Query 029548
Match_columns 191
No_of_seqs 145 out of 1032
Neff 5.1
Searched_HMMs 29240
Date Tue Mar 26 00:17:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029548.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029548hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q46_A TT-ippase; inorganic py 100.0 1.2E-66 4.2E-71 430.0 11.1 154 38-191 1-167 (178)
2 3gvf_A Inorganic pyrophosphata 100.0 5E-65 1.7E-69 425.6 14.8 160 32-191 15-191 (196)
3 3fq3_A Inorganic pyrophosphata 100.0 1.7E-64 5.7E-69 422.7 16.0 160 32-191 15-191 (197)
4 2prd_A Pyrophosphate phosphohy 100.0 1.6E-64 5.3E-69 416.2 15.7 153 39-191 1-169 (174)
5 3ld3_A Inorganic pyrophosphata 100.0 4.3E-64 1.5E-68 420.7 14.6 160 32-191 15-191 (199)
6 3d53_A Inorganic pyrophosphata 100.0 2.1E-63 7.2E-68 409.1 14.9 152 39-191 2-170 (173)
7 2au7_A Inorganic pyrophosphata 100.0 4.6E-63 1.6E-67 407.8 15.2 152 40-191 1-169 (175)
8 2bqx_A Inorganic pyrophosphata 100.0 1.1E-62 3.7E-67 404.9 13.8 152 39-191 1-168 (173)
9 1e9g_A Ppase, inorganic pyroph 100.0 3.1E-63 1.1E-67 434.6 9.6 175 15-191 5-223 (286)
10 3tr4_A Inorganic pyrophosphata 100.0 6.5E-62 2.2E-66 401.8 13.7 149 42-191 6-171 (178)
11 1qez_A Ppase, S-ppase, protein 100.0 5E-61 1.7E-65 395.0 15.0 149 43-191 2-166 (173)
12 1sxv_A Inorganic pyrophosphata 100.0 1.8E-59 6.3E-64 385.3 14.4 140 52-191 11-164 (172)
13 2dha_A FLJ20171 protein; RRM d 42.5 26 0.00089 25.7 3.9 38 152-189 35-87 (123)
14 2cqh_A IGF-II mRNA-binding pro 39.9 31 0.0011 22.9 3.7 37 153-189 21-63 (93)
15 2cqb_A Peptidyl-prolyl CIS-tra 39.6 28 0.00096 23.5 3.5 37 153-189 25-73 (102)
16 1why_A Hypothetical protein ri 38.8 21 0.00071 24.1 2.7 37 153-189 30-72 (97)
17 3bs9_A Nucleolysin TIA-1 isofo 37.9 28 0.00095 22.6 3.2 37 153-189 19-67 (87)
18 2ku7_A MLL1 PHD3-CYP33 RRM chi 37.8 33 0.0011 24.4 3.8 37 153-189 76-124 (140)
19 2dgt_A RNA-binding protein 30; 37.7 38 0.0013 22.4 3.9 37 153-189 23-63 (92)
20 1jo6_A KCNMB2, potassium large 37.6 6.1 0.00021 25.4 -0.3 21 76-96 2-33 (45)
21 2hzc_A Splicing factor U2AF 65 37.4 36 0.0012 22.0 3.7 35 153-187 19-70 (87)
22 1x5s_A Cold-inducible RNA-bind 36.8 43 0.0015 22.5 4.1 37 153-189 25-73 (102)
23 2e5j_A Methenyltetrahydrofolat 36.4 45 0.0015 22.4 4.1 37 153-189 32-75 (97)
24 2cpy_A RNA-binding protein 12; 35.8 23 0.0008 24.8 2.6 37 153-189 28-76 (114)
25 1iqt_A AUF1, heterogeneous nuc 35.1 34 0.0012 21.6 3.2 37 153-189 12-60 (75)
26 2cqc_A Arginine/serine-rich sp 34.0 36 0.0012 22.5 3.3 37 153-189 28-76 (95)
27 1wf1_A RNA-binding protein RAL 33.5 24 0.00083 24.4 2.4 37 153-189 41-81 (110)
28 3mdf_A Peptidyl-prolyl CIS-tra 33.3 30 0.001 22.4 2.7 37 153-189 20-68 (85)
29 2x1f_A MRNA 3'-END-processing 33.0 44 0.0015 22.3 3.6 37 153-189 15-63 (96)
30 1x5t_A Splicing factor 3B subu 32.7 51 0.0018 21.8 3.9 37 153-189 18-67 (96)
31 2ywk_A Putative RNA-binding pr 32.3 33 0.0011 22.7 2.9 37 153-189 29-76 (95)
32 2hvz_A Splicing factor, argini 32.3 56 0.0019 21.9 4.1 37 153-189 13-56 (101)
33 2dgs_A DAZ-associated protein 32.2 34 0.0012 23.0 2.9 36 153-188 23-70 (99)
34 1uaw_A Mouse-musashi-1; RNP-ty 32.0 36 0.0012 21.5 2.9 37 153-189 13-61 (77)
35 2dh8_A DAZ-associated protein 31.9 31 0.001 23.5 2.7 38 152-189 28-77 (105)
36 2cqd_A RNA-binding region cont 31.9 44 0.0015 23.2 3.6 37 153-189 30-78 (116)
37 2dgp_A Bruno-like 4, RNA bindi 31.8 56 0.0019 22.1 4.0 37 153-189 26-74 (106)
38 2mss_A Protein (musashi1); RNA 31.5 52 0.0018 20.7 3.6 36 153-188 12-59 (75)
39 3p5t_L Cleavage and polyadenyl 31.4 45 0.0016 22.1 3.4 37 153-189 14-64 (90)
40 3md1_A Nuclear and cytoplasmic 30.9 37 0.0013 21.8 2.8 37 153-189 14-62 (83)
41 2dgw_A Probable RNA-binding pr 30.9 36 0.0012 22.4 2.8 36 153-188 23-68 (91)
42 1whw_A Hypothetical protein ri 30.8 56 0.0019 21.8 3.9 37 153-189 21-69 (99)
43 2cqg_A TDP-43, TAR DNA-binding 30.8 39 0.0013 22.9 3.0 37 153-189 28-76 (103)
44 2dgu_A Heterogeneous nuclear r 30.6 37 0.0013 23.1 2.9 37 153-189 24-64 (103)
45 2xnq_A Nuclear polyadenylated 30.5 36 0.0012 23.2 2.8 37 153-189 36-76 (97)
46 2la6_A RNA-binding protein FUS 30.4 37 0.0013 22.9 2.8 37 153-189 26-82 (99)
47 2fc9_A NCL protein; structure 30.4 29 0.001 23.4 2.3 37 153-189 28-72 (101)
48 1x4a_A Splicing factor, argini 30.3 47 0.0016 22.7 3.4 37 153-189 35-80 (109)
49 2cpd_A Apobec-1 stimulating pr 30.2 40 0.0014 22.7 3.0 37 153-189 28-70 (99)
50 2kvi_A Nuclear polyadenylated 30.0 36 0.0012 22.9 2.8 37 153-189 24-64 (96)
51 1x4b_A Heterogeneous nuclear r 30.0 39 0.0013 23.5 3.0 37 153-189 40-88 (116)
52 2ek1_A RNA-binding protein 12; 29.9 32 0.0011 22.8 2.5 37 153-189 28-76 (95)
53 1x5u_A Splicing factor 3B subu 29.8 45 0.0015 22.5 3.3 37 153-189 28-76 (105)
54 2dnz_A Probable RNA-binding pr 29.8 49 0.0017 21.8 3.4 37 153-189 18-66 (95)
55 2cph_A RNA binding motif prote 29.8 58 0.002 22.0 3.8 37 153-189 28-77 (107)
56 2la4_A Nuclear and cytoplasmic 29.5 58 0.002 21.9 3.8 37 153-189 40-82 (101)
57 2diu_A KIAA0430 protein; struc 29.5 39 0.0013 24.6 2.9 37 152-189 25-65 (96)
58 2kxn_B Transformer-2 protein h 29.1 48 0.0016 24.0 3.5 37 153-189 59-107 (129)
59 2dnp_A RNA-binding protein 14; 29.0 43 0.0015 22.1 3.0 37 153-189 22-62 (90)
60 2cpj_A Non-POU domain-containi 28.8 32 0.0011 23.2 2.3 37 153-189 28-70 (99)
61 1whx_A Hypothetical protein ri 28.8 52 0.0018 23.0 3.5 37 153-189 23-65 (111)
62 2cqp_A RNA-binding protein 12; 28.2 36 0.0012 22.7 2.5 37 153-189 28-76 (98)
63 2div_A TRNA selenocysteine ass 27.9 66 0.0022 21.4 3.8 37 153-189 22-71 (99)
64 2dgo_A Cytotoxic granule-assoc 27.4 49 0.0017 22.8 3.2 37 153-189 28-76 (115)
65 2cqi_A Nucleolysin TIAR; RNA r 27.4 51 0.0017 22.2 3.2 37 153-189 28-74 (103)
66 2do0_A HnRNP M, heterogeneous 27.3 42 0.0014 23.1 2.7 37 153-189 28-75 (114)
67 2ad9_A Polypyrimidine tract-bi 27.2 44 0.0015 24.6 3.0 37 153-189 44-86 (119)
68 2cq2_A Hypothetical protein LO 27.1 43 0.0015 24.6 2.9 37 153-189 40-82 (114)
69 1p27_B RNA-binding protein 8A; 26.7 53 0.0018 22.2 3.2 37 153-189 36-84 (106)
70 2khc_A Testis-specific RNP-typ 26.7 39 0.0013 23.5 2.5 37 153-189 53-101 (118)
71 2jvr_A Nucleolar protein 3; RN 26.5 66 0.0022 23.0 3.8 37 153-189 41-86 (111)
72 2dgv_A HnRNP M, heterogeneous 26.4 60 0.002 21.2 3.3 37 153-189 21-67 (92)
73 1x4g_A Nucleolysin TIAR; struc 26.4 60 0.002 22.2 3.4 37 153-189 38-80 (109)
74 1fj7_A Nucleolin RBD1, protein 26.3 61 0.0021 21.7 3.4 36 153-188 30-76 (101)
75 2cpz_A CUG triplet repeat RNA- 26.0 55 0.0019 22.6 3.2 37 153-189 38-86 (115)
76 2ytc_A PRE-mRNA-splicing facto 25.9 43 0.0015 21.6 2.5 37 153-189 25-67 (85)
77 1vcb_B Protein (elongin C); tu 25.6 68 0.0023 23.4 3.7 45 146-190 62-107 (112)
78 1x5p_A Negative elongation fac 25.4 50 0.0017 22.1 2.8 37 153-189 26-68 (97)
79 1oo0_B CG8781-PA, drosophila Y 25.3 65 0.0022 22.0 3.4 37 153-189 39-87 (110)
80 1sjq_A Polypyrimidine tract-bi 25.3 55 0.0019 23.6 3.1 37 153-189 29-71 (105)
81 1x4h_A RNA-binding protein 28; 24.9 72 0.0025 21.6 3.6 37 153-189 28-76 (111)
82 2dnq_A RNA-binding protein 4B; 24.6 44 0.0015 22.0 2.3 37 153-189 21-61 (90)
83 2cpe_A RNA-binding protein EWS 24.6 61 0.0021 22.2 3.2 37 153-189 28-84 (113)
84 2krb_A Eukaryotic translation 24.5 81 0.0028 20.3 3.6 37 153-189 20-66 (81)
85 4fxv_A ELAV-like protein 1; RN 24.5 65 0.0022 22.1 3.3 37 153-189 32-80 (99)
86 1wex_A Hypothetical protein (r 24.2 43 0.0015 23.6 2.3 37 153-189 28-70 (104)
87 2lxi_A RNA-binding protein 10; 23.9 1E+02 0.0035 20.6 4.2 37 153-189 14-63 (91)
88 1fjc_A Nucleolin RBD2, protein 23.6 37 0.0013 22.6 1.8 37 153-189 29-72 (96)
89 2jwn_A Embryonic polyadenylate 23.5 77 0.0026 22.0 3.6 35 153-187 49-95 (124)
90 1wg1_A KIAA1579 protein, homol 23.4 47 0.0016 21.9 2.3 36 153-189 18-59 (88)
91 2db1_A Heterogeneous nuclear r 23.2 62 0.0021 22.9 3.0 37 152-188 29-79 (118)
92 2fy1_A RNA-binding motif prote 23.1 92 0.0031 21.8 4.0 37 153-189 20-67 (116)
93 2kt5_A RNA and export factor-b 22.9 88 0.003 21.9 3.8 37 153-189 48-95 (124)
94 3s7r_A Heterogeneous nuclear r 22.8 52 0.0018 21.4 2.4 37 153-189 24-72 (87)
95 2rs2_A Musashi-1, RNA-binding 22.7 61 0.0021 22.5 2.9 37 153-189 38-86 (109)
96 3mab_A Uncharacterized protein 22.5 46 0.0016 23.9 2.2 21 146-166 67-87 (93)
97 2err_A Ataxin-2-binding protei 22.4 65 0.0022 22.3 3.0 37 153-189 42-88 (109)
98 2fc8_A NCL protein; structure 22.3 41 0.0014 22.6 1.8 37 153-189 28-73 (102)
99 2hgm_A HNRPF protein, heteroge 22.1 36 0.0012 25.2 1.6 38 152-189 54-103 (126)
100 2dis_A Unnamed protein product 22.0 99 0.0034 20.9 3.9 37 153-189 21-71 (109)
101 2dhg_A TRNA selenocysteine ass 21.6 95 0.0033 20.8 3.7 37 153-189 22-70 (104)
102 1x4e_A RNA binding motif, sing 21.6 44 0.0015 21.6 1.8 37 153-189 18-66 (85)
103 2jrs_A RNA-binding protein 39; 21.4 53 0.0018 22.8 2.3 37 153-189 39-87 (108)
104 3cx5_B Cytochrome B-C1 complex 21.4 98 0.0033 25.1 4.3 43 146-189 145-188 (352)
105 2yue_A Protein neuralized; str 21.2 51 0.0017 26.0 2.4 39 94-139 35-76 (168)
106 2e5h_A Zinc finger CCHC-type a 21.2 65 0.0022 21.1 2.7 38 152-189 28-77 (94)
107 1p1t_A Cleavage stimulation fa 21.1 88 0.003 20.9 3.4 37 153-189 21-69 (104)
108 3ucg_A Polyadenylate-binding p 21.1 85 0.0029 20.2 3.2 35 153-187 19-65 (89)
109 3egn_A RNA-binding protein 40; 20.9 90 0.0031 22.4 3.6 37 153-189 58-111 (143)
110 2dit_A HIV TAT specific factor 20.9 1.2E+02 0.0041 20.9 4.2 38 152-189 38-83 (112)
111 2cq3_A RNA-binding protein 9; 20.8 53 0.0018 22.2 2.2 37 153-189 28-74 (103)
112 2kn4_A Immunoglobulin G-bindin 20.8 99 0.0034 22.4 3.8 37 153-189 83-131 (158)
113 2d9o_A DNAJ (HSP40) homolog, s 20.7 90 0.0031 21.9 3.4 38 152-189 29-73 (100)
114 2cpx_A Hypothetical protein FL 20.7 90 0.0031 21.3 3.4 37 153-189 38-86 (115)
115 1u6f_A Tcubp1, RNA-binding pro 20.6 73 0.0025 22.7 3.0 37 153-189 55-103 (139)
116 2dnn_A RNA-binding protein 12; 20.6 76 0.0026 22.5 3.1 37 152-188 28-74 (109)
117 4ajy_C Transcription elongatio 20.3 77 0.0026 22.0 3.0 45 146-190 47-92 (97)
118 2bz2_A Negative elongation fac 20.3 77 0.0026 22.6 3.1 37 153-189 50-92 (121)
119 4a8x_A RNA-binding protein wit 20.2 65 0.0022 20.7 2.4 37 153-189 17-66 (88)
120 2wbr_A GW182, gawky, LD47780P; 20.0 95 0.0033 22.1 3.4 35 155-189 22-62 (89)
No 1
>3q46_A TT-ippase; inorganic pyrophosphatase, hydrolase; HET: EPE; 0.99A {Thermococcus thioreducens} SCOP: b.40.5.1 PDB: 3r6e_A* 3q3l_A 3i98_A 3q4w_A 3q9m_A* 3r5u_A 3r5v_A* 3q5v_A* 1ude_A 1twl_A
Probab=100.00 E-value=1.2e-66 Score=430.04 Aligned_cols=154 Identities=41% Similarity=0.792 Sum_probs=150.0
Q ss_pred cCCCCCCCCCCCCCCeEEEEEEeCCCCC-------------CCcccccCCCCcccccccccccCCCCCccceEEeccccc
Q 029548 38 AHPWHDLEIGPGAPKIFNCVIEIGKGSK-------------VDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPV 104 (191)
Q Consensus 38 ~spwhdip~~~~~p~~vn~vVEIPkgs~-------------~dR~~~~~~~yP~NYGfIP~T~~gDgDPLDvlvl~~~p~ 104 (191)
+||||+||++.+.|+.+|||||||+||+ +||++++++.||||||||||||++||||||||||++.|+
T Consensus 1 ~spwhdi~~g~~~p~~~nvvIEIP~gs~~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl~~~~~ 80 (178)
T 3q46_A 1 MNPFHELEPGPEVPEVVYALIEIPKGSRNKYELDKATGLLKLDRVLYSPFFYPVDYGIIPQTWYDDGDPFDIMVIMREPV 80 (178)
T ss_dssp CCTTTTSCSCSBTTTBCCCEEEECTTCCEEEEECTTTSCEEEEEECSSSCCCSSEEEECTTCCBTTTBCCEEEECCSSCC
T ss_pred CCccccCCCCCCCCCEEEEEEEECCCCCeeEEECCCCCCEEEeecccCCCCCCcccccCCCccCCCCCeeEEEEEcCCCC
Confidence 6999999999999999999999999998 689999999999999999999999999999999999999
Q ss_pred CCeeEEEEEEeeeEeeEeCCCCceEEEEEecCCcCccCCCCCCCCChhHHHHHHHHHHHcccCCCceeEeCcccCHHHHH
Q 029548 105 LPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDYKKNENKEVAVNDFLPASDAY 184 (191)
Q Consensus 105 ~pG~vv~vrviG~l~miD~ge~D~KiIaV~~~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~~egK~~~~~g~~~~~~A~ 184 (191)
.||++++||+||+|+|+|+||.|||||||+++||+|++++|++||+++++++|+|||++||.+|||++++.||.|+++|+
T Consensus 81 ~pG~vi~~r~iGvl~m~Dege~D~KiiaV~~~Dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~legK~v~~~g~~~~~~A~ 160 (178)
T 3q46_A 81 YPLTIIEARPIGIMKMEDSGDKDWKVLAVPVEDPYFNDWKDISDVPKAFLDEIAHFFQRYKELQGKTTKIEGWGNAEEAK 160 (178)
T ss_dssp CTTCBC-CEEEEEEEEEETTEECCEEEEECTTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTGGGTCCEEEEEEEEHHHHH
T ss_pred CCceEEEEEEEEEEEeecCCCccceEEEeeCCCccccccCChHHCCHHHHHHHHHHHHHhcCcCCCceEeccccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhC
Q 029548 185 NSVQQSM 191 (191)
Q Consensus 185 ~vI~~~~ 191 (191)
++|++|+
T Consensus 161 ~~I~~~~ 167 (178)
T 3q46_A 161 REILRAI 167 (178)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999984
No 2
>3gvf_A Inorganic pyrophosphatase; structural genomics, hydrolase, S structural genomics center for infectious disease, ssgcid; HET: PGE; 1.75A {Burkholderia pseudomallei 1710B} PDB: 3d63_A* 3eiy_A 3ej0_A* 3ej2_A* 3eiz_A*
Probab=100.00 E-value=5e-65 Score=425.57 Aligned_cols=160 Identities=35% Similarity=0.606 Sum_probs=149.0
Q ss_pred ccCCcccCCCCCCCCCCCCCCeEEEEEEeCCCCC--------------CCcccccCCCCcccccccccccCCCCCccceE
Q 029548 32 SRRSVAAHPWHDLEIGPGAPKIFNCVIEIGKGSK--------------VDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVL 97 (191)
Q Consensus 32 ~~~~~~~spwhdip~~~~~p~~vn~vVEIPkgs~--------------~dR~~~~~~~yP~NYGfIP~T~~gDgDPLDvl 97 (191)
+.+|.++|+||+||++.+.|+.||||||||+||+ +||++++++.||||||||||||+|||||||||
T Consensus 15 ~~~g~~~m~~~~i~~g~~~p~~vnvvIEIP~gs~~~KyE~dk~~g~i~~DR~l~s~~~YP~NYGfIP~Tl~~DgDPLDvl 94 (196)
T 3gvf_A 15 QTQGPGSMSFSNVPAGKDLPQDFNVIIEIPAQSEPVKYEADKALGLLVVDRFIGTGMRYPVNYGFIPQTLSGDGDPVDVL 94 (196)
T ss_dssp --------CGGGSCSCSBTTTBEEEEEEECTTCCSEEEEEETTTTEEEEEEECTTCCCCSSEEEECTTCCCTTSSCCEEE
T ss_pred cccCCCCCchhhCCCCCCCCCEEEEEEEecCCCCceEEEEecCCCCEEEEeEcCCCccCCcccccccCccCCCCCceEEE
Confidence 4689999999999999999999999999999996 68999999999999999999999999999999
Q ss_pred EecccccCCeeEEEEEEeeeEeeEeCCCCceEEEEEecCC--cCccCCCCCCCCChhHHHHHHHHHHHcccCC-CceeEe
Q 029548 98 IIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADD--PEYRHYNDIKELPPHRLAEIRRFFEDYKKNE-NKEVAV 174 (191)
Q Consensus 98 vl~~~p~~pG~vv~vrviG~l~miD~ge~D~KiIaV~~~d--p~~~~i~di~Dl~~~~l~~i~~fF~~YK~~e-gK~~~~ 174 (191)
||++.|+.||++++||+||+|+|+|+||.|||||||+++| |+|++|+|++|||++++++|+|||++||.+| ||++++
T Consensus 95 vl~~~p~~pG~vi~~r~iGvl~M~Dege~D~KIIaVp~~d~~p~~~~i~di~dlp~~~l~~I~~fF~~YK~le~gK~v~v 174 (196)
T 3gvf_A 95 VITPFPLLAGSVVRARALGMLKMTDESGVDAKLVAVPHDKVCPMTANLKSIDDVPAYLKDQIKHFFEQYKALEKGKWVKV 174 (196)
T ss_dssp ECCSSCCCTTCEEEEEEEEEEEEEETTEEEEEEEEEECTTTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEE
T ss_pred EecCCccCCeeEEEEEEEEEEEEecCCCcccEEEEEecCCcCchhhhcCchhhCCHHHHHHHHHHHHHhcCcCCCCeEEe
Confidence 9999999999999999999999999999999999999998 9999999999999999999999999999999 999999
Q ss_pred CcccCHHHHHHHHHhhC
Q 029548 175 NDFLPASDAYNSVQQSM 191 (191)
Q Consensus 175 ~g~~~~~~A~~vI~~~~ 191 (191)
.||.|+++|+++|++|+
T Consensus 175 ~gw~~~~~A~~~I~~~~ 191 (196)
T 3gvf_A 175 EGWDGIDAAHKEITDGV 191 (196)
T ss_dssp EEEECHHHHHHHHHHHH
T ss_pred ccCcCHHHHHHHHHHHH
Confidence 99999999999999984
No 3
>3fq3_A Inorganic pyrophosphatase:bacterial/archaeal INOR pyrophosphatase; ssgcid, inorganic phosphatase; 1.90A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3sw5_A
Probab=100.00 E-value=1.7e-64 Score=422.73 Aligned_cols=160 Identities=36% Similarity=0.674 Sum_probs=149.2
Q ss_pred ccCCcccCCCCCCCCCCCCCCeEEEEEEeCCC-CC-------------CCcccccCCCCcccccccccccCCCCCccceE
Q 029548 32 SRRSVAAHPWHDLEIGPGAPKIFNCVIEIGKG-SK-------------VDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVL 97 (191)
Q Consensus 32 ~~~~~~~spwhdip~~~~~p~~vn~vVEIPkg-s~-------------~dR~~~~~~~yP~NYGfIP~T~~gDgDPLDvl 97 (191)
+..|.++|+||+||++++.|+.||||||||+| |+ +||++++++.||||||||||||+|||||||||
T Consensus 15 ~~~g~~im~~~~ip~g~~~p~~vnvvIEIP~g~s~~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPLDvl 94 (197)
T 3fq3_A 15 QTQGPGSMNIDAISIGSNPPEDVNVIIEVPVGGQPIKYEMDKKAGALIVDRFLYTPMTYPGNYGFVPHTLSEDGDPIDVL 94 (197)
T ss_dssp -------CCGGGSCSCSSTTSCEEEEEEECTTCCSEEEEEETTTTEEEEEEECCSSBCCSSEEEECTTCCCTTSSCCEEE
T ss_pred ccCCCCcCCHHHCCCCCCCCCEEEEEEEecCCCCCEeEEEecCCCCEEEEeecCCCCcCCcccccccCcccCCCCceEEE
Confidence 45889999999999999999999999999996 76 79999999999999999999999999999999
Q ss_pred EecccccCCeeEEEEEEeeeEeeEeCCCCceEEEEEecC--CcCccCCCCCCCCChhHHHHHHHHHHHcccCC-CceeEe
Q 029548 98 IIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYRHYNDIKELPPHRLAEIRRFFEDYKKNE-NKEVAV 174 (191)
Q Consensus 98 vl~~~p~~pG~vv~vrviG~l~miD~ge~D~KiIaV~~~--dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~~e-gK~~~~ 174 (191)
||++.|+.||++++||+||+|+|+|+||.|||||||+++ ||+|++|+|++|||++++++|+|||++||.+| ||++++
T Consensus 95 vl~~~p~~pG~vi~~r~iGvl~MiDege~D~KIIaVp~~~~dp~~~~i~di~Dlp~~~l~~I~~fF~~YK~le~~K~v~v 174 (197)
T 3fq3_A 95 VCNTRPLIPGCVINVRPIGVLVMEDNSGKDEKIIAVPSPHLTRRYEKIHDYTDMPEITLKQIAHFFEHYKDLEPGKWVKI 174 (197)
T ss_dssp ECCSSCCCTTCEEEEEEEEEEEEEETTEEEEEEEEEECTTTCSTTTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEE
T ss_pred EEcCCCCCCceEEEEEEEEEEEEecCCCCccEEEEEECCCCCchhcccCchHHCCHHHHHHHHHHHHHhcCcCCCCeEEe
Confidence 999999999999999999999999999999999999999 89999999999999999999999999999999 899999
Q ss_pred CcccCHHHHHHHHHhhC
Q 029548 175 NDFLPASDAYNSVQQSM 191 (191)
Q Consensus 175 ~g~~~~~~A~~vI~~~~ 191 (191)
.+|.|+++|+++|++|+
T Consensus 175 ~~~~~~~~A~~~I~~~~ 191 (197)
T 3fq3_A 175 GDWGDEDYARKFIVEAI 191 (197)
T ss_dssp CCCBCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999999984
No 4
>2prd_A Pyrophosphate phosphohydrolase; 2.00A {Thermus thermophilus} SCOP: b.40.5.1
Probab=100.00 E-value=1.6e-64 Score=416.16 Aligned_cols=153 Identities=39% Similarity=0.669 Sum_probs=150.1
Q ss_pred CCCCCCCCCCCCCCeEEEEEEeCCCCC-------------CCcccccCCCCcccccccccccCCCCCccceEEecccccC
Q 029548 39 HPWHDLEIGPGAPKIFNCVIEIGKGSK-------------VDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVL 105 (191)
Q Consensus 39 spwhdip~~~~~p~~vn~vVEIPkgs~-------------~dR~~~~~~~yP~NYGfIP~T~~gDgDPLDvlvl~~~p~~ 105 (191)
|+||+||++++.|+.+|||||||+||+ +||++++++.||+|||||||||+|||||||||||++.|+.
T Consensus 1 ~~~h~ip~~~~~p~~~nvvIEIP~gs~~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl~~~p~~ 80 (174)
T 2prd_A 1 ANLKSLPVGDKAPEVVHMVIEVPRGSGNKYEYDPDLGAIKLDRVLPGAQFYPGDYGFIPSTLAEDGDPLDGLVLSTYPLL 80 (174)
T ss_dssp CCGGGSCCCTTTTTEEEEEEEECTTCCEEEEEETTTTEEEEEEECSSSCCCSSEEEECSSCCCTTSSCCEEEEECSSCCC
T ss_pred CCcccCCCCCCCCCEEEEEEEecCCCCeEEEEecCCCCEEEeeecCCCCcCCcccccccCcccCCCCceEEEEECCCCCC
Confidence 799999999999999999999999998 6999999999999999999999999999999999999999
Q ss_pred CeeEEEEEEeeeEeeEeCCCCceEEEEEecCCcCccCCCCCCCCChhHHHHHHHHHHHcccCC---CceeEeCcccCHHH
Q 029548 106 PGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDYKKNE---NKEVAVNDFLPASD 182 (191)
Q Consensus 106 pG~vv~vrviG~l~miD~ge~D~KiIaV~~~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~~e---gK~~~~~g~~~~~~ 182 (191)
||++++||+||+|+|+|+||.|||||||+++||+|++++|++||+++++++|+|||++||.+| ||+++++||.|+++
T Consensus 81 pG~vi~~r~iGvl~m~Dege~D~KiiaV~~~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le~k~gK~v~~~gw~~~~~ 160 (174)
T 2prd_A 81 PGVVVEVRVVGLLLMEDEKGGDAKVIGVVAEDQRLDHIQDIGDVPEGVKQEIQHFFETYKALEAKKGKWVKVTGWRDRKA 160 (174)
T ss_dssp TTCEEEEEEEEEEEEEESSCEEEEEEEEETTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTGGGGGGTCCEEEEEEECHHH
T ss_pred CceEEEEEEEEEEEEecCCCCccEEEEEECCCcchhhcCChHHCCHHHHHHHHHHHHHhcCccccCCCceEECcccCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhC
Q 029548 183 AYNSVQQSM 191 (191)
Q Consensus 183 A~~vI~~~~ 191 (191)
|+++|++|+
T Consensus 161 A~~~I~~~~ 169 (174)
T 2prd_A 161 ALEEVRACI 169 (174)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999984
No 5
>3ld3_A Inorganic pyrophosphatase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.75A {Anaplasma phagocytophilum} PDB: 3lo0_A
Probab=100.00 E-value=4.3e-64 Score=420.74 Aligned_cols=160 Identities=36% Similarity=0.609 Sum_probs=145.3
Q ss_pred ccCCcccCCCCCCCCCCCCCCeEEEEEEeCCCCC--------------CCcccccCCCCcccccccccccCCCCCccceE
Q 029548 32 SRRSVAAHPWHDLEIGPGAPKIFNCVIEIGKGSK--------------VDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVL 97 (191)
Q Consensus 32 ~~~~~~~spwhdip~~~~~p~~vn~vVEIPkgs~--------------~dR~~~~~~~yP~NYGfIP~T~~gDgDPLDvl 97 (191)
+..|.++|+||+||++.+.|+.|||||||||||+ +||++++++.||||||||||||+|||||||||
T Consensus 15 ~~~g~~~m~~~~i~~g~~~p~~vnvvIEIP~gs~~~KyE~dk~~G~l~~DR~l~~~~~YP~NYGfIP~Tl~~DGDPLDvl 94 (199)
T 3ld3_A 15 QTQGPGSMNLDDIGSGSNAPEEVNVVIEVSQDSHPVKYEFDEKNGALWVDRFLPTAMYYPCNYGFIPNTIAGDGDPVDVL 94 (199)
T ss_dssp -----------CCCSCTTTTTSEEEEEEECTTCCSEEEEECTTTCCEEEEEECSSSBCCSSEEEECTTCCCTTSSCCEEE
T ss_pred ccCCCccCChHHCCCCCCCCCEEEEEEEecCCCCCEEEEEecCCCCEEEEEEcCCCCcCCcccccccccccCCCCceEEE
Confidence 4588999999999999999999999999999983 68999999999999999999999999999999
Q ss_pred EecccccCCeeEEEEEEeeeEeeEeCCCCceEEEEEecC--CcCccCCCCCCCCChhHHHHHHHHHHHcccCC-CceeEe
Q 029548 98 IIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYRHYNDIKELPPHRLAEIRRFFEDYKKNE-NKEVAV 174 (191)
Q Consensus 98 vl~~~p~~pG~vv~vrviG~l~miD~ge~D~KiIaV~~~--dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~~e-gK~~~~ 174 (191)
||++.|+.||++++||+||+|+|+|+||.|||||||+++ ||+|++|+|++|||++++++|+|||++||.+| ||++++
T Consensus 95 vl~~~p~~pG~vi~vr~IGvl~MiDege~D~KIIaVp~~~~dp~~~~i~di~Dlp~~~l~~I~~fF~~YK~le~gK~v~v 174 (199)
T 3ld3_A 95 VLARFPVMPGAVICVRPVGVLMMNDEKGEDAKVLAVPATKVDQYYGNIVNYSDLPSSFLDSISHFFSFYKKLEKDKFVSV 174 (199)
T ss_dssp ECCSSCCCTTCEEEEEEEEEEEEEETTEECCEEEEEECTTTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEE
T ss_pred EecCCCCCCceEEEEEEEEEEEEecCCCCcceEEEEECCCCCccccccCchHHCCHHHHHHHHHHHHHhcCcCCCceEEe
Confidence 999999999999999999999999999999999999999 99999999999999999999999999999998 699999
Q ss_pred CcccCHHHHHHHHHhhC
Q 029548 175 NDFLPASDAYNSVQQSM 191 (191)
Q Consensus 175 ~g~~~~~~A~~vI~~~~ 191 (191)
.+|.|+++|+++|++|+
T Consensus 175 ~gw~~~~~A~~~I~~~~ 191 (199)
T 3ld3_A 175 GCWQDAASAKELIRSAI 191 (199)
T ss_dssp EEEEEHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 99999999999999984
No 6
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=100.00 E-value=2.1e-63 Score=409.12 Aligned_cols=152 Identities=35% Similarity=0.583 Sum_probs=148.2
Q ss_pred CCCCCCCCCCCCCCeEEEEEEeCCCCC--------------CCcccccCCCCcccccccccccCCCCCccceEEeccccc
Q 029548 39 HPWHDLEIGPGAPKIFNCVIEIGKGSK--------------VDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPV 104 (191)
Q Consensus 39 spwhdip~~~~~p~~vn~vVEIPkgs~--------------~dR~~~~~~~yP~NYGfIP~T~~gDgDPLDvlvl~~~p~ 104 (191)
++||+||++.+ |+.+|||||||+||+ +||++++++.||+|||||||||+|||||||||||++.|+
T Consensus 2 m~~~~ip~~~~-p~~~nvvIEIP~gs~p~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl~~~p~ 80 (173)
T 3d53_A 2 MFIKKIKAKAN-NNEINVIIEIPMNSGPIKYEFDKESGALFVDRFMQTTMSYPCNYGFIPDTLSNDGDPVDVLVVAHHPV 80 (173)
T ss_dssp -CGGGSCSCSS-TTCEEEEEEECTTCCSEEEEECTTTCCEEEEEECCSSCCCSSEEEECTTCCCTTSSCCEEEECCSSCC
T ss_pred CchhhCCCCCC-CCeEEEEEEeCCCCCceeEEEecCCCCEEEeeecCCCCcCCcccchhhCCccCCCCceEEEEECCCcc
Confidence 48999999999 999999999999999 689999999999999999999999999999999999999
Q ss_pred CCeeEEEEEEeeeEeeEeCCCCceEEEEEecC--CcCccCCCCCCCCChhHHHHHHHHHHHcccCC-CceeEeCcccCHH
Q 029548 105 LPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYRHYNDIKELPPHRLAEIRRFFEDYKKNE-NKEVAVNDFLPAS 181 (191)
Q Consensus 105 ~pG~vv~vrviG~l~miD~ge~D~KiIaV~~~--dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~~e-gK~~~~~g~~~~~ 181 (191)
.||++++||+||+|+|+|+||.|||||||+.+ ||+|++++|++||+++++++|+|||++||.+| ||++++.||.|++
T Consensus 81 ~~G~vi~~r~iGvl~m~Dege~D~KiiaV~~~k~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le~gK~v~v~gw~~~~ 160 (173)
T 3d53_A 81 VPGSVIKCRAIGVLMMEDESGLDEKIIAVPTSKLDITFDHIKELDDLCEMLKKRIVHFFEHYKDLEKGKWVKVTGWGDKV 160 (173)
T ss_dssp CTTCEEEEEEEEEEEEEETTEEEEEEEEEECTTTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEEECHH
T ss_pred CCceEEEEEEEEEEEEccCCCccceEEEEeCCCCCcchhhcCChhHCCHHHHHHHHHHHHHHcCccCCCcEEEccCcCHH
Confidence 99999999999999999999999999999999 99999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhC
Q 029548 182 DAYNSVQQSM 191 (191)
Q Consensus 182 ~A~~vI~~~~ 191 (191)
+|+++|++|+
T Consensus 161 ~A~~~I~~~~ 170 (173)
T 3d53_A 161 KAETLIKEGI 170 (173)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999984
No 7
>2au7_A Inorganic pyrophosphatase; hydrolase, mutant; 1.05A {Escherichia coli} PDB: 1i40_A 1i6t_A 1igp_A 1obw_A 2au6_A 2au8_A 2au9_A 2auu_A 1mjy_A 1faj_A 1ino_A 1ipw_A 1jfd_A 2eip_A 1mjz_A 1mjx_A 1mjw_A 3i4q_A*
Probab=100.00 E-value=4.6e-63 Score=407.76 Aligned_cols=152 Identities=35% Similarity=0.590 Sum_probs=149.0
Q ss_pred CCCCCCCCCCCCCeEEEEEEeCCCCC--------------CCcccccCCCCcccccccccccCCCCCccceEEecccccC
Q 029548 40 PWHDLEIGPGAPKIFNCVIEIGKGSK--------------VDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVL 105 (191)
Q Consensus 40 pwhdip~~~~~p~~vn~vVEIPkgs~--------------~dR~~~~~~~yP~NYGfIP~T~~gDgDPLDvlvl~~~p~~ 105 (191)
+||+||++++.|+.+|||||||+||+ +||++++++.||+|||||||||+|||||||||||++.|+.
T Consensus 1 ~~~~ip~~~~~p~~~nvvIEIP~gs~p~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl~~~p~~ 80 (175)
T 2au7_A 1 SLLNVPAGKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDQFMSTAMFYPCNYGYINHTLSLDGDPVDVLVPTPYPLQ 80 (175)
T ss_dssp CGGGCCSCSBTTTBEEEEEEECTTCCSEEEEECTTTCCEEEEEECSSSCCCSSEEEECTTCCCTTSSCCEEEECCSSCCC
T ss_pred CcccCCCCCCCCCEEEEEEEecCCCCceeEEEecCCCCEEEeeecCCCCcCCcCcCccCCccCCCCCceEEEEECCCCCC
Confidence 59999999999999999999999999 6899999999999999999999999999999999999999
Q ss_pred CeeEEEEEEeeeEeeEeCCCCceEEEEEecC--CcCccCCCCCCCCChhHHHHHHHHHHHcccCC-CceeEeCcccCHHH
Q 029548 106 PGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYRHYNDIKELPPHRLAEIRRFFEDYKKNE-NKEVAVNDFLPASD 182 (191)
Q Consensus 106 pG~vv~vrviG~l~miD~ge~D~KiIaV~~~--dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~~e-gK~~~~~g~~~~~~ 182 (191)
||++++||+||+|+|+|+||.|||||||+.+ ||+|++++|++||+++++++|+|||++||.+| ||++++.||.|+++
T Consensus 81 pG~vi~~r~iGvl~m~Deg~~D~KiiaV~~~k~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le~gK~v~v~gw~~~~~ 160 (175)
T 2au7_A 81 PGSVTRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEGWENAEA 160 (175)
T ss_dssp TTCEEEEEEEEEEEEEETTEECCEEEEEECTTTCSTTTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEEECHHH
T ss_pred CceEEEEEEEEEEEeecCCCCccEEEEEeCCCCCcchhhCCChHHCCHHHHHHHHHHHHHhhCccCCCCeEEccccCHHH
Confidence 9999999999999999999999999999999 99999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhC
Q 029548 183 AYNSVQQSM 191 (191)
Q Consensus 183 A~~vI~~~~ 191 (191)
|+++|++|+
T Consensus 161 A~~~I~~~~ 169 (175)
T 2au7_A 161 AKAEIVASF 169 (175)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999984
No 8
>2bqx_A Inorganic pyrophosphatase; hydrolase; 1.90A {Helicobacter pylori} PDB: 1ygz_A 2bqy_A
Probab=100.00 E-value=1.1e-62 Score=404.92 Aligned_cols=152 Identities=38% Similarity=0.639 Sum_probs=143.4
Q ss_pred CCCCCCCCCCCCCCeEEEEEEeCCCCC-------------CCcccccCCCCcccccccccccCCCCCccceEEecccccC
Q 029548 39 HPWHDLEIGPGAPKIFNCVIEIGKGSK-------------VDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVL 105 (191)
Q Consensus 39 spwhdip~~~~~p~~vn~vVEIPkgs~-------------~dR~~~~~~~yP~NYGfIP~T~~gDgDPLDvlvl~~~p~~ 105 (191)
++||+||++++ |+.+|||||||+||+ +||++++++.||+|||||||||+|||||||||||++.|+.
T Consensus 1 m~~~~ip~~~~-p~~~nvvIEIP~gs~~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl~~~p~~ 79 (173)
T 2bqx_A 1 MNLEKLEVSHD-ADSLCVVIEISKHSNIKYELDKESGALMVDRVLYGAQNYPANYGFVPNTLGSDGDPVDALVLSDVAFQ 79 (173)
T ss_dssp ------CCCEE-TTEEEEEEEECTTCSEEEEECTTTCCEEEEEECSSSCCCSSEEEECSSCCCTTSSCCEEEECCSSCCC
T ss_pred CCcccCCCCCC-CCeEEEEEEECCCCCeEEEEecCCCCEEEeeecCCCCcCcccccccccccCCCCCceEEEEECCCCCC
Confidence 37999999998 999999999999998 6899999999999999999999999999999999999999
Q ss_pred CeeEEEEEEeeeEeeEeCCCCceEEEEEecC--CcCccCCCCCCCCChhHHHHHHHHHHHcccCC-CceeEeCcccCHHH
Q 029548 106 PGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYRHYNDIKELPPHRLAEIRRFFEDYKKNE-NKEVAVNDFLPASD 182 (191)
Q Consensus 106 pG~vv~vrviG~l~miD~ge~D~KiIaV~~~--dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~~e-gK~~~~~g~~~~~~ 182 (191)
||++++||+||+|+|+|+||.|||||||+.+ ||+|+++++++||+++++++|+|||++||.+| ||++++.||.|+++
T Consensus 80 ~G~vi~~r~iGvl~m~D~g~~D~KiiaV~~~k~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le~gK~v~~~g~~~~~~ 159 (173)
T 2bqx_A 80 AGSVVKARLVGVLNMEDESGMDEKLIALPIDKIDPTHSYVKDIDDLSKHTLDKIKHFFETYKDLEPNKWVKVKGFENKES 159 (173)
T ss_dssp TTCEEEEEEEEEEEEEETTEEEEEEEEEECTTTCCTTTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEEEEHHH
T ss_pred CceEEEEEEEEEEEeccCCCCccEEEEEeCCCCCcchhhcCChhHCCHHHHHHHHHHHHHhccccCCCceeeCcCcCHHH
Confidence 9999999999999999999999999999999 99999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhC
Q 029548 183 AYNSVQQSM 191 (191)
Q Consensus 183 A~~vI~~~~ 191 (191)
|+++|++|+
T Consensus 160 A~~~I~~~~ 168 (173)
T 2bqx_A 160 AIKVLEKAI 168 (173)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999984
No 9
>1e9g_A Ppase, inorganic pyrophosphatase; pyrophosphate phosphohydrolase, hydrolase, manganese; HET: PO4; 1.15A {Saccharomyces cerevisiae} SCOP: b.40.5.1 PDB: 1e6a_A* 1wgi_A 1wgj_A 2ihp_A* 8prk_A 2ik6_A 2ik2_A 2ik4_A 117e_A 2ik1_A* 2ik9_A 2ik0_A 2ik7_A 1m38_A 1ypp_A 1huk_A 1huj_A 1pyp_A
Probab=100.00 E-value=3.1e-63 Score=434.55 Aligned_cols=175 Identities=29% Similarity=0.443 Sum_probs=163.3
Q ss_pred CCCCCCCCCceeeeeccccCCcccCCCCCCCCCCCCC-CeEEEEEEeCCCCC------------------------CCcc
Q 029548 15 SQPPAHPPLNERILSSMSRRSVAAHPWHDLEIGPGAP-KIFNCVIEIGKGSK------------------------VDRV 69 (191)
Q Consensus 15 ~~~~~~~~~~~r~~~~~~~~~~~~spwhdip~~~~~p-~~vn~vVEIPkgs~------------------------~dR~ 69 (191)
.+.|+.+|.+||+|+ .+.+..+||||+||++.+.+ ..|||||||||||+ ++|+
T Consensus 5 ~~~G~~~t~~~r~~~--~~~g~~~sp~hdIp~~~~~~~~~~nvVIEIP~gs~~KyEidk~~~~nPIkqd~k~G~lr~dr~ 82 (286)
T 1e9g_A 5 RQIGAKNTLEYKVYI--EKDGKPVSAFHDIPLYADKENNIFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRN 82 (286)
T ss_dssp EEEEETTSTTCEEEE--EETTEEECTTTTSCSEEETTTTEEEEEEEECTTCCBCEEECTTSTTCCEEECEETTEECBCCE
T ss_pred eeecCCCCcceEEEE--EeCCeecCchhhCCCCCCCCCCEEEEEEEECCCCCeEEEEccCCCCCcchhhhcCCcEEEEec
Confidence 467899999999994 66799999999999998764 89999999999998 3566
Q ss_pred cccCCCCccccccccccc------------CCCCCccceEEecccccCCeeEEEEEEeeeEeeEeCCCCceEEEEEecCC
Q 029548 70 LYSSVVYPHNYGFIPRTL------------CEDNDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADD 137 (191)
Q Consensus 70 ~~~~~~yP~NYGfIP~T~------------~gDgDPLDvlvl~~~p~~pG~vv~vrviG~l~miD~ge~D~KiIaV~~~d 137 (191)
+|+++.|||||||||||| +|||||||||||++.|+.||++++||+||+|+|+|+||.|||||||+++|
T Consensus 83 l~~~~~YP~NYGfIPqTledp~~~~~~t~~~gDgDPLDVlvi~~~p~~pG~vi~vr~IGvl~MiDege~D~KIIaV~~~D 162 (286)
T 1e9g_A 83 CFPHHGYIHNYGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDIND 162 (286)
T ss_dssp ETTCCSCSSEEEECSSCCCCTTSEETTTTEEBCSSCCEEEECCSSCCCTTCEEEEEEEEEECEEETTEECCEEEEEETTS
T ss_pred cCCCCCCccCcccCcccccCcccccccCCCCCCCCceEEEEecCccCCCccEEEEEEeEEEEeccCCCCCceEEEEeCCC
Confidence 788999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred cCccCCCCCCCCCh---hHHHHHHHHHHHcccCCCcee---Ee-CcccCHHHHHHHHHhhC
Q 029548 138 PEYRHYNDIKELPP---HRLAEIRRFFEDYKKNENKEV---AV-NDFLPASDAYNSVQQSM 191 (191)
Q Consensus 138 p~~~~i~di~Dl~~---~~l~~i~~fF~~YK~~egK~~---~~-~g~~~~~~A~~vI~~~~ 191 (191)
|+|++|+|++||++ +++++|+|||++||.+|||+. .+ .+|.|+++|+++|++|+
T Consensus 163 p~~~~i~di~Dl~~~~p~~l~~i~~fF~~YK~leGK~~n~~~~~~~~~~~~~A~~vI~~~~ 223 (286)
T 1e9g_A 163 PLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGEAKNKKYALDIIKETH 223 (286)
T ss_dssp TTGGGCCSHHHHHHHSTTHHHHHHHHHHHTTGGGTCCCCEEGGGGCCBCHHHHHHHHHHHH
T ss_pred cccccCCCHHHhchhhHHHHHHHHHHHHHhcCcCCCCcceeEecCcCCCHHHHHHHHHHHH
Confidence 99999999999987 899999999999999999983 34 79999999999999984
No 10
>3tr4_A Inorganic pyrophosphatase; central intermediary metabolism, hydrolase; HET: MSE; 2.00A {Coxiella burnetii} SCOP: b.40.5.0
Probab=100.00 E-value=6.5e-62 Score=401.84 Aligned_cols=149 Identities=38% Similarity=0.628 Sum_probs=143.1
Q ss_pred CCCCCCCCCCCeEEEEEEeCCCCC--------------CCcccccCCCCcccccccccccCCCCCccceEEecccccCCe
Q 029548 42 HDLEIGPGAPKIFNCVIEIGKGSK--------------VDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPG 107 (191)
Q Consensus 42 hdip~~~~~p~~vn~vVEIPkgs~--------------~dR~~~~~~~yP~NYGfIP~T~~gDgDPLDvlvl~~~p~~pG 107 (191)
|+||++.+. +.+|||||||+||+ +||++++++.||||||||||||+|||||||||||++.|+.||
T Consensus 6 h~ip~g~~~-~~vnvvIEIP~gs~~~KyE~dk~~g~i~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl~~~p~~pG 84 (178)
T 3tr4_A 6 FLVSAGKGI-DDFNVIIEIPANGGEVKYEYDKELGFLTVDRFMPTSMRYPCNYGFVPSTLAQDGDPLDVLVLTPVPVQPG 84 (178)
T ss_dssp --CCCEEET-TEEEEEEEECTTCCSEEEEEETTTTEEEEEEECCSSBCCSSEEEECTTCCCTTSSCCEEEECCSSCCCTT
T ss_pred ccCCCCCCC-CEEEEEEEecCCCCcEEEEEecCCCcEEEEEecCcCccCCccccccCCcccCCCCceEEEEECCCCCCCe
Confidence 999999887 99999999999987 689999999999999999999999999999999999999999
Q ss_pred eEEEEEEeeeEeeEeCCCCceEEEEEecC--CcCccCCCCCCCCChhHHHHHHHHHHHcccCC-CceeEeCcccCHHHHH
Q 029548 108 CFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYRHYNDIKELPPHRLAEIRRFFEDYKKNE-NKEVAVNDFLPASDAY 184 (191)
Q Consensus 108 ~vv~vrviG~l~miD~ge~D~KiIaV~~~--dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~~e-gK~~~~~g~~~~~~A~ 184 (191)
++++||+||+|+|+|+||.|||||||+++ ||+|++|+|++|||++++++|+|||++||.+| ||++++.||.|+++|+
T Consensus 85 ~vi~~r~iGvl~m~Dege~D~KiIaVp~~~~dp~~~~i~di~dl~~~~l~~i~~fF~~YK~le~gK~v~~~g~~~~~~A~ 164 (178)
T 3tr4_A 85 VLMRVRALGIMKMEDEAGEDSKVLAVPVVKACRAYEAIQSLKDISSLLLDAISHFFERYKDLEPNKWAKVKGWEDKEAAK 164 (178)
T ss_dssp CEEEEEEEEEEEEEETTEECCEEEEEECTTTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEEECHHHHH
T ss_pred eEEEEEEEEEEEeccCCCCcceEEEEEcCCCCchhhhcCchhhCCHHHHHHHHHHHHHHcCcCCCceeEeccCcCHHHHH
Confidence 99999999999999999999999999999 89999999999999999999999999999999 6999999999999999
Q ss_pred HHHHhhC
Q 029548 185 NSVQQSM 191 (191)
Q Consensus 185 ~vI~~~~ 191 (191)
++|++|+
T Consensus 165 ~~I~~~~ 171 (178)
T 3tr4_A 165 KEFEASI 171 (178)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999984
No 11
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase); thermostability, magnesium, hydrolase; 2.70A {Sulfolobus acidocaldarius} SCOP: b.40.5.1
Probab=100.00 E-value=5e-61 Score=394.99 Aligned_cols=149 Identities=44% Similarity=0.761 Sum_probs=144.1
Q ss_pred CCCCCCCCCCeEEEEEEeCCCCC-------------CCcccccCCCCcccccccccccCCCCCccceEEecccccCCeeE
Q 029548 43 DLEIGPGAPKIFNCVIEIGKGSK-------------VDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCF 109 (191)
Q Consensus 43 dip~~~~~p~~vn~vVEIPkgs~-------------~dR~~~~~~~yP~NYGfIP~T~~gDgDPLDvlvl~~~p~~pG~v 109 (191)
+||.+.+.|+.+|||||||+||+ +||++++++.||+|||||||||+|||||||||||++.|+.||++
T Consensus 2 ~i~~g~~~p~~~nvvIEIP~gs~~KyE~dk~~g~l~~DR~l~~~~~YP~NYGfIP~Tl~~DgDPlDvlvl~~~p~~~G~v 81 (173)
T 1qez_A 2 KLSPGKNAPDVVNVLVEIPQGSNIKYEYDDEEGVIKVDRVLYTSMNYPFNYGFIPGTLEEDGDPLDVLVITNYQLYPGSV 81 (173)
T ss_dssp CCCSCTTTTTSEEEEEEECTTCCEEEEEETTTTEEEEEEECSSSBCCSSEEEECTTCCCTTSSCCEEEECCSSCCCTTCE
T ss_pred CcCCCCCCCCeEEEEEEECCCCCeEEEEecCCCCEEEEeecCCCCcCCccccccccccCCCCCceEEEEECCCCCCCccE
Confidence 46777777889999999999998 78999999999999999999999999999999999999999999
Q ss_pred EEEEEeeeEeeEeCCCCceEEEEEecC--CcCccCCCCCCCCChhHHHHHHHHHHHcccCC-CceeEeCcccCHHHHHHH
Q 029548 110 LRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYRHYNDIKELPPHRLAEIRRFFEDYKKNE-NKEVAVNDFLPASDAYNS 186 (191)
Q Consensus 110 v~vrviG~l~miD~ge~D~KiIaV~~~--dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~~e-gK~~~~~g~~~~~~A~~v 186 (191)
++||+||+|+|+|+||.|||||||+++ ||+|++++|++||+++++++|+|||++||.+| ||++++.||.|+++|+++
T Consensus 82 i~~r~iGvl~m~Dege~D~KiiaV~~~k~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~le~gK~v~~~gw~~~~~A~~~ 161 (173)
T 1qez_A 82 IEVRPIGILYMKDEEGEDAKIVAVPKDKTDPSFSNIKDINDLPQATKNKIVHFFEHYKELEPGKYVKISGWGSATEAKNR 161 (173)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEECTTTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEEECHHHHHHH
T ss_pred EEEEEEEEEEeecCCCcccEEEEEeCCCCCcchhhcCChHHCCHHHHHHHHHHHHHhccccCCCceEEccccCHHHHHHH
Confidence 999999999999999999999999999 99999999999999999999999999999999 999999999999999999
Q ss_pred HHhhC
Q 029548 187 VQQSM 191 (191)
Q Consensus 187 I~~~~ 191 (191)
|++|+
T Consensus 162 I~~~~ 166 (173)
T 1qez_A 162 IQLAI 166 (173)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99984
No 12
>1sxv_A Inorganic pyrophosphatase; structural genomics, ppase,, hydrolase; 1.30A {Mycobacterium tuberculosis} PDB: 1wcf_A 2uxs_A 4ecp_A
Probab=100.00 E-value=1.8e-59 Score=385.34 Aligned_cols=140 Identities=41% Similarity=0.783 Sum_probs=136.9
Q ss_pred CeEEEEEEeCCCCC-------------CCcccccCCCCcccccccccccCCCCCccceEEecccccCCeeEEEEEEeeeE
Q 029548 52 KIFNCVIEIGKGSK-------------VDRVLYSSVVYPHNYGFIPRTLCEDNDPLDVLIIMQEPVLPGCFLRAKAIGLM 118 (191)
Q Consensus 52 ~~vn~vVEIPkgs~-------------~dR~~~~~~~yP~NYGfIP~T~~gDgDPLDvlvl~~~p~~pG~vv~vrviG~l 118 (191)
-.+||||||||||+ +||++++++.||+|||||||||++||||||||||++.|+.||++++||+||+|
T Consensus 11 ~~~nvvIEIP~gs~~KyE~Dk~~G~l~~DR~l~~~~~YP~NYGfIP~Tl~~DGDPlDvlvl~~~p~~pG~vi~~r~iGvl 90 (172)
T 1sxv_A 11 MQFDVTIEIPKGQRNKYEVDHETGRVRLDRYLYTPMAYPTDYGFIEDTLGDDGDPLDALVLLPQPVFPGVLVAARPVGMF 90 (172)
T ss_dssp CCEEEEEEECTTCCEEC-CCTTTCCCCCCEECSSSCCCSSEEEEETTCCCTTSSCCEEEECCSSCCCTTCEEEEEEEEEE
T ss_pred eEEEEEEEECCCCCeEEEEEcCCCCEEEEeecCCCCCCCcCcCccCCccCCCCCCeEEEEEcCCCcCCceEEEEEEEEEE
Confidence 46999999999998 78999999999999999999999999999999999999999999999999999
Q ss_pred eeEeCCCCceEEEEEecCCcCccCCCCCCCCChhHHHHHHHHHHHcccCC-CceeEeCcccCHHHHHHHHHhhC
Q 029548 119 PMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDYKKNE-NKEVAVNDFLPASDAYNSVQQSM 191 (191)
Q Consensus 119 ~miD~ge~D~KiIaV~~~dp~~~~i~di~Dl~~~~l~~i~~fF~~YK~~e-gK~~~~~g~~~~~~A~~vI~~~~ 191 (191)
+|+|+||.|||||||+.+||+|++++|++|||++++++|+|||++||.+| ||++++.+|.|+++|+++|++|+
T Consensus 91 ~m~Dege~D~KIIaVp~~Dp~~~~i~di~Dlp~~~l~~I~~fF~~YK~le~gK~v~v~gw~~~~~A~~~I~~~~ 164 (172)
T 1sxv_A 91 RMVDEHGGDDKVLCVPAGDPRWDHVQDIGDVPAFELDAIKHFFVHYKDLEPGKFVKAADWVDRAEAEAEVQRSV 164 (172)
T ss_dssp EEEETTEECCEEEEEETTCGGGTTCCSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEEECHHHHHHHHHHHH
T ss_pred EecCCCCCCCEEEEEeCCCCCccccCChHHCCHHHHHHHHHHHHHhcCcCCCCeEEeCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 99999999999999999999984
No 13
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.46 E-value=26 Score=25.74 Aligned_cols=38 Identities=18% Similarity=0.147 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHcccC-------------CCc--eeEeCcccCHHHHHHHHHh
Q 029548 152 HRLAEIRRFFEDYKKN-------------ENK--EVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 152 ~~l~~i~~fF~~YK~~-------------egK--~~~~~g~~~~~~A~~vI~~ 189 (191)
..-++|++||..|... .|+ -+.+..|.+.++|.+.|+.
T Consensus 35 ~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~ 87 (123)
T 2dha_A 35 ATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 87 (123)
T ss_dssp CCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT
T ss_pred CCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh
Confidence 4678899999999531 243 3667789999999998864
No 14
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.87 E-value=31 Score=22.90 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHccc-CCC-----ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKK-NEN-----KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~-~eg-----K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-. .+. +.+.+..|.+.+.|.+.|++
T Consensus 21 t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~ 63 (93)
T 2cqh_A 21 TADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIET 63 (93)
T ss_dssp CHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHH
Confidence 55778999999987 443 33566678999999988874
No 15
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.56 E-value=28 Score=23.49 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHcccCC------------CceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE------------NKEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e------------gK~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-... .+.+.+..|.+.+.|.+.|++
T Consensus 25 t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 2cqb_A 25 DDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 73 (102)
T ss_dssp CHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHH
T ss_pred CHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 4578899999984332 133677789999999998864
No 16
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=38.77 E-value=21 Score=24.08 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHcccC------CCceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKN------ENKEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~------egK~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-.. .+|.+.+..|.+.++|.+.|++
T Consensus 30 t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~ 72 (97)
T 1why_A 30 SLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAK 72 (97)
T ss_dssp CHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 457789999999643 2455677788999999888874
No 17
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=37.93 E-value=28 Score=22.63 Aligned_cols=37 Identities=27% Similarity=0.310 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHcccC----------CC--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKN----------EN--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~----------eg--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-.. .| +.+.+..|.+.++|.+.+++
T Consensus 19 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 67 (87)
T 3bs9_A 19 TTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 67 (87)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 457789999988432 12 23566788999999988874
No 18
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=37.76 E-value=33 Score=24.36 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHcccC------------CCceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKN------------ENKEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~------------egK~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-.. ..|.+.+..|.+.+.|.+.|++
T Consensus 76 ~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 124 (140)
T 2ku7_A 76 DDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 124 (140)
T ss_dssp CHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 457889999998432 1244677789999999998864
No 19
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.69 E-value=38 Score=22.43 Aligned_cols=37 Identities=27% Similarity=0.305 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHcccCC----CceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE----NKEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e----gK~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+.+|..|-... -+.+.+..|.+.++|.+.|++
T Consensus 23 t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~ 63 (92)
T 2dgt_A 23 TNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRG 63 (92)
T ss_dssp CHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHH
Confidence 5577899999996554 233566788999999988864
No 20
>1jo6_A KCNMB2, potassium large conductance calcium-activated channel, subfamily M, beta member 2..., large; helix, ION channel, cytoplasmic PART of; NMR {Synthetic} SCOP: j.89.1.1
Probab=37.64 E-value=6.1 Score=25.42 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=15.5
Q ss_pred CcccccccccccC-----------CCCCccce
Q 029548 76 YPHNYGFIPRTLC-----------EDNDPLDV 96 (191)
Q Consensus 76 yP~NYGfIP~T~~-----------gDgDPLDv 96 (191)
++|+++=+++|+. +||||+|+
T Consensus 2 ~~~~~~k~~~~~~~~~~R~iy~~~~dgd~~dk 33 (45)
T 1jo6_A 2 FIWTSGRTSSSYRHDEKRNIYQKIRDHDLLDK 33 (45)
T ss_dssp CCSSCCCCCCSSSSCSTTSSHHHHHHHHTTTS
T ss_pred cccccccceeeeccccccccccccccCCcccc
Confidence 4677777777763 48999997
No 21
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=37.40 E-value=36 Score=22.04 Aligned_cols=35 Identities=17% Similarity=0.309 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHc----c--------c-----CCCceeEeCcccCHHHHHHHH
Q 029548 153 RLAEIRRFFEDY----K--------K-----NENKEVAVNDFLPASDAYNSV 187 (191)
Q Consensus 153 ~l~~i~~fF~~Y----K--------~-----~egK~~~~~g~~~~~~A~~vI 187 (191)
.-++|+++|..| - . ...|.+.+..|.+.+.|.+.+
T Consensus 19 t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~ 70 (87)
T 2hzc_A 19 TEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM 70 (87)
T ss_dssp CHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG
T ss_pred CHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH
Confidence 457889999999 3 1 112446667889999999887
No 22
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.83 E-value=43 Score=22.50 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHcccCC----------C--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE----------N--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e----------g--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-... | +.+.+..|.+.++|.+.|++
T Consensus 25 t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 1x5s_A 25 NEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 73 (102)
T ss_dssp CHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 4577899999984321 1 23667789999999998864
No 23
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.43 E-value=45 Score=22.39 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHcccCC-------CceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE-------NKEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e-------gK~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-..+ .|.+.+..|.+.+.|.+.|++
T Consensus 32 t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 75 (97)
T 2e5j_A 32 RVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSC 75 (97)
T ss_dssp CHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHH
T ss_pred cHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHH
Confidence 5678899999996553 234666778999999988864
No 24
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.82 E-value=23 Score=24.82 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHcccCC----------C--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE----------N--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e----------g--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|++||..|-..+ | |-+.+..|.+.++|.+.|+.
T Consensus 28 t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~ 76 (114)
T 2cpy_A 28 TKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 76 (114)
T ss_dssp CHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG
T ss_pred CHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh
Confidence 5677999999986552 2 33566788999999998864
No 25
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=35.11 E-value=34 Score=21.55 Aligned_cols=37 Identities=16% Similarity=0.307 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHcccCC----------C--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE----------N--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e----------g--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+.+|..|-... | +...+..|.+.+.|.+.|+.
T Consensus 12 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~ 60 (75)
T 1iqt_A 12 PEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60 (75)
T ss_dssp CHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT
T ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh
Confidence 4577899999984321 1 33566778899999888864
No 26
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.04 E-value=36 Score=22.45 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHcccCC----------C--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE----------N--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e----------g--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-... | +.+.+..|.+.++|.+.|++
T Consensus 28 t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 76 (95)
T 2cqc_A 28 TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 76 (95)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 5678999999984321 2 23566788999999988874
No 27
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=33.52 E-value=24 Score=24.39 Aligned_cols=37 Identities=16% Similarity=0.288 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHcccCC----CceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE----NKEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e----gK~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-... .|.+.+..|.+.+.|.+.|++
T Consensus 41 t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~ 81 (110)
T 1wf1_A 41 KKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLG 81 (110)
T ss_dssp CHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHH
Confidence 5788999999996654 244566778888888888764
No 28
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=33.30 E-value=30 Score=22.37 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHcccCC----------C--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE----------N--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e----------g--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-... | +...+..|.+.+.|.+.+++
T Consensus 20 ~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 68 (85)
T 3mdf_A 20 DDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 68 (85)
T ss_dssp CHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHH
Confidence 4578899999984321 2 23566678999999988864
No 29
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=33.04 E-value=44 Score=22.32 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcccC---------C-C--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKN---------E-N--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~---------e-g--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-.. + | +.+.+..|.+.+.|.+.|++
T Consensus 15 t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 63 (96)
T 2x1f_A 15 TEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRN 63 (96)
T ss_dssp CHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH
Confidence 457789999998421 1 2 34667788999999988864
No 30
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.71 E-value=51 Score=21.77 Aligned_cols=37 Identities=11% Similarity=0.096 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHcccC-------C----C--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKN-------E----N--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~-------e----g--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-.. . | +.+.+..|.+.+.|.+.|+.
T Consensus 18 t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 67 (96)
T 1x5t_A 18 DEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 67 (96)
T ss_dssp CHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHH
Confidence 457789999988432 1 1 33667789999999998874
No 31
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=32.32 E-value=33 Score=22.70 Aligned_cols=37 Identities=14% Similarity=0.070 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHcccC---------CC--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKN---------EN--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~---------eg--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-.. .| |.+.+..|.+.+.|.+.|++
T Consensus 29 ~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (95)
T 2ywk_A 29 REEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIAL 76 (95)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHH
Confidence 457799999998322 12 23566778899999888874
No 32
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=32.26 E-value=56 Score=21.93 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHcccCC-------CceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE-------NKEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e-------gK~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-... .+.+.+..|.+.+.|.+.|++
T Consensus 13 t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~ 56 (101)
T 2hvz_A 13 GKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRG 56 (101)
T ss_dssp SHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHH
Confidence 4577899999995443 244666788999999888874
No 33
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.15 E-value=34 Score=22.97 Aligned_cols=36 Identities=14% Similarity=0.265 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHcccCC------------CceeEeCcccCHHHHHHHHH
Q 029548 153 RLAEIRRFFEDYKKNE------------NKEVAVNDFLPASDAYNSVQ 188 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e------------gK~~~~~g~~~~~~A~~vI~ 188 (191)
.-++|+++|..|-... .|.+.+..|.+.+.|.+.|+
T Consensus 23 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 70 (99)
T 2dgs_A 23 GETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 70 (99)
T ss_dssp CHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH
Confidence 4567899999984221 23467778899999988885
No 34
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=32.00 E-value=36 Score=21.48 Aligned_cols=37 Identities=11% Similarity=0.311 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHcccCC----------C--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE----------N--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e----------g--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-... | +...+..|.+.+.|.+.++.
T Consensus 13 t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 61 (77)
T 1uaw_A 13 TQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 61 (77)
T ss_dssp CSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHT
T ss_pred CHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHh
Confidence 3456889999884322 1 33666788899999988874
No 35
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.93 E-value=31 Score=23.50 Aligned_cols=38 Identities=13% Similarity=0.233 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHcccCC----------C--ceeEeCcccCHHHHHHHHHh
Q 029548 152 HRLAEIRRFFEDYKKNE----------N--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 152 ~~l~~i~~fF~~YK~~e----------g--K~~~~~g~~~~~~A~~vI~~ 189 (191)
..-++|+++|..|-... | |.+.+..|.+.+.|.++|+.
T Consensus 28 ~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 77 (105)
T 2dh8_A 28 TTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 77 (105)
T ss_dssp CCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh
Confidence 35677899999994221 2 23566778888888888763
No 36
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.89 E-value=44 Score=23.16 Aligned_cols=37 Identities=14% Similarity=0.263 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHcccC------C----C--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKN------E----N--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~------e----g--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-.. . | |-+.+..|.+.+.|.+.|+.
T Consensus 30 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~ 78 (116)
T 2cqd_A 30 TDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 78 (116)
T ss_dssp CHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTC
T ss_pred CHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHh
Confidence 457789999998321 1 1 23677789999999998875
No 37
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=31.75 E-value=56 Score=22.08 Aligned_cols=37 Identities=16% Similarity=0.271 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcccCC------------CceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE------------NKEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e------------gK~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-... .|.+.+..|.+.+.|.+.|++
T Consensus 26 t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 74 (106)
T 2dgp_A 26 DEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 74 (106)
T ss_dssp CHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 4567899999984321 234677788899999888864
No 38
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=31.47 E-value=52 Score=20.69 Aligned_cols=36 Identities=14% Similarity=0.366 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHcccCC----------C--ceeEeCcccCHHHHHHHHH
Q 029548 153 RLAEIRRFFEDYKKNE----------N--KEVAVNDFLPASDAYNSVQ 188 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e----------g--K~~~~~g~~~~~~A~~vI~ 188 (191)
.-++|+.+|..|-... | +...+..|.+.+.|.++++
T Consensus 12 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 59 (75)
T 2mss_A 12 TVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 59 (75)
T ss_dssp CHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS
T ss_pred CHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 4567899999984321 2 3366778899999988774
No 39
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=31.42 E-value=45 Score=22.09 Aligned_cols=37 Identities=3% Similarity=-0.055 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHcc--cCC----------Cc--eeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYK--KNE----------NK--EVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK--~~e----------gK--~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|- ... |+ .+.+..|.+.+.|.+.|++
T Consensus 14 t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~ 64 (90)
T 3p5t_L 14 TDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDL 64 (90)
T ss_dssp CHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHH
Confidence 4567889999997 321 22 2566678999999988864
No 40
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=30.91 E-value=37 Score=21.79 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHcccCC----------C--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE----------N--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e----------g--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-... | +...+..|.+.+.|.+.+++
T Consensus 14 t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 62 (83)
T 3md1_A 14 DDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDS 62 (83)
T ss_dssp CHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHH
Confidence 4577899999884321 2 23566678999999888874
No 41
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.91 E-value=36 Score=22.44 Aligned_cols=36 Identities=11% Similarity=0.176 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHcccC--------CC--ceeEeCcccCHHHHHHHHH
Q 029548 153 RLAEIRRFFEDYKKN--------EN--KEVAVNDFLPASDAYNSVQ 188 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~--------eg--K~~~~~g~~~~~~A~~vI~ 188 (191)
.-++|+++|..|+.. .| +.+.+..|.+.++|.+.|+
T Consensus 23 t~~~l~~~F~~~~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~ 68 (91)
T 2dgw_A 23 TEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK 68 (91)
T ss_dssp CHHHHHHHHTTSCCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH
T ss_pred CHHHHHHHHhhCCceEEEEEECCCCCCceEEEEEECCHHHHHHHHH
Confidence 457789999998321 12 2256678899999998876
No 42
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=30.84 E-value=56 Score=21.76 Aligned_cols=37 Identities=16% Similarity=0.286 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHcccC----------CC--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKN----------EN--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~----------eg--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-.. .| +.+.+..|.+.+.|.+.|++
T Consensus 21 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 69 (99)
T 1whw_A 21 SEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 69 (99)
T ss_dssp CHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHH
Confidence 456789999998432 12 23667788999999998864
No 43
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.75 E-value=39 Score=22.86 Aligned_cols=37 Identities=11% Similarity=0.264 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHcccC---------C-C--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKN---------E-N--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~---------e-g--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+.+|..|-.. + | |.+.+..|.+.+.|.+.|++
T Consensus 28 t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 28 TEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc
Confidence 567799999998432 1 2 23667789999999998874
No 44
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=30.62 E-value=37 Score=23.11 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHcccCC----CceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE----NKEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e----gK~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-... -+.+.+..|.+.+.|.+.|++
T Consensus 24 t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~ 64 (103)
T 2dgu_A 24 TEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEE 64 (103)
T ss_dssp CHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHH
Confidence 4577899999995433 133566778899999988874
No 45
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=30.49 E-value=36 Score=23.21 Aligned_cols=37 Identities=11% Similarity=0.223 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHcccCC----CceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE----NKEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e----gK~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+.+|..|-... .|.+.+..|.+.+.|.+.|++
T Consensus 36 t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~ 76 (97)
T 2xnq_A 36 SKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEX 76 (97)
T ss_dssp CHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHH
Confidence 5577899999995443 244666778899999888874
No 46
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=30.41 E-value=37 Score=22.88 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcccCCC--------------------ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNEN--------------------KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~eg--------------------K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-.... |.+.+..|.+.+.|.+.|+.
T Consensus 26 t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~ 82 (99)
T 2la6_A 26 TIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDW 82 (99)
T ss_dssp CHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 56788999998854332 22555678899999988864
No 47
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.40 E-value=29 Score=23.41 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHcccC------CC--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKN------EN--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~------eg--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-.. .| |.+.+..|.+.+.|.+.|++
T Consensus 28 t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 72 (101)
T 2fc9_A 28 TEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNS 72 (101)
T ss_dssp CHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHH
Confidence 456788899887432 12 34677889999999998874
No 48
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.34 E-value=47 Score=22.74 Aligned_cols=37 Identities=24% Similarity=0.299 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHcccCC---------CceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE---------NKEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e---------gK~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-... .|.+.+..|.+.++|.+.|++
T Consensus 35 t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~ 80 (109)
T 1x4a_A 35 RTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYG 80 (109)
T ss_dssp CHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHH
Confidence 5577899999984321 133667788999999988864
No 49
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.23 E-value=40 Score=22.69 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHc--ccCC----CceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDY--KKNE----NKEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~Y--K~~e----gK~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..| -... .+.+.+..|.+.+.|.+.|++
T Consensus 28 t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~ 70 (99)
T 2cpd_A 28 SEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKA 70 (99)
T ss_dssp CHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHH
Confidence 557789999999 2221 133566678999999888874
No 50
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=30.03 E-value=36 Score=22.88 Aligned_cols=37 Identities=11% Similarity=0.201 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHcccCCC----ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNEN----KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~eg----K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+.+|..|-.... |.+.+..|.+.+.|.+.|++
T Consensus 24 t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~ 64 (96)
T 2kvi_A 24 SKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEC 64 (96)
T ss_dssp CHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHH
Confidence 45778999999965542 34566788999999988874
No 51
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.96 E-value=39 Score=23.46 Aligned_cols=37 Identities=11% Similarity=0.287 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHcccCC----------C--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE----------N--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e----------g--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-... | +.+.+..|.+.+.|.+.|+.
T Consensus 40 te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 88 (116)
T 1x4b_A 40 TEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 88 (116)
T ss_dssp CHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS
T ss_pred CHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh
Confidence 4577899999884321 2 33677789999999998864
No 52
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=29.93 E-value=32 Score=22.77 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHcccCC----------C--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE----------N--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e----------g--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-... | |.+.+..|.+.++|.+.|++
T Consensus 28 t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 76 (95)
T 2ek1_A 28 SIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 76 (95)
T ss_dssp CHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHH
Confidence 5577899999886543 2 22456678899999988874
No 53
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.82 E-value=45 Score=22.52 Aligned_cols=37 Identities=14% Similarity=0.150 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHcccC----------CC--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKN----------EN--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~----------eg--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-.. .| |.+.+..|.+.+.|.+.|++
T Consensus 28 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 76 (105)
T 1x5u_A 28 SEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 76 (105)
T ss_dssp CHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHH
Confidence 557789999999432 12 23667788999999998874
No 54
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.77 E-value=49 Score=21.81 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHcccCC----------C--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE----------N--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e----------g--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-... | +.+.+..|.+.+.|.+.|++
T Consensus 18 t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 66 (95)
T 2dnz_A 18 TEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 66 (95)
T ss_dssp CHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 4567899999884321 1 23667788999999988874
No 55
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=29.76 E-value=58 Score=21.96 Aligned_cols=37 Identities=22% Similarity=0.405 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHcccC-----------CC--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKN-----------EN--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~-----------eg--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+.+|..|-.. .| +.+.+..|.+.+.|.+.|+.
T Consensus 28 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 77 (107)
T 2cph_A 28 NQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNA 77 (107)
T ss_dssp CHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHH
Confidence 567789999998421 12 34677788999999988874
No 56
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=29.54 E-value=58 Score=21.86 Aligned_cols=37 Identities=11% Similarity=0.112 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHcccCC------CceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE------NKEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e------gK~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+.+|..|-... .|.+.+..|.+.+.|.+.|++
T Consensus 40 ~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 82 (101)
T 2la4_A 40 TEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVA 82 (101)
T ss_dssp CHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHH
Confidence 4578899999996543 345667788999999988864
No 57
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.53 E-value=39 Score=24.61 Aligned_cols=37 Identities=16% Similarity=0.193 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHc--ccCC--CceeEeCcccCHHHHHHHHHh
Q 029548 152 HRLAEIRRFFEDY--KKNE--NKEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 152 ~~l~~i~~fF~~Y--K~~e--gK~~~~~g~~~~~~A~~vI~~ 189 (191)
.+.+.+.+.|..| |.++ | -+.+..|.+.+.|.+.+++
T Consensus 25 ~lk~~L~~lF~~yGG~Vl~Vtg-G~AfV~F~~~esA~~A~~~ 65 (96)
T 2diu_A 25 SVSNRLRRLSDNCGGKVLSITG-CSAILRFINQDSAERAQKR 65 (96)
T ss_dssp HHHHHHHHHHHTTTCCEEECCT-TCEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCeeEEEec-CEEEEEECCHHHHHHHHHH
Confidence 4556799999999 5655 4 4556678888888887764
No 58
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=29.13 E-value=48 Score=24.02 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHcccC------------CCceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKN------------ENKEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~------------egK~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+.+|..|-.. ..|.+.+..|.+.+.|.++|++
T Consensus 59 te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ 107 (129)
T 2kxn_B 59 TERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 107 (129)
T ss_dssp CHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 566789999998432 1233667789999999998874
No 59
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.97 E-value=43 Score=22.08 Aligned_cols=37 Identities=24% Similarity=0.268 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHcccCC----CceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE----NKEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e----gK~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+.+|..|-... -+.+.+..|.+.+.|.+.|++
T Consensus 22 t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~ 62 (90)
T 2dnp_A 22 TSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQ 62 (90)
T ss_dssp CHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHH
Confidence 5577899999996543 133566678899999888874
No 60
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=28.80 E-value=32 Score=23.20 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHcccCC------CceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE------NKEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e------gK~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-... .|.+.+..|.+.+.|.+.|++
T Consensus 28 t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~ 70 (99)
T 2cpj_A 28 TEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVE 70 (99)
T ss_dssp CHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHH
T ss_pred CHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHH
Confidence 5677899999986543 344666778888888888764
No 61
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=28.77 E-value=52 Score=22.99 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHcccC------CCceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKN------ENKEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~------egK~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|++.|..|-.. ..|.+.+..|.+.+.|.+.|++
T Consensus 23 te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~ 65 (111)
T 1whx_A 23 LAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRH 65 (111)
T ss_dssp CHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHH
Confidence 567789999998543 2455677788999999888864
No 62
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=28.17 E-value=36 Score=22.72 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHcccCC----------C--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE----------N--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e----------g--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-... | +.+.+..|.+.+.|.+.|++
T Consensus 28 t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 76 (98)
T 2cqp_A 28 SIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 76 (98)
T ss_dssp CHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 4577899999986543 1 23556678999999998864
No 63
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.91 E-value=66 Score=21.40 Aligned_cols=37 Identities=14% Similarity=0.125 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHcccCC-----------C--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE-----------N--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e-----------g--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-... | +.+.+..|.+.+.|.+.|+.
T Consensus 22 t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 71 (99)
T 2div_A 22 DENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK 71 (99)
T ss_dssp CHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHH
Confidence 5577899999986433 1 12566678999999998874
No 64
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=27.45 E-value=49 Score=22.78 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHcccCC----------C--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE----------N--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e----------g--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-... | +.+.+..|.+.+.|.+.|+.
T Consensus 28 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 76 (115)
T 2dgo_A 28 TTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 76 (115)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 4577899999984321 2 23566788999999998874
No 65
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.40 E-value=51 Score=22.22 Aligned_cols=37 Identities=16% Similarity=0.192 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHcccCC----------CceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE----------NKEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e----------gK~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-... +|.+.+..|.+.+.|.+.|++
T Consensus 28 t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~ 74 (103)
T 2cqi_A 28 TEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAA 74 (103)
T ss_dssp CHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHH
Confidence 5577899999984321 234667788999999988874
No 66
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.27 E-value=42 Score=23.06 Aligned_cols=37 Identities=8% Similarity=0.181 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcccC---------CC--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKN---------EN--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~---------eg--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-.. .| +.+.+..|.+.+.|.+.|++
T Consensus 28 ~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 75 (114)
T 2do0_A 28 GWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISM 75 (114)
T ss_dssp CHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 567789999988422 13 23566788899999888874
No 67
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.17 E-value=44 Score=24.56 Aligned_cols=37 Identities=16% Similarity=0.059 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHcccCC------CceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE------NKEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e------gK~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+.+|..|-... +|.+.+..|.+.++|.+.|+.
T Consensus 44 te~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~ 86 (119)
T 2ad9_A 44 TEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNY 86 (119)
T ss_dssp CHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 4567889999996554 355677789999999998874
No 68
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.08 E-value=43 Score=24.57 Aligned_cols=37 Identities=8% Similarity=0.110 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHcccCC------CceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE------NKEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e------gK~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|++.|..|-..+ +|.+.+..|.+.++|.+.|++
T Consensus 40 te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~ 82 (114)
T 2cq2_A 40 SRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVT 82 (114)
T ss_dssp CHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 3477889999996532 566778889999999998875
No 69
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=26.74 E-value=53 Score=22.18 Aligned_cols=37 Identities=14% Similarity=0.248 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHcccC---------C-C--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKN---------E-N--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~---------e-g--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-.. . | +.+.+..|.+.+.|.+.|++
T Consensus 36 t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 84 (106)
T 1p27_B 36 TEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG 84 (106)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 557789999998432 1 2 33566788999999988874
No 70
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=26.67 E-value=39 Score=23.47 Aligned_cols=37 Identities=11% Similarity=0.090 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHcccCC----------C--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE----------N--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e----------g--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-... | |.+.+..|.+.+.|.+.|++
T Consensus 53 t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 101 (118)
T 2khc_A 53 TDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKA 101 (118)
T ss_dssp CHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 4577899999984321 1 33667788999999988874
No 71
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=26.52 E-value=66 Score=23.03 Aligned_cols=37 Identities=3% Similarity=0.119 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHcc-cCC--------CceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYK-KNE--------NKEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK-~~e--------gK~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|- ... .+.+.+..|.+.++|.+.|++
T Consensus 41 te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~ 86 (111)
T 2jvr_A 41 SWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALER 86 (111)
T ss_dssp CHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHH
Confidence 5678899999996 221 234666778899999988864
No 72
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=26.44 E-value=60 Score=21.23 Aligned_cols=37 Identities=14% Similarity=0.110 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcccCC--------C--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE--------N--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e--------g--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-... | +.+.+..|.+.+.|.+.|++
T Consensus 21 t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~ 67 (92)
T 2dgv_A 21 TWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRM 67 (92)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHH
Confidence 5678899999884321 2 23566678899999988874
No 73
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.43 E-value=60 Score=22.22 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHcccCC------CceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE------NKEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e------gK~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+.+|..|-... .|.+.+..|.+.+.|.+.|++
T Consensus 38 t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~ 80 (109)
T 1x4g_A 38 TDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVS 80 (109)
T ss_dssp CHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 4577889999985432 345667788999999888864
No 74
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=26.27 E-value=61 Score=21.73 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcccC------C-----CceeEeCcccCHHHHHHHHH
Q 029548 153 RLAEIRRFFEDYKKN------E-----NKEVAVNDFLPASDAYNSVQ 188 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~------e-----gK~~~~~g~~~~~~A~~vI~ 188 (191)
.-++|+.+|..|-.. + .|.+.+..|.+.+.|.+.|+
T Consensus 30 t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~ 76 (101)
T 1fj7_A 30 SVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE 76 (101)
T ss_dssp CHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh
Confidence 446778888887421 1 23366778889988888875
No 75
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=25.95 E-value=55 Score=22.59 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHcccCC----------C--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE----------N--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e----------g--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-... | |.+.+..|.+.+.|.+.|++
T Consensus 38 t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 86 (115)
T 2cpz_A 38 GDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 86 (115)
T ss_dssp CHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHH
Confidence 4578899999985432 2 22566789999999998864
No 76
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.88 E-value=43 Score=21.60 Aligned_cols=37 Identities=14% Similarity=0.247 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHcccCC------CceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE------NKEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e------gK~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+.+|..|-... .|.+.+..|.+.+.|.+.+++
T Consensus 25 t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~ 67 (85)
T 2ytc_A 25 TETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEK 67 (85)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHT
T ss_pred CHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHH
Confidence 5677899999985332 344667788999999998874
No 77
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=25.57 E-value=68 Score=23.37 Aligned_cols=45 Identities=18% Similarity=0.393 Sum_probs=31.1
Q ss_pred CCCCChhHHHHHHHHHHHcccCCCceeEeCcc-cCHHHHHHHHHhh
Q 029548 146 IKELPPHRLAEIRRFFEDYKKNENKEVAVNDF-LPASDAYNSVQQS 190 (191)
Q Consensus 146 i~Dl~~~~l~~i~~fF~~YK~~egK~~~~~g~-~~~~~A~~vI~~~ 190 (191)
+..+....|+.|.+|+.+.+.-..+...+..| -+.+.+.++|.+|
T Consensus 62 lpnV~s~iL~kVieyc~~h~~~~~~~~~i~~w~vd~~~lfeLi~AA 107 (112)
T 1vcb_B 62 FREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAA 107 (112)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHSSCSSCCCCCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhhhccCCcCCCCCcccCHHHHHHHHHHH
Confidence 34577899999999999888543333233445 4677788887765
No 78
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.36 E-value=50 Score=22.12 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHcccC------CCceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKN------ENKEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~------egK~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+.+|..|-.. ..|.+.+..|.+.+.|.+.|++
T Consensus 26 t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~ 68 (97)
T 1x5p_A 26 TPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAE 68 (97)
T ss_dssp CHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHH
Confidence 447788999988533 2345667788899999888864
No 79
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=25.28 E-value=65 Score=21.95 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHcccC---------C-C--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKN---------E-N--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~---------e-g--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-.. + | |.+.+..|.+.+.|.+.|++
T Consensus 39 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 87 (110)
T 1oo0_B 39 QEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 87 (110)
T ss_dssp CHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 457789999998431 1 2 34667788999999988874
No 80
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.26 E-value=55 Score=23.60 Aligned_cols=37 Identities=16% Similarity=0.071 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHcccC------CCceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKN------ENKEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~------egK~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|++.|..|-.. .+|.+.+..|.+.++|.+.|+.
T Consensus 29 te~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~ 71 (105)
T 1sjq_A 29 TEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNY 71 (105)
T ss_dssp CHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHH
Confidence 456688899998643 2466777889999999998874
No 81
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=24.90 E-value=72 Score=21.63 Aligned_cols=37 Identities=11% Similarity=0.238 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHcccCC----------C--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE----------N--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e----------g--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+.+|..|-... | +.+.+..|.+.+.|.+.|+.
T Consensus 28 t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 76 (111)
T 1x4h_A 28 EEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAA 76 (111)
T ss_dssp CHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHH
Confidence 5677899999885311 2 33677788999999988875
No 82
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.58 E-value=44 Score=22.05 Aligned_cols=37 Identities=24% Similarity=0.331 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHcccCCC----ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNEN----KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~eg----K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-.... |.+.+..|.+.+.|.+.|++
T Consensus 21 t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~ 61 (90)
T 2dnq_A 21 TEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRN 61 (90)
T ss_dssp CHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHH
Confidence 45678999999854331 33566778899999888864
No 83
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.58 E-value=61 Score=22.22 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHcccCC------------------C--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE------------------N--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e------------------g--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-... | |.+.+..|.+.+.|.+.|++
T Consensus 28 t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 84 (113)
T 2cpe_A 28 TLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEW 84 (113)
T ss_dssp CHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 4577889999885443 2 23667788999999998874
No 84
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=24.51 E-value=81 Score=20.26 Aligned_cols=37 Identities=16% Similarity=0.304 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHcccC--------CC--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKN--------EN--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~--------eg--K~~~~~g~~~~~~A~~vI~~ 189 (191)
..++|+.+|..|-.. .| |.+.+..|.+.+.|.+.|++
T Consensus 20 t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~ 66 (81)
T 2krb_A 20 LKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKN 66 (81)
T ss_dssp HHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHH
Confidence 568899999998532 12 34677788999999998874
No 85
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=24.49 E-value=65 Score=22.10 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHcccCC----------Cc--eeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE----------NK--EVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e----------gK--~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-... |+ .+.+..|.+.++|.+.|++
T Consensus 32 te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ 80 (99)
T 4fxv_A 32 TQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80 (99)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHH
Confidence 5578899999984321 22 2566778999999988864
No 86
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=24.17 E-value=43 Score=23.62 Aligned_cols=37 Identities=19% Similarity=0.141 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHcccC------CCceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKN------ENKEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~------egK~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-.. .+|.+.+..|.+.+.|.+.|+.
T Consensus 28 te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~ 70 (104)
T 1wex_A 28 VEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTF 70 (104)
T ss_dssp CHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHH
Confidence 456788999988543 2456777789999999888874
No 87
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=23.92 E-value=1e+02 Score=20.56 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHcc-cCC----------C--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYK-KNE----------N--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK-~~e----------g--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|- ... | |.+.+..|.+.++|.+.|+.
T Consensus 14 te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~ 63 (91)
T 2lxi_A 14 TEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEA 63 (91)
T ss_dssp CHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHh
Confidence 4577889999884 211 2 33677789999999998864
No 88
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=23.56 E-value=37 Score=22.55 Aligned_cols=37 Identities=24% Similarity=0.370 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHcccCC-----C--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE-----N--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e-----g--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-... | +.+.+..|.+.+.|.+.|++
T Consensus 29 t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 72 (96)
T 1fjc_A 29 TEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEE 72 (96)
T ss_dssp CHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 5577899999885332 2 33667788999999998874
No 89
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=23.54 E-value=77 Score=22.04 Aligned_cols=35 Identities=14% Similarity=0.177 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHcccCC----------C--ceeEeCcccCHHHHHHHH
Q 029548 153 RLAEIRRFFEDYKKNE----------N--KEVAVNDFLPASDAYNSV 187 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e----------g--K~~~~~g~~~~~~A~~vI 187 (191)
.-++|+++|..|-... | +.+.+..|.+.+.|.+.|
T Consensus 49 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 95 (124)
T 2jwn_A 49 TAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV 95 (124)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH
Confidence 4677899999984321 2 336677899999999888
No 90
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=23.36 E-value=47 Score=21.92 Aligned_cols=36 Identities=28% Similarity=0.434 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcccCC------CceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE------NKEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e------gK~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..| ... .|.+.+..|.+.+.|.+.|++
T Consensus 18 t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~ 59 (88)
T 1wg1_A 18 NCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQM 59 (88)
T ss_dssp CHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHH
T ss_pred CHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHH
Confidence 457788999999 443 233566778999999988874
No 91
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.17 E-value=62 Score=22.86 Aligned_cols=37 Identities=14% Similarity=0.296 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHcccC------------CCc--eeEeCcccCHHHHHHHHH
Q 029548 152 HRLAEIRRFFEDYKKN------------ENK--EVAVNDFLPASDAYNSVQ 188 (191)
Q Consensus 152 ~~l~~i~~fF~~YK~~------------egK--~~~~~g~~~~~~A~~vI~ 188 (191)
..-++|++||..|... +|+ -+.+..|.+.+.|.+.|+
T Consensus 29 ~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~ 79 (118)
T 2db1_A 29 CSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK 79 (118)
T ss_dssp CCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG
T ss_pred CCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh
Confidence 3567899999998541 232 256678999999998886
No 92
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=23.08 E-value=92 Score=21.83 Aligned_cols=37 Identities=16% Similarity=0.182 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHcccCC---------C--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE---------N--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e---------g--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+.+|..|-... | +.+.+..|.+.++|.+.|++
T Consensus 20 t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~ 67 (116)
T 2fy1_A 20 NEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKD 67 (116)
T ss_dssp CHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHH
Confidence 5677899999985332 1 24667789999999998874
No 93
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=22.85 E-value=88 Score=21.86 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcccCC---------C--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE---------N--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e---------g--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-... | +.+.+..|.+.+.|.+.|++
T Consensus 48 t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 95 (124)
T 2kt5_A 48 SDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQ 95 (124)
T ss_dssp CHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHH
Confidence 4567899999984322 2 33666788999999888874
No 94
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=22.75 E-value=52 Score=21.35 Aligned_cols=37 Identities=11% Similarity=0.234 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHcccCC----------C--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE----------N--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e----------g--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-+.|+++|..|-... | +.+.+..|.+.+.|.+.|+.
T Consensus 24 t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 72 (87)
T 3s7r_A 24 SKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 72 (87)
T ss_dssp CHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS
T ss_pred CHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh
Confidence 4577889999884321 2 23566678999999988853
No 95
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=22.70 E-value=61 Score=22.48 Aligned_cols=37 Identities=11% Similarity=0.311 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHcccCC----------C--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE----------N--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e----------g--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-... | |.+.+..|.+.+.|.+.|+.
T Consensus 38 te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~ 86 (109)
T 2rs2_A 38 TQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 86 (109)
T ss_dssp CHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHS
T ss_pred CHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 4577899999984321 2 33667788999999998864
No 96
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=22.54 E-value=46 Score=23.93 Aligned_cols=21 Identities=14% Similarity=0.332 Sum_probs=18.3
Q ss_pred CCCCChhHHHHHHHHHHHccc
Q 029548 146 IKELPPHRLAEIRRFFEDYKK 166 (191)
Q Consensus 146 i~Dl~~~~l~~i~~fF~~YK~ 166 (191)
..++++...+++++||...|.
T Consensus 67 w~~l~~~~K~~L~~~~~~lk~ 87 (93)
T 3mab_A 67 WHGLDEAKKIELKKFHQSLEG 87 (93)
T ss_dssp GGGSCHHHHHHHHHHHHHHCC
T ss_pred HHHCCHHHHHHHHHHHHHhhc
Confidence 456889999999999999885
No 97
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.38 E-value=65 Score=22.26 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHcccCC----------CceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE----------NKEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e----------gK~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-... .|.+.+..|.+.+.|.+.+++
T Consensus 42 te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~ 88 (109)
T 2err_A 42 RDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREK 88 (109)
T ss_dssp CHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHH
Confidence 5677899999985432 134666778898998888864
No 98
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.34 E-value=41 Score=22.64 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHcccC-------CC--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKN-------EN--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~-------eg--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|... .| +.+.+..|.+.+.|.+.|++
T Consensus 28 t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 2fc8_A 28 TEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEA 73 (102)
T ss_dssp CHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHH
T ss_pred CHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 557788999877432 12 23667789999999998874
No 99
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=22.06 E-value=36 Score=25.20 Aligned_cols=38 Identities=21% Similarity=0.207 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHcccC----------CC--ceeEeCcccCHHHHHHHHHh
Q 029548 152 HRLAEIRRFFEDYKKN----------EN--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 152 ~~l~~i~~fF~~YK~~----------eg--K~~~~~g~~~~~~A~~vI~~ 189 (191)
..-+.|++||..|+.. +| |-+.+..|.+.++|.+.|+.
T Consensus 54 ~te~dL~~~F~~~~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~ 103 (126)
T 2hgm_A 54 CTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK 103 (126)
T ss_dssp CCHHHHHHHTTTSCEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT
T ss_pred CCHHHHHHHHhcCCceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH
Confidence 3567899999999543 13 23666778888888888763
No 100
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.04 E-value=99 Score=20.87 Aligned_cols=37 Identities=14% Similarity=0.130 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHccc-------C-------CCceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKK-------N-------ENKEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~-------~-------egK~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-. . ..|.+.+..|.+.+.|.+.|+.
T Consensus 21 t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 71 (109)
T 2dis_A 21 KREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRK 71 (109)
T ss_dssp CHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTT
T ss_pred CHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHH
Confidence 45778899998832 1 1244777889999999998874
No 101
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.63 E-value=95 Score=20.76 Aligned_cols=37 Identities=14% Similarity=0.204 Sum_probs=26.6
Q ss_pred HHHHHHHHHHH-cccC---------CC--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFED-YKKN---------EN--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~-YK~~---------eg--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|.. |-.. .| |.+.+..|.+.+.|.+.|++
T Consensus 22 t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 70 (104)
T 2dhg_A 22 DDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTE 70 (104)
T ss_dssp CHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHH
Confidence 45678999998 7532 12 33566788999999988874
No 102
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.56 E-value=44 Score=21.62 Aligned_cols=37 Identities=24% Similarity=0.261 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHcccCC----------C--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE----------N--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e----------g--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-... | +.+.+..|.+.+.|.+.|++
T Consensus 18 t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 66 (85)
T 1x4e_A 18 TDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTA 66 (85)
T ss_dssp CHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 4567888998884311 2 23566778898988888864
No 103
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=21.43 E-value=53 Score=22.83 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcccC---------C-C--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKN---------E-N--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~---------e-g--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-.. . | +.+.+..|.+.+.|.+.|+.
T Consensus 39 te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~ 87 (108)
T 2jrs_A 39 TEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 87 (108)
T ss_dssp CHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHH
Confidence 567789999998432 1 2 23566788999999998864
No 104
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=21.41 E-value=98 Score=25.05 Aligned_cols=43 Identities=21% Similarity=0.267 Sum_probs=34.0
Q ss_pred CCCCChhHHHHHHHHHHHcccCCCceeEeCcccCHHHHHHHH-Hh
Q 029548 146 IKELPPHRLAEIRRFFEDYKKNENKEVAVNDFLPASDAYNSV-QQ 189 (191)
Q Consensus 146 i~Dl~~~~l~~i~~fF~~YK~~egK~~~~~g~~~~~~A~~vI-~~ 189 (191)
.+++..-..+.+++|++.|=.+++-.+.+.| .+.+++.+.| ++
T Consensus 145 ~~~l~~it~~~l~~f~~~~y~~~n~~l~v~G-~~~~~~~~~i~~~ 188 (352)
T 3cx5_B 145 YDGVERVSLQDIKDFADKVYTKENLEVSGEN-VVEADLKRFVDES 188 (352)
T ss_dssp CCSSSCCCHHHHHHHHHHHCCGGGEEEEEES-SCHHHHHHHHHHS
T ss_pred hhhhccCCHHHHHHHHHHhCCcCcEEEEEeC-CCHHHHHHHHHHH
Confidence 4556556789999999987777666677778 8999999998 54
No 105
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=21.18 E-value=51 Score=25.96 Aligned_cols=39 Identities=13% Similarity=0.066 Sum_probs=29.8
Q ss_pred cceEEecccccCCeeEEEEEEeeeEeeEeCCCCceE---EEEEecCCcC
Q 029548 94 LDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDK---IIAVCADDPE 139 (191)
Q Consensus 94 LDvlvl~~~p~~pG~vv~vrviG~l~miD~ge~D~K---iIaV~~~dp~ 139 (191)
-+.||.+++|+.+|+.+.+|+.- -+..|. =++|-..||.
T Consensus 35 ~~givFS~RPl~~~E~~~v~I~~-------~~~~wsG~l~~GvT~~dP~ 76 (168)
T 2yue_A 35 CRAITFSARPVRINERICVKFAE-------ISNNWNGGIRFGFTSNDPV 76 (168)
T ss_dssp SCCEEEESSCCCSSCCEEEEEEE-------CCSSSSSCCEEEEESSCGG
T ss_pred CceEEEECCCCcCCCEEEEEEEe-------ecCCcceeEEEeeeecCHH
Confidence 35799999999999999999843 223343 5788888985
No 106
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.17 E-value=65 Score=21.13 Aligned_cols=38 Identities=29% Similarity=0.318 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHcccCC----------C--ceeEeCcccCHHHHHHHHHh
Q 029548 152 HRLAEIRRFFEDYKKNE----------N--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 152 ~~l~~i~~fF~~YK~~e----------g--K~~~~~g~~~~~~A~~vI~~ 189 (191)
..-++|+++|..|-... | +.+.+..|.+.+.|.+.|++
T Consensus 28 ~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 77 (94)
T 2e5h_A 28 LTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 77 (94)
T ss_dssp SCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 35677899999984321 1 23566778999999988864
No 107
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.07 E-value=88 Score=20.87 Aligned_cols=37 Identities=8% Similarity=0.201 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHcccCC----------C--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE----------N--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e----------g--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-... | +.+.+..|.+.+.|.+.|+.
T Consensus 21 ~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 69 (104)
T 1p1t_A 21 TEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69 (104)
T ss_dssp CHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH
Confidence 5577999999995432 1 23566788999999998864
No 108
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=21.06 E-value=85 Score=20.23 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHcccCC----------C--ceeEeCcccCHHHHHHHH
Q 029548 153 RLAEIRRFFEDYKKNE----------N--KEVAVNDFLPASDAYNSV 187 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e----------g--K~~~~~g~~~~~~A~~vI 187 (191)
.-++|+++|..|-... | +.+.+..|.+.+.|.+.+
T Consensus 19 t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~ 65 (89)
T 3ucg_A 19 TAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL 65 (89)
T ss_dssp CHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG
T ss_pred CHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH
Confidence 4577899999984321 2 346677889999998887
No 109
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=20.93 E-value=90 Score=22.41 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHcccCC-----------------CceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE-----------------NKEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e-----------------gK~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+.+|..|-... .+.+.+..|.+.+.|.+.|+.
T Consensus 58 te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 111 (143)
T 3egn_A 58 QEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKE 111 (143)
T ss_dssp CHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHH
Confidence 4567888999886322 234667789999999988874
No 110
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.92 E-value=1.2e+02 Score=20.94 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHcccCC--------CceeEeCcccCHHHHHHHHHh
Q 029548 152 HRLAEIRRFFEDYKKNE--------NKEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 152 ~~l~~i~~fF~~YK~~e--------gK~~~~~g~~~~~~A~~vI~~ 189 (191)
.+-+.|+..|..|-... .+-+.+..|.+.+.|.+.|++
T Consensus 38 ~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~ 83 (112)
T 2dit_A 38 EIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQT 83 (112)
T ss_dssp HHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHH
Confidence 35688999999985432 234566778899999988864
No 111
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.84 E-value=53 Score=22.15 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHcccCC----------CceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE----------NKEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e----------gK~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-... .+.+.+..|.+.+.|.+.|++
T Consensus 28 t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~ 74 (103)
T 2cq3_A 28 RDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREK 74 (103)
T ss_dssp CHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHH
Confidence 4567899999984321 144667788999999988874
No 112
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=20.75 E-value=99 Score=22.41 Aligned_cols=37 Identities=24% Similarity=0.393 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHcccCC----------C--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE----------N--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e----------g--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+.+|..|-... | |.+.+..|.+.+.|.+.|++
T Consensus 83 ~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 131 (158)
T 2kn4_A 83 SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 131 (158)
T ss_dssp CHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 5677899999985321 2 33667788999999988864
No 113
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.72 E-value=90 Score=21.95 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHcccCC-------CceeEeCcccCHHHHHHHHHh
Q 029548 152 HRLAEIRRFFEDYKKNE-------NKEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 152 ~~l~~i~~fF~~YK~~e-------gK~~~~~g~~~~~~A~~vI~~ 189 (191)
..-+.|+.+|..|-... .|-+.+..|.+.+.|.+.|++
T Consensus 29 ~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~ 73 (100)
T 2d9o_A 29 YSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQN 73 (100)
T ss_dssp CCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHT
T ss_pred CCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHh
Confidence 34677889999996432 344677789999999998875
No 114
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.72 E-value=90 Score=21.30 Aligned_cols=37 Identities=11% Similarity=0.256 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHcccCC----------C--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE----------N--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e----------g--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-..+ | |.+.+..|.+.+.|.+.|+.
T Consensus 38 t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 86 (115)
T 2cpx_A 38 TERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHL 86 (115)
T ss_dssp CHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHH
Confidence 5567888999885431 2 34667789999999998874
No 115
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=20.61 E-value=73 Score=22.67 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcccCC----------C--ceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE----------N--KEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e----------g--K~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-... | |.+.+..|.+.+.|.++|++
T Consensus 55 ~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 103 (139)
T 1u6f_A 55 DEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAG 103 (139)
T ss_dssp CHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 3467899999985321 2 23566788999999998874
No 116
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.60 E-value=76 Score=22.51 Aligned_cols=37 Identities=16% Similarity=0.423 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHcccC--------CC--ceeEeCcccCHHHHHHHHH
Q 029548 152 HRLAEIRRFFEDYKKN--------EN--KEVAVNDFLPASDAYNSVQ 188 (191)
Q Consensus 152 ~~l~~i~~fF~~YK~~--------eg--K~~~~~g~~~~~~A~~vI~ 188 (191)
..-+.|++||..|+.. +| |-+.+..|.+.++|.+.|+
T Consensus 28 ~te~dl~~~F~~~~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~ 74 (109)
T 2dnn_A 28 AMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALK 74 (109)
T ss_dssp CCHHHHHHHTTTSCCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHH
T ss_pred CCHHHHHHHhccCCeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh
Confidence 3567899999999431 13 2367778999999988874
No 117
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=20.34 E-value=77 Score=21.99 Aligned_cols=45 Identities=18% Similarity=0.393 Sum_probs=29.3
Q ss_pred CCCCChhHHHHHHHHHHHcccCCCceeEeCcc-cCHHHHHHHHHhh
Q 029548 146 IKELPPHRLAEIRRFFEDYKKNENKEVAVNDF-LPASDAYNSVQQS 190 (191)
Q Consensus 146 i~Dl~~~~l~~i~~fF~~YK~~egK~~~~~g~-~~~~~A~~vI~~~ 190 (191)
+..+....|+.|-+|..+.|.-.++...+..| -+.+.+.++|.+|
T Consensus 47 l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i~~~~l~eLl~AA 92 (97)
T 4ajy_C 47 FREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAA 92 (97)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCCCGGGHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcCCHHHHHHHHHHH
Confidence 34577899999999999877544332223344 3456677777654
No 118
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=20.33 E-value=77 Score=22.64 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHcccCC------CceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE------NKEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e------gK~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+.+|..|-... .|.+.+..|.+.+.|.+.|++
T Consensus 50 te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~ 92 (121)
T 2bz2_A 50 TPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAE 92 (121)
T ss_dssp CHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHH
T ss_pred CHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 4577889999985543 355677788999999988864
No 119
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=20.15 E-value=65 Score=20.71 Aligned_cols=37 Identities=22% Similarity=0.307 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHcccCC-------------CceeEeCcccCHHHHHHHHHh
Q 029548 153 RLAEIRRFFEDYKKNE-------------NKEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 153 ~l~~i~~fF~~YK~~e-------------gK~~~~~g~~~~~~A~~vI~~ 189 (191)
.-++|+++|..|-... .+.+.+..|.+.+.|.+.+++
T Consensus 17 t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 66 (88)
T 4a8x_A 17 TKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKH 66 (88)
T ss_dssp CHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHH
Confidence 4567889999985321 123556678899999888874
No 120
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=20.03 E-value=95 Score=22.07 Aligned_cols=35 Identities=11% Similarity=0.158 Sum_probs=26.6
Q ss_pred HHHHHHHHHccc------CCCceeEeCcccCHHHHHHHHHh
Q 029548 155 AEIRRFFEDYKK------NENKEVAVNDFLPASDAYNSVQQ 189 (191)
Q Consensus 155 ~~i~~fF~~YK~------~egK~~~~~g~~~~~~A~~vI~~ 189 (191)
+.++..|..|-. ...|-+.+..+.+.++|.+.|+.
T Consensus 22 ~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~ 62 (89)
T 2wbr_A 22 PTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMA 62 (89)
T ss_dssp HHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHH
Confidence 678888998843 22466777888999999988874
Done!