcCCCceEEEEEEeEEEEEecCCCccceEEEEECCCCccccCCChHHCCHHHHHHHHHHH
Confidence 799999999999999999985 7999999999999999999999999999999999999999999999999999
Q ss_pred HHcccCCC---ceeEeCcccCHHHHHHHHHhhC
Q 029548 162 EDYKKNEN---KEVAVNDFLPASDAYNSVQQSM 191 (191)
Q Consensus 162 ~~YK~~eg---K~~~~~g~~~~~~A~~vI~~~~ 191 (191)
++||.++| |++.++||.|+++|+++|++|+
T Consensus 165 ~~YK~legk~~k~~~~~g~~~~~~A~~vI~~~~ 197 (205)
T PRK00642 165 LTYKATPGELIKGVEIVGIYGKEEAQKVIQLAH 197 (205)
T ss_pred HHHcCcccCCCCeEEECCCcCHHHHHHHHHHHH
Confidence 99999995 4489999999999999999984
No 3
>PLN02707 Soluble inorganic pyrophosphatase
Probab=100.00 E-value=2.3e-61 Score=420.31 Aligned_cols=177 Identities=32% Similarity=0.530 Sum_probs=159.2
Q ss_pred cCCCCCCCCCCceeeeeccccCCcccCCCCCCCCCCCCCCeEEEEEEeCCCCC---------------CCcccccCCCCc
Q 029548 13 PVSQPPAHPPLNERILSSMSRRSVAAHPWHDLEIGPGAPKIFNCVIEIGKGSK---------------VDRVLYSSVVYP 77 (191)
Q Consensus 13 ~~~~~~~~~~~~~r~~~~~~~~~~~~spwhdip~~~~~p~~vn~vVEIPkgs~---------------~dR~~~~~~~yP 77 (191)
-..+.|..+|.+||+|+ ....|..+|||||||++ ..++.+||||||||||+ +||.......||
T Consensus 33 ~~~~~G~~~t~~~r~~~-~~~~g~~~spwHdIpl~-~~~~~vn~VVEIPrgs~~KyEidk~~~~npi~qD~~~g~lr~yP 110 (267)
T PLN02707 33 AVEEEGEAETLDYRVFF-SDGSGKKVSPWHDIPLH-AGDGTFNFVVEIPKETSAKMEVATDEPFTPIKQDTKKGKLRDYP 110 (267)
T ss_pred eEEeecCCCCcceEEEE-ECCCCCccCchhcCCCC-CCCCEEEEEEEECCCCceeEEECccCCCCCEEEeeecCceEECC
Confidence 34588999999999985 23468889999999999 56899999999999999 356554444555
Q ss_pred ----cccccccccc-------------CCCCCccceEEecccccCCeeEEEEEEeeeEeeEeCCCCceEEEEEecCCcCc
Q 029548 78 ----HNYGFIPRTL-------------CEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEY 140 (191)
Q Consensus 78 ----~NYGfIP~T~-------------~gDgDPLDvlvl~~~p~~pG~vv~vrviG~l~miD~ge~D~KiIaV~~~dp~~ 140 (191)
|||||||||| +|||||||||||++.++.||++++|||||+|+|+|+||+|||||||+++||+|
T Consensus 111 ~~~~~NYGfIPqTwedp~~~~~~~~~l~gDgDPLDVlvi~~~~~~pG~Vv~vR~IGvL~miDeGE~D~KIIaV~~~Dp~~ 190 (267)
T PLN02707 111 YNINWNYGLLPQTWEDPTHANPEVEGAFGDNDPVDVVEIGERAAKIGEVLKVKPLGVLAMIDEGELDWKVVAISADDPKA 190 (267)
T ss_pred CcCccccccccccccCcccccccccccCCCCCccEEEEecCCCcCCccEEEEEEeEEEEEEeCCCCCCEEEEEECCCCcc
Confidence 5999999997 58999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCChhH---HHHHHHHHHHcccCCCceeEe----CcccCHHHHHHHHHhhC
Q 029548 141 RHYNDIKELPPHR---LAEIRRFFEDYKKNENKEVAV----NDFLPASDAYNSVQQSM 191 (191)
Q Consensus 141 ~~i~di~Dl~~~~---l~~i~~fF~~YK~~egK~~~~----~g~~~~~~A~~vI~~~~ 191 (191)
++|+|++||+++. +++|+|||++||.++||++++ ++|.|+++|+++|++|+
T Consensus 191 ~~i~di~Dv~~~~pg~l~~I~~fF~~YK~~eGK~~n~~~~~~~~~~~~~A~~vI~e~~ 248 (267)
T PLN02707 191 SLVNDVDDVEKHFPGTLTAIRDWFRDYKIPDGKPANKFGLDNKPMDKDYALKVIEETN 248 (267)
T ss_pred cccCChhHhhhhhhhHHHHHHHHHHHhcCCCCCceeeccccCCcCCHHHHHHHHHHHH
Confidence 9999999998765 899999999999999999876 57999999999999985
No 4
>PRK01250 inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=4.2e-61 Score=397.54 Aligned_cols=153 Identities=41% Similarity=0.722 Sum_probs=148.1
Q ss_pred CCCCCCCCCCCCCCeEEEEEEeCCCCC--------------CCcccccCCCCcccccccccccCCCCCccceEEeccccc
Q 029548 39 HPWHDLEIGPGAPKIFNCVIEIGKGSK--------------VDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPV 104 (191)
Q Consensus 39 spwhdip~~~~~p~~vn~vVEIPkgs~--------------~dR~~~~~~~yP~NYGfIP~T~~gDgDPLDvlvl~~~p~ 104 (191)
+.||++|.+.+.|+.+||||||||||+ +||++++++.||||||||||||+|||||||||||++.++
T Consensus 1 ~~~~~l~~~~~~~~~v~vvvEIPkgs~~~KyE~d~~~g~~~~dR~l~~~~~yP~nYGfIP~T~~~DgDPLDvlvl~~~~~ 80 (176)
T PRK01250 1 MSLNKIPAGKDLPEDINVIIEIPANSDPIKYEVDKESGALFVDRFLYTAMFYPCNYGFIPHTLSLDGDPVDVLVVTPYPL 80 (176)
T ss_pred CChhhCCCCCCCCCEEEEEEEeCCCCCceeEEEecCCCCEEEeeccCCCCcCCcCcccCCCcccCCCCceEEEEecCCCC
Confidence 368999999999999999999999998 589999999999999999999999999999999999999
Q ss_pred CCeeEEEEEEeeeEeeEeCCCCceEEEEEecC--CcCccCCCCCCCCChhHHHHHHHHHHHcccCC-CceeEeCcccCHH
Q 029548 105 LPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYRHYNDIKELPPHRLAEIRRFFEDYKKNE-NKEVAVNDFLPAS 181 (191)
Q Consensus 105 ~pG~vv~vrviG~l~miD~ge~D~KiIaV~~~--dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~~e-gK~~~~~g~~~~~ 181 (191)
.||++++|||||+|+|+|+||.|||||||+++ ||+|++|++++||+++++++|+|||++||.++ ||++++.||.|++
T Consensus 81 ~~G~vv~~r~iG~l~m~D~ge~D~KiiaV~~~~~dp~~~~i~dl~dl~~~~l~eI~~fF~~YK~le~gk~~~v~g~~~~~ 160 (176)
T PRK01250 81 VPGSVIRCRPVGVLKMEDESGEDAKIIAVPHDKLSPEYDHIKDVNDLPELLKAQIKHFFEHYKDLEKGKWVKVEGWGGAE 160 (176)
T ss_pred CCceEEEEEEEEEEEeecCCCCCCeEEEEECCCCCccccccCChHHCCHHHHHHHHHHHHHhcCCCCCCCEEecCccCHH
Confidence 99999999999999999999999999999998 79999999999999999999999999999998 8999999999999
Q ss_pred HHHHHHHhhC
Q 029548 182 DAYNSVQQSM 191 (191)
Q Consensus 182 ~A~~vI~~~~ 191 (191)
+|+++|++|+
T Consensus 161 ~A~~~I~~~~ 170 (176)
T PRK01250 161 EAKAEIVEAI 170 (176)
T ss_pred HHHHHHHHHH
Confidence 9999999984
No 5
>cd00412 pyrophosphatase Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules of orthophosphates (Pi). The reaction requires bivalent cations. The enzymes in general exist as homooligomers.
Probab=100.00 E-value=1e-57 Score=370.81 Aligned_cols=140 Identities=54% Similarity=0.930 Sum_probs=136.2
Q ss_pred CeEEEEEEeCCCCC-------------CCcccccCCCCcccccccccccCCCCCccceEEecccccCCeeEEEEEEeeeE
Q 029548 52 KIFNCVIEIGKGSK-------------VDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLM 118 (191)
Q Consensus 52 ~~vn~vVEIPkgs~-------------~dR~~~~~~~yP~NYGfIP~T~~gDgDPLDvlvl~~~p~~pG~vv~vrviG~l 118 (191)
+.+||||||||||+ +||++++++.||||||||||||++||||||||||++.|+.||++++||+||+|
T Consensus 1 ~~v~vvIEIP~gs~~KyE~d~~~g~i~~DR~l~~~~~yP~nYGfiP~T~~~DgDPlDvlvl~~~~~~~G~~~~~r~iG~l 80 (155)
T cd00412 1 EVVNVVIEIPKGSNAKYEIDKETGPIKVDRFLYSSMGYPWNYGFIPQTLEDDGDPLDVLVIGEEPLFPGSVIRVRPLGVL 80 (155)
T ss_pred CEEEEEEEECCCCceeEEEccCCCceeeccccccCCcCcccccccCCcccCCCCceEEEEEcCCCCCCeeEEEEEEEEEE
Confidence 36999999999998 69999999999999999999999999999999999999999999999999999
Q ss_pred eeEeCCCCceEEEEEecCCcCccCCCCCCCCChhHHHHHHHHHHHcccCCC-ceeEeCcccCHHHHHHHHHhhC
Q 029548 119 PMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDYKKNEN-KEVAVNDFLPASDAYNSVQQSM 191 (191)
Q Consensus 119 ~miD~ge~D~KiIaV~~~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~~eg-K~~~~~g~~~~~~A~~vI~~~~ 191 (191)
+|+|+||.|||||||+.+||+|++|++++|||++++++|+|||++||.++| |++++.||.|+++|+++|++|+
T Consensus 81 ~m~D~ge~D~KiiaV~~~dp~~~~i~~l~Dl~~~~l~~I~~fF~~YK~le~~k~~~~~g~~~~~~A~~~I~~~~ 154 (155)
T cd00412 81 KMIDEGETDWKVIAVPVDDPRYSHINDISDVPPHLLDEIKHFFEHYKDLEGKKEVKVAGWKDKEEALKIIKESI 154 (155)
T ss_pred EeccCCCccceEEEeeCCCcccccCCChHHCCHHHHHHHHHHHHHhcccCCCCceEECcCcCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999997 7899999999999999999985
No 6
>PRK02230 inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=7.7e-57 Score=374.23 Aligned_cols=140 Identities=46% Similarity=0.709 Sum_probs=135.8
Q ss_pred CeEEEEEEeCCCCC-------------CCcccccCCCCcccccccccccCCCCCccceEEecccccCCeeEEEEEEeeeE
Q 029548 52 KIFNCVIEIGKGSK-------------VDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLM 118 (191)
Q Consensus 52 ~~vn~vVEIPkgs~-------------~dR~~~~~~~yP~NYGfIP~T~~gDgDPLDvlvl~~~p~~pG~vv~vrviG~l 118 (191)
+.+|||||||+||+ +||++++++.||+|||||||||+|||||||||||++.++.||++++||+||+|
T Consensus 3 ~~vnvvIEIP~gs~~KyE~d~~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DGDPLDvlvl~~~~~~pG~vi~~r~IGvl 82 (184)
T PRK02230 3 KIIEVTIEIPKGSNIKYEYDRKTNKIVVDRILRGDFVYPANYGFIKEALDWDGDELDVLVYSDQKFLPGTVLNARIIGAM 82 (184)
T ss_pred cEEEEEEEECCCCCeeEEEecCCCCEEEEeecCCCCCCCcCcccCCCccCCCCCceEEEEECCCCCCCccEEEEEEEEEE
Confidence 57999999999998 79999999999999999999999999999999999999999999999999999
Q ss_pred eeEeCCCCceEEEEEecCCcCccCCCCCCCCChhHHHHHHHHHHHcccCCCcee-EeCcccCHHHHHHHHHhhC
Q 029548 119 PMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDYKKNENKEV-AVNDFLPASDAYNSVQQSM 191 (191)
Q Consensus 119 ~miD~ge~D~KiIaV~~~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~~egK~~-~~~g~~~~~~A~~vI~~~~ 191 (191)
+|+|+||.|||||||+.+||+|++|++++|||++++++|+|||++||.++||++ +++||.|+++|+++|++|+
T Consensus 83 ~m~D~ge~D~KIIaV~~~dp~~~~i~di~Dlp~~~l~~I~~fF~~YK~legk~~~~v~g~~~~~~A~~~I~~~~ 156 (184)
T PRK02230 83 KMIDDGETDTKLIAVHDDDYRLDHINSLKDLPQHWLDEIEYFFSNYKNWKRKGITKVKGFEDEKWALKEYKECV 156 (184)
T ss_pred EeccCCCcCcEEEEEECCCCChhhcCChHHCCHHHHHHHHHHHHHhcCCCCCCeEEeCCccCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998876 5999999999999999985
No 7
>PF00719 Pyrophosphatase: Inorganic pyrophosphatase; InterPro: IPR008162 Inorganic pyrophosphatase (3.6.1.1 from EC) (PPase) [, ] is the enzyme responsible for the hydrolysis of pyrophosphate (PPi) which is formed principally as the product of the many biosynthetic reactions that utilise ATP. All known PPases require the presence of divalent metal cations, with magnesium conferring the highest activity. Among other residues, a lysine has been postulated to be part of or close to the active site. PPases have been sequenced from bacteria such as Escherichia coli (homohexamer), Bacillus PS3 (Thermophilic bacterium PS-3) and Thermus thermophilus, from the archaebacteria Thermoplasma acidophilum, from fungi (homodimer), from a plant, and from bovine retina. In yeast, a mitochondrial isoform of PPase has been characterised which seems to be involved in energy production and whose activity is stimulated by uncouplers of ATP synthesis. The sequences of PPases share some regions of similarities, among which is a region that contains three conserved aspartates that are involved in the binding of cations.; GO: 0000287 magnesium ion binding, 0004427 inorganic diphosphatase activity, 0006796 phosphate-containing compound metabolic process, 0005737 cytoplasm; PDB: 2UXS_A 1WCF_A 1SXV_A 3I4Q_A 2PRD_A 2IHP_B 1PYP_A 2IK7_A 2IK4_A 1E9G_A ....
Probab=100.00 E-value=1.8e-56 Score=363.58 Aligned_cols=137 Identities=53% Similarity=0.914 Sum_probs=128.3
Q ss_pred EEEEEeCCCCC-------------CCcccccCCCCcccccccccccCCCCCccceEEecccccCCeeEEEEEEeeeEeeE
Q 029548 55 NCVIEIGKGSK-------------VDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMI 121 (191)
Q Consensus 55 n~vVEIPkgs~-------------~dR~~~~~~~yP~NYGfIP~T~~gDgDPLDvlvl~~~p~~pG~vv~vrviG~l~mi 121 (191)
||||||||||+ +||++++++.||+|||||||||+||||||||||||+.|+.||++++||+||+|+|+
T Consensus 1 n~viEIP~gs~~KyE~d~~~~~~~idr~~~~~~~yP~NYGfIP~T~~~DGDPLDvlvl~~~~~~~G~v~~~r~iG~l~m~ 80 (156)
T PF00719_consen 1 NVVIEIPKGSRAKYEYDKETGLNPIDRPLYSSMPYPFNYGFIPQTLGGDGDPLDVLVLGSEPLPPGSVVRVRVIGVLKMI 80 (156)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEE-SSSBS-SSEEEEETTEEBTTSSCEEEEEESSS---TTEEEEEEEEEEEEEE
T ss_pred CEEEEECCCCCeeEEECCCCCCccceeccccCcCCccccccccceecCCCCeeeEEEEecccccceeEEEEeceEEEEEe
Confidence 79999999998 68999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCceEEEEEecCCcCccCCCCCCCCChhHHHHHHHHHHHcccC-CCceeEeCcccCHHHHHHHHHhhC
Q 029548 122 DQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDYKKN-ENKEVAVNDFLPASDAYNSVQQSM 191 (191)
Q Consensus 122 D~ge~D~KiIaV~~~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~~-egK~~~~~g~~~~~~A~~vI~~~~ 191 (191)
|+||+|||||||+.+||+|++|++++|++++.+++|++||++||.+ +||++.+++|.|+++|+++|++|+
T Consensus 81 D~ge~D~KiiaV~~~dp~~~~i~dl~dl~~~~~~~i~~fF~~YK~l~~~k~~~~~~~~~~~~A~~~i~~~~ 151 (156)
T PF00719_consen 81 DDGERDDKIIAVPVDDPRYDDIKDLEDLPPHLLDEIEHFFRNYKDLEENKWVEVGGWEDAEEALKVIKEAH 151 (156)
T ss_dssp ETTEEEEEEEEEETTCGGGTTHHSGGGSSHHHHHHHHHHHHHTTTTSTTEEEEEEEEEEHHHHHHHHHHHH
T ss_pred eCCCCceEEEEeccCCcccCCcCcHHHhChhHHHHHHHHHHHhcCcCCCCeEEeCCCcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 799999999999999999999984
No 8
>COG0221 Ppa Inorganic pyrophosphatase [Energy production and conversion]
Probab=100.00 E-value=3e-55 Score=361.24 Aligned_cols=152 Identities=50% Similarity=0.849 Sum_probs=147.9
Q ss_pred CCCCCCCCCCCCCCeEEEEEEeCCCCC-------------CCcccccCCCCcccccccccccCCCCCccceEEecccccC
Q 029548 39 HPWHDLEIGPGAPKIFNCVIEIGKGSK-------------VDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVL 105 (191)
Q Consensus 39 spwhdip~~~~~p~~vn~vVEIPkgs~-------------~dR~~~~~~~yP~NYGfIP~T~~gDgDPLDvlvl~~~p~~ 105 (191)
|+||+||++++. ..+||+||||+||+ +||++++++.||+|||||||||++|||||||||+++.|+.
T Consensus 1 ~~~~~~~~~~~~-~~i~vviEIP~~s~~KyE~dk~~~~~~vdR~l~~~~~YP~NYGfiP~Tl~~DGDPlDvlVi~~~p~~ 79 (171)
T COG0221 1 MDLHKIPAGPDD-EDINVVIEIPKGSNIKYEVDKETGRLLVDRPLKTPMGYPVNYGFIPNTLSDDGDPLDVLVIGEEPLA 79 (171)
T ss_pred CCccccCCCCCc-ceEEEEEeccCCCccceEEeeecCceeeeecCCCCCcCCccccccCCcccCCCCceEEEEEcCcCCC
Confidence 679999999887 79999999999998 7899999999999999999999999999999999999999
Q ss_pred CeeEEEEEEeeeEeeEeCCCCceEEEEEecCCcCccCCCCCCCCChhHHHHHHHHHHHcccCC-CceeEeCcccCHHHHH
Q 029548 106 PGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDYKKNE-NKEVAVNDFLPASDAY 184 (191)
Q Consensus 106 pG~vv~vrviG~l~miD~ge~D~KiIaV~~~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~~e-gK~~~~~g~~~~~~A~ 184 (191)
||++++||+||+|+|+|+||.|||||||+..||+|++|++++|++.+++++|+|||++||.+| ||++++.||+|+++|+
T Consensus 80 pG~vi~~r~iG~l~m~D~~e~D~Kviav~~~dp~~~~i~di~d~~~~~~~~i~~ffe~yK~le~~k~~~~~gw~~~~~A~ 159 (171)
T COG0221 80 PGCVIQARPIGVLKMIDEGEKDDKVIAVPKLDPRYEHIKDISDLPEHLLDEIQHFFETYKDLEKGKWVKVEGWEDAEEAK 159 (171)
T ss_pred ceeEEEEEEEEEEEEeeCCCcceEEEEecCCCcchhhccchhHHHHHHHHHHHHHHHHHHhcCCCcEEEeccccCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 5899999999999999
Q ss_pred HHHHhhC
Q 029548 185 NSVQQSM 191 (191)
Q Consensus 185 ~vI~~~~ 191 (191)
++|++|+
T Consensus 160 ~~i~~~~ 166 (171)
T COG0221 160 KEIKEAI 166 (171)
T ss_pred HHHHHHH
Confidence 9999984
No 9
>KOG1626 consensus Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38 [Energy production and conversion]
Probab=100.00 E-value=3.3e-54 Score=371.73 Aligned_cols=176 Identities=39% Similarity=0.592 Sum_probs=156.7
Q ss_pred CCCCCCCCCceeeeeccccCCcccCCCCCCCCCCCCCCeEEEEEEeCCCCC------------------------CCccc
Q 029548 15 SQPPAHPPLNERILSSMSRRSVAAHPWHDLEIGPGAPKIFNCVIEIGKGSK------------------------VDRVL 70 (191)
Q Consensus 15 ~~~~~~~~~~~r~~~~~~~~~~~~spwhdip~~~~~p~~vn~vVEIPkgs~------------------------~dR~~ 70 (191)
-++|+.++++||+|. ....+..+|||||||+..+....+||++||||+++ .+|.+
T Consensus 6 ~e~g~~~s~~~rvy~-~~~~~~~iS~fhdipl~a~~~~~~nmvvEiPrwtnak~EIs~k~~~~pikqD~KkGklR~v~n~ 84 (279)
T KOG1626|consen 6 VETGKKYSLDYRVYF-PKLNGRIISPFHDIPLAAHPWHDLNMVVEIPRWTNAKMEISKKEPFNPIKQDKKKGKLRFVRNL 84 (279)
T ss_pred eeccccCCccceeee-cCCCCccccccccCccccCccccEeecccccceeeeEEEEeccCCCCcceeeccCCceEEEEec
Confidence 467888999999995 33455689999999999887789999999999998 34667
Q ss_pred ccCCCCcccccccccccC------------CCCCccceEEecccccCCeeEEEEEEeeeEeeEeCCCCceEEEEEecCCc
Q 029548 71 YSSVVYPHNYGFIPRTLC------------EDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDP 138 (191)
Q Consensus 71 ~~~~~yP~NYGfIP~T~~------------gDgDPLDvlvl~~~p~~pG~vv~vrviG~l~miD~ge~D~KiIaV~~~dp 138 (191)
|++..||||||||||||+ |||||||||+||+.+..+|++++||+||+|+||||||+|||||||+++||
T Consensus 85 fp~~gYiwNYGalPqTwedP~~~~~~t~~~gDnDPiDV~eIg~~~~~~G~vl~vKvLG~malIDeGE~DwKiIAIdvnDP 164 (279)
T KOG1626|consen 85 FPYKGYIWNYGALPQTWEDPNHVDPETKAKGDNDPIDVLEIGQEPVLPGCVLQVKVLGLMALIDEGETDWKIIAIDVNDP 164 (279)
T ss_pred ccccccccccccCcccccCCCcccccccccCCCCcceeeEecccccccccEEEEEeeeeeecccCCCccceEEEEECCCc
Confidence 888899999999999997 58899999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCCC---CChhHHHHHHHHHHHcccCCCce----eEeCcccCHHHHHHHHHhhC
Q 029548 139 EYRHYNDIKE---LPPHRLAEIRRFFEDYKKNENKE----VAVNDFLPASDAYNSVQQSM 191 (191)
Q Consensus 139 ~~~~i~di~D---l~~~~l~~i~~fF~~YK~~egK~----~~~~g~~~~~~A~~vI~~~~ 191 (191)
+++.++||+| ++|++|+++++||+.||.++||+ +..+.|.++++|+++|++|+
T Consensus 165 ~A~~~ndi~DV~~~~Pg~L~~tr~wFr~YKiPdGKpeN~faf~~~f~n~~~A~~iIk~t~ 224 (279)
T KOG1626|consen 165 LASEYNDIEDVEKLFPGLLEATRRWFRDYKIPDGKPENKFAFVGDFLNKKFALDIIKETH 224 (279)
T ss_pred chhhhccHHHHHHhCcchHHHHHHHHHHcCCCCCCCccchhhcccccChHHHHHHHHHHH
Confidence 6666666665 57999999999999999888775 55678999999999999985
No 10
>KOG1626 consensus Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38 [Energy production and conversion]
Probab=95.83 E-value=0.0082 Score=53.17 Aligned_cols=55 Identities=38% Similarity=0.584 Sum_probs=50.4
Q ss_pred ccCCCCcCCCCCCCCCCceeeeeccccCCcccCCCCCCCCCCCCCCeEEEEEEeC
Q 029548 7 ETSSKTPVSQPPAHPPLNERILSSMSRRSVAAHPWHDLEIGPGAPKIFNCVIEIG 61 (191)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~spwhdip~~~~~p~~vn~vVEIP 61 (191)
|+.++-..+-+.+..+++-|++++||++...+++||++....+.|...|+++||.
T Consensus 7 e~g~~~s~~~rvy~~~~~~~~iS~fhdipl~a~~~~~~nmvvEiPrwtnak~EIs 61 (279)
T KOG1626|consen 7 ETGKKYSLDYRVYFPKLNGRIISPFHDIPLAAHPWHDLNMVVEIPRWTNAKMEIS 61 (279)
T ss_pred eccccCCccceeeecCCCCccccccccCccccCccccEeecccccceeeeEEEEe
Confidence 4556666778889999999999999999999999999999999999999999998
No 11
>PF07177 Neuralized: Neuralized; InterPro: IPR006573 NEUZ is a domain of unknown function found in neuralized proteins, i.e. proteins involved in the specification of the neuroblast during cellular differentiation. ; PDB: 2YUE_A 2E63_A.
Probab=46.66 E-value=20 Score=25.34 Aligned_cols=22 Identities=9% Similarity=0.149 Sum_probs=15.8
Q ss_pred ceEEecccccCCeeEEEEEEee
Q 029548 95 DVLIIMQEPVLPGCFLRAKAIG 116 (191)
Q Consensus 95 Dvlvl~~~p~~pG~vv~vrviG 116 (191)
..||++++|+.+|+.+++|+.-
T Consensus 30 ~giVFS~rPl~~~E~~~v~I~~ 51 (69)
T PF07177_consen 30 NGIVFSSRPLRIGEKFEVRIDE 51 (69)
T ss_dssp S-EEEESS-B-TT-EEEEEEEE
T ss_pred ceEEEecCCccCCCEEEEEEEe
Confidence 4789999999999999999853
No 12
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=38.81 E-value=23 Score=24.97 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=20.4
Q ss_pred ccccccccCCCCCccceEEecccccCCeeEEEEEEeee
Q 029548 80 YGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGL 117 (191)
Q Consensus 80 YGfIP~T~~gDgDPLDvlvl~~~p~~pG~vv~vrviG~ 117 (191)
=||||.+-..++ ..+.+|+.+.|+++.+
T Consensus 30 ~Gfl~~~~~~~~----------~~~~~Gq~v~~~V~~v 57 (74)
T cd05694 30 TGFLPKKDAGNF----------SKLKVGQLLLCVVEKV 57 (74)
T ss_pred EEEEEHHHCCcc----------cccCCCCEEEEEEEEE
Confidence 377777754433 4578999999999863
No 13
>smart00588 NEUZ domain in neuralized proteins.
Probab=37.84 E-value=40 Score=26.27 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=31.3
Q ss_pred CCCccceEEecccccCCeeEEEEEEeeeEeeEeCCCCceEEEEEecCCcC
Q 029548 90 DNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPE 139 (191)
Q Consensus 90 DgDPLDvlvl~~~p~~pG~vv~vrviG~l~miD~ge~D~KiIaV~~~dp~ 139 (191)
+.+--+.+|++++|+.+|+.+.+|+.-.-..- .--==+++-..||.
T Consensus 26 ~~~f~~givFS~rPl~~~E~~~v~i~~~~~~w----~G~l~~G~Ts~dP~ 71 (123)
T smart00588 26 ASDFCNALVFSARPLRINELFEVKIEKVVRKW----SGALRFGVTTCDPA 71 (123)
T ss_pred cCCcCceEEecCCCCcCCCEEEEEEEEecCCc----cCceEEEEecCCcc
Confidence 44467889999999999999999987432110 11123566777885
No 14
>KOG1110 consensus Putative steroid membrane receptor Hpr6.6/25-Dx [General function prediction only]
Probab=36.09 E-value=20 Score=30.50 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=29.8
Q ss_pred eEEEEEecCCcCccCCCCCCCCChhHHHHHHHHHHHccc
Q 029548 128 DKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDYKK 166 (191)
Q Consensus 128 ~KiIaV~~~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~ 166 (191)
-+.||...-|. .+.+.|++||....++.+.+|...||.
T Consensus 108 SR~La~~s~d~-~d~~ddlsdL~a~e~eal~eWE~~fk~ 145 (183)
T KOG1110|consen 108 SRGLAKMSFDL-SDETDDLSDLTAEELEALNEWETKFKA 145 (183)
T ss_pred HHHHHhcccch-hhccccccccCHHHHHHHHHHHHHHhh
Confidence 45555555454 566788999999999999999999985
No 15
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=35.90 E-value=33 Score=22.55 Aligned_cols=39 Identities=23% Similarity=0.398 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHcccCC------C-----ceeEeCcccCHHHHHHHHHhh
Q 029548 152 HRLAEIRRFFEDYKKNE------N-----KEVAVNDFLPASDAYNSVQQS 190 (191)
Q Consensus 152 ~~l~~i~~fF~~YK~~e------g-----K~~~~~g~~~~~~A~~vI~~~ 190 (191)
...++|.+||..|-..+ + +...+..|.+.++|.++++..
T Consensus 10 ~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~ 59 (70)
T PF14259_consen 10 TTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELL 59 (70)
T ss_dssp --HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHC
Confidence 35688999999984321 1 345667899999999998753
No 16
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=33.94 E-value=19 Score=31.88 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=22.1
Q ss_pred CccCCCCCCCCChhHHHHHHHHHHHc
Q 029548 139 EYRHYNDIKELPPHRLAEIRRFFEDY 164 (191)
Q Consensus 139 ~~~~i~di~Dl~~~~l~~i~~fF~~Y 164 (191)
-|--++|+++||.-+-+.+++||+.-
T Consensus 238 Yy~~~~~~~~lp~~l~~~lrqwf~~~ 263 (266)
T cd01460 238 YYVIVRDLNQLPSVLSDALRQWFELV 263 (266)
T ss_pred eEEEecChhHhHHHHHHHHHHHHHHH
Confidence 35558899999999999999999864
No 17
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=31.77 E-value=24 Score=29.54 Aligned_cols=23 Identities=52% Similarity=0.801 Sum_probs=16.2
Q ss_pred EEEeCCCCC-------CCcccccCCCCccccc
Q 029548 57 VIEIGKGSK-------VDRVLYSSVVYPHNYG 81 (191)
Q Consensus 57 vVEIPkgs~-------~dR~~~~~~~yP~NYG 81 (191)
||=|||||. --|++| ..||+|+-
T Consensus 145 vifiPKgssIefst~gea~fly--vtyPanWq 174 (176)
T COG4766 145 VIFIPKGSSIEFSTTGEAKFLY--VTYPANWQ 174 (176)
T ss_pred EEEecCCCeEEEeccceEEEEE--EEcccccc
Confidence 344999998 235554 67999974
No 18
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=28.32 E-value=1.4e+02 Score=21.96 Aligned_cols=45 Identities=4% Similarity=0.185 Sum_probs=31.6
Q ss_pred CCCCChhHHHHHHHHHHHcccCCCce---eEeCcc------cCHHHHHHHHHhh
Q 029548 146 IKELPPHRLAEIRRFFEDYKKNENKE---VAVNDF------LPASDAYNSVQQS 190 (191)
Q Consensus 146 i~Dl~~~~l~~i~~fF~~YK~~egK~---~~~~g~------~~~~~A~~vI~~~ 190 (191)
+..++...|+.|.+|..+++.-.+.. ..+..| .+.+.+.++|.+|
T Consensus 46 l~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~~F~~~d~~~l~dLl~AA 99 (104)
T smart00512 46 LPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDAEFLKIDQETLFELILAA 99 (104)
T ss_pred CCCcCHHHHHHHHHHHHHcccCCCCccccccccHHHHHHHcCCHHHHHHHHHHH
Confidence 55577899999999999988654321 112334 5777888888776
No 19
>smart00362 RRM_2 RNA recognition motif.
Probab=27.63 E-value=1e+02 Score=18.96 Aligned_cols=37 Identities=19% Similarity=0.388 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHcccCC------C----ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE------N----KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e------g----K~~~~~g~~~~~~A~~vI~~ 189 (191)
..++|++||+.|-... . +...+..|.+.+.|.+.++.
T Consensus 12 ~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~ 58 (72)
T smart00362 12 TEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEA 58 (72)
T ss_pred CHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHH
Confidence 4678999999985321 1 23455678888888888764
No 20
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=25.53 E-value=24 Score=28.98 Aligned_cols=23 Identities=43% Similarity=0.579 Sum_probs=12.3
Q ss_pred EEeCCCCC-----CCcccccCCCCcccc
Q 029548 58 IEIGKGSK-----VDRVLYSSVVYPHNY 80 (191)
Q Consensus 58 VEIPkgs~-----~dR~~~~~~~yP~NY 80 (191)
+=||+||. -+...+....||+|+
T Consensus 123 i~iPkGs~I~fst~~~a~~~Yv~yPa~W 150 (152)
T PF06249_consen 123 IFIPKGSTITFSTPDYARFFYVTYPANW 150 (152)
T ss_dssp EEE-TT-EEEEEEEEEEEEEEEEESTT-
T ss_pred EEECCCCEEEEecCCCEEEEEEECCCcc
Confidence 44899987 233333346799987
No 21
>PF05182 Fip1: Fip1 motif; InterPro: IPR007854 This short motif is about 40 amino acids in length and is found in the Fip1 protein that is a component of a Saccharomyces cerevisiae pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase []. This region of Fip1 is needed for the interaction with the Yth1 subunit of the complex and for specific polyadenylation of the cleaved mRNA precursor [].
Probab=24.85 E-value=21 Score=23.78 Aligned_cols=10 Identities=50% Similarity=0.800 Sum_probs=9.2
Q ss_pred cccccccccc
Q 029548 78 HNYGFIPRTL 87 (191)
Q Consensus 78 ~NYGfIP~T~ 87 (191)
|||||=..||
T Consensus 24 FNYGf~E~tW 33 (45)
T PF05182_consen 24 FNYGFNEETW 33 (45)
T ss_pred cCCCCCHHHH
Confidence 8999999987
No 22
>smart00360 RRM RNA recognition motif.
Probab=24.84 E-value=1.6e+02 Score=17.80 Aligned_cols=37 Identities=27% Similarity=0.436 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHcccCC------C------ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE------N------KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e------g------K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-+.|++||+.|-... . +...+..|.+.+.|.++++.
T Consensus 9 ~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~ 57 (71)
T smart00360 9 TEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEA 57 (71)
T ss_pred CHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHH
Confidence 4567889998876321 1 22455678889999888763
No 23
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=24.81 E-value=92 Score=19.81 Aligned_cols=37 Identities=30% Similarity=0.469 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHcccCC---------C--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE---------N--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e---------g--K~~~~~g~~~~~~A~~vI~~ 189 (191)
..++|+++|..|-... + +...+..|.+.++|.+++++
T Consensus 11 t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~ 58 (70)
T PF00076_consen 11 TEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEE 58 (70)
T ss_dssp SHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHH
Confidence 5688999999987652 2 22455678888888888875
No 24
>PTZ00162 DNA-directed RNA polymerase II subunit 7; Provisional
Probab=22.91 E-value=1.9e+02 Score=23.90 Aligned_cols=61 Identities=20% Similarity=0.195 Sum_probs=35.8
Q ss_pred cccccccccccCCCCCccc-----eEEec---ccccCCeeEEEEEEeeeEeeEeCCCCceEEEEEecCCcCccCC
Q 029548 77 PHNYGFIPRTLCEDNDPLD-----VLIIM---QEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHY 143 (191)
Q Consensus 77 P~NYGfIP~T~~gDgDPLD-----vlvl~---~~p~~pG~vv~vrviG~l~miD~ge~D~KiIaV~~~dp~~~~i 143 (191)
|++ +|||..+-.|+---| -+..+ ...+..|+.+++|++|+- .|++ +-+.++ ...+|-...+
T Consensus 103 p~~-ifI~~~~l~~~~~fd~~~~~~~~~~~~~~~~i~~g~~VR~rV~~v~--~~~~--~~~~i~-T~~~~~LG~~ 171 (176)
T PTZ00162 103 PLK-AFVSRSAIPPDFVYDSDSAYPCYISSDGQIQIKPNTEVRLRLQGVR--YDAS--NLFAIA-TINSDYLGPI 171 (176)
T ss_pred CeE-EEEcHHHCCCccEECCCCCcceEecCCCcEEECCCCEEEEEEEEEE--ecCC--CcEEEE-EecCCCcCcc
Confidence 788 888877643221111 12222 245788999999999994 3443 356776 4445543433
No 25
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=22.77 E-value=1.1e+02 Score=28.31 Aligned_cols=61 Identities=20% Similarity=0.264 Sum_probs=45.1
Q ss_pred CCcccccCCCCccccccccc-------------ccC-------CCCCccceEEecccccCCeeEEEEEEeeeEeeEeCCC
Q 029548 66 VDRVLYSSVVYPHNYGFIPR-------------TLC-------EDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGE 125 (191)
Q Consensus 66 ~dR~~~~~~~yP~NYGfIP~-------------T~~-------gDgDPLDvlvl~~~p~~pG~vv~vrviG~l~miD~ge 125 (191)
++|..+++..+-.+=|.|+. ||+ -.|-|+++..+..+ .|..+-. .|+|--.++|.
T Consensus 83 ~gr~~f~sv~f~~~egw~vGe~sqll~T~DgGqsWARi~~~e~~eg~~~sI~f~d~q---~g~m~gd--~Gail~T~DgG 157 (339)
T COG4447 83 LGRHAFHSVSFLGMEGWIVGEPSQLLHTTDGGQSWARIPLSEKLEGFPDSITFLDDQ---RGEMLGD--QGAILKTTDGG 157 (339)
T ss_pred hhhhheeeeeeecccccccCCcceEEEecCCCcchhhchhhcCCCCCcceeEEecch---hhhhhcc--cceEEEecCCc
Confidence 34666677777667788874 343 47899999999873 5665555 88998899999
Q ss_pred CceEEE
Q 029548 126 KDDKII 131 (191)
Q Consensus 126 ~D~KiI 131 (191)
..||=+
T Consensus 158 k~Wk~l 163 (339)
T COG4447 158 KNWKAL 163 (339)
T ss_pred ccHhHh
Confidence 999876
No 26
>PF08437 Glyco_transf_8C: Glycosyl transferase family 8 C-terminal; InterPro: IPR013645 This domain is found at the C terminus of bacterial glucosyltransferase and galactosyltransferase proteins. ; GO: 0008918 lipopolysaccharide 3-alpha-galactosyltransferase activity, 0009103 lipopolysaccharide biosynthetic process
Probab=22.72 E-value=40 Score=23.07 Aligned_cols=12 Identities=25% Similarity=0.717 Sum_probs=10.1
Q ss_pred cccCCCCCCCCC
Q 029548 36 VAAHPWHDLEIG 47 (191)
Q Consensus 36 ~~~spwhdip~~ 47 (191)
...|||.|+|+-
T Consensus 11 ~~~SPWk~~pl~ 22 (57)
T PF08437_consen 11 YKNSPWKDIPLL 22 (57)
T ss_pred HHcCCCCCCCCc
Confidence 467999999985
No 27
>PF07469 DUF1518: Domain of unknown function (DUF1518) ; InterPro: IPR010011 This domain, which is usually found tandemly repeated, is found various receptor co-activating proteins.; GO: 0005634 nucleus
Probab=22.41 E-value=45 Score=23.37 Aligned_cols=14 Identities=36% Similarity=0.767 Sum_probs=11.5
Q ss_pred CCCCcccccccccc
Q 029548 73 SVVYPHNYGFIPRT 86 (191)
Q Consensus 73 ~~~yP~NYGfIP~T 86 (191)
-+.||-|||..+|+
T Consensus 18 qFpyppnyGm~qq~ 31 (58)
T PF07469_consen 18 QFPYPPNYGMSQQP 31 (58)
T ss_pred ccccCCCCCccCCC
Confidence 35788899999887
Done!