BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029549
(191 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5E9J7|ADAT2_BOVIN tRNA-specific adenosine deaminase 2 OS=Bos taurus GN=DEADC1 PE=2
SV=1
Length = 191
Score = 169 bits (429), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 86/170 (50%), Positives = 116/170 (68%), Gaps = 10/170 (5%)
Query: 11 DTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVL 70
+T +M+ A+Q AK ALD+ EVPVGC+++ + +V+ GRN +T+NATRHAEM AID
Sbjct: 21 ETEKWMEQAMQMAKDALDNTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQA 80
Query: 71 LDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSI 130
LD ++ G S SE+ F LYVT EPCIMCAAAL ++ I V YGC NE+FGGCGS+
Sbjct: 81 LDWCRRRGRSPSEV---FEHTVLYVTVEPCIMCAAALRLMRIPLVVYGCQNERFGGCGSV 137
Query: 131 LSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQGNPNAPK 180
L + +D + ++G K F+CT G A EAV + ++FY+Q NPNAPK
Sbjct: 138 LDIASAD--LPSTG-----KPFQCTPGYRAEEAVEMLKTFYKQENPNAPK 180
>sp|Q7Z6V5|ADAT2_HUMAN tRNA-specific adenosine deaminase 2 OS=Homo sapiens GN=ADAT2 PE=1
SV=1
Length = 191
Score = 166 bits (419), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 83/170 (48%), Positives = 117/170 (68%), Gaps = 10/170 (5%)
Query: 11 DTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVL 70
+T +M+ A+ AK AL++ EVPVGC+++ + +V+ GRN +T+NATRHAEM AID +
Sbjct: 21 ETEKWMEEAMHMAKEALENTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQV 80
Query: 71 LDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSI 130
LD +++G S SE+ F LYVT EPCIMCAAAL ++ I V YGC NE+FGGCGS+
Sbjct: 81 LDWCRQSGKSPSEV---FEHTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSV 137
Query: 131 LSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQGNPNAPK 180
L++ +D + N+G + F+C G A EAV + ++FY+Q NPNAPK
Sbjct: 138 LNIASAD--LPNTG-----RPFQCIPGYRAEEAVEMLKTFYKQENPNAPK 180
>sp|Q6P6J0|ADAT2_MOUSE tRNA-specific adenosine deaminase 2 OS=Mus musculus GN=Adat2 PE=2
SV=1
Length = 191
Score = 166 bits (419), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 83/170 (48%), Positives = 117/170 (68%), Gaps = 10/170 (5%)
Query: 11 DTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVL 70
+T +M+ A++ AK AL+++EVPVGC+++ + +V+ GRN +T+NATRHAEM AID +
Sbjct: 21 ETEKWMEEAMRMAKEALENIEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQV 80
Query: 71 LDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSI 130
LD ++G S S + F LYVT EPCIMCAAAL ++ I V YGC NE+FGGCGS+
Sbjct: 81 LDWCHQHGQSPSTV---FEHTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSV 137
Query: 131 LSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQGNPNAPK 180
L++ +D + N+G + F+C G A EAV L ++FY+Q NPNAPK
Sbjct: 138 LNIASAD--LPNTG-----RPFQCIPGYRAEEAVELLKTFYKQENPNAPK 180
>sp|Q0P4H0|ADAT2_XENTR tRNA-specific adenosine deaminase 2 OS=Xenopus tropicalis GN=adat2
PE=2 SV=1
Length = 170
Score = 157 bits (398), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 82/168 (48%), Positives = 108/168 (64%), Gaps = 14/168 (8%)
Query: 15 FMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQW 74
+M A Q A+ AL++ EVPVGC+++ D +V+ GRN ET+NATRHAEM AID +LD
Sbjct: 8 WMHKAFQMAQDALNNGEVPVGCLMVYDNQVVGKGRNEVNETKNATRHAEMVAIDQVLDWC 67
Query: 75 QKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLH 134
+KN ++ F LYVT EPCIMCA AL +L I V YGC NE+FGGCGS+L++
Sbjct: 68 EKNSKKSRDV---FENIVLYVTVEPCIMCAGALRLLKIPLVVYGCRNERFGGCGSVLNV- 123
Query: 135 LSDSKMLNSGDVLGRKG--FKCTGGVMASEAVSLFRSFYEQGNPNAPK 180
+GD + G FK GG A +AV L ++FY+Q NPNAP+
Sbjct: 124 --------AGDNIPDTGTEFKYIGGYQAEKAVELLKTFYKQENPNAPR 163
>sp|Q4V7V8|ADAT2_XENLA tRNA-specific adenosine deaminase 2 OS=Xenopus laevis GN=adat2 PE=2
SV=1
Length = 175
Score = 155 bits (393), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 108/168 (64%), Gaps = 14/168 (8%)
Query: 15 FMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQW 74
+M A Q A+ AL++ EVPVGC+++ +V+ GRN ET+NAT+HAEM AID +LD
Sbjct: 13 WMHKAFQMAQDALNNGEVPVGCLMVYGNQVVGKGRNEVNETKNATQHAEMVAIDQVLDWC 72
Query: 75 QKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLH 134
+ N +++ F LYVT EPCIMCA AL +L I V YGC NE+FGGCGS+L++
Sbjct: 73 EMNSKKSTDV---FENIVLYVTVEPCIMCAGALRLLKIPLVVYGCRNERFGGCGSVLNV- 128
Query: 135 LSDSKMLNSGDVLGRKG--FKCTGGVMASEAVSLFRSFYEQGNPNAPK 180
SGD + G FKC GG A +A+ L ++FY+Q NPNAPK
Sbjct: 129 --------SGDDIPDTGTKFKCIGGYQAEKAIELLKTFYKQENPNAPK 168
>sp|Q5RIV4|ADAT2_DANRE tRNA-specific adenosine deaminase 2 OS=Danio rerio GN=adat2 PE=2
SV=2
Length = 214
Score = 154 bits (388), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 83/170 (48%), Positives = 107/170 (62%), Gaps = 14/170 (8%)
Query: 14 AFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQ 73
+M A A AL++ EVPVGC+++ + ++I GRN ET+NATRHAEM A+D +LD
Sbjct: 23 TWMAKAFDMAVEALENGEVPVGCLMVYNNEIIGKGRNEVNETKNATRHAEMVALDQVLD- 81
Query: 74 WQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSL 133
W + L + + E + LYVT EPCIMCAAAL +L I V YGC NE+FGGCGS+L +
Sbjct: 82 WCR--LREKDCKEVCEQTVLYVTVEPCIMCAAALRLLRIPFVVYGCKNERFGGCGSVLDV 139
Query: 134 HLSDSKMLNSGDVLGRKG--FKCTGGVMASEAVSLFRSFYEQGNPNAPKP 181
S D L G FKC G A EAV + ++FY+Q NPNAPKP
Sbjct: 140 ---------SSDHLPHTGTSFKCIAGYRAEEAVEMLKTFYKQENPNAPKP 180
>sp|P47058|TAD2_YEAST tRNA-specific adenosine deaminase subunit TAD2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAD2 PE=1
SV=1
Length = 250
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 93/171 (54%), Gaps = 9/171 (5%)
Query: 13 LAFMDLAIQQAKLALDSLEVPVGCVILED--GKVIAAGRNRTTETRNATRHAEMEAIDVL 70
+ M A++ A+ ALD E PV C+ + G+V+A G N T ++ HAE ID +
Sbjct: 4 IKHMRTAVRLARYALDHDETPVACIFVHTPTGQVMAYGMNDTNKSLTGVAHAEFMGIDQI 63
Query: 71 LDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSI 130
K L + + F LYVT EPCIMCA+AL L I +V +GC NE+FGG G++
Sbjct: 64 -----KAMLGSRGVVDVFKDITLYVTVEPCIMCASALKQLDIGKVVFGCGNERFGGNGTV 118
Query: 131 LSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQGNPNAPKP 181
LS++ ++ + G++ G++ EA+ L R FY + N APKP
Sbjct: 119 LSVNHDTCTLVPKNN--SAAGYESIPGILRKEAIMLLRYFYVRQNERAPKP 167
>sp|O94642|TAD2_SCHPO tRNA-specific adenosine deaminase subunit tad2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tad2 PE=3 SV=2
Length = 389
Score = 110 bits (276), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 80/150 (53%), Gaps = 18/150 (12%)
Query: 33 PVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCC 92
P CV + G+VI G N T + + RHAE+ AI+ +L+ + A F +
Sbjct: 238 PGSCVFVYKGEVIGRGFNETNCSLSGIRHAELIAIEKILEHYP---------ASVFKETT 288
Query: 93 LYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGF 152
LYVT EPC+MCAAAL L IK VY+GC N++FGGCGS+ S++ S +
Sbjct: 289 LYVTVEPCLMCAAALKQLHIKAVYFGCGNDRFGGCGSVFSINKDQSI---------DPSY 339
Query: 153 KCTGGVMASEAVSLFRSFYEQGNPNAPKPH 182
G+ SEAV L R FY Q N AP P
Sbjct: 340 PVYPGLFYSEAVMLMREFYVQENVKAPVPQ 369
>sp|P68999|TADA_STRP1 tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M1 GN=tadA PE=3 SV=1
Length = 171
Score = 98.2 bits (243), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 89/160 (55%), Gaps = 18/160 (11%)
Query: 15 FMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQW 74
FM A+++A+ +L E+P+GCVI++DG++I G N E+ A HAEM AI
Sbjct: 11 FMQEALKEAEKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAI------- 63
Query: 75 QKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLH 134
N + E + L+VT EPC+MC+ A+ + I V YG +N+KFGG S+ +
Sbjct: 64 --NEANAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGVDSLYQI- 120
Query: 135 LSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQG 174
L+D ++ + V G++A++ ++ ++F+ QG
Sbjct: 121 LTDERLNHRVQV--------ERGLLAADCANIMQTFFRQG 152
>sp|P0DA21|TADA_STRPQ tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M3 (strain SSI-1) GN=tadA PE=3 SV=1
Length = 171
Score = 98.2 bits (243), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 89/160 (55%), Gaps = 18/160 (11%)
Query: 15 FMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQW 74
FM A+++A+ +L E+P+GCVI++DG++I G N E+ A HAEM AI
Sbjct: 11 FMQEALKEAEKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAI------- 63
Query: 75 QKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLH 134
N + E + L+VT EPC+MC+ A+ + I V YG +N+KFGG S+ +
Sbjct: 64 --NEANAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGADSLYQI- 120
Query: 135 LSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQG 174
L+D ++ + V G++A++ ++ ++F+ QG
Sbjct: 121 LTDERLNHRVQV--------ERGLLAADCANIMQTFFRQG 152
>sp|Q5XE14|TADA_STRP6 tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=tadA
PE=1 SV=2
Length = 171
Score = 98.2 bits (243), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 89/160 (55%), Gaps = 18/160 (11%)
Query: 15 FMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQW 74
FM A+++A+ +L E+P+GCVI++DG++I G N E+ A HAEM AI
Sbjct: 11 FMQEALKEAEKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAI------- 63
Query: 75 QKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLH 134
N + E + L+VT EPC+MC+ A+ + I V YG +N+KFGG S+ +
Sbjct: 64 --NEANAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGADSLYQI- 120
Query: 135 LSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQG 174
L+D ++ + V G++A++ ++ ++F+ QG
Sbjct: 121 LTDERLNHRVQV--------ERGLLAADCANIMQTFFRQG 152
>sp|P0DA20|TADA_STRP3 tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M3 (strain ATCC BAA-595 / MGAS315) GN=tadA PE=3
SV=1
Length = 171
Score = 98.2 bits (243), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 89/160 (55%), Gaps = 18/160 (11%)
Query: 15 FMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQW 74
FM A+++A+ +L E+P+GCVI++DG++I G N E+ A HAEM AI
Sbjct: 11 FMQEALKEAEKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAI------- 63
Query: 75 QKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLH 134
N + E + L+VT EPC+MC+ A+ + I V YG +N+KFGG S+ +
Sbjct: 64 --NEANAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGADSLYQI- 120
Query: 135 LSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQG 174
L+D ++ + V G++A++ ++ ++F+ QG
Sbjct: 121 LTDERLNHRVQV--------ERGLLAADCANIMQTFFRQG 152
>sp|Q8P2R7|Y196_STRP8 Uncharacterized deaminase spyM18_0196 OS=Streptococcus pyogenes
serotype M18 (strain MGAS8232) GN=spyM18_0196 PE=3 SV=1
Length = 159
Score = 97.8 bits (242), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 89/160 (55%), Gaps = 18/160 (11%)
Query: 15 FMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQW 74
FM A+++A+ +L E+P+GCVI++DG++I G N E+ A HAEM AI
Sbjct: 11 FMQEALKEAEKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAI------- 63
Query: 75 QKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLH 134
N + E + L+VT EPC+MC+ A+ + I V YG +N+KFGG S+ +
Sbjct: 64 --NEANAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGADSLYQI- 120
Query: 135 LSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQG 174
L+D ++ + V G++A++ ++ ++F+ QG
Sbjct: 121 LTDERLNHRVQV--------ERGLLAADCANIMQTFFRQG 152
>sp|Q92G39|Y1285_RICCN Uncharacterized deaminase RC1285 OS=Rickettsia conorii (strain ATCC
VR-613 / Malish 7) GN=RC1285 PE=3 SV=2
Length = 153
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 84/160 (52%), Gaps = 20/160 (12%)
Query: 16 MDLAIQQAKLALDSLEVPVGCVILE--DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQ 73
M+ A++QAK+A D EVPVG V+++ K+IA+ N T E NA HAE+ AI+ +
Sbjct: 1 MEQALKQAKIAFDKNEVPVGAVVVDRLHQKIIASTHNNTEEKNNALYHAEIIAINEACNL 60
Query: 74 WQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSL 133
L+ +I YVT EPC MCAAA++ +K ++YG ++ K G S L
Sbjct: 61 ISSKNLNDYDI---------YVTLEPCAMCAAAIAHSRLKRLFYGASDSKHGVVESNL-- 109
Query: 134 HLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQ 173
+ NS R + G++A ++ L + F+++
Sbjct: 110 -----RYFNSSACFHRP--EIYSGILAEDSGLLMKEFFKR 142
>sp|Q9S7I0|TADA_ARATH tRNA-specific adenosine deaminase, chloroplastic OS=Arabidopsis
thaliana GN=TADA PE=1 SV=1
Length = 1307
Score = 80.5 bits (197), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 63/122 (51%), Gaps = 15/122 (12%)
Query: 15 FMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAI---DVLL 71
FM A+ +AK A D+ EVPVG V++ DGK+IA G N E R++T HAEM I L
Sbjct: 1113 FMREALVEAKKAADTWEVPVGAVLVHDGKIIARGYNLVEELRDSTAHAEMICIREGSKAL 1172
Query: 72 DQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSIL 131
W + + LYVT EPC MCA A+ + + +G N+ G GS +
Sbjct: 1173 RSW------------RLADTTLYVTLEPCPMCAGAILQARVNTLVWGAPNKLLGADGSWI 1220
Query: 132 SL 133
L
Sbjct: 1221 RL 1222
>sp|Q4UJW9|Y1319_RICFE Uncharacterized deaminase RF_1319 OS=Rickettsia felis (strain ATCC
VR-1525 / URRWXCal2) GN=RF_1319 PE=3 SV=2
Length = 144
Score = 80.5 bits (197), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 83/160 (51%), Gaps = 20/160 (12%)
Query: 16 MDLAIQQAKLALDSLEVPVGCVILE--DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQ 73
M+ A++QA +A D EVPVG VI++ + K+I + N T E NA HAE+ AI+ +
Sbjct: 1 MEQALKQAGIAFDKNEVPVGAVIVDRLNQKIIVSSHNNTEEKNNALYHAEIIAINEACNL 60
Query: 74 WQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSL 133
L+ +I YVT EPC MCAAA++ +K ++YG ++ K G S L
Sbjct: 61 ISSKNLNDYDI---------YVTLEPCAMCAAAIAHSRLKRLFYGASDSKHGAVESNL-- 109
Query: 134 HLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQ 173
+ NS R + G++A ++ L + F+++
Sbjct: 110 -----RYFNSSVCFYRP--EIYSGILAEDSRLLMKEFFKR 142
>sp|O67050|TADA_AQUAE tRNA-specific adenosine deaminase OS=Aquifex aeolicus (strain VF5)
GN=tadA PE=1 SV=1
Length = 151
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 9/119 (7%)
Query: 15 FMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQW 74
F+ +A+++AK A + EVPVG +I+++G++I+ N E ++ T HAEM AI +
Sbjct: 6 FLKVALREAKRAFEKGEVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRL 65
Query: 75 QKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSL 133
L C LYVT EPCIMC+ AL + I++V + ++K GG S+ ++
Sbjct: 66 NTKYLEG---------CELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNI 115
>sp|Q1RGK7|Y1426_RICBR Uncharacterized deaminase RBE_1426 OS=Rickettsia bellii (strain
RML369-C) GN=RBE_1426 PE=3 SV=2
Length = 145
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 80/160 (50%), Gaps = 20/160 (12%)
Query: 16 MDLAIQQAKLALDSLEVPVGCVIL--EDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQ 73
M A++QA++A EVPVG VI+ E+ K+I+ N T E NA HAE+ AI+
Sbjct: 1 MREALKQAEIAFSKNEVPVGAVIVDRENQKIISKSYNNTEEKNNALYHAEIIAINEACRI 60
Query: 74 WQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSL 133
LS +I YVT EPC MCAAA++ +K ++YG ++ K G S L
Sbjct: 61 ISSKNLSDYDI---------YVTLEPCAMCAAAIAHSRLKRLFYGASDSKHGAVESNL-- 109
Query: 134 HLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQ 173
+ NS R + G+ A ++ L + F+++
Sbjct: 110 -----RYFNSKACFHRP--EIYSGIFAEDSALLMKGFFKK 142
>sp|Q9ZCC6|Y831_RICPR Uncharacterized deaminase RP831 OS=Rickettsia prowazekii (strain
Madrid E) GN=RP831 PE=3 SV=1
Length = 148
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 81/160 (50%), Gaps = 20/160 (12%)
Query: 16 MDLAIQQAKLALDSLEVPVGCVIL--EDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQ 73
M+ A++QA+LA D EVPVG VI+ + K+I + N E +N HAE+ AI+ +
Sbjct: 1 MEQALKQARLAFDKNEVPVGVVIVCRLNQKIIVSSHNNIEEKKNPLCHAEIIAINTACNL 60
Query: 74 WQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSL 133
L+ +I YVT EPC MCA+A+S +K ++YG ++ K G S L
Sbjct: 61 ISSKNLNDYDI---------YVTLEPCAMCASAISHSRLKRLFYGASDSKHGAVESNL-- 109
Query: 134 HLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQ 173
+ NS R + G+++ + L + F+++
Sbjct: 110 -----RYFNSNSCFYRP--EIYSGILSEHSRFLMQEFFQR 142
>sp|P68397|TADA_SHIFL tRNA-specific adenosine deaminase OS=Shigella flexneri GN=tadA PE=3
SV=2
Length = 167
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 26/162 (16%)
Query: 15 FMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQW 74
+M A+ AK A D EVPVG V++ + +VI G NR + T HAE+ A+
Sbjct: 11 WMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMAL------- 63
Query: 75 QKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLH 134
++ GL + LYVT EPC+MCA A+ I V +G + K G GS++
Sbjct: 64 RQGGLVMQNY--RLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLM--- 118
Query: 135 LSDSKMLNSGDVLGRKGF----KCTGGVMASEAVSLFRSFYE 172
DVL G + T G++A E +L F+
Sbjct: 119 ----------DVLHHPGMNHRVEITEGILADECAALLSDFFR 150
>sp|P68398|TADA_ECOLI tRNA-specific adenosine deaminase OS=Escherichia coli (strain K12)
GN=tadA PE=1 SV=2
Length = 167
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 26/162 (16%)
Query: 15 FMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQW 74
+M A+ AK A D EVPVG V++ + +VI G NR + T HAE+ A+
Sbjct: 11 WMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMAL------- 63
Query: 75 QKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLH 134
++ GL + LYVT EPC+MCA A+ I V +G + K G GS++
Sbjct: 64 RQGGLVMQNY--RLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLM--- 118
Query: 135 LSDSKMLNSGDVLGRKGF----KCTGGVMASEAVSLFRSFYE 172
DVL G + T G++A E +L F+
Sbjct: 119 ----------DVLHHPGMNHRVEITEGILADECAALLSDFFR 150
>sp|Q8FF24|TADA_ECOL6 tRNA-specific adenosine deaminase OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=tadA PE=3 SV=2
Length = 167
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 26/162 (16%)
Query: 15 FMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQW 74
+M A+ AK A D EVPVG V++ + +VI G NR + T HAE+ A+
Sbjct: 11 WMRHAMTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMAL------- 63
Query: 75 QKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLH 134
++ GL + LYVT EPC+MCA A+ I V +G + K G GS++
Sbjct: 64 RQGGLVMQNY--RLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLM--- 118
Query: 135 LSDSKMLNSGDVLGRKGF----KCTGGVMASEAVSLFRSFYE 172
DVL G + T G++A E +L F+
Sbjct: 119 ----------DVLHHPGMNHRVEITEGILADECAALLSDFFR 150
>sp|Q8XA44|TADA_ECO57 tRNA-specific adenosine deaminase OS=Escherichia coli O157:H7
GN=tadA PE=3 SV=2
Length = 167
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 26/162 (16%)
Query: 15 FMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQW 74
+M A+ AK A D EVPVG V++ + +VI G NR + T HAE+ A+
Sbjct: 11 WMRHAMTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMAL------- 63
Query: 75 QKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLH 134
++ GL + LYVT EPC+MCA A+ I V +G + K G GS++
Sbjct: 64 RQGGLVMQNY--RLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLM--- 118
Query: 135 LSDSKMLNSGDVLGRKGF----KCTGGVMASEAVSLFRSFYE 172
DVL G + T G++A E +L F+
Sbjct: 119 ----------DVLHHPGMNHRVEITEGILADECAALLSDFFR 150
>sp|Q68Y02|Y819_RICTY Uncharacterized deaminase RT0819 OS=Rickettsia typhi (strain ATCC
VR-144 / Wilmington) GN=RT0819 PE=3 SV=1
Length = 148
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 81/160 (50%), Gaps = 20/160 (12%)
Query: 16 MDLAIQQAKLALDSLEVPVGCVILE--DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQ 73
M+ A++QA+LA D EVPVG VI+ + K+I + N E NA HAE+ AI+ +
Sbjct: 1 MEQALKQARLAFDKNEVPVGVVIVYRLNQKIIVSSHNNIEEKNNALCHAEIIAINEACNL 60
Query: 74 WQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSL 133
L+ +I YVT EPC MCA+A+S +K ++YG ++ K G S L
Sbjct: 61 ISSKNLNDYDI---------YVTLEPCAMCASAISHSRLKRLFYGASDSKQGAVESNL-- 109
Query: 134 HLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQ 173
+ NS R + G+++ + L + F+++
Sbjct: 110 -----RYFNSSACFHRP--EIYSGILSEHSRFLMKEFFQK 142
>sp|Q7CQ08|TADA_SALTY tRNA-specific adenosine deaminase OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=tadA PE=3 SV=2
Length = 172
Score = 73.6 bits (179), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 74/166 (44%), Gaps = 26/166 (15%)
Query: 11 DTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVL 70
D +M A+ AK A D EVPVG V++ + +VI G NR + T HAE+ A+
Sbjct: 7 DHEYWMRHALTLAKRAWDEREVPVGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMAL--- 63
Query: 71 LDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSI 130
++ GL + LYVT EPC+MCA A+ I V +G + K G GS+
Sbjct: 64 ----RQGGLVLQNY--RLLDTTLYVTLEPCVMCAGAMVHSRIGRVVFGARDAKTGAAGSL 117
Query: 131 LSLHLSDSKMLNSGDVLGRKGF----KCTGGVMASEAVSLFRSFYE 172
+ DVL G + GV+ E +L F+
Sbjct: 118 I-------------DVLHHPGMNHRVEIIEGVLRDECATLLSDFFR 150
>sp|Q8XGY4|TADA_SALTI tRNA-specific adenosine deaminase OS=Salmonella typhi GN=tadA PE=3
SV=2
Length = 172
Score = 73.6 bits (179), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 74/166 (44%), Gaps = 26/166 (15%)
Query: 11 DTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVL 70
D +M A+ AK A D EVPVG V++ + +VI G NR + T HAE+ A+
Sbjct: 7 DHEYWMRHALTLAKRAWDEREVPVGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMAL--- 63
Query: 71 LDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSI 130
++ GL + LYVT EPC+MCA A+ I V +G + K G GS+
Sbjct: 64 ----RQGGLVLQNY--RLLDTTLYVTLEPCVMCAGAMVHSRIGRVVFGARDAKTGAAGSL 117
Query: 131 LSLHLSDSKMLNSGDVLGRKGF----KCTGGVMASEAVSLFRSFYE 172
+ DVL G + GV+ E +L F+
Sbjct: 118 I-------------DVLHHPGMNHRVEIIEGVLRDECATLLSDFFR 150
>sp|P21335|TADA_BACSU tRNA-specific adenosine deaminase OS=Bacillus subtilis (strain 168)
GN=tadA PE=1 SV=1
Length = 161
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 82/163 (50%), Gaps = 26/163 (15%)
Query: 15 FMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRN-RTTETRNATRHAEMEAID---VL 70
+M AI++AK A + EVP+G V++ +G++IA N R TE R+ HAEM ID
Sbjct: 7 YMKEAIKEAKKAEEKGEVPIGAVLVINGEIIARAHNLRETEQRSIA-HAEMLVIDEACKA 65
Query: 71 LDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSI 130
L W+ G + LYVT EPC MCA A+ + +++V +G + K GGC
Sbjct: 66 LGTWRLEGAT------------LYVTLEPCPMCAGAVVLSRVEKVVFGAFDPK-GGCSGT 112
Query: 131 LSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQ 173
L L + + + +V+ GV+ E + +F+ +
Sbjct: 113 LMNLLQEERFNHQAEVV--------SGVLEEECGGMLSAFFRE 147
>sp|C1D1Q9|TILS_DEIDV tRNA(Ile)-lysidine synthase OS=Deinococcus deserti (strain VCD115 /
DSM 17065 / LMG 22923) GN=tilS PE=3 SV=1
Length = 533
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 79/162 (48%), Gaps = 26/162 (16%)
Query: 16 MDLAIQQAKLALDSLEVPVGCVIL-EDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQW 74
M A+ A+ A + EVPVG V+L G++I +GRN + + TRHAE+ A+
Sbjct: 383 MGEALGLAREAALAQEVPVGAVVLGPGGRIIGSGRNTSRADSDMTRHAELAALRA----- 437
Query: 75 QKNGLSQSEIAEKF-SKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSL 133
+ +E+ + + C L VT EPC MC A ++ + YG +N K G G +
Sbjct: 438 -----ATAELGTAYLTGCTLVVTLEPCPMCLGAALEARVERIVYGASNPKAGALGGV--- 489
Query: 134 HLSDSKMLNS--GDVLGRKGFKCTGGVMASEAVSLFRSFYEQ 173
S +L+S G V TGGV A +A + R +++
Sbjct: 490 ----SDLLSSHWGHVPA-----VTGGVRAQDAARVLRDSFQE 522
>sp|O59834|FCYS_SCHPO Probable cytosine deaminase OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPCC965.14c PE=3 SV=1
Length = 162
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 85/181 (46%), Gaps = 31/181 (17%)
Query: 4 SGEEWSPDTLAFMDLAIQQAKLALDSLEVPVGCVIL-EDGKVIAAGRNRTTETRNATRHA 62
S E S LA++ AI+ ++ A D + P GC+I+ E+ VI + NR + + T+HA
Sbjct: 2 SSTELSEKDLAYLREAIKVSQQARDEGQHPFGCIIVDENDNVIMSAGNRVPDG-DVTQHA 60
Query: 63 EMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANE 122
E A+ ++ ++ KC LY + EPC MC+ A+ GI+ + +G +NE
Sbjct: 61 ETRAVGLI-----------TKTRRDLEKCTLYTSTEPCAMCSGAIFWSGIRRMIFGLSNE 109
Query: 123 -------KFGGCGSILSLHLSDSKMLNSGDVLGRKG--FKCTGGVMASEAVSLFRSFYEQ 173
K G C + +NS D+LG + G + EA+ + F++
Sbjct: 110 NLIKLTQKSGECPPLY---------INSRDILGAASHPIEVVGPYIEDEAIIPHKGFWDG 160
Query: 174 G 174
G
Sbjct: 161 G 161
>sp|P44931|TADA_HAEIN tRNA-specific adenosine deaminase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=tadA PE=3 SV=1
Length = 173
Score = 63.5 bits (153), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 19/144 (13%)
Query: 31 EVPVGCVILEDGK-VIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFS 89
E+PVG V+++D + +I G N + + T HAE+ A+ +NG + +
Sbjct: 30 EIPVGAVLVDDARNIIGEGWNLSIVQSDPTAHAEIIAL--------RNGAKNIQ-NYRLL 80
Query: 90 KCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGR 149
LYVT EPC MCA A+ IK + +G ++ K G GS H D +N
Sbjct: 81 NSTLYVTLEPCTMCAGAILHSRIKRLVFGASDYKTGAIGS--RFHFFDDYKMNH------ 132
Query: 150 KGFKCTGGVMASEAVSLFRSFYEQ 173
+ T GV+A E +F+++
Sbjct: 133 -TLEVTSGVLAEECSQKLSTFFQK 155
>sp|Q9RV23|TILS_DEIRA tRNA(Ile)-lysidine synthase OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=tilS PE=3 SV=2
Length = 582
Score = 60.5 bits (145), Expect = 7e-09, Method: Composition-based stats.
Identities = 57/158 (36%), Positives = 72/158 (45%), Gaps = 25/158 (15%)
Query: 31 EVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFS 89
EVPVG V+L DG+++ GRN + E + T HAE+ A+ GL + S
Sbjct: 423 EVPVGAVVLNADGEIVGRGRNTSREDGDMTCHAELAALRE-----AAAGLGTPYL----S 473
Query: 90 KCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGR 149
C L VT EPC MC A I + YG AN K G G + L L+D
Sbjct: 474 DCTLVVTLEPCPMCLGAALEARIGHIVYGAANPKAGALGGVSDL-LAD-----------H 521
Query: 150 KGFKCT--GGVMASEAVSLFRS-FYEQGNPNAPKPHRP 184
G++ T GGV A EA L R F E +A P P
Sbjct: 522 WGWRPTVQGGVRAGEAARLLREVFGEVRRRSADTPQTP 559
>sp|Q72IF6|TILS_THET2 tRNA(Ile)-lysidine synthase OS=Thermus thermophilus (strain HB27 /
ATCC BAA-163 / DSM 7039) GN=tilS PE=3 SV=1
Length = 507
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 59/143 (41%), Gaps = 38/143 (26%)
Query: 31 EVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSK 90
EVPVG V++ G+V+ A NR R+ T HAEM L E +
Sbjct: 391 EVPVGAVLVLPGRVLRA-HNRVEGLRDPTAHAEM--------------LLLREAGPEARG 435
Query: 91 CCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRK 150
LYVT EPC+MC AL+ G+ EV YG N K G L R
Sbjct: 436 GRLYVTLEPCLMCHHALAQAGV-EVVYGAENLKEGA--------------------LTRF 474
Query: 151 GF--KCTGGVMASEAVSLFRSFY 171
G + GGV E L R F+
Sbjct: 475 GLPTRARGGVRERECAKLLRDFF 497
>sp|Q5SI38|TILS_THET8 tRNA(Ile)-lysidine synthase OS=Thermus thermophilus (strain HB8 /
ATCC 27634 / DSM 579) GN=tilS PE=3 SV=1
Length = 507
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 59/143 (41%), Gaps = 38/143 (26%)
Query: 31 EVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSK 90
EVPVG V++ G+V+ A NR R+ T HAEM L E +
Sbjct: 391 EVPVGAVLVLPGRVLRA-HNRVEGLRDPTAHAEM--------------LLLREAGPEARG 435
Query: 91 CCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRK 150
LYVT EPC+MC AL+ G+ EV YG N K G L R
Sbjct: 436 GRLYVTLEPCLMCHHALAQAGV-EVVYGAENLKEGA--------------------LTRF 474
Query: 151 GF--KCTGGVMASEAVSLFRSFY 171
G + GGV E L R F+
Sbjct: 475 GLPTRARGGVRERECAKLLRDFF 497
>sp|O34598|GUAD_BACSU Guanine deaminase OS=Bacillus subtilis (strain 168) GN=guaD PE=1
SV=1
Length = 156
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 33 PVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCC 92
P G VI++DG +IA G+N T + + T HAE+ AI + A + C
Sbjct: 25 PFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAI---------RKACKVLGAYQLDDCI 75
Query: 93 LYVTCEPCIMCAAALSILGIKEVYYG 118
LY +CEPC MC A+ K V+Y
Sbjct: 76 LYTSCEPCPMCLGAIYWARPKAVFYA 101
>sp|Q89AM8|Y236_BUCBP Uncharacterized protein bbp_236 OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=bbp_236 PE=3 SV=1
Length = 162
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 24/169 (14%)
Query: 15 FMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQW 74
FM AI AK++ EVPVG V++ + +I G N + + T HAE++A+
Sbjct: 8 FMKCAIFLAKISEMIGEVPVGAVLVFNNTIIGKGLNSSILNHDPTAHAEIKAL------- 60
Query: 75 QKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCAN---EKFGGCGSIL 131
+NG ++ + LYVT EPCIMC A+ I + +G +K+ C +
Sbjct: 61 -RNG-AKFLKNYRLLHTTLYVTLEPCIMCYGAIIHSRISRLVFGAKYKNLQKYICCKN-- 116
Query: 132 SLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQGNPNAPK 180
H +K + T V+ SE +L SF+++ A K
Sbjct: 117 --HFFINKNFRKISI--------TQEVLESECSNLLSSFFKRKRKIATK 155
>sp|P78594|FCA1_CANAX Cytosine deaminase OS=Candida albicans GN=FCA1 PE=3 SV=1
Length = 150
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 11/104 (10%)
Query: 16 MDLAIQQAKLALDSLEVPVG-CVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQW 74
+ +A+ QAK + +P+G C+I D V+ G N + +A H EM A++
Sbjct: 9 LQVALDQAKKSYSEGGIPIGSCIISSDDTVLGQGHNERIQKHSAILHGEMSALEN----- 63
Query: 75 QKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYG 118
+ + + C +Y T PC MC A+ + G K V G
Sbjct: 64 -----AGRLPGKTYKDCTIYTTLSPCSMCTGAILLYGFKRVVMG 102
>sp|P57343|Y255_BUCAI Uncharacterized protein BU255 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=BU255 PE=3 SV=1
Length = 161
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 15 FMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQW 74
+M +A++ A A + E+P+G +++ ++I G N + + T HAE+ A+
Sbjct: 9 WMKIALKYAYYAKEKGEIPIGAILVFKERIIGIGWNSSISKNDPTAHAEIIAL------- 61
Query: 75 QKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYG 118
G + + LYVT +PCIMC A+ IK + +G
Sbjct: 62 --RGAGKKIKNYRLLNTTLYVTLQPCIMCCGAIIQSRIKRLVFG 103
>sp|Q8K9R4|Y246_BUCAP Uncharacterized protein BUsg_246 OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=BUsg_246 PE=3 SV=1
Length = 151
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Query: 15 FMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQW 74
+M +A++ A A ++ EVP+G +++ K+I G N ++T HAE+ A L +
Sbjct: 9 WMKIALKYAYYAEENGEVPIGAILVFQEKIIGTGWNSVISQNDSTAHAEIIA----LREA 64
Query: 75 QKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCA 120
+N + + LYVT +PC+MC A+ IK + +G +
Sbjct: 65 GRNIKNY-----RLVNTTLYVTLQPCMMCCGAIINSRIKRLVFGAS 105
>sp|Q12178|FCY1_YEAST Cytosine deaminase OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=FCY1 PE=1 SV=1
Length = 158
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 16 MDLAIQQAKLALDSLEVPVGCVIL--EDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQ 73
MD+A ++A L VP+G ++ +DG V+ G N + +AT H E+ +
Sbjct: 15 MDIAYEEAALGYKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTL------ 68
Query: 74 WQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGI 112
+ G + ++ + LY T PC MC A+ + GI
Sbjct: 69 -ENCGRLEGKV---YKDTTLYTTLSPCDMCTGAIIMYGI 103
>sp|Q6PAT0|ADAT3_MOUSE Probable inactive tRNA-specific adenosine deaminase-like protein 3
OS=Mus musculus GN=Adat3 PE=2 SV=1
Length = 349
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 93 LYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLH 134
LYVT EPC+MCA AL I+ V+YG + G G++ +H
Sbjct: 282 LYVTREPCVMCAMALVHARIQRVFYGAPSPD-GALGTLFRVH 322
>sp|Q561R2|ADAT3_RAT Probable inactive tRNA-specific adenosine deaminase-like protein 3
OS=Rattus norvegicus GN=Adat3 PE=2 SV=1
Length = 349
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 93 LYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLH 134
LYVT EPC+MCA AL I+ V+YG A G G+ +H
Sbjct: 282 LYVTREPCVMCAMALVHARIQRVFYG-APSPDGALGTRFRVH 322
>sp|O43012|DCTD_SCHPO Deoxycytidylate deaminase OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=SPBC2G2.13c PE=3 SV=2
Length = 322
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 15 FMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAE----------- 63
FM++A AK + + ++ VGCV++ +VIA G N T R AT E
Sbjct: 178 FMEMASLAAKRS-NCMKRRVGCVLVRGNRVIATGYNGTP--RGATNCNEGGCPRCNSASS 234
Query: 64 --MEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYY 117
E L ++N L ++ + LY PC+ C+ ++ LGIKEV Y
Sbjct: 235 CGKELDTCLCLHAEENALLEAGRERVGNNAILYCDTCPCLTCSVKITQLGIKEVVY 290
>sp|Q8JFW4|ADAT3_DANRE Probable inactive tRNA-specific adenosine deaminase-like protein 3
OS=Danio rerio GN=adat3 PE=2 SV=2
Length = 336
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 93 LYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLH 134
LYVT EPC+MCA AL I V+YG A+ G GS +H
Sbjct: 270 LYVTREPCVMCAMALVHSRISRVFYG-ASTADGAFGSRYKIH 310
>sp|Q96EY9|ADAT3_HUMAN Probable inactive tRNA-specific adenosine deaminase-like protein 3
OS=Homo sapiens GN=ADAT3 PE=1 SV=1
Length = 351
Score = 37.7 bits (86), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 93 LYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLH 134
LYVT EPC MCA AL I V+YG + G G+ +H
Sbjct: 284 LYVTREPCAMCAMALVHARILRVFYGAPSPD-GALGTRFRIH 324
>sp|Q8K9A4|RIBD1_BUCAP Diaminohydroxyphosphoribosylamino-pyrimidine deaminase OS=Buchnera
aphidicola subsp. Schizaphis graminum (strain Sg)
GN=ribD1 PE=3 SV=1
Length = 147
Score = 37.7 bits (86), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 67/169 (39%), Gaps = 43/169 (25%)
Query: 15 FMDLAIQQAKLA--LDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLD 72
+M AI+ +KL S VGCVI+++ K++ G ++ + HAE+ A+++
Sbjct: 6 YMTRAIKLSKLGEFTTSPNPNVGCVIVQNKKIVGEGWHK----KYGENHAEINALNMA-- 59
Query: 73 QWQKNGLSQSEIAEKFSKCCLYVTCEPCIM------CAAALSILGIKEVYYGC--ANEKF 124
EK Y+T EPC C A+ GIK V N K
Sbjct: 60 ------------GEKAKGSTAYITLEPCNHFGKTPPCCDAIIQSGIKNVIISSLDPNPKV 107
Query: 125 GGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQ 173
G G + L +KG G+M+ E+ + F+++
Sbjct: 108 SGKGVLY---------------LRKKGISVKIGLMSKESQKYNKGFFKR 141
>sp|P25539|RIBD_ECOLI Riboflavin biosynthesis protein RibD OS=Escherichia coli (strain
K12) GN=ribD PE=1 SV=1
Length = 367
Score = 37.0 bits (84), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 60/153 (39%), Gaps = 39/153 (25%)
Query: 34 VGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCL 93
VGCVI++DG+++ G ++ R HAE+ A+ + EK
Sbjct: 27 VGCVIVKDGEIVGEGYHQ----RAGEPHAEVHALRM--------------AGEKAKGATA 68
Query: 94 YVTCEPCIM------CAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDV- 146
YVT EPC C AL G+ V + S+ + ++ G
Sbjct: 69 YVTLEPCSHHGRTPPCCDALIAAGVARV--------------VASMQDPNPQVAGRGLYR 114
Query: 147 LGRKGFKCTGGVMASEAVSLFRSFYEQGNPNAP 179
L + G + G+M SEA L + F ++ P
Sbjct: 115 LQQAGIDVSHGLMMSEAEQLNKGFLKRMRTGFP 147
>sp|P32393|COMEB_BACSU ComE operon protein 2 OS=Bacillus subtilis (strain 168) GN=comEB
PE=3 SV=1
Length = 189
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 50/115 (43%), Gaps = 28/115 (24%)
Query: 21 QQAKLALDSL--EVPVGCVILEDGKVIAAGRNRTT---------------ETRNATRHAE 63
Q LAL S + VG I+ D ++IA G N + + T HAE
Sbjct: 13 QSHLLALRSTCPRLSVGATIVRDKRMIAGGYNGSIAGGVHCADEGCLMIDDHCARTIHAE 72
Query: 64 MEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYG 118
M AI Q K G+ ++ AE +YVT PCI C ++ GIK VYY
Sbjct: 73 MNAIL----QCSKFGVP-TDGAE------IYVTHYPCIQCCKSIIQAGIKTVYYA 116
>sp|P32321|DCTD_HUMAN Deoxycytidylate deaminase OS=Homo sapiens GN=DCTD PE=1 SV=2
Length = 178
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 32/122 (26%)
Query: 15 FMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRN--------------RTTETRNATR 60
FM +A A+ + D C++ + K++ G N RT E + T+
Sbjct: 19 FMAVAFLSAQRSKDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTK 78
Query: 61 -----HAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEV 115
HAE+ AI KN + C +YV PC CA + GIKEV
Sbjct: 79 YPYVCHAELNAI------MNKN-------STDVKGCSMYVALFPCNECAKLIIQAGIKEV 125
Query: 116 YY 117
+
Sbjct: 126 IF 127
>sp|Q5M9G0|DCTD_RAT Deoxycytidylate deaminase OS=Rattus norvegicus GN=Dctd PE=2 SV=1
Length = 178
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 32/122 (26%)
Query: 15 FMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRN--------------RTTETRNATR 60
FM +A A+ + D C++ + K++ G N RT E + T+
Sbjct: 19 FMAVAFLSAQRSKDPSSQVGACIVNTENKIVGIGYNGMPNGCSDDLLPWRRTAENKLDTK 78
Query: 61 -----HAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEV 115
HAE+ AI KN + C +YV PC CA + GIKEV
Sbjct: 79 YPYVCHAELNAI------MNKN-------SADVKGCSMYVALFPCNECAKLIIQAGIKEV 125
Query: 116 YY 117
+
Sbjct: 126 IF 127
>sp|Q8K2D6|DCTD_MOUSE Deoxycytidylate deaminase OS=Mus musculus GN=Dctd PE=2 SV=1
Length = 178
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 32/122 (26%)
Query: 15 FMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRN--------------RTTETRNATR 60
FM +A A+ + D C++ + K++ G N RT E + T+
Sbjct: 19 FMAVAFLSAQRSKDPSSQVGACIVNTENKIVGIGYNGMPNGCSDDLLPWRRTAENKLDTK 78
Query: 61 -----HAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEV 115
HAE+ AI KN + C +YV PC CA + GIKEV
Sbjct: 79 YPYVCHAELNAI------MNKN-------SADVKGCSMYVALFPCNECAKLIIQAGIKEV 125
Query: 116 YY 117
+
Sbjct: 126 IF 127
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,131,784
Number of Sequences: 539616
Number of extensions: 2716107
Number of successful extensions: 6338
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 6231
Number of HSP's gapped (non-prelim): 60
length of query: 191
length of database: 191,569,459
effective HSP length: 111
effective length of query: 80
effective length of database: 131,672,083
effective search space: 10533766640
effective search space used: 10533766640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)