Query 029549
Match_columns 191
No_of_seqs 155 out of 1605
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 14:42:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029549.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029549hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10860 tRNA-specific adenosi 100.0 1.4E-42 3E-47 274.0 17.4 149 11-177 12-160 (172)
2 COG0590 CumB Cytosine/adenosin 100.0 1.5E-41 3.3E-46 263.4 16.9 148 7-172 3-151 (152)
3 COG0117 RibD Pyrimidine deamin 100.0 8.8E-35 1.9E-39 219.9 13.7 134 8-174 2-145 (146)
4 PRK10786 ribD bifunctional dia 100.0 1.7E-33 3.7E-38 245.9 16.2 137 12-179 3-147 (367)
5 PLN02807 diaminohydroxyphospho 100.0 3.2E-33 6.8E-38 244.6 15.6 139 10-179 30-176 (380)
6 cd01285 nucleoside_deaminase N 100.0 8.8E-33 1.9E-37 203.2 13.1 104 16-128 1-105 (109)
7 TIGR00326 eubact_ribD riboflav 100.0 1.4E-32 3E-37 238.5 14.7 133 16-179 1-141 (344)
8 PHA02588 cd deoxycytidylate de 100.0 2.1E-32 4.7E-37 215.3 14.1 129 11-167 2-162 (168)
9 KOG1018 Cytosine deaminase FCY 100.0 6.6E-32 1.4E-36 211.9 13.9 160 3-180 2-168 (169)
10 TIGR02571 ComEB ComE operon pr 100.0 2E-31 4.3E-36 206.4 12.7 119 10-156 4-137 (151)
11 cd01286 deoxycytidylate_deamin 100.0 6.3E-30 1.4E-34 193.9 12.7 100 12-123 1-121 (131)
12 cd01284 Riboflavin_deaminase-r 100.0 3.1E-29 6.7E-34 186.0 11.2 94 16-126 1-103 (115)
13 PF00383 dCMP_cyt_deam_1: Cyti 100.0 4.8E-29 1E-33 180.4 11.7 100 10-119 2-102 (102)
14 cd00786 cytidine_deaminase-lik 100.0 4.4E-28 9.6E-33 174.4 10.4 92 16-119 1-95 (96)
15 COG2131 ComEB Deoxycytidylate 99.9 5.2E-23 1.1E-27 159.5 11.8 121 10-155 7-149 (164)
16 KOG2771 Subunit of tRNA-specif 99.8 3.3E-20 7.2E-25 157.2 9.9 143 10-164 165-338 (344)
17 cd01283 cytidine_deaminase Cyt 99.8 2.1E-18 4.5E-23 127.1 10.2 95 17-123 2-103 (112)
18 KOG3127 Deoxycytidylate deamin 99.8 4.1E-18 8.9E-23 136.8 9.9 104 4-121 59-183 (230)
19 TIGR01354 cyt_deam_tetra cytid 99.3 1.9E-11 4.1E-16 92.2 10.4 87 14-111 2-94 (127)
20 PF14439 Bd3614-deam: Bd3614-l 99.2 1.2E-10 2.7E-15 85.2 8.8 90 31-122 7-116 (136)
21 PRK06848 hypothetical protein; 99.1 1.2E-09 2.6E-14 83.6 12.0 95 8-113 3-110 (139)
22 PRK14719 bifunctional RNAse/5- 99.0 7.8E-10 1.7E-14 96.8 7.4 74 88-173 43-116 (360)
23 COG0295 Cdd Cytidine deaminase 98.9 3E-08 6.5E-13 75.1 10.2 95 14-119 7-108 (134)
24 PRK08298 cytidine deaminase; V 98.8 4E-08 8.7E-13 74.9 10.6 94 11-117 3-106 (136)
25 PRK12411 cytidine deaminase; P 98.8 7.4E-08 1.6E-12 73.1 11.1 88 13-111 4-97 (132)
26 PRK05578 cytidine deaminase; V 98.8 7.7E-08 1.7E-12 72.9 10.7 88 13-111 4-97 (131)
27 TIGR01355 cyt_deam_dimer cytid 98.7 1.7E-07 3.7E-12 79.3 9.7 88 11-111 21-112 (283)
28 PLN02402 cytidine deaminase 98.5 7.7E-07 1.7E-11 75.8 8.8 87 12-111 25-115 (303)
29 KOG0833 Cytidine deaminase [Nu 98.4 3.5E-06 7.6E-11 66.0 11.2 94 12-117 21-122 (173)
30 PRK09027 cytidine deaminase; P 98.4 3.3E-06 7.2E-11 72.0 9.8 97 11-116 188-290 (295)
31 PLN02182 cytidine deaminase 98.2 8.9E-06 1.9E-10 70.2 10.1 81 21-112 54-144 (339)
32 PRK09027 cytidine deaminase; P 98.2 2.3E-05 4.9E-10 66.9 11.1 69 30-111 69-140 (295)
33 TIGR01355 cyt_deam_dimer cytid 98.0 0.00011 2.4E-09 62.4 10.8 94 13-113 175-274 (283)
34 PLN02402 cytidine deaminase 97.5 0.00027 5.8E-09 60.5 6.8 60 12-72 192-253 (303)
35 PF14437 MafB19-deam: MafB19-l 96.6 0.023 5.1E-07 43.7 9.2 69 41-120 37-135 (146)
36 PF08211 dCMP_cyt_deam_2: Cyti 96.0 0.017 3.6E-07 43.4 5.1 60 13-73 34-95 (124)
37 PF14431 YwqJ-deaminase: YwqJ- 95.6 0.067 1.5E-06 40.1 7.2 48 58-112 65-125 (125)
38 PF14424 Toxin-deaminase: The 91.1 0.44 9.6E-06 36.1 4.6 45 59-111 73-119 (133)
39 PF14440 XOO_2897-deam: Xantho 89.3 0.61 1.3E-05 34.7 3.9 55 57-122 43-102 (118)
40 PF08210 APOBEC_N: APOBEC-like 88.3 0.67 1.5E-05 37.1 3.9 126 31-174 23-161 (188)
41 PF14441 OTT_1508_deam: OTT_15 68.5 13 0.00028 28.1 5.0 44 56-111 64-107 (142)
42 PF13540 RCC1_2: Regulator of 60.6 16 0.00035 19.9 3.1 19 33-51 9-27 (30)
43 PRK13663 hypothetical protein; 54.7 32 0.00069 31.2 5.5 58 7-75 335-392 (493)
44 PF05507 MAGP: Microfibril-ass 52.7 15 0.00033 27.7 2.7 30 89-118 89-118 (137)
45 PRK09732 hypothetical protein; 52.3 1E+02 0.0022 23.3 7.5 53 11-72 11-64 (134)
46 PF08903 DUF1846: Domain of un 50.7 41 0.00088 30.6 5.6 56 9-75 336-391 (491)
47 PRK09710 lar restriction allev 50.1 3.4 7.3E-05 27.4 -0.9 18 94-111 3-20 (64)
48 PF02132 RecR: RecR protein; 48.5 32 0.00068 20.3 3.2 20 86-105 18-37 (41)
49 PF08098 ATX_III: Anemonia sul 39.5 10 0.00023 20.3 0.1 9 96-104 2-10 (27)
50 PRK00611 putative disulfide ox 37.9 15 0.00032 27.9 0.8 11 95-105 31-41 (135)
51 COG3193 GlcG Uncharacterized p 35.3 2E+02 0.0044 22.0 7.2 52 12-72 13-65 (141)
52 TIGR00159 conserved hypothetic 35.2 38 0.00082 27.7 2.8 30 34-63 126-160 (211)
53 PLN02182 cytidine deaminase 35.0 1.3E+02 0.0028 26.5 6.2 60 12-72 201-262 (339)
54 PRK04307 putative disulfide ox 34.8 17 0.00037 29.9 0.7 12 94-105 47-58 (218)
55 PF14421 LmjF365940-deam: A di 34.5 71 0.0015 25.6 4.1 42 31-72 36-87 (193)
56 PF14427 Pput2613-deam: Pput_2 30.7 62 0.0013 23.9 2.9 48 60-120 49-101 (118)
57 PRK03113 putative disulfide ox 29.1 27 0.00058 26.6 0.9 10 96-105 33-42 (139)
58 KOG2584 Dihydroorotase and rel 29.0 80 0.0017 29.0 3.9 70 40-121 199-278 (522)
59 PF05528 Coronavirus_5: Corona 28.8 20 0.00042 24.3 0.1 19 89-107 25-47 (82)
60 cd06222 RnaseH RNase H (RNase 28.7 1.6E+02 0.0035 19.7 5.0 43 31-75 14-57 (130)
61 COG4827 Predicted transporter 27.4 62 0.0013 26.6 2.7 24 87-110 101-124 (239)
62 PF06230 DUF1009: Protein of u 26.6 2E+02 0.0043 23.6 5.6 42 7-51 90-132 (214)
63 PF02457 DisA_N: DisA bacteria 26.6 36 0.00078 25.3 1.2 17 34-50 56-72 (122)
64 PF04805 Pox_E10: E10-like pro 26.5 49 0.0011 22.1 1.7 17 95-111 13-29 (70)
65 PF08186 Wound_ind: Wound-indu 26.1 1E+02 0.0022 18.9 2.8 10 164-173 7-16 (46)
66 PRK00881 purH bifunctional pho 25.5 5.6E+02 0.012 23.9 10.7 89 8-117 393-482 (513)
67 PF14428 SCP1201-deam: SCP1.20 25.3 68 0.0015 24.3 2.5 39 58-109 67-109 (135)
68 COG1624 Uncharacterized conser 23.8 73 0.0016 26.7 2.7 17 34-50 173-189 (247)
69 PRK13907 rnhA ribonuclease H; 23.4 2.8E+02 0.0061 19.8 6.9 42 31-76 16-58 (128)
70 KOG1939 Oxoprolinase [Amino ac 21.9 2.8E+02 0.0062 27.7 6.3 74 12-100 734-815 (1247)
71 PF03928 DUF336: Domain of unk 21.8 3.3E+02 0.0071 19.9 7.5 50 13-71 9-59 (132)
72 KOG1682 Enoyl-CoA isomerase [L 21.5 1.2E+02 0.0025 25.1 3.3 49 16-65 60-111 (287)
73 PRK01749 disulfide bond format 20.4 46 0.00099 26.2 0.7 12 94-105 35-46 (176)
No 1
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=100.00 E-value=1.4e-42 Score=273.99 Aligned_cols=149 Identities=32% Similarity=0.499 Sum_probs=130.2
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhcCCC
Q 029549 11 DTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSK 90 (191)
Q Consensus 11 ~~~~~m~~Ai~~A~~a~~~~~~pvGavIv~~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~ 90 (191)
+|++||++|+++|+++...+++|||||||++|+||++|+|+.....|++.|||++||+++.+++.. +.+.+
T Consensus 12 ~~~~~m~~A~~~A~~a~~~g~~pvGAVIV~~g~IIa~g~N~~~~~~d~~~HAEi~Ai~~a~~~~~~---------~~l~g 82 (172)
T PRK10860 12 SHEYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQN---------YRLLD 82 (172)
T ss_pred cHHHHHHHHHHHHHHhhccCCCCEEEEEEeCCEEEEEeeCCCCCCCCCccCHHHHHHHHHHHhcCC---------CCcCC
Confidence 367899999999999998899999999999999999999998888899999999999999877653 35789
Q ss_pred cEEEecCCChHHHHHHHHHhCCCeEEEeecCCCCcccccccccccccccccccccccCCCCeEEEccCCHHHHHHHHHHH
Q 029549 91 CCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSF 170 (191)
Q Consensus 91 ~~ly~T~EPC~mC~~ai~~sgi~rVvy~~~~~~~g~~g~~~~l~~~~~~~~~~~~~l~~~~i~V~~gvl~~e~~~l~~~f 170 (191)
+|||||+|||+||++||+|+||+||||+.++++.|+.|+.+.+..... + ++.++|++|++++||.+|++.|
T Consensus 83 ~tlY~TlEPC~MC~~aii~agI~rVvyg~~d~~~g~~g~~~~~l~~~~--------~-~~~i~v~~gv~~~e~~~ll~~f 153 (172)
T PRK10860 83 ATLYVTLEPCVMCAGAMVHSRIGRLVFGARDAKTGAAGSLMDVLHHPG--------M-NHRVEITEGVLADECAALLSDF 153 (172)
T ss_pred cEEEeeCCCcHHHHHHHHHhCCCEEEEeecCCCCCCCCcHHHHhhccc--------C-CCCCEEEeCccHHHHHHHHHHH
Confidence 999999999999999999999999999999999988776544332111 1 3568999999999999999999
Q ss_pred HHhcCCC
Q 029549 171 YEQGNPN 177 (191)
Q Consensus 171 ~~~~~~~ 177 (191)
|++.+++
T Consensus 154 f~~~~~~ 160 (172)
T PRK10860 154 FRMRRQE 160 (172)
T ss_pred HHHHhhc
Confidence 9987654
No 2
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-41 Score=263.42 Aligned_cols=148 Identities=37% Similarity=0.600 Sum_probs=135.2
Q ss_pred CCCHhHHHHHHHHHHHHHHhhcCCCCcEEEEEee-CCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhh
Q 029549 7 EWSPDTLAFMDLAIQQAKLALDSLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIA 85 (191)
Q Consensus 7 ~~~~~~~~~m~~Ai~~A~~a~~~~~~pvGavIv~-~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~ 85 (191)
+...+|+.||++|+++|+++.+.|+.|||||||+ +|+||+.|+|+..+..||+.|||+.||+++.+.+++
T Consensus 3 ~~~~~~~~~m~~al~~A~~a~~~ge~PvGaviV~~~~~ii~~~~N~~~~~~dptaHAEi~air~a~~~~~~--------- 73 (152)
T COG0590 3 FLSEKDEDFMREALKEAKKAGDEGEVPVGAVIVDADGEIIARGHNRREEDNDPTAHAEILAIRAAAETLGN--------- 73 (152)
T ss_pred chhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCEEEEecCccccCCCccccHHHHHHHHHHHhhCC---------
Confidence 4567889999999999999998889999999999 999999999999999999999999999999998865
Q ss_pred hcCCCcEEEecCCChHHHHHHHHHhCCCeEEEeecCCCCcccccccccccccccccccccccCCCCeEEEccCCHHHHHH
Q 029549 86 EKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVS 165 (191)
Q Consensus 86 ~~~~~~~ly~T~EPC~mC~~ai~~sgi~rVvy~~~~~~~g~~g~~~~l~~~~~~~~~~~~~l~~~~i~V~~gvl~~e~~~ 165 (191)
+.+.+||||||+|||+||++||+|+||+|||||.++++.|+.|+.+++...+.. ++.++|..|++++||.+
T Consensus 74 ~~l~~~tlyvT~EPC~MCagAi~~ari~rvvyga~~~~~ga~g~~~~i~~~~~~---------~~~~~v~~g~~~~e~~~ 144 (152)
T COG0590 74 YRLKDCTLYVTLEPCPMCAGAIIWARIDRVVYGASDPKTGAIGSLLDILKDPRL---------NHRVEVYGGILEEECSA 144 (152)
T ss_pred CCcCCcEEEEecCCHHHHHHHHHHhCCCeEEEecCCCCcCccCcccccccCCCC---------CcCeEEecchhhHHHHH
Confidence 578999999999999999999999999999999999999999987777654222 37789999999999999
Q ss_pred HHHHHHH
Q 029549 166 LFRSFYE 172 (191)
Q Consensus 166 l~~~f~~ 172 (191)
+++.||.
T Consensus 145 ~l~~f~~ 151 (152)
T COG0590 145 LLSEFFR 151 (152)
T ss_pred HHHHHHh
Confidence 9999996
No 3
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=100.00 E-value=8.8e-35 Score=219.89 Aligned_cols=134 Identities=28% Similarity=0.417 Sum_probs=119.4
Q ss_pred CCHhHHHHHHHHHHHHHHhhc--CCCCcEEEEEeeCCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhh
Q 029549 8 WSPDTLAFMDLAIQQAKLALD--SLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIA 85 (191)
Q Consensus 8 ~~~~~~~~m~~Ai~~A~~a~~--~~~~pvGavIv~~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~ 85 (191)
.++.|+.||++||++|++... .+|++||||||++|+||+.|++. ..+..|||+.||+++ +
T Consensus 2 ~~~~~~~~M~~Al~lA~k~~g~T~pNP~VG~VIV~~~~Ivg~G~h~----~aG~pHAEv~Al~~a--------------g 63 (146)
T COG0117 2 SSELDERYMERALELAEKGQGTTSPNPSVGCVIVKDGEIVGEGYHE----KAGGPHAEVCALRMA--------------G 63 (146)
T ss_pred cchHHHHHHHHHHHHHHhcCCcCCCCCceeEEEEECCEEEeeeecC----CCCCCcHHHHHHHHc--------------C
Confidence 356799999999999999764 46999999999999999999998 578999999999998 3
Q ss_pred hcCCCcEEEecCCCh------HHHHHHHHHhCCCeEEEeecCCC--CcccccccccccccccccccccccCCCCeEEEcc
Q 029549 86 EKFSKCCLYVTCEPC------IMCAAALSILGIKEVYYGCANEK--FGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGG 157 (191)
Q Consensus 86 ~~~~~~~ly~T~EPC------~mC~~ai~~sgi~rVvy~~~~~~--~g~~g~~~~l~~~~~~~~~~~~~l~~~~i~V~~g 157 (191)
....|+|+|+|+||| |+|+.+|+.+||+|||++..||+ ..+. +...|+++||+|..|
T Consensus 64 ~~a~Gat~yVTLEPCsH~GrTPPC~~ali~agi~rVvva~~DPnp~Vag~---------------G~~~L~~aGi~V~~g 128 (146)
T COG0117 64 EAARGATAYVTLEPCSHYGRTPPCADALIKAGVARVVVAMLDPNPLVAGG---------------GLARLRAAGIEVEVG 128 (146)
T ss_pred cccCCCEEEEEecCcccCCCCcchHHHHHHhCCCEEEEEecCCCccccCc---------------hHHHHHHcCCeEEEe
Confidence 457899999999999 69999999999999999998887 3333 357889999999999
Q ss_pred CCHHHHHHHHHHHHHhc
Q 029549 158 VMASEAVSLFRSFYEQG 174 (191)
Q Consensus 158 vl~~e~~~l~~~f~~~~ 174 (191)
+|++|+..+++.|+.+.
T Consensus 129 il~~e~~~l~~~f~~~~ 145 (146)
T COG0117 129 ILEEEAEKLNEGFLKRM 145 (146)
T ss_pred hhHHHHHHHHHHHHccc
Confidence 99999999999999764
No 4
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=100.00 E-value=1.7e-33 Score=245.89 Aligned_cols=137 Identities=27% Similarity=0.401 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHHhhc--CCCCcEEEEEeeCCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhcCC
Q 029549 12 TLAFMDLAIQQAKLALD--SLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFS 89 (191)
Q Consensus 12 ~~~~m~~Ai~~A~~a~~--~~~~pvGavIv~~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~ 89 (191)
|++||++|+++|+++.. .+++|||||||+||+||+.|+|.. .+..|||++||+++.++ +.
T Consensus 3 d~~~m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~----~g~~HAE~~ai~~a~~~--------------~~ 64 (367)
T PRK10786 3 DEFYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQR----AGEPHAEVHALRMAGEK--------------AK 64 (367)
T ss_pred HHHHHHHHHHHHHhcCcCCCCCCCEEEEEEeCCEEEEEEeCCC----CCCCCHHHHHHHHHhhh--------------cC
Confidence 67899999999999863 469999999999999999999974 45699999999999642 57
Q ss_pred CcEEEecCCCh------HHHHHHHHHhCCCeEEEeecCCCCcccccccccccccccccccccccCCCCeEEEccCCHHHH
Q 029549 90 KCCLYVTCEPC------IMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEA 163 (191)
Q Consensus 90 ~~~ly~T~EPC------~mC~~ai~~sgi~rVvy~~~~~~~g~~g~~~~l~~~~~~~~~~~~~l~~~~i~V~~gvl~~e~ 163 (191)
|+|||||+||| +||+.+|+++||+||||+..+|+.+..|+ +...++++||+|..|++++||
T Consensus 65 g~tlyvTlEPC~~~g~t~mC~~aii~agI~rVv~~~~dp~~~~~g~-------------~~~~l~~~gi~v~~~~~~~e~ 131 (367)
T PRK10786 65 GATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGR-------------GLYRLQQAGIDVSHGLMMSEA 131 (367)
T ss_pred CCEEEEecCCccCCCCChHHHHHHHHhCCCEEEEecCCCCcccCch-------------HHHHHhcCCcEEEcCCcHHHH
Confidence 99999999999 89999999999999999999988665442 234567899999999999999
Q ss_pred HHHHHHHHHhcCCCCC
Q 029549 164 VSLFRSFYEQGNPNAP 179 (191)
Q Consensus 164 ~~l~~~f~~~~~~~~p 179 (191)
.++++.||.+.+.+.|
T Consensus 132 ~~l~~~f~~~~~~~rP 147 (367)
T PRK10786 132 EALNKGFLKRMRTGFP 147 (367)
T ss_pred HHHHHHHHHHhhcccc
Confidence 9999999998775555
No 5
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase
Probab=100.00 E-value=3.2e-33 Score=244.64 Aligned_cols=139 Identities=26% Similarity=0.348 Sum_probs=119.7
Q ss_pred HhHHHHHHHHHHHHHHhhcC--CCCcEEEEEeeCCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhc
Q 029549 10 PDTLAFMDLAIQQAKLALDS--LEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEK 87 (191)
Q Consensus 10 ~~~~~~m~~Ai~~A~~a~~~--~~~pvGavIv~~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~ 87 (191)
.+|++||++|+++|+++... ++++||||||++|+||+.|+|.. .+..|||++||+++.+ .
T Consensus 30 ~~d~~~M~~Al~lA~~~~~~~~~np~VGaViV~~g~Ii~~g~n~~----~g~~HAEi~Ai~~a~~--------------~ 91 (380)
T PLN02807 30 DDDSFYMRRCVELARKAIGCTSPNPMVGCVIVKDGRIVGEGFHPK----AGQPHAEVFALRDAGD--------------L 91 (380)
T ss_pred chHHHHHHHHHHHHHhhcccCCCCCCEEEEEEECCEEEEEEeCCC----CCCcCHHHHHHHHhhh--------------h
Confidence 46789999999999998754 47889999999999999999974 4678999999999854 2
Q ss_pred CCCcEEEecCCCh------HHHHHHHHHhCCCeEEEeecCCCCcccccccccccccccccccccccCCCCeEEEccCCHH
Q 029549 88 FSKCCLYVTCEPC------IMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMAS 161 (191)
Q Consensus 88 ~~~~~ly~T~EPC------~mC~~ai~~sgi~rVvy~~~~~~~g~~g~~~~l~~~~~~~~~~~~~l~~~~i~V~~gvl~~ 161 (191)
+.|+|||||+||| +||+++|+++||+||||+..+|+.+..|. +...++++||+|..|++++
T Consensus 92 ~~g~tlyvTLEPC~h~Gktp~C~~aii~agI~rVv~g~~dp~~~~~g~-------------g~~~l~~~gi~V~~g~~~~ 158 (380)
T PLN02807 92 AENATAYVSLEPCNHYGRTPPCTEALIKAKVKRVVVGMVDPNPIVASK-------------GIERLRDAGIEVTVGVEEE 158 (380)
T ss_pred cCCcEEEEEcCCCcCCCCChHHHHHHHHhCCCEEEEEecCCCccccch-------------HHHHHHhCCCEEEeCcCHH
Confidence 5799999999999 89999999999999999999887654331 2456778999999999999
Q ss_pred HHHHHHHHHHHhcCCCCC
Q 029549 162 EAVSLFRSFYEQGNPNAP 179 (191)
Q Consensus 162 e~~~l~~~f~~~~~~~~p 179 (191)
||.+|++.||.+...+.|
T Consensus 159 e~~~l~~~f~~~~~~~rP 176 (380)
T PLN02807 159 LCRKLNEAFIHRMLTGKP 176 (380)
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 999999999997665555
No 6
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=100.00 E-value=8.8e-33 Score=203.24 Aligned_cols=104 Identities=48% Similarity=0.718 Sum_probs=96.2
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEEee-CCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhcCCCcEEE
Q 029549 16 MDLAIQQAKLALDSLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLY 94 (191)
Q Consensus 16 m~~Ai~~A~~a~~~~~~pvGavIv~-~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly 94 (191)
|++|+++|+++...+++|||||||+ +|+||+.|+|...+..+++.|||++||+++.+++.. +.+.+++||
T Consensus 1 m~~al~~a~~~~~~~~~~vgaviv~~~~~ii~~g~n~~~~~~~~~~HAE~~ai~~~~~~~~~---------~~~~~~~ly 71 (109)
T cd01285 1 MRLAIELARKALAEGEVPFGAVIVDDDGKVIARGHNRVEQDGDPTAHAEIVAIRNAARRLGS---------YLLSGCTLY 71 (109)
T ss_pred CHHHHHHHHHHHHcCCCcEEEEEEeCCCEEEEEEeCCCCCCCCCcccHHHHHHHHHHHHhCC---------CccCCeEEE
Confidence 6889999999999999999999998 599999999999888899999999999999887653 458999999
Q ss_pred ecCCChHHHHHHHHHhCCCeEEEeecCCCCcccc
Q 029549 95 VTCEPCIMCAAALSILGIKEVYYGCANEKFGGCG 128 (191)
Q Consensus 95 ~T~EPC~mC~~ai~~sgi~rVvy~~~~~~~g~~g 128 (191)
+|+|||+||++||+|+||++|||+.++++.|+.+
T Consensus 72 ~t~EPC~mC~~ai~~~gi~~Vvy~~~~~~~g~~~ 105 (109)
T cd01285 72 TTLEPCPMCAGALLWARIKRVVYGASDPKLGGIG 105 (109)
T ss_pred EeCCChHHHHHHHHHHCCCEEEEEecCCcccccc
Confidence 9999999999999999999999999999887765
No 7
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model.
Probab=100.00 E-value=1.4e-32 Score=238.47 Aligned_cols=133 Identities=29% Similarity=0.450 Sum_probs=115.8
Q ss_pred HHHHHHHHHHhhcC--CCCcEEEEEeeCCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhcCCCcEE
Q 029549 16 MDLAIQQAKLALDS--LEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCL 93 (191)
Q Consensus 16 m~~Ai~~A~~a~~~--~~~pvGavIv~~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (191)
|++|+++|+++... +++|||||||+||+||+.|+|. ..++.|||++||+++.++ ++|+||
T Consensus 1 m~~a~~~a~~~~~~~~~~~~vGaviv~~~~ii~~g~n~----~~~~~HAE~~ai~~a~~~--------------~~g~tl 62 (344)
T TIGR00326 1 MNRALDLAKKGQGTTHPNPLVGCVIVKNGEIVGEGAHQ----KAGEPHAEVHALRQAGEN--------------AKGATA 62 (344)
T ss_pred CHHHHHHHHhcCCCCCCCCCEEEEEEeCCEEEEEeeCC----CCCCCCHHHHHHHHhccc--------------cCCcEE
Confidence 78999999999754 6889999999999999999998 458999999999998542 579999
Q ss_pred EecCCCh------HHHHHHHHHhCCCeEEEeecCCCCcccccccccccccccccccccccCCCCeEEEccCCHHHHHHHH
Q 029549 94 YVTCEPC------IMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLF 167 (191)
Q Consensus 94 y~T~EPC------~mC~~ai~~sgi~rVvy~~~~~~~g~~g~~~~l~~~~~~~~~~~~~l~~~~i~V~~gvl~~e~~~l~ 167 (191)
|||+||| +||+++|+++||+||||+..+++.+..++ +...+++.||+|..|++++||.+|+
T Consensus 63 yvtlEPC~~~g~~~~C~~ai~~~gi~~vv~~~~d~~~~~~~~-------------~~~~l~~~gi~v~~~~~~~e~~~l~ 129 (344)
T TIGR00326 63 YVTLEPCSHQGRTPPCAEAIIEAGIKKVVVSMQDPNPLVAGR-------------GAERLKQAGIEVTFGILKEEAERLN 129 (344)
T ss_pred EEeCCCCCCCCCCcHHHHHHHHcCCCEEEEEeCCCCccccch-------------HHHHHhcCCcEEEeCCCHHHHHHHH
Confidence 9999999 79999999999999999999887655431 2345777899999999999999999
Q ss_pred HHHHHhcCCCCC
Q 029549 168 RSFYEQGNPNAP 179 (191)
Q Consensus 168 ~~f~~~~~~~~p 179 (191)
+.||.+.+.+.|
T Consensus 130 ~~f~~~~~~~rP 141 (344)
T TIGR00326 130 KGFLKRMRTGLP 141 (344)
T ss_pred HHHHHhhhcCCC
Confidence 999998775554
No 8
>PHA02588 cd deoxycytidylate deaminase; Provisional
Probab=100.00 E-value=2.1e-32 Score=215.27 Aligned_cols=129 Identities=26% Similarity=0.390 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEEeCCCccc--------------------------------CCc
Q 029549 11 DTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTET--------------------------------RNA 58 (191)
Q Consensus 11 ~~~~~m~~Ai~~A~~a~~~~~~pvGavIv~~g~Ii~~g~n~~~~~--------------------------------~~~ 58 (191)
.|++||++|+.+|++|. .++.|||||||++|+||++|+|..+.. .++
T Consensus 2 ~d~~fM~~A~~~A~~s~-~~~~~VGAVIV~~~~Iis~GyNg~p~g~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PHA02588 2 KDSTYLQIAYLVSQESK-CVSWKVGAVIEKNGRIISTGYNGTPAGGVNCCDHANEQGWLDDEGKLKKEHRPEHSAWSSKN 80 (168)
T ss_pred CHHHHHHHHHHHHHhcC-CCCCCEEEEEEECCEEEEEEeCCCCcCCcccccccccccccccccccccccccccccccCCC
Confidence 36789999999999996 568999999999999999999987643 256
Q ss_pred ccchHHHHHHHHHHHhhhCCCChhhhhhcCCCcEEEecCCChHHHHHHHHHhCCCeEEEeecCCCCcccccccccccccc
Q 029549 59 TRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDS 138 (191)
Q Consensus 59 ~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~T~EPC~mC~~ai~~sgi~rVvy~~~~~~~g~~g~~~~l~~~~~ 138 (191)
+.|||++||.++.++. ..+.|+|||||+|||+||+++|+++||+||||+...+....
T Consensus 81 ~~HAE~nAi~~a~~~~-----------~~~~g~tLYvTlePC~~Ca~aI~~~gI~rVvy~~~~~~~~~------------ 137 (168)
T PHA02588 81 EIHAELNAILFAARNG-----------ISIEGATMYVTASPCPDCAKAIAQSGIKKLVYCEKYDRNGP------------ 137 (168)
T ss_pred CccHHHHHHHHHhhcC-----------CCCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEeeccCCCcH------------
Confidence 8899999999987541 24789999999999999999999999999999986443211
Q ss_pred cccccccccCCCCeEEEccCCHHHHHHHH
Q 029549 139 KMLNSGDVLGRKGFKCTGGVMASEAVSLF 167 (191)
Q Consensus 139 ~~~~~~~~l~~~~i~V~~gvl~~e~~~l~ 167 (191)
.+...|++.||+|.. +..+++..+|
T Consensus 138 ---~~~~~L~~~Gi~v~~-~~~~~~~~~~ 162 (168)
T PHA02588 138 ---GWDDILRKSGIEVIQ-IPKEELNKLN 162 (168)
T ss_pred ---HHHHHHHHCCCEEEE-eCHHHHHhhh
Confidence 124678899999985 6666655544
No 9
>KOG1018 consensus Cytosine deaminase FCY1 and related enzymes [Nucleotide transport and metabolism]
Probab=99.98 E-value=6.6e-32 Score=211.89 Aligned_cols=160 Identities=44% Similarity=0.682 Sum_probs=135.9
Q ss_pred CCCCCCCHhHHHHHHHHHHHHHHhhcCC-CCcEEEEEee-CCeEEEEEeCCCcccCCcccchHHHHHHH---HHHHhhhC
Q 029549 3 SSGEEWSPDTLAFMDLAIQQAKLALDSL-EVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDV---LLDQWQKN 77 (191)
Q Consensus 3 ~~~~~~~~~~~~~m~~Ai~~A~~a~~~~-~~pvGavIv~-~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~---~~~~~~~~ 77 (191)
....+++..|.+||+.|+++|+++.+.+ +.|||||+|+ ||+|+++|+|.++...+++.|||+.||+. .+.++..
T Consensus 2 ~~~~~~~~~~~~~m~~a~eea~ka~d~~~~~pvg~vlV~~~g~v~a~g~n~~~~~~d~t~HaE~~~I~~~~~~~~~~~~- 80 (169)
T KOG1018|consen 2 SSIRELSDHDIAFMVEAVEEAKKALDEGDEVPVGAVLVHMDGKVLASGGNMVNEKKDPTAHAEVIAIREEEVMCKSLRT- 80 (169)
T ss_pred ccchhcccccHHHHHHHHHHHHhhccCCCCCceEEEEEeCCCeEEecccceecccCCcchhhHHHHHhhHHHHhhhcCc-
Confidence 3567888999999999999999999999 9999999999 99999999999999999999999999999 4444332
Q ss_pred CCChhhhhhcCCCcEEEecCCChHHHHHHHHHhCCCeEEEeecCCCCcccccccccccccccccccccccCC--CCeEEE
Q 029549 78 GLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGR--KGFKCT 155 (191)
Q Consensus 78 ~~~~~~~~~~~~~~~ly~T~EPC~mC~~ai~~sgi~rVvy~~~~~~~g~~g~~~~l~~~~~~~~~~~~~l~~--~~i~V~ 155 (191)
..++++|||||.|||+||++||.|+||++||||..++..|+.++..+... ..++. ..+.+.
T Consensus 81 --------~~ls~~tlyvt~ePc~mC~gal~~~gv~~vv~G~~ne~~~~~~~~~~~~~---------~~l~~~~~~~~~~ 143 (169)
T KOG1018|consen 81 --------IDLSETTLYVTCEPCPMCAGALAQSGVKRVVFGASNERFGGIGFVLRGNK---------DFLKRLGASVISR 143 (169)
T ss_pred --------eeccCCEEEEEecccHHHHHHHHHcCCCEEEEecccccccccceeeeehh---------hhhccCCcceEec
Confidence 46899999999999999999999999999999999999988875544322 11222 334566
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCCC
Q 029549 156 GGVMASEAVSLFRSFYEQGNPNAPK 180 (191)
Q Consensus 156 ~gvl~~e~~~l~~~f~~~~~~~~p~ 180 (191)
.|+..+++..+++.|+.+.++.+|.
T Consensus 144 ~~i~~~~~~~~~~~f~~~~n~~~~~ 168 (169)
T KOG1018|consen 144 DGIEKKEAQKLLIAFYVRDNPKDPG 168 (169)
T ss_pred cchhhHHhhhHHHhhccccccCCCC
Confidence 7788888889999999999988775
No 10
>TIGR02571 ComEB ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.
Probab=99.97 E-value=2e-31 Score=206.38 Aligned_cols=119 Identities=24% Similarity=0.317 Sum_probs=99.1
Q ss_pred HhHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEEeCCCcccC---------------CcccchHHHHHHHHHHHh
Q 029549 10 PDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETR---------------NATRHAEMEAIDVLLDQW 74 (191)
Q Consensus 10 ~~~~~~m~~Ai~~A~~a~~~~~~pvGavIv~~g~Ii~~g~n~~~~~~---------------~~~~HAE~~Ai~~~~~~~ 74 (191)
++|++||++|+.+|+++. .++.|||||||+||+||+.|+|...... +++.|||++||.++.+..
T Consensus 4 ~~d~~fM~~A~~~A~rs~-~~~~~VGAVIV~d~~IIs~GyN~~~~g~~~~~~~~~~~~~~~~~~~~HAE~nAI~~a~~~~ 82 (151)
T TIGR02571 4 KWDQYFMAQSHLLALRST-CTRLSVGATIVRDKRIIAGGYNGSVAGGVHCIDEGCYVVDGHCVRTIHAEMNALLQCAKFG 82 (151)
T ss_pred cHHHHHHHHHHHHHHhcC-CCCCCEEEEEEECCEEEEEEECCCCCCCCccccccccccccccCCccCHHHHHHHHHHhcC
Confidence 578899999999999985 5689999999999999999999986543 478999999999886421
Q ss_pred hhCCCChhhhhhcCCCcEEEecCCChHHHHHHHHHhCCCeEEEeecCCCCcccccccccccccccccccccccCCCCeEE
Q 029549 75 QKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKC 154 (191)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~ly~T~EPC~mC~~ai~~sgi~rVvy~~~~~~~g~~g~~~~l~~~~~~~~~~~~~l~~~~i~V 154 (191)
..+.+++||||+|||+||+++|+|+||++|||+..++... .+...+++.||+|
T Consensus 83 -----------~~l~g~tlYvT~ePC~~Ca~ai~~agI~~Vvy~~~~~~~~----------------~~~~~l~~~gi~v 135 (151)
T TIGR02571 83 -----------VSTEGAEIYVTHFPCLQCTKSIIQAGIKKIYYAQDYHNHP----------------YAIELFEQAGVEL 135 (151)
T ss_pred -----------CCcCCcEEEEeCCCcHHHHHHHHHhCCCEEEEccCCCCcH----------------HHHHHHHHCCCEE
Confidence 2378999999999999999999999999999986543321 0245788899998
Q ss_pred Ec
Q 029549 155 TG 156 (191)
Q Consensus 155 ~~ 156 (191)
..
T Consensus 136 ~~ 137 (151)
T TIGR02571 136 KK 137 (151)
T ss_pred EE
Confidence 75
No 11
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.
Probab=99.97 E-value=6.3e-30 Score=193.91 Aligned_cols=100 Identities=32% Similarity=0.391 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEEeCCCcc---------------------cCCcccchHHHHHHHH
Q 029549 12 TLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTE---------------------TRNATRHAEMEAIDVL 70 (191)
Q Consensus 12 ~~~~m~~Ai~~A~~a~~~~~~pvGavIv~~g~Ii~~g~n~~~~---------------------~~~~~~HAE~~Ai~~~ 70 (191)
|+.||++|+++|+++.. +++|||||||++|+||+.|+|.+.. ..+++.|||++||.++
T Consensus 1 d~~~m~~A~~~A~~s~~-~~~~VGAViv~~~~iI~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~a 79 (131)
T cd01286 1 DEYFMAIARLAALRSTC-PRRQVGAVIVKDKRIISTGYNGSPSGLPHCAEVGCERDDLPSGEDQKCCRTVHAEQNAILQA 79 (131)
T ss_pred CHHHHHHHHHHHHHcCC-CCCCEEEEEEECCEEEEEeeCCCCCCCCCcccccccccccccccccccCCCCCHHHHHHHHH
Confidence 46799999999999864 6899999999999999999998752 4579999999999998
Q ss_pred HHHhhhCCCChhhhhhcCCCcEEEecCCChHHHHHHHHHhCCCeEEEeecCCC
Q 029549 71 LDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEK 123 (191)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~ly~T~EPC~mC~~ai~~sgi~rVvy~~~~~~ 123 (191)
.++ . ..+.+++||||+|||+||+.+|+|+||++|||+.+.+.
T Consensus 80 ~~~-~----------~~~~~~tLyvT~ePC~~C~~ai~~~gI~~Vvy~~~~~~ 121 (131)
T cd01286 80 ARH-G----------VSLEGATLYVTLFPCIECAKLIIQAGIKKVVYAEPYDD 121 (131)
T ss_pred hHc-C----------CCcCCeEEEEecCcHHHHHHHHHHhCCCEEEEeeccCc
Confidence 764 1 24689999999999999999999999999999987664
No 12
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=99.96 E-value=3.1e-29 Score=186.02 Aligned_cols=94 Identities=35% Similarity=0.532 Sum_probs=85.0
Q ss_pred HHHHHHHHHHh--hcCCCCcEEEEEee-CCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhcCCCcE
Q 029549 16 MDLAIQQAKLA--LDSLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCC 92 (191)
Q Consensus 16 m~~Ai~~A~~a--~~~~~~pvGavIv~-~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (191)
|++|+++|+++ ...+++|||||||+ ||+||+.|+|+. .++.|||++||+++.++ .+.++|
T Consensus 1 m~~al~~A~~~~~~~~~~~pvGaviv~~~g~iv~~g~n~~----~~~~HAE~~ai~~a~~~-------------~l~g~t 63 (115)
T cd01284 1 MRRALELAEKGRGLTSPNPPVGCVIVDDDGEIVGEGYHRK----AGGPHAEVNALASAGEK-------------LARGAT 63 (115)
T ss_pred CHHHHHHHHhcccccCCCCCEEEEEEeCCCeEEEEecCCC----CCcccHHHHHHHHHhhc-------------CCCCeE
Confidence 78999999999 67789999999997 599999999985 39999999999999753 368999
Q ss_pred EEecCCCh------HHHHHHHHHhCCCeEEEeecCCCCcc
Q 029549 93 LYVTCEPC------IMCAAALSILGIKEVYYGCANEKFGG 126 (191)
Q Consensus 93 ly~T~EPC------~mC~~ai~~sgi~rVvy~~~~~~~g~ 126 (191)
||||+||| +||+++|+|+||+||||+.++++.+.
T Consensus 64 ly~TlEPC~~~~~~~mC~~ai~~~gi~~Vv~g~~~~~~~~ 103 (115)
T cd01284 64 LYVTLEPCSHHGKTPPCVDAIIEAGIKRVVVGVRDPNPLV 103 (115)
T ss_pred EEEeCCCCCCCCCchHHHHHHHHHCcCEEEEEecCCCccc
Confidence 99999999 89999999999999999999887543
No 13
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=99.96 E-value=4.8e-29 Score=180.36 Aligned_cols=100 Identities=44% Similarity=0.635 Sum_probs=88.2
Q ss_pred HhHHHHHHHHHHHHHHhhcCCCCcEEEEEee-CCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhcC
Q 029549 10 PDTLAFMDLAIQQAKLALDSLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKF 88 (191)
Q Consensus 10 ~~~~~~m~~Ai~~A~~a~~~~~~pvGavIv~-~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~ 88 (191)
++|+.||++|+++|+++...++.|||||||+ +|+||+.|+|......+++.|||++||.++.+. .. ..+
T Consensus 2 ~~~~~~m~~a~~~a~~s~~~~~~~vgaviv~~~~~~i~~g~n~~~~~~~~~~HAE~~Ai~~~~~~-~~---------~~~ 71 (102)
T PF00383_consen 2 EWDEEFMRIAIELAKRSRPCGNFPVGAVIVDPDGKIIATGYNGEPPGKNPTIHAEMNAIRKAARN-GG---------SSL 71 (102)
T ss_dssp CHHHHHHHHHHHHHHTHBTTTSSSEEEEEEETTTEEEEEEESBHHSTTGGTB-HHHHHHHHHHHT-TS---------SGE
T ss_pred HHHHHHHHHHHHHHHhccccCCCCEEEEEEeccCccEEEEeeeeeeeccccccchhhhhhhhhhh-cc---------ccc
Confidence 3789999999999999987889999999999 999999999998877889999999999999876 21 236
Q ss_pred CCcEEEecCCChHHHHHHHHHhCCCeEEEee
Q 029549 89 SKCCLYVTCEPCIMCAAALSILGIKEVYYGC 119 (191)
Q Consensus 89 ~~~~ly~T~EPC~mC~~ai~~sgi~rVvy~~ 119 (191)
.+++||+|+|||.||+++|+|+||+||||+.
T Consensus 72 ~~~~lyvt~ePC~~C~~ai~~~gi~~vvy~~ 102 (102)
T PF00383_consen 72 KGCTLYVTLEPCGMCAMAIVHAGIKRVVYGT 102 (102)
T ss_dssp TTEEEEEEE--BHHHHHHHHHHTSSEEEEEE
T ss_pred cCcccccCCCCHHHHHHHHHHHCcCeEEEeC
Confidence 8999999999999999999999999999984
No 14
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate.
Probab=99.95 E-value=4.4e-28 Score=174.43 Aligned_cols=92 Identities=27% Similarity=0.341 Sum_probs=83.6
Q ss_pred HHHHHHHHHHh-hcCCCCcEEEEEeeC--CeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhcCCCcE
Q 029549 16 MDLAIQQAKLA-LDSLEVPVGCVILED--GKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCC 92 (191)
Q Consensus 16 m~~Ai~~A~~a-~~~~~~pvGavIv~~--g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (191)
|+.|+++|+++ ...+++|||||||++ |+|++.|+|......+++.|||++||+++.+.. .+++++
T Consensus 1 m~~a~~~a~~a~~~~~~~pVGaviv~~~~g~ii~~g~n~~~~~~~~~~HAE~~ai~~a~~~~------------~~~~~t 68 (96)
T cd00786 1 MTEALKAADLGYAKESNFQVGACLVNKKDGGKVGRGCNIENAAYSMCNHAERTALFNAGSEG------------DTKGQM 68 (96)
T ss_pred CHHHHHHHHhccCCCCCCCEEEEEEEeCCCCeEeeeEeccCCCCCCeeCHHHHHHHHHHHcC------------CCCceE
Confidence 78899999998 567899999999974 999999999998889999999999999986542 268999
Q ss_pred EEecCCChHHHHHHHHHhCCCeEEEee
Q 029549 93 LYVTCEPCIMCAAALSILGIKEVYYGC 119 (191)
Q Consensus 93 ly~T~EPC~mC~~ai~~sgi~rVvy~~ 119 (191)
||+|+|||.||+++|+|+||++|||+.
T Consensus 69 ly~tlePC~mC~~ai~~~gi~~Vv~~~ 95 (96)
T cd00786 69 LYVALSPCGACAQLIIELGIKDVIVVL 95 (96)
T ss_pred EEEECCChHHHHHHHHHhCCCCEEEee
Confidence 999999999999999999999999985
No 15
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=99.90 E-value=5.2e-23 Score=159.47 Aligned_cols=121 Identities=31% Similarity=0.340 Sum_probs=98.0
Q ss_pred HhHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEEeCCCcccCC----------------------cccchHHHHH
Q 029549 10 PDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRN----------------------ATRHAEMEAI 67 (191)
Q Consensus 10 ~~~~~~m~~Ai~~A~~a~~~~~~pvGavIv~~g~Ii~~g~n~~~~~~~----------------------~~~HAE~~Ai 67 (191)
.+|++||+.|...|.+|. ..+..||||||+|++||++|+|..+...+ -+.|||++||
T Consensus 7 ~wdeyfm~~A~l~a~Rst-c~r~~VGAvIvkd~rIiatGYNG~p~g~~~c~~~g~~~~~~~~~~~~~~~~r~vHAE~NAi 85 (164)
T COG2131 7 MWDEYFMAIAELVALRST-CPRRQVGAVIVKDGRIIATGYNGAPSGEDHCIDRGCLRDKVVFVTTCGHCCRTLHAEQNAI 85 (164)
T ss_pred HHHHHHHHHHHHHHHHcc-CcccceeEEEEeCCeEEEeecCCCCcccCCcCccCceecccccccchhHHHHHHHHHHHHH
Confidence 589999999999999985 66899999999999999999998775321 2369999999
Q ss_pred HHHHHHhhhCCCChhhhhhcCCCcEEEecCCChHHHHHHHHHhCCCeEEEeecCCCCccccccccccccccccccccccc
Q 029549 68 DVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVL 147 (191)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~ly~T~EPC~mC~~ai~~sgi~rVvy~~~~~~~g~~g~~~~l~~~~~~~~~~~~~l 147 (191)
-++++... .+.++|||+|+.||.+|+..|+++||++|||+.+.++.-. .+ ...+.+
T Consensus 86 l~aa~~g~-----------~~~~atlYvt~~PC~~Cak~Ii~aGIk~Vvy~~~Y~~~~~---------~~----~s~~l~ 141 (164)
T COG2131 86 LQAARHGV-----------GLEGATLYVTHFPCSNCAKLIIQAGIKEVVYAEPYPTETV---------AP----YSQELL 141 (164)
T ss_pred HHHHhcCC-----------CCCCcEEEEEecccHHHHHHHHHhCceEEEeecCCCcchh---------hH----HHHHHH
Confidence 99987532 3589999999999999999999999999999987765310 00 123556
Q ss_pred CCCCeEEE
Q 029549 148 GRKGFKCT 155 (191)
Q Consensus 148 ~~~~i~V~ 155 (191)
.+.|+++.
T Consensus 142 ~~agv~~~ 149 (164)
T COG2131 142 EEAGVKVR 149 (164)
T ss_pred HhCCceEE
Confidence 67788775
No 16
>KOG2771 consensus Subunit of tRNA-specific adenosine-34 deaminase [RNA processing and modification]
Probab=99.82 E-value=3.3e-20 Score=157.22 Aligned_cols=143 Identities=24% Similarity=0.362 Sum_probs=114.3
Q ss_pred HhHHHHHHHHHHHHHHhhcCCCCcEEEEEee--CCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhC----------
Q 029549 10 PDTLAFMDLAIQQAKLALDSLEVPVGCVILE--DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKN---------- 77 (191)
Q Consensus 10 ~~~~~~m~~Ai~~A~~a~~~~~~pvGavIv~--~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~---------- 77 (191)
.++.++|+.+|.+|..+... .++|++|++ ...|++.|...+- ..+|..|+-|+++...+++....
T Consensus 165 ~~~~ri~e~~I~~a~~~~~~--~~~~a~I~~p~~~~Via~~~~~~~-~~~P~eh~~mv~v~~v~rrq~~~~~~~~~~~~~ 241 (344)
T KOG2771|consen 165 GEIARIGELLIAMATDGHAS--RPVSAAIVDPVMDRVIAAGTGEVC-AYNPIEHCVMVLVHFVARRQEEGTWDLHPIPLL 241 (344)
T ss_pred HHHHHHHHHHHHHHhhhccc--cCccceecCCccceEEecCCCccc-ccCcHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34667789999999887654 999999997 4556666655543 34799999999999988876543
Q ss_pred -----------------CCCh--hhhhhcCCCcEEEecCCChHHHHHHHHHhCCCeEEEeecCCCCcccccccccccccc
Q 029549 78 -----------------GLSQ--SEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDS 138 (191)
Q Consensus 78 -----------------~~~~--~~~~~~~~~~~ly~T~EPC~mC~~ai~~sgi~rVvy~~~~~~~g~~g~~~~l~~~~~ 138 (191)
..+. +..+|.|+|+++|+|+|||.||+|||+|+||+||+|+.+++..||.++.+++|....
T Consensus 242 ~f~~~~~~~~~~~~~v~~~D~~~d~~pYLCtgydv~ll~EPC~MCsMALvHsRikRvfy~~~~s~~G~L~s~~~i~~~k~ 321 (344)
T KOG2771|consen 242 IFNAVSSPFYKQTVAVQLLDVSADSFPYLCTGYDVYLLHEPCAMCSMALVHSRIKRVFYCKPMSTAGGLGSLYRIHQRKS 321 (344)
T ss_pred ccccccchhhhhhchhccccccccccceeeecceEEEecChHHHHHHHHHHHhhhheeeccCCCCCCCccceeEeeeccc
Confidence 0122 233599999999999999999999999999999999999899999999999887665
Q ss_pred cccccccccCCCCeEEEccCCHHHHH
Q 029549 139 KMLNSGDVLGRKGFKCTGGVMASEAV 164 (191)
Q Consensus 139 ~~~~~~~~l~~~~i~V~~gvl~~e~~ 164 (191)
+| +.++|..+++++++.
T Consensus 322 LN---------hry~vfr~~~e~d~~ 338 (344)
T KOG2771|consen 322 LN---------HRYEVFRGYLEEDPI 338 (344)
T ss_pred cC---------cceEEEEeecccccc
Confidence 54 678898888877654
No 17
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes.
Probab=99.77 E-value=2.1e-18 Score=127.13 Aligned_cols=95 Identities=24% Similarity=0.303 Sum_probs=81.2
Q ss_pred HHHHHHHHHhh-cCCCCcEEEEEee-CCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhcCCCcEEE
Q 029549 17 DLAIQQAKLAL-DSLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLY 94 (191)
Q Consensus 17 ~~Ai~~A~~a~-~~~~~pvGavIv~-~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly 94 (191)
..|++.++.+. ..++.||||+|+. +|+|+ .|+|......+++.|||+.||.++..... ....+++|
T Consensus 2 ~~a~~~~~~a~~~~~~~~vga~i~~~~g~i~-~G~n~e~~~~~~~~hAE~~ai~~~~~~~~-----------~~~~~~i~ 69 (112)
T cd01283 2 EAALAAAEFAYAPYSNFTVGAALLTKDGRIF-TGVNVENASYGLTLCAERTAIGKAVSEGL-----------RRYLVTWA 69 (112)
T ss_pred HHHHHHHHhCcCCCCCCeEEEEEEECCCCEE-EeEEeecCCCCCCcCHHHHHHHHHHHcCC-----------CceEEEEE
Confidence 45777788774 4479999999996 79998 89999888889999999999999976432 24689999
Q ss_pred ec-----CCChHHHHHHHHHhCCCeEEEeecCCC
Q 029549 95 VT-----CEPCIMCAAALSILGIKEVYYGCANEK 123 (191)
Q Consensus 95 ~T-----~EPC~mC~~ai~~sgi~rVvy~~~~~~ 123 (191)
+| +|||.||+++|.+.++++|+|...+++
T Consensus 70 vs~~~~~~sPC~~C~~~l~~~~~~~v~~~~~~~~ 103 (112)
T cd01283 70 VSDEGGVWSPCGACRQVLAEFLPSRLYIIIDNPK 103 (112)
T ss_pred EECCCCccCCCHHHHHHHHHhCCCCeEEEEEcCC
Confidence 99 999999999999999999999987664
No 18
>KOG3127 consensus Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=99.76 E-value=4.1e-18 Score=136.77 Aligned_cols=104 Identities=31% Similarity=0.424 Sum_probs=87.4
Q ss_pred CCCCCCHhHHHHHHHHHHHHHHhhcCCCCcEEEEEee-CCeEEEEEeCCCcccC--------------------Ccccch
Q 029549 4 SGEEWSPDTLAFMDLAIQQAKLALDSLEVPVGCVILE-DGKVIAAGRNRTTETR--------------------NATRHA 62 (191)
Q Consensus 4 ~~~~~~~~~~~~m~~Ai~~A~~a~~~~~~pvGavIv~-~g~Ii~~g~n~~~~~~--------------------~~~~HA 62 (191)
+...-.++|++||.+|.-.|+++. .++..|||+||+ ++.||+.|+|..+... --..||
T Consensus 59 k~~~~lswd~yFM~iA~LsA~RSk-DpntqVGaCiv~~~n~iVg~GYNgfP~gc~~~vfp~~~~~~~~~~~~k~~yv~HA 137 (230)
T KOG3127|consen 59 KRNGYLSWDDYFMAIAFLSAKRSK-DPNTQVGACIVDRENRIVGTGYNGFPRGCSDDVFPWCKAALSTNLDLKYCYVVHA 137 (230)
T ss_pred ccccCccHHHHHHHHHHHHHHhcc-CcccceeeEEEcCCCEEEEeccCCCcCCCCCCCCcccccccccCCCcceEEEeeh
Confidence 344556789999999999999987 459999988885 9999999999877531 123699
Q ss_pred HHHHHHHHHHHhhhCCCChhhhhhcCCCcEEEecCCChHHHHHHHHHhCCCeEEEeecC
Q 029549 63 EMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCAN 121 (191)
Q Consensus 63 E~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~T~EPC~mC~~ai~~sgi~rVvy~~~~ 121 (191)
|++||.++.+ ....++++|+|+-||.-|+..|+++||+.|||+...
T Consensus 138 E~NAi~~~~~-------------~~~~~~~lYvtl~PC~~Ca~liiq~GIkeV~~~~~~ 183 (230)
T KOG3127|consen 138 EENAILNKGR-------------ERVGGCSLYVTLCPCNECAKLIIQAGIKEVYYSSSY 183 (230)
T ss_pred HHHHHHHhCc-------------cccCCceEEEeecchHHHHHHHHHhhhhheeecccc
Confidence 9999987753 346789999999999999999999999999999765
No 19
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=99.32 E-value=1.9e-11 Score=92.21 Aligned_cols=87 Identities=24% Similarity=0.335 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhhcC-CCCcEEEEEee-CCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhcCCCc
Q 029549 14 AFMDLAIQQAKLALDS-LEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKC 91 (191)
Q Consensus 14 ~~m~~Ai~~A~~a~~~-~~~pvGavIv~-~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~ 91 (191)
...+.|.+.+++++.. .++||||+|+. ||+|+. |.|..+...+++.|||+.||.++...... .+...
T Consensus 2 ~l~~~a~~a~~~ay~PyS~~~vgAa~~~~~G~i~~-G~n~e~~~~~~s~~AE~~Ai~~a~~~g~~----------~i~~i 70 (127)
T TIGR01354 2 KLFKAAQEARKNAYAPYSNFKVGAALLTKDGRIFT-GVNVENASYPLTICAERSAIGKAISAGYR----------KFVAI 70 (127)
T ss_pred HHHHHHHHHHHhcCCCcCCCeEEEEEEeCCCCEEE-EEeecccCCCCCcCHHHHHHHHHHHcCCC----------CeEEE
Confidence 3567888999998865 48999999995 899986 99999888999999999999999765321 23344
Q ss_pred EEEe----cCCChHHHHHHHHHhC
Q 029549 92 CLYV----TCEPCIMCAAALSILG 111 (191)
Q Consensus 92 ~ly~----T~EPC~mC~~ai~~sg 111 (191)
.++. ...||.||.+.|...+
T Consensus 71 ~vv~~~~~~~sPCG~Crq~l~e~~ 94 (127)
T TIGR01354 71 AVADSADDPVSPCGACRQVLAEFA 94 (127)
T ss_pred EEEeCCCCCcCccHHHHHHHHHhC
Confidence 4443 5789999999999987
No 20
>PF14439 Bd3614-deam: Bd3614-like deaminase
Probab=99.20 E-value=1.2e-10 Score=85.23 Aligned_cols=90 Identities=24% Similarity=0.240 Sum_probs=67.7
Q ss_pred CCcEEEEEee-CCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhh-hC-----------CCChhhhhhcCCCcEEEecC
Q 029549 31 EVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQ-KN-----------GLSQSEIAEKFSKCCLYVTC 97 (191)
Q Consensus 31 ~~pvGavIv~-~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~-~~-----------~~~~~~~~~~~~~~~ly~T~ 97 (191)
...|-|.+|+ +|+++..+.|... .+-+.|||++.+.-...... .. +-.+........|++||+|+
T Consensus 7 DR~VvA~lv~~~G~l~daa~NtNa--~N~~LHAE~NLl~p~~~~~~~~~~~~~d~~~~~~g~g~~~~~~l~~ga~l~vTl 84 (136)
T PF14439_consen 7 DRRVVAALVSPDGELVDAAVNTNA--DNKMLHAEWNLLMPWLWREWVDSPTDDDEIGNRPGDGPEERRPLPPGARLLVTL 84 (136)
T ss_pred ccceeEEEECCCCcEEEeeeccCC--ccceeehhhhhhhHHHHhhcccCCCcccccccCCCcchhhcCcCCCCcEEEEec
Confidence 4567777776 8999999999753 68999999999987655431 00 01112223456899999999
Q ss_pred CChHHHHHHHHHhCC-------CeEEEeecCC
Q 029549 98 EPCIMCAAALSILGI-------KEVYYGCANE 122 (191)
Q Consensus 98 EPC~mC~~ai~~sgi-------~rVvy~~~~~ 122 (191)
.||-||+..+.++.. .+|||+.++|
T Consensus 85 qcCkMCAalv~a~~d~pg~~~~~~vvY~~ed~ 116 (136)
T PF14439_consen 85 QCCKMCAALVCAASDRPGRRVPIDVVYLNEDP 116 (136)
T ss_pred hhHHHHHHHHHHHhhCcCCccceEEEEecCCC
Confidence 999999999999876 7899987665
No 21
>PRK06848 hypothetical protein; Validated
Probab=99.13 E-value=1.2e-09 Score=83.59 Aligned_cols=95 Identities=16% Similarity=0.167 Sum_probs=72.4
Q ss_pred CCHhHHHHHHHHHHHHHHhhcCCCCcEEEEEee-CCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhh
Q 029549 8 WSPDTLAFMDLAIQQAKLALDSLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAE 86 (191)
Q Consensus 8 ~~~~~~~~m~~Ai~~A~~a~~~~~~pvGavIv~-~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~ 86 (191)
++.+++.+++.|.+..+.++...+++|||++.. ||+|+ .|.|..+.....+.|||+.||..+..... ..
T Consensus 3 ~~~~~~~L~~~A~~a~~~ay~ps~f~VgAa~l~~~G~i~-~G~NvEnas~~~tiCAEr~Ai~~av~~g~-~~-------- 72 (139)
T PRK06848 3 LNSEDYELIKAAEKVIEKRYRNDWHHVGAALRTKTGRIY-AAVHLEAYVGRITVCAEAIAIGKAISEGD-HE-------- 72 (139)
T ss_pred cCHHHHHHHHHHHHHHHhccCCCCCcEEEEEEeCCCCEE-EEEEeecCCCCcccCHHHHHHHHHHHcCC-Cc--------
Confidence 456777899999999999987779999999885 99988 99998877778899999999999865421 10
Q ss_pred cCCCcEEEe------------cCCChHHHHHHHHHhCCC
Q 029549 87 KFSKCCLYV------------TCEPCIMCAAALSILGIK 113 (191)
Q Consensus 87 ~~~~~~ly~------------T~EPC~mC~~ai~~sgi~ 113 (191)
+....+.. ...||.+|.+.|.+.+-.
T Consensus 73 -i~~i~~v~~~~~~~~~~~~~~~~PCG~CRQvl~E~~~~ 110 (139)
T PRK06848 73 -IDTIVAVRHPKPHEDDREIWVVSPCGACRELISDYGKN 110 (139)
T ss_pred -eEEEEEEecCcccccccCCCccCCChhhHHHHHHhCCC
Confidence 11111111 256999999999998633
No 22
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=99.01 E-value=7.8e-10 Score=96.77 Aligned_cols=74 Identities=18% Similarity=0.147 Sum_probs=60.4
Q ss_pred CCCcEEEecCCChHHHHHHHHHhCCCeEEEeecCCCCcccccccccccccccccccccccCCCCeEEEccCCHHHHHHHH
Q 029549 88 FSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLF 167 (191)
Q Consensus 88 ~~~~~ly~T~EPC~mC~~ai~~sgi~rVvy~~~~~~~g~~g~~~~l~~~~~~~~~~~~~l~~~~i~V~~gvl~~e~~~l~ 167 (191)
..|.++|+|+|||.-|+.+|+.+||+|||+++ |++..|.+. +-...+.|+++||+| .|++++|+..++
T Consensus 43 i~g~~i~~s~~p~~~cad~ii~~gi~rVVi~~-D~d~~G~~~----------~~~~~~~L~~aGi~V-~~~l~~e~~~l~ 110 (360)
T PRK14719 43 INANFITVSNTPVFQIADDLIAENISEVILLT-DFDRAGRVY----------AKNIMEEFQSRGIKV-NNLIRKEIIKYS 110 (360)
T ss_pred CCCcEEEEeCCchHHHHHHHHHcCCCEEEEEE-CCCCCCCcc----------chHHHHHHHHCCCEE-EeehHHHHHHHh
Confidence 57899999999999999999999999999999 666433321 111246789999999 579999999999
Q ss_pred HHHHHh
Q 029549 168 RSFYEQ 173 (191)
Q Consensus 168 ~~f~~~ 173 (191)
+.|++.
T Consensus 111 ~~~~~~ 116 (360)
T PRK14719 111 RGDLKD 116 (360)
T ss_pred HHhhhc
Confidence 987765
No 23
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=98.86 E-value=3e-08 Score=75.08 Aligned_cols=95 Identities=23% Similarity=0.299 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHhhcC-CCCcEEEEEe-eCCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhcCCCc
Q 029549 14 AFMDLAIQQAKLALDS-LEVPVGCVIL-EDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKC 91 (191)
Q Consensus 14 ~~m~~Ai~~A~~a~~~-~~~pvGavIv-~~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~ 91 (191)
..+..|.+.+..|+.. .+++|||+|. ++|+|+ +|.|-.+.+..-+.|||..||.++... +.. .....
T Consensus 7 ~l~~~a~~a~~~ay~PYS~F~VGAa~~t~~G~i~-tG~NiEnasy~~t~CAErsAI~~ais~-G~~---------~~~~v 75 (134)
T COG0295 7 ELFALAPEAAANAYAPYSKFKVGAALRTKDGRIY-TGANVENASYGLTVCAERSAIFKAISE-GKR---------KFDAV 75 (134)
T ss_pred HHHHHHHHHHHhccCcccCCcEEEEEEeCCCCEE-EEEeeecccccchhhHHHHHHHHHHHc-CCC---------cEEEE
Confidence 4455666666666654 4999999998 488887 999999988999999999999999765 221 12222
Q ss_pred EEEec----CCChHHHHHHHHHhC-CCeEEEee
Q 029549 92 CLYVT----CEPCIMCAAALSILG-IKEVYYGC 119 (191)
Q Consensus 92 ~ly~T----~EPC~mC~~ai~~sg-i~rVvy~~ 119 (191)
.+|.. .-||.+|.+-|.... -...+|-.
T Consensus 76 ~v~~~~~~~~sPCG~CRQ~i~Ef~~~d~~ii~~ 108 (134)
T COG0295 76 VVVADTGKPVSPCGACRQVLAEFCGDDTLIILL 108 (134)
T ss_pred EEEcCCCCCcCCcHHHHHHHHHhcCCCceEEEe
Confidence 33332 789999999999876 44445544
No 24
>PRK08298 cytidine deaminase; Validated
Probab=98.85 E-value=4e-08 Score=74.89 Aligned_cols=94 Identities=15% Similarity=0.088 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcEEEEEee-CCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhcCC
Q 029549 11 DTLAFMDLAIQQAKLALDSLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFS 89 (191)
Q Consensus 11 ~~~~~m~~Ai~~A~~a~~~~~~pvGavIv~-~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~ 89 (191)
.++.+++.|.+..+.++...+ +|||+|+. ||+|+ +|.|-.+.....+.+||+.||..+..... . .-
T Consensus 3 ~~~~L~~~A~~a~~~aY~PYS-~VgAAllt~dG~i~-tG~NvEnas~~~t~CAEr~Ai~~av~~G~-~----------~~ 69 (136)
T PRK08298 3 IEQALYDVAKQLIEQRYPNGW-GGAAAMRVEDGTIL-TSVAPEVINASTELCMETGAICEAHKLQK-R----------VT 69 (136)
T ss_pred HHHHHHHHHHHHHHhccCCCC-ceeEEEEeCCCCEE-EEEeecCCCCCcchhHHHHHHHHHHHCCC-c----------eE
Confidence 356688899998888887667 99999985 99988 99998887788999999999998865421 1 11
Q ss_pred CcEEEe---------cCCChHHHHHHHHHhCCCeEEE
Q 029549 90 KCCLYV---------TCEPCIMCAAALSILGIKEVYY 117 (191)
Q Consensus 90 ~~~ly~---------T~EPC~mC~~ai~~sgi~rVvy 117 (191)
...+.+ ...||.+|.+.|...+-.-.|+
T Consensus 70 ~~i~v~~~~~~~~~~~~sPCG~CRQvl~Ef~~~~~v~ 106 (136)
T PRK08298 70 HSICVARENEHSELKVLSPCGVCQERLFYWGPDVMCA 106 (136)
T ss_pred EEEEEEcCCCcCCCcccCCChhHHHHHHHhCCCCEEE
Confidence 111111 1359999999999986443333
No 25
>PRK12411 cytidine deaminase; Provisional
Probab=98.81 E-value=7.4e-08 Score=73.10 Aligned_cols=88 Identities=24% Similarity=0.316 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHhhcC-CCCcEEEEEee-CCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhcCCC
Q 029549 13 LAFMDLAIQQAKLALDS-LEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSK 90 (191)
Q Consensus 13 ~~~m~~Ai~~A~~a~~~-~~~pvGavIv~-~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~ 90 (191)
+.+++.|.+.+.+++.. .+++|||++.. +|+|+ .|.|..+.....+.|||..||..+..... . .+..
T Consensus 4 ~~L~~~a~~~~~~ay~pyS~~~VgAa~~t~~G~i~-~G~nvEn~s~~~s~CAE~~Ai~~av~~g~-~---------~i~~ 72 (132)
T PRK12411 4 KQLIQEAIEARKQAYVPYSKFQVGAALLTQDGKVY-RGCNVENASYGLCNCAERTALFKAVSEGD-K---------EFVA 72 (132)
T ss_pred HHHHHHHHHHHHhcCCCccCCceEEEEEeCCCCEE-EEEEeecCCCCcCcCHHHHHHHHHHHCCC-C---------ceEE
Confidence 45788888888888865 57999999985 99988 99998877778899999999998864321 1 1111
Q ss_pred cEEEe----cCCChHHHHHHHHHhC
Q 029549 91 CCLYV----TCEPCIMCAAALSILG 111 (191)
Q Consensus 91 ~~ly~----T~EPC~mC~~ai~~sg 111 (191)
..++. ...||.+|.+.|.+..
T Consensus 73 i~v~~~~~~~~sPCG~CRQ~l~Ef~ 97 (132)
T PRK12411 73 IAIVADTKRPVPPCGACRQVMVELC 97 (132)
T ss_pred EEEEeCCCCCcCCchhHHHHHHHhC
Confidence 11111 2469999999999964
No 26
>PRK05578 cytidine deaminase; Validated
Probab=98.80 E-value=7.7e-08 Score=72.92 Aligned_cols=88 Identities=24% Similarity=0.360 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHhhcC-CCCcEEEEEee-CCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhcCCC
Q 029549 13 LAFMDLAIQQAKLALDS-LEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSK 90 (191)
Q Consensus 13 ~~~m~~Ai~~A~~a~~~-~~~pvGavIv~-~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~ 90 (191)
+.+++.|.+..++++.. .+++|||+|.. +|+|. .|.|..+.....+.|||+.||..+...... .+.-
T Consensus 4 ~~L~~~a~~~~~~ay~PyS~f~Vgaa~~~~~G~i~-~G~nvEna~~~~~~CAE~~Ai~~av~~G~~----------~i~~ 72 (131)
T PRK05578 4 KELIEAAIEASEKAYAPYSKFPVGAALLTDDGRIY-TGCNIENASYGLTNCAERTAIFKAISEGGG----------RLVA 72 (131)
T ss_pred HHHHHHHHHHHHhcCCCcCCCceEEEEEeCCCCEE-EEEEeeCccccCCcCHHHHHHHHHHHcCCC----------ceEE
Confidence 45788888888888864 48999999985 99987 899987777789999999999998643211 1111
Q ss_pred cEEEe----cCCChHHHHHHHHHhC
Q 029549 91 CCLYV----TCEPCIMCAAALSILG 111 (191)
Q Consensus 91 ~~ly~----T~EPC~mC~~ai~~sg 111 (191)
..++. ...||.+|.+.|.+..
T Consensus 73 i~vv~~~~~~~sPCG~CRQ~l~e~~ 97 (131)
T PRK05578 73 IACVGETGEPLSPCGRCRQVLAEFG 97 (131)
T ss_pred EEEEecCCCccCccHHHHHHHHHhC
Confidence 12211 3679999999999875
No 27
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric. This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.
Probab=98.66 E-value=1.7e-07 Score=79.31 Aligned_cols=88 Identities=24% Similarity=0.201 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHHHhhcC-CCCcEEEEEee-CCeEEEEEeCCC--cccCCcccchHHHHHHHHHHHhhhCCCChhhhhh
Q 029549 11 DTLAFMDLAIQQAKLALDS-LEVPVGCVILE-DGKVIAAGRNRT--TETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAE 86 (191)
Q Consensus 11 ~~~~~m~~Ai~~A~~a~~~-~~~pvGavIv~-~g~Ii~~g~n~~--~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~ 86 (191)
+++.+++.|.+.++.|+.. .+++|||++.. +|+|+ .|.|.. +.....+.|||..||.++......
T Consensus 21 ~~~~L~~~a~~a~~~AyaPYS~F~VGAall~~~G~iy-~GvNvE~~nas~~~tiCAEr~Ai~~Av~~Ge~---------- 89 (283)
T TIGR01355 21 DPKLLPKLIPKAASYARAPISKFNVGAVGRGSSGRFY-LGVNVEFPGLPLHHSIHAEQFLISHLALNNER---------- 89 (283)
T ss_pred hHHHHHHHHHHHHhcCcCCccCCeeeEEEEeCCCCEE-EEEEeccCCCCCCccccHHHHHHHHHHHcCCC----------
Confidence 4457788888888887754 49999999985 99988 899976 445567899999999888654211
Q ss_pred cCCCcEEEecCCChHHHHHHHHHhC
Q 029549 87 KFSKCCLYVTCEPCIMCAAALSILG 111 (191)
Q Consensus 87 ~~~~~~ly~T~EPC~mC~~ai~~sg 111 (191)
.=..+.++..||.+|.+.|....
T Consensus 90 --~i~~Iav~~~PCG~CRQ~l~Ef~ 112 (283)
T TIGR01355 90 --GLNDLAVSYAPCGHCRQFLNEIR 112 (283)
T ss_pred --ceEEEEEEeCCcchhHHHHHHhc
Confidence 22345666889999999999873
No 28
>PLN02402 cytidine deaminase
Probab=98.47 E-value=7.7e-07 Score=75.85 Aligned_cols=87 Identities=22% Similarity=0.206 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHhhcC-CCCcEEEEEee-CCeEEEEEeCCCcccCCc--ccchHHHHHHHHHHHhhhCCCChhhhhhc
Q 029549 12 TLAFMDLAIQQAKLALDS-LEVPVGCVILE-DGKVIAAGRNRTTETRNA--TRHAEMEAIDVLLDQWQKNGLSQSEIAEK 87 (191)
Q Consensus 12 ~~~~m~~Ai~~A~~a~~~-~~~pvGavIv~-~g~Ii~~g~n~~~~~~~~--~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~ 87 (191)
++..+.++....+.++.. .+++|||++.. +|+|. .|.|..+..... +.|||..||.++...... .
T Consensus 25 ~~ll~~l~~~A~~~AyaPYS~F~VGAa~l~~~G~i~-~GvNVEnasy~l~~tiCAEr~Ai~~av~~G~~----------~ 93 (303)
T PLN02402 25 LQLLPSLVKSAQSLARPPISKYHVGAVGLGSSGRIF-LGVNLEFPGLPLHHSVHAEQFLITNLTLNAEP----------H 93 (303)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCeeeEEEEeCCCCEE-EEEeeecCCCCCCCcccHHHHHHHHHHHcCCC----------c
Confidence 344455555555555543 48999999985 99987 899987665444 899999999988654211 1
Q ss_pred CCCcEEEecCCChHHHHHHHHHhC
Q 029549 88 FSKCCLYVTCEPCIMCAAALSILG 111 (191)
Q Consensus 88 ~~~~~ly~T~EPC~mC~~ai~~sg 111 (191)
+ -.+.++..||.+|.+.|....
T Consensus 94 i--~~iaV~~sPCG~CRQ~l~Ef~ 115 (303)
T PLN02402 94 L--KYVAVSAAPCGHCRQFFQEIR 115 (303)
T ss_pred e--EEEEEEeCCCcccHHHHHHhc
Confidence 2 245667789999999999873
No 29
>KOG0833 consensus Cytidine deaminase [Nucleotide transport and metabolism]
Probab=98.45 E-value=3.5e-06 Score=65.99 Aligned_cols=94 Identities=22% Similarity=0.259 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHhhcC-CCCcEEEEEe-eCCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhcCC
Q 029549 12 TLAFMDLAIQQAKLALDS-LEVPVGCVIL-EDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFS 89 (191)
Q Consensus 12 ~~~~m~~Ai~~A~~a~~~-~~~pvGavIv-~~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~ 89 (191)
.+.....+.+.-+.++.. .+++||||++ ++|+|+ .|.|-.+-...++.|||+.||.++..+... --
T Consensus 21 ~~~L~~l~~~A~~~AyaPyS~fkVGA~~r~ssGrif-~G~NVEn~~~~~sIcAEr~ai~~l~l~g~~-----------k~ 88 (173)
T KOG0833|consen 21 PQELLKLARKAMKLAYAPYSKFKVGAAGRASSGRIF-LGVNVENASYHHSICAERFAIANLALNGER-----------KF 88 (173)
T ss_pred HHHHHHHHHHHHHhccCCccCCceEEEEEecCCcEE-EeeeecccCCCCcccHHHHHHHHHHHcCcc-----------cc
Confidence 344444444444444433 3899999999 489988 899988888889999999999998765321 11
Q ss_pred CcEEEec------CCChHHHHHHHHHhCCCeEEE
Q 029549 90 KCCLYVT------CEPCIMCAAALSILGIKEVYY 117 (191)
Q Consensus 90 ~~~ly~T------~EPC~mC~~ai~~sgi~rVvy 117 (191)
.+...+. ..||.-|.+.|...+-...++
T Consensus 89 ~~~aV~~~~~~~f~tPCG~CRQfl~Ef~~~~~l~ 122 (173)
T KOG0833|consen 89 RAIAVVAYEDGDFTTPCGVCRQFLREFGNASLLL 122 (173)
T ss_pred eEEEEEecCCCCcCCCcHHHHHHHHHHhhcceee
Confidence 2223333 689999999999999874443
No 30
>PRK09027 cytidine deaminase; Provisional
Probab=98.35 E-value=3.3e-06 Score=71.97 Aligned_cols=97 Identities=16% Similarity=0.176 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHHHhhcCC-CCcEEEEEee-CCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhcC
Q 029549 11 DTLAFMDLAIQQAKLALDSL-EVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKF 88 (191)
Q Consensus 11 ~~~~~m~~Ai~~A~~a~~~~-~~pvGavIv~-~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~ 88 (191)
+++..++.|++.+.+|+... +++||++|.. ||+|+ .|+|-.+...+++.+||..||..+.....+ . ...
T Consensus 188 ~~~~L~~~A~~aa~~SYaPYS~f~vGaAl~~~dG~i~-~G~nvENAAynpslcaer~Al~~~v~~G~~----~----~~i 258 (295)
T PRK09027 188 TGDPLIQAALDAANRSHAPYSQSYSGVALETKDGRIY-TGRYAENAAFNPSLPPLQGALNLLNLSGED----F----SDI 258 (295)
T ss_pred CHHHHHHHHHHHHHhccCCccCCceeEEEEeCCCCEE-EEEEEEcCCCCCcccHHHHHHHHHHHcCCC----c----cCE
Confidence 44568899999999998654 8999999985 89988 999999999999999999999988643211 0 113
Q ss_pred CCcEEEec----CCChHHHHHHHHHhCCCeEE
Q 029549 89 SKCCLYVT----CEPCIMCAAALSILGIKEVY 116 (191)
Q Consensus 89 ~~~~ly~T----~EPC~mC~~ai~~sgi~rVv 116 (191)
....|+.. ..||.+|.+.|...+-..+-
T Consensus 259 ~~i~lv~~~~~~ispcg~cRq~L~ef~~~~~~ 290 (295)
T PRK09027 259 QRAVLVEKADAKLSQWDATQATLKALGCHELE 290 (295)
T ss_pred EEEEEEeCCCCCcCchHHHHHHHHHhCCCCcE
Confidence 34444433 46999999999887644443
No 31
>PLN02182 cytidine deaminase
Probab=98.25 E-value=8.9e-06 Score=70.23 Aligned_cols=81 Identities=22% Similarity=0.206 Sum_probs=55.2
Q ss_pred HHHHHhhcC-CCCcEEEEEee-CCeEEEEEeCCCcccCCc--ccchHHHHHHHHHHHhhhCCCChhhhhhcCCCcEEEec
Q 029549 21 QQAKLALDS-LEVPVGCVILE-DGKVIAAGRNRTTETRNA--TRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVT 96 (191)
Q Consensus 21 ~~A~~a~~~-~~~pvGavIv~-~g~Ii~~g~n~~~~~~~~--~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~T 96 (191)
..+..|+.. .+++|||++.. +|+|. .|.|..+..... +.|||..||..+...... .+....+.+.
T Consensus 54 ~A~~~AyaPyS~F~VGAa~l~~sG~iy-~GvNVEnas~pl~~tICAEr~AI~~A~~~Ge~----------~i~~iaVaV~ 122 (339)
T PLN02182 54 KAMCLARAPISKYKVGAVGRASSGRVY-LGVNVDFPGLPLHHSIHAEQFLVTNLALNSEK----------DLCELAVAIS 122 (339)
T ss_pred HHHhcCcCCccCCeeeEEEEeCCCCEE-EEEEeecCCCccCCccCHHHHHHHHHHHCCCC----------ceEEEEEEEe
Confidence 334444433 38999999985 99987 899987655444 899999999998654211 1111112221
Q ss_pred ------CCChHHHHHHHHHhCC
Q 029549 97 ------CEPCIMCAAALSILGI 112 (191)
Q Consensus 97 ------~EPC~mC~~ai~~sgi 112 (191)
.-||.+|.+.|....-
T Consensus 123 ~~~~~~~sPCG~CRQfm~Ef~~ 144 (339)
T PLN02182 123 TDGKEFGTPCGHCLQFLMEMSN 144 (339)
T ss_pred cCCCCCcCCCchhHHHHHHhCC
Confidence 5799999999999853
No 32
>PRK09027 cytidine deaminase; Provisional
Probab=98.18 E-value=2.3e-05 Score=66.93 Aligned_cols=69 Identities=23% Similarity=0.249 Sum_probs=52.7
Q ss_pred CCCcEEEEEee-CCeEEEEEeCCCcc--cCCcccchHHHHHHHHHHHhhhCCCChhhhhhcCCCcEEEecCCChHHHHHH
Q 029549 30 LEVPVGCVILE-DGKVIAAGRNRTTE--TRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAA 106 (191)
Q Consensus 30 ~~~pvGavIv~-~g~Ii~~g~n~~~~--~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~T~EPC~mC~~a 106 (191)
.+++|||++.. +|+|. .|.|-.+. ....+.|||..||..+..... -.=..+.++..||.+|.+.
T Consensus 69 S~F~VGAa~~~~sG~iy-~GvNvE~~~~s~~~tiCAEr~Ai~~a~~~Ge------------~~i~~I~v~~sPCG~CRQ~ 135 (295)
T PRK09027 69 SHFNVGAIARGVSGNFY-FGANMEFAGAALQQTVHAEQSAISHAWLRGE------------KAIADITVNYTPCGHCRQF 135 (295)
T ss_pred CCCcEEEEEEeCCCCEE-EEEeeccCCCCCCCCcCHHHHHHHHHHHCCC------------CceEEEEEEecCchhhHHH
Confidence 48999999985 99988 89997653 345789999999998865421 1224455667899999999
Q ss_pred HHHhC
Q 029549 107 LSILG 111 (191)
Q Consensus 107 i~~sg 111 (191)
|....
T Consensus 136 l~E~~ 140 (295)
T PRK09027 136 MNELN 140 (295)
T ss_pred HHHhC
Confidence 99874
No 33
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric. This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.
Probab=97.95 E-value=0.00011 Score=62.42 Aligned_cols=94 Identities=16% Similarity=0.198 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHhhcC-CCCcEEEEEee-CCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhcCCC
Q 029549 13 LAFMDLAIQQAKLALDS-LEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSK 90 (191)
Q Consensus 13 ~~~m~~Ai~~A~~a~~~-~~~pvGavIv~-~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~ 90 (191)
+.+++.|++.+++|+.. .+++|||+|+. ||+|+ .|+|..+...+++.+||..||..+.......++ .....
T Consensus 175 ~~l~~~A~~a~~~sYaPYS~f~vgaal~~~~g~i~-~G~nvENAay~~slcaer~Ai~~~v~~g~g~~~------~~i~~ 247 (283)
T TIGR01355 175 SHLKQQALKAANRSYAPYSKSPSGVALLDKEGKVY-RGWYIESAAFNPSLGPVQAALVDFMANGGGKGF------EDIVR 247 (283)
T ss_pred HHHHHHHHHHHHhccCCCcCCceeEEEEeCCCCEE-EEEEeecCCCCCcccHHHHHHHHHHHhCCCCCh------hheeE
Confidence 45888999999999865 48999999986 89987 999999999999999999999988654111111 11222
Q ss_pred cEEEe----cCCChHHHHHHHHHhCCC
Q 029549 91 CCLYV----TCEPCIMCAAALSILGIK 113 (191)
Q Consensus 91 ~~ly~----T~EPC~mC~~ai~~sgi~ 113 (191)
.+|-- ...||.+|...|...+..
T Consensus 248 aVl~e~~~~~vs~~~~~r~~l~~~~p~ 274 (283)
T TIGR01355 248 AVLVEKADAKVSHEATARTLLETIAPS 274 (283)
T ss_pred EEEEecCCCccChHHHHHHHHHHhCCC
Confidence 22222 246999999988876544
No 34
>PLN02402 cytidine deaminase
Probab=97.53 E-value=0.00027 Score=60.47 Aligned_cols=60 Identities=17% Similarity=0.272 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHhhcCC-CCcEEEEEee-CCeEEEEEeCCCcccCCcccchHHHHHHHHHH
Q 029549 12 TLAFMDLAIQQAKLALDSL-EVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLD 72 (191)
Q Consensus 12 ~~~~m~~Ai~~A~~a~~~~-~~pvGavIv~-~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~ 72 (191)
.+.+++.|++.+++|+... +++|||+|+. ||+|+ .|+|..+...+++.+||..||..+..
T Consensus 192 ~~~L~~~A~~a~~~sYaPYS~f~VGaal~~~dG~i~-~G~nvENAay~~slcAer~Ai~~~v~ 253 (303)
T PLN02402 192 SDDLKNEALEAANKSHAPYSNCPSGVALMDCEGKVY-RGSYMESAAYNPSMGPVQAALVAYVA 253 (303)
T ss_pred HHHHHHHHHHHHHcccCCccCCceeEEEEeCCCCEE-EEEEEEcCCCCCcccHHHHHHHHHHH
Confidence 4568899999999998654 8999999986 89987 99999999999999999999998854
No 35
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=96.63 E-value=0.023 Score=43.67 Aligned_cols=69 Identities=26% Similarity=0.352 Sum_probs=51.8
Q ss_pred CCeEEEEEeCCCccc--------------------------CCcccchHHHHHHHHHHHhhhCCCChhhhhhcCCCcEEE
Q 029549 41 DGKVIAAGRNRTTET--------------------------RNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLY 94 (191)
Q Consensus 41 ~g~Ii~~g~n~~~~~--------------------------~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly 94 (191)
+|+++ +|.|...+. .....|||+.||.+|.++... .-...+||
T Consensus 37 ~G~~f-~gvN~~~rp~ad~n~p~~~~dri~~~~~~~~~pn~~~~~~HAE~~aiqqA~d~G~~----------~g~~~tm~ 105 (146)
T PF14437_consen 37 NGQKF-FGVNSTARPIADPNLPTLIRDRIAAKIPGKPGPNNNMAKAHAEAGAIQQAYDAGKT----------VGRSMTMY 105 (146)
T ss_pred CCeEE-EeeCCCCcccCCCCCcceeccccccccccccCccchhHHHHHHHHHHHHHHHhcCc----------cCCeEEEE
Confidence 88877 899976541 113469999999999876211 14689999
Q ss_pred ecCCChHHHHHHHH----HhCCCeEEEeec
Q 029549 95 VTCEPCIMCAAALS----ILGIKEVYYGCA 120 (191)
Q Consensus 95 ~T~EPC~mC~~ai~----~sgi~rVvy~~~ 120 (191)
|...+|..|-+.|- .+|++.+.+-.+
T Consensus 106 Vdr~vC~~C~~~i~~~a~~lGl~~L~I~~~ 135 (146)
T PF14437_consen 106 VDRDVCGYCGGDIPSMAEKLGLKSLTIHEP 135 (146)
T ss_pred ECcccchHHHHHHHHHHHHcCCCeEEEEec
Confidence 99999999988654 579999876554
No 36
>PF08211 dCMP_cyt_deam_2: Cytidine and deoxycytidylate deaminase zinc-binding region ; InterPro: IPR013171 This region contains the zinc-binding domain of cytidine and deoxycytidylate deaminase. Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion.; GO: 0004126 cytidine deaminase activity, 0008270 zinc ion binding; PDB: 1CTU_A 1AF2_A 1ALN_A 1CTT_A 4EG2_C.
Probab=95.97 E-value=0.017 Score=43.38 Aligned_cols=60 Identities=18% Similarity=0.278 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHhhcCC-CCcEEEEEee-CCeEEEEEeCCCcccCCcccchHHHHHHHHHHH
Q 029549 13 LAFMDLAIQQAKLALDSL-EVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQ 73 (191)
Q Consensus 13 ~~~m~~Ai~~A~~a~~~~-~~pvGavIv~-~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~ 73 (191)
+...+.|++.|.+|.... ..|+|++|+. +|+|. .|++-.+...+|+..+...||..+...
T Consensus 34 d~l~~~A~~Aa~~syaPYS~~~sGvAL~~~~G~i~-~G~y~EnAAfNPSl~PlQ~AL~~~~~~ 95 (124)
T PF08211_consen 34 DPLVQAALEAANRSYAPYSKCPSGVALLTSDGRIY-TGRYAENAAFNPSLPPLQAALVQAVLA 95 (124)
T ss_dssp SHHHHHHHHHHCT-B-TTT---EEEEEEETTS-EE-EEE-B--TTSTT-B-HHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhccCCccCCceeEEEEeCCCCEE-EEEEEeecccCCChHHHHHHHHHHHHc
Confidence 346888999999988654 8899999995 89988 899988888999999999999887543
No 37
>PF14431 YwqJ-deaminase: YwqJ-like deaminase
Probab=95.62 E-value=0.067 Score=40.06 Aligned_cols=48 Identities=27% Similarity=0.358 Sum_probs=31.2
Q ss_pred cccchHHHHHHHHHHHhhhCCCChhhhhhcCCCcEEEe-------------cCCChHHHHHHHHHhCC
Q 029549 58 ATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYV-------------TCEPCIMCAAALSILGI 112 (191)
Q Consensus 58 ~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~-------------T~EPC~mC~~ai~~sgi 112 (191)
...|||+.||.+++...... ...+.+..+|+ -..||..|+..+.+.||
T Consensus 65 ~G~cAEv~avn~~L~~~d~~-------~~~~~~a~~~~~~ir~~~~~~~G~~~~pC~nC~~~l~~~~v 125 (125)
T PF14431_consen 65 AGRCAEVIAVNDALWARDAA-------RRSLEGAKITTRRIREPGDPEHGKYAPPCRNCAALLKHFGV 125 (125)
T ss_pred CCcccHHHHHHHHHHhhhcc-------ccccccccceeeeeecccCCCCCCCCCCCchHHHHHhhcCC
Confidence 56799999999998763210 00111222221 36799999999999886
No 38
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=91.12 E-value=0.44 Score=36.12 Aligned_cols=45 Identities=13% Similarity=0.325 Sum_probs=35.6
Q ss_pred ccchHHHHHHHHHHHhhhCCCChhhhhhcC--CCcEEEecCCChHHHHHHHHHhC
Q 029549 59 TRHAEMEAIDVLLDQWQKNGLSQSEIAEKF--SKCCLYVTCEPCIMCAAALSILG 111 (191)
Q Consensus 59 ~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~--~~~~ly~T~EPC~mC~~ai~~sg 111 (191)
...+|...|...++++... ... ...+|||.+.||..|...|.+..
T Consensus 73 ~~DsE~KiL~~ia~~l~~~--------~~~~~G~i~l~te~~pC~SC~~vi~qF~ 119 (133)
T PF14424_consen 73 NNDSEYKILEDIAKKLGDN--------PDPSGGTIDLFTELPPCESCSNVIEQFK 119 (133)
T ss_pred cccHHHHHHHHHHHHhccc--------cccCCceEEEEecCCcChhHHHHHHHHH
Confidence 3578999999999888642 112 46899999999999999888764
No 39
>PF14440 XOO_2897-deam: Xanthomonas XOO_2897-like deaminase
Probab=89.29 E-value=0.61 Score=34.70 Aligned_cols=55 Identities=29% Similarity=0.464 Sum_probs=40.1
Q ss_pred CcccchHHHHHHHHHHHhhhCCCChhhhhhcCCCcEEEecCCChHH---HHHHHHHh--CCCeEEEeecCC
Q 029549 57 NATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIM---CAAALSIL--GIKEVYYGCANE 122 (191)
Q Consensus 57 ~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~T~EPC~m---C~~ai~~s--gi~rVvy~~~~~ 122 (191)
....|+|..++..+.+ .++.+. .=..||+-+|||.. |+..|-.. ++ +|.|.....
T Consensus 43 ~~~~H~E~~il~~l~~----~~v~p~------~I~elYtEl~PC~~~~~C~~~l~~~~p~a-~vt~s~~yg 102 (118)
T PF14440_consen 43 GGKPHSERAILHQLRA----HGVPPE------QITELYTELEPCELGGYCARMLRNSLPGA-EVTYSFDYG 102 (118)
T ss_pred CCCCChHHHHHHHHHH----cCCcHH------HHHHHHHhcccccccchHHHHHHhhCCCC-eEEEeccCC
Confidence 5788999999988764 233322 23568999999988 99999886 44 477776543
No 40
>PF08210 APOBEC_N: APOBEC-like N-terminal domain; InterPro: IPR013158 This domain is found at the N terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. The N-terminal domain of APOBEC-1 like proteins is the catalytic domain, while the C-terminal domain is a pseudocatalyitc domain. More specifically, the catalytic domain is a zinc dependent deaminases domain and is essential for cytidine deamination. APOBEC-3 like members contain two copies of this domain. This family also includes the functionally homologous activation induced deaminase, which is essential for the development of antibody diversity in B lymphocytes. RNA editing by APOBEC-1 requires homodimerisation and this complex interacts with RNA binding proteins to from the editosome [] (and references therein).; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 3IQS_A 3IR2_A 3V4J_B 2KEM_A 2KBO_A 3V4K_A 3E1U_A 2JYW_A 2RPZ_A.
Probab=88.33 E-value=0.67 Score=37.12 Aligned_cols=126 Identities=16% Similarity=0.206 Sum_probs=67.4
Q ss_pred CCcEEEEEee--CCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhcCCCcEEEecCCChHH----HH
Q 029549 31 EVPVGCVILE--DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIM----CA 104 (191)
Q Consensus 31 ~~pvGavIv~--~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~T~EPC~m----C~ 104 (191)
+..+-|.-|+ +|.-+-.|.-... .....|||+.-|......... + +...-.-|.|+|..||.- |+
T Consensus 23 ~~t~Lcy~v~~~~~~~~~~g~~~n~--~~~~~HAE~~fl~~i~~~~~~---~----~~~~y~ITwy~SwSPC~~~~~~Ca 93 (188)
T PF08210_consen 23 NKTYLCYEVEGRDGSWVQRGYFRNE--NCKGRHAELCFLDWIRSWLLF---D----PDQIYRITWYLSWSPCPESDHCCA 93 (188)
T ss_dssp SS-EEEEEEEEECTTEEEECECCST--TSTSB-HHHHHHHHCCCGTB----T----TTSEEEEEEEESSS--CC----HH
T ss_pred CeEEEEEEEEEecCCCceEEEEECC--CCCCCCHHHHHHHHHHHhhcc---C----CCceEEEEEEEecCCCcchhhHHH
Confidence 4556677774 5544556665421 116899999988776332210 1 123456799999999999 99
Q ss_pred HHHHHh-------CCCeEEEeecCCCCcccccccccccccccccccccccCCCCeEEEccCCHHHHHHHHHHHHHhc
Q 029549 105 AALSIL-------GIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQG 174 (191)
Q Consensus 105 ~ai~~s-------gi~rVvy~~~~~~~g~~g~~~~l~~~~~~~~~~~~~l~~~~i~V~~gvl~~e~~~l~~~f~~~~ 174 (191)
..|+.. +|+=.+|...--.. ....+..+-.+...|.++|+.|.. +-.++-...++.|...+
T Consensus 94 ~~i~~FL~~~~~~~v~L~I~~arLY~~--------~~~~~~~~~eGLr~L~~aGv~v~i-M~~~df~~cw~~FV~~~ 161 (188)
T PF08210_consen 94 EKIAEFLKKHLKPNVSLSIFAARLYYH--------WEPEPLWNQEGLRRLASAGVQVEI-MSYKDFEYCWDNFVHNG 161 (188)
T ss_dssp HHHHHHHCCC--TTEEEEEEESS--ST--------TSTT---HHHHHHHHHHCTEEEEE--SHHHHHHHHHCCETTT
T ss_pred HHHHHHHHHhCCCCCeEEEEEEeeeee--------cCCcchhHHHHHHHHHHcCCEEEE-cCHHHHHHHHHhccccc
Confidence 999874 33334554421110 000000011234556678998863 33566677777776433
No 41
>PF14441 OTT_1508_deam: OTT_1508-like deaminase
Probab=68.53 E-value=13 Score=28.05 Aligned_cols=44 Identities=20% Similarity=0.334 Sum_probs=33.4
Q ss_pred CCcccchHHHHHHHHHHHhhhCCCChhhhhhcCCCcEEEecCCChHHHHHHHHHhC
Q 029549 56 RNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILG 111 (191)
Q Consensus 56 ~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~T~EPC~mC~~ai~~sg 111 (191)
..+..|||+..+....+.. ....-.+=+|--||.+|...+...+
T Consensus 64 ~~~~vHaE~~ll~~~~~~~------------~~~~~yIG~SK~~C~lC~~~~~~~~ 107 (142)
T PF14441_consen 64 FKPSVHAEMQLLDHLERHF------------DPPPRYIGCSKPSCFLCYLYFQAHG 107 (142)
T ss_pred CCCCeehHHHHHHHHHHhc------------CCCCCEEEEeCchHHhHHHHHHHhC
Confidence 5688999999998876540 0123345568899999999999988
No 42
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=60.60 E-value=16 Score=19.94 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=13.2
Q ss_pred cEEEEEeeCCeEEEEEeCC
Q 029549 33 PVGCVILEDGKVIAAGRNR 51 (191)
Q Consensus 33 pvGavIv~~g~Ii~~g~n~ 51 (191)
-..++|.++|+|.+.|.|.
T Consensus 9 ~ht~al~~~g~v~~wG~n~ 27 (30)
T PF13540_consen 9 YHTCALTSDGEVYCWGDNN 27 (30)
T ss_dssp SEEEEEE-TTEEEEEE--T
T ss_pred CEEEEEEcCCCEEEEcCCc
Confidence 3567788899999999986
No 43
>PRK13663 hypothetical protein; Provisional
Probab=54.68 E-value=32 Score=31.24 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=42.0
Q ss_pred CCCHhHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhh
Q 029549 7 EWSPDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQ 75 (191)
Q Consensus 7 ~~~~~~~~~m~~Ai~~A~~a~~~~~~pvGavIv~~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~ 75 (191)
.++.+|+.-...|.+.|+.. +.|.+|+-+.||+|| +|-+. +..+|--.+|-+|.+.+.
T Consensus 335 gi~~~dR~vv~~A~~~a~~t----~~pa~AieL~DG~Ii-TGKtS------~LlgasaA~lLNAlK~LA 392 (493)
T PRK13663 335 GITPEDRKVVVAAREKAEET----GEPALAIELPDGTIV-TGKTS------ELLGATAAVLLNALKHLA 392 (493)
T ss_pred CCChhhhHHHHHHHHHHHHh----CCCeEEEEeCCCCEE-eCCCc------cccchHHHHHHHHHHHHc
Confidence 35566666666677766654 357778777899999 77654 778888888888877764
No 44
>PF05507 MAGP: Microfibril-associated glycoprotein (MAGP); InterPro: IPR008673 This family consists of several mammalian microfibril-associated glycoprotein (MAGP) 1 and 2 proteins. MAGP1 and 2 are components of elastic fibres. MAGP-1 has been proposed to bind a C-terminal region of tropoelastin, the soluble precursor of elastin. MAGP-2 was found to interact with fibrillin-1 and -2, as well as fibulin-1, another component of elastic fibres. This suggests that MAGP-2 may be important in the assembly of microfibrils [].; GO: 0001527 microfibril
Probab=52.71 E-value=15 Score=27.68 Aligned_cols=30 Identities=23% Similarity=0.508 Sum_probs=26.9
Q ss_pred CCcEEEecCCChHHHHHHHHHhCCCeEEEe
Q 029549 89 SKCCLYVTCEPCIMCAAALSILGIKEVYYG 118 (191)
Q Consensus 89 ~~~~ly~T~EPC~mC~~ai~~sgi~rVvy~ 118 (191)
.=+.||+-+.||--|...+--..++|+|.-
T Consensus 89 pctRlySvhrP~kqCi~~lCf~slrRmYvI 118 (137)
T PF05507_consen 89 PCTRLYSVHRPCKQCIHQLCFYSLRRMYVI 118 (137)
T ss_pred ceeeehhccccHHHHHHHHHhhceeeEEEe
Confidence 346799999999999999999999999874
No 45
>PRK09732 hypothetical protein; Provisional
Probab=52.26 E-value=1e+02 Score=23.30 Aligned_cols=53 Identities=13% Similarity=0.122 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcEEEEEee-CCeEEEEEeCCCcccCCcccchHHHHHHHHHH
Q 029549 11 DTLAFMDLAIQQAKLALDSLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLD 72 (191)
Q Consensus 11 ~~~~~m~~Ai~~A~~a~~~~~~pvGavIv~-~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~ 72 (191)
.-++.++.|++.|++ -+.||..+||| .|.+++.-.-. +...|.--.|++++..
T Consensus 11 ~A~~~~~aA~~~A~~----~g~~v~iaVvD~~G~l~a~~RmD-----gA~~~s~~iA~~KA~T 64 (134)
T PRK09732 11 MASAIIAAGQEEAQK----NNWSVSIAVADDGGHLLALSRMD-----DCAPIAAYISQEKART 64 (134)
T ss_pred HHHHHHHHHHHHHHH----hCCCEEEEEEcCCCCEEEEEEcC-----CCccccHHHHHHHHHH
Confidence 344455666666664 26799999998 89999776553 4567887888888754
No 46
>PF08903 DUF1846: Domain of unknown function (DUF1846); InterPro: IPR014999 This group of proteins are functionally uncharacterised. ; PDB: 3BH1_B.
Probab=50.71 E-value=41 Score=30.63 Aligned_cols=56 Identities=20% Similarity=0.304 Sum_probs=34.1
Q ss_pred CHhHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhh
Q 029549 9 SPDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQ 75 (191)
Q Consensus 9 ~~~~~~~m~~Ai~~A~~a~~~~~~pvGavIv~~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~ 75 (191)
+.+|+.-...|.+.|++. +.|.+|+-+.||+|| +|.+. ...+|--.+|-++.+.+.
T Consensus 336 ~~~dR~vv~~A~~~ae~t----~~pa~AieL~DG~Iv-TGktS------~LlgasaA~lLNAlK~La 391 (491)
T PF08903_consen 336 TPEDRPVVAAAREKAEET----GAPAAAIELPDGTIV-TGKTS------DLLGASAAALLNALKYLA 391 (491)
T ss_dssp -GGGSTTHHHHHHHHHHH----SS-EEEEE-TTS-EE-EEE--------SSB-HHHHHHHHHHHHHH
T ss_pred ChHhhHHHHHHHHHHHHh----CCCeEEEEeCCCCEE-eCCCc------cccchHHHHHHHHHHHHc
Confidence 334444455566666654 678888888999999 78764 677777777777776654
No 47
>PRK09710 lar restriction alleviation and modification protein; Reviewed
Probab=50.09 E-value=3.4 Score=27.36 Aligned_cols=18 Identities=22% Similarity=0.639 Sum_probs=13.8
Q ss_pred EecCCChHHHHHHHHHhC
Q 029549 94 YVTCEPCIMCAAALSILG 111 (191)
Q Consensus 94 y~T~EPC~mC~~ai~~sg 111 (191)
|-+++|||.|-...+..+
T Consensus 3 ~d~lKPCPFCG~~~~~v~ 20 (64)
T PRK09710 3 YDNVKPCPFCGCPSVTVK 20 (64)
T ss_pred cccccCCCCCCCceeEEE
Confidence 678999999977655444
No 48
>PF02132 RecR: RecR protein; InterPro: IPR023628 The bacterial protein RecR seems to play a role in a recombinational process of DNA repair []. It may act with RecF and RecO. RecR's structure consists of a N-terminal helix-hairpin-helix (HhH) motif, followed by a Cys4 zinc-finger motif, a Toprim domain and a Walker B motif []. This entry represents the C4-type zinc finger.; PDB: 1VDD_D 2V1C_B.
Probab=48.53 E-value=32 Score=20.33 Aligned_cols=20 Identities=25% Similarity=0.559 Sum_probs=13.3
Q ss_pred hcCCCcEEEecCCChHHHHH
Q 029549 86 EKFSKCCLYVTCEPCIMCAA 105 (191)
Q Consensus 86 ~~~~~~~ly~T~EPC~mC~~ 105 (191)
..+.-|--++..+||.-|+.
T Consensus 18 ~~C~~C~nlse~~~C~IC~d 37 (41)
T PF02132_consen 18 KFCSICGNLSEEDPCEICSD 37 (41)
T ss_dssp EE-SSS--EESSSS-HHHH-
T ss_pred CccCCCCCcCCCCcCcCCCC
Confidence 35899999999999999974
No 49
>PF08098 ATX_III: Anemonia sulcata toxin III family; InterPro: IPR012509 This entry occurs within the Anemonia sulcata toxin III (ATX III) neurotoxin family. ATX III is a neurotoxin that is produced by sea anemone; it adopts a compact structure containing four reverse turns and two other chain reversals, but no regular alpha-helix or beta-sheet. A hydrophobic patch found on the surface of the peptide may constitute part of the sodium channel binding surface [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0042151 nematocyst; PDB: 1ANS_A.
Probab=39.47 E-value=10 Score=20.29 Aligned_cols=9 Identities=56% Similarity=1.615 Sum_probs=1.3
Q ss_pred cCCChHHHH
Q 029549 96 TCEPCIMCA 104 (191)
Q Consensus 96 T~EPC~mC~ 104 (191)
|.-||.||.
T Consensus 2 sCCPCamc~ 10 (27)
T PF08098_consen 2 SCCPCAMCK 10 (27)
T ss_dssp -S--S----
T ss_pred cccccccce
Confidence 445777774
No 50
>PRK00611 putative disulfide oxidoreductase; Provisional
Probab=37.88 E-value=15 Score=27.93 Aligned_cols=11 Identities=36% Similarity=1.150 Sum_probs=9.2
Q ss_pred ecCCChHHHHH
Q 029549 95 VTCEPCIMCAA 105 (191)
Q Consensus 95 ~T~EPC~mC~~ 105 (191)
..+|||++|..
T Consensus 31 ~gl~PC~LCiy 41 (135)
T PRK00611 31 LNVEPCVLCYY 41 (135)
T ss_pred cCCCCchHHHH
Confidence 46899999976
No 51
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=35.35 E-value=2e+02 Score=21.99 Aligned_cols=52 Identities=21% Similarity=0.296 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcEEEEEee-CCeEEEEEeCCCcccCCcccchHHHHHHHHHH
Q 029549 12 TLAFMDLAIQQAKLALDSLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLD 72 (191)
Q Consensus 12 ~~~~m~~Ai~~A~~a~~~~~~pvGavIv~-~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~ 72 (191)
-.+.+..|+..|++ ...||...||+ +|.+++.-.- .+...|.--.|+.++..
T Consensus 13 a~~ii~aA~a~a~~----~g~~VtvaVVD~~G~~~a~~Rm-----Dga~~~s~eiA~~KA~t 65 (141)
T COG3193 13 ANKIIAAAVAEAQQ----LGVPVTVAVVDAGGHLVALERM-----DGASPLSAEIAFGKAYT 65 (141)
T ss_pred HHHHHHHHHHHHHH----hCCceEEEEECCCCCEEEEEec-----CCCcccchhHHHHHHHH
Confidence 34456666666664 27999999998 8998865443 46778888888888743
No 52
>TIGR00159 conserved hypothetical protein TIGR00159. These proteins have no detectable global or local homology to any protein of known function. Members are restricted to the bacteria and found broadly in lineages other than the Proteobacteria.
Probab=35.15 E-value=38 Score=27.75 Aligned_cols=30 Identities=37% Similarity=0.511 Sum_probs=20.8
Q ss_pred EEEEEeeCCeEEEEEeCCCcc-----cCCcccchH
Q 029549 34 VGCVILEDGKVIAAGRNRTTE-----TRNATRHAE 63 (191)
Q Consensus 34 vGavIv~~g~Ii~~g~n~~~~-----~~~~~~HAE 63 (191)
=||||+++|+|++.|+---.+ ..-++.|.=
T Consensus 126 DGAvII~~~rI~aA~~~Lpls~~~~~~~lGtRHRA 160 (211)
T TIGR00159 126 DGAVIIRDNKIVAAGSYLPLSEQSISKSLGTRHRA 160 (211)
T ss_pred CcEEEEECCEEEEEEEEecCCCCCCCCccChHHHH
Confidence 599999999999998763221 234666753
No 53
>PLN02182 cytidine deaminase
Probab=35.04 E-value=1.3e+02 Score=26.45 Aligned_cols=60 Identities=20% Similarity=0.220 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHhhcCC-CCcEEEEEee-CCeEEEEEeCCCcccCCcccchHHHHHHHHHH
Q 029549 12 TLAFMDLAIQQAKLALDSL-EVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLD 72 (191)
Q Consensus 12 ~~~~m~~Ai~~A~~a~~~~-~~pvGavIv~-~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~ 72 (191)
.+.....|++.|.+|.... +-|-|.+|.. +|+|. .|+--.+.-.+|+.=.-..||..+..
T Consensus 201 ~~~l~~~Al~AAn~S~APYS~~~SGvAL~~~~G~vy-~G~YaEnAAfNPSL~PlQaALv~~~~ 262 (339)
T PLN02182 201 CSHLKCKALAAANNSFSPYTESPSGVALLDNDGKWY-RGWYIESVASNPSFGPVQAALVDFVA 262 (339)
T ss_pred ccHHHHHHHHHHHhccCCccCCCceEEEEeCCCCEE-EeeehhhcccCCCccHHHHHHHHHHH
Confidence 4566788999999998764 6788887775 89988 66666666678888777777776543
No 54
>PRK04307 putative disulfide oxidoreductase; Provisional
Probab=34.80 E-value=17 Score=29.91 Aligned_cols=12 Identities=33% Similarity=0.877 Sum_probs=10.0
Q ss_pred EecCCChHHHHH
Q 029549 94 YVTCEPCIMCAA 105 (191)
Q Consensus 94 y~T~EPC~mC~~ 105 (191)
+.-++||+||.-
T Consensus 47 vlgL~PC~LCIy 58 (218)
T PRK04307 47 YLYMAPCEQCVY 58 (218)
T ss_pred hcCCCccHHHHH
Confidence 458999999975
No 55
>PF14421 LmjF365940-deam: A distinct subfamily of CDD/CDA-like deaminases
Probab=34.46 E-value=71 Score=25.65 Aligned_cols=42 Identities=26% Similarity=0.326 Sum_probs=31.0
Q ss_pred CCcEEEEEe-e-C-------C-eEEEEEeCCCcccCCcccchHHHHHHHHHH
Q 029549 31 EVPVGCVIL-E-D-------G-KVIAAGRNRTTETRNATRHAEMEAIDVLLD 72 (191)
Q Consensus 31 ~~pvGavIv-~-~-------g-~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~ 72 (191)
+.||=+++. + + + ...-.|.|...+...++.++|.+||-.|+.
T Consensus 36 ~kPVlavLlV~~~~~~~~~~~~~~~~~gvN~EvSmPTGSlCSErNAiG~aLA 87 (193)
T PF14421_consen 36 RKPVLAVLLVDKNHCEVHGDGRPEFVRGVNYEVSMPTGSLCSERNAIGKALA 87 (193)
T ss_pred CCcEEEEEEEeccccccCCCCCccEEEEEEeEEcCCCcchhHHHHHhhhhhh
Confidence 667666554 3 2 3 356689998777777899999999999754
No 56
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=30.66 E-value=62 Score=23.85 Aligned_cols=48 Identities=15% Similarity=0.191 Sum_probs=31.2
Q ss_pred cchHHHHHHHHHHHhhhCCCChhhhhhcCCCcEEE--ecCCChHHHHHHHHHhCC---CeEEEeec
Q 029549 60 RHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLY--VTCEPCIMCAAALSILGI---KEVYYGCA 120 (191)
Q Consensus 60 ~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly--~T~EPC~mC~~ai~~sgi---~rVvy~~~ 120 (191)
.|-|-.++++.... .+.|-.|. =...||+-|-+++.++-- -.|.|..+
T Consensus 49 THTE~ri~~~l~~~-------------~~~Gd~m~I~G~ypPC~~CkG~Mr~~s~~~g~~I~Y~w~ 101 (118)
T PF14427_consen 49 THTEARITRDLPLN-------------QVPGDRMLIDGQYPPCNSCKGKMRRASEKSGATIQYTWP 101 (118)
T ss_pred hhhHhHHHhhcCcc-------------ccCCceEEEeeecCCCchhHHHHHHhhhccCcEEEEecC
Confidence 59999988776322 11233333 378999999999998642 24666543
No 57
>PRK03113 putative disulfide oxidoreductase; Provisional
Probab=29.11 E-value=27 Score=26.60 Aligned_cols=10 Identities=40% Similarity=1.119 Sum_probs=8.8
Q ss_pred cCCChHHHHH
Q 029549 96 TCEPCIMCAA 105 (191)
Q Consensus 96 T~EPC~mC~~ 105 (191)
-++||++|..
T Consensus 33 gl~PC~LCi~ 42 (139)
T PRK03113 33 KFEPCVLCWY 42 (139)
T ss_pred CCCCCHHHHH
Confidence 6899999976
No 58
>KOG2584 consensus Dihydroorotase and related enzymes [Nucleotide transport and metabolism]
Probab=29.04 E-value=80 Score=28.95 Aligned_cols=70 Identities=27% Similarity=0.350 Sum_probs=46.9
Q ss_pred eCCeEEEEEeCCCccc--CCcccch-------HHHHHHHHHHHhhhCCCChhhhhhcCCCcEEEecCCChHHHHHHHHHh
Q 029549 40 EDGKVIAAGRNRTTET--RNATRHA-------EMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSIL 110 (191)
Q Consensus 40 ~~g~Ii~~g~n~~~~~--~~~~~HA-------E~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~T~EPC~mC~~ai~~s 110 (191)
.||.+|+.+.-+.... ..|..|. |..|+..++.-.. -.+|-||+++=---.-+.+|-++
T Consensus 199 Engd~iae~q~~~l~~gitgPEgh~lSRPee~EaEA~~rai~ia~------------~~ncPlyvvhVmsksaa~~Ia~a 266 (522)
T KOG2584|consen 199 ENGDAIAEGQQRLLELGITGPEGHELSRPEELEAEATNRAITIAR------------QANCPLYVVHVMSKSAADAIALA 266 (522)
T ss_pred hcchhhhhhhhHHHHcCCcCcccccccCchhhhHHHHHHHHHHHH------------hcCCCcceEEEeehhHHHHHHHH
Confidence 4888887765543321 1233342 6667777655432 36899999887777788889888
Q ss_pred CC-CeEEEeecC
Q 029549 111 GI-KEVYYGCAN 121 (191)
Q Consensus 111 gi-~rVvy~~~~ 121 (191)
|- .++|||.+.
T Consensus 267 Rk~g~~v~gepi 278 (522)
T KOG2584|consen 267 RKKGRVVFGEPI 278 (522)
T ss_pred HhcCceeecccc
Confidence 86 889999753
No 59
>PF05528 Coronavirus_5: Coronavirus gene 5 protein; InterPro: IPR008458 Infectious bronchitis virus, a member of Coronaviridae family, has a single-stranded positive-sense RNA genome, which is 27 kb in length. Gene 5 contains two (5a and 5b) open reading frames. The function of the 5a and 5b proteins is unknown [].
Probab=28.80 E-value=20 Score=24.32 Aligned_cols=19 Identities=26% Similarity=0.885 Sum_probs=14.0
Q ss_pred CCcEEEe----cCCChHHHHHHH
Q 029549 89 SKCCLYV----TCEPCIMCAAAL 107 (191)
Q Consensus 89 ~~~~ly~----T~EPC~mC~~ai 107 (191)
.+|.-|+ +.|||+-|+...
T Consensus 25 ldcvyflN~aGqaE~Cp~CtsLv 47 (82)
T PF05528_consen 25 LDCVYFLNKAGQAEPCPACTSLV 47 (82)
T ss_pred CceEEeecccCccccCcchhhhh
Confidence 3566666 589999999643
No 60
>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.
Probab=28.69 E-value=1.6e+02 Score=19.70 Aligned_cols=43 Identities=21% Similarity=0.239 Sum_probs=27.2
Q ss_pred CCcEEEEEee-CCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhh
Q 029549 31 EVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQ 75 (191)
Q Consensus 31 ~~pvGavIv~-~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~ 75 (191)
...+|+|+.+ ++.......... ......++|..||..+++...
T Consensus 14 ~~g~g~v~~~~~~~~~~~~~~~~--~~~s~~~aEl~al~~al~~~~ 57 (130)
T cd06222 14 PAGAGVVLRDPGGEVLLSGGLLG--GNTTNNRAELLALIEALELAL 57 (130)
T ss_pred ceEEEEEEEeCCCeEEEeccccC--CCCcHHHHHHHHHHHHHHHHH
Confidence 4567888887 454443322211 245667999999999877653
No 61
>COG4827 Predicted transporter [General function prediction only]
Probab=27.39 E-value=62 Score=26.61 Aligned_cols=24 Identities=25% Similarity=0.542 Sum_probs=19.5
Q ss_pred cCCCcEEEecCCChHHHHHHHHHh
Q 029549 87 KFSKCCLYVTCEPCIMCAAALSIL 110 (191)
Q Consensus 87 ~~~~~~ly~T~EPC~mC~~ai~~s 110 (191)
+.+..+.+.-.-|||-|.+++.-+
T Consensus 101 D~sK~~~~ais~PCPvCl~avavs 124 (239)
T COG4827 101 DVSKHTFLAISMPCPVCLGAVAVS 124 (239)
T ss_pred chhhceeEEEecCCcHHHHHHHHH
Confidence 467888888899999999987643
No 62
>PF06230 DUF1009: Protein of unknown function (DUF1009); InterPro: IPR010415 This is a family of uncharacterised bacterial proteins.
Probab=26.64 E-value=2e+02 Score=23.57 Aligned_cols=42 Identities=26% Similarity=0.389 Sum_probs=28.9
Q ss_pred CCCHhHHHHHHHHHHHHHHhhcCCCCcEE-EEEeeCCeEEEEEeCC
Q 029549 7 EWSPDTLAFMDLAIQQAKLALDSLEVPVG-CVILEDGKVIAAGRNR 51 (191)
Q Consensus 7 ~~~~~~~~~m~~Ai~~A~~a~~~~~~pvG-avIv~~g~Ii~~g~n~ 51 (191)
..|+++..=++.+.+.|+. -+..=+| ||||++|.||+...-+
T Consensus 90 ~p~~~~~~Di~~g~~ia~~---lg~lDiGQ~vVV~~g~VlAVEa~E 132 (214)
T PF06230_consen 90 KPSKEELADIEFGFEIAKA---LGRLDIGQAVVVKDGRVLAVEAIE 132 (214)
T ss_pred CCCHHHHHHHHHHHHHHHH---hcccCCCceEEEECCEEEEEeccc
Confidence 4455555557777777764 3456777 7888999999876543
No 63
>PF02457 DisA_N: DisA bacterial checkpoint controller nucleotide-binding; InterPro: IPR003390 The DisA protein is a bacterial checkpoint protein that dimerises into an octameric complex. The protein consists of three distinct domains. This domain is the first and is a globular, nucleotide-binding region; the next 146-289 residues constitute the DisA-linker family, IPR018906 from INTERPRO that consists of an elongated bundle of three alpha helices (alpha-6, alpha-10, and alpha-11), one side of which carries an additional three helices (alpha7-9), which thus forms a spine like-linker between domains 1 and 3. The C-terminal residues, of domain 3, are represented by family HHH, IPR000445 from INTERPRO the specific DNA-binding domain. The octameric complex thus has structurally linked nucleotide-binding and DNA-binding HhH domains and the nucleotide-binding domains are bound to a cyclic di-adenosine phosphate such that DisA is a specific di-adenylate cyclase. The di-adenylate cyclase activity is strongly suppressed by binding to branched DNA, but not to duplex or single-stranded DNA, suggesting a role for DisA as a monitor of the presence of stalled replication forks or recombination intermediates via DNA structure-modulated c-di-AMP synthesis.; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 2FB5_A.
Probab=26.56 E-value=36 Score=25.25 Aligned_cols=17 Identities=41% Similarity=0.798 Sum_probs=15.3
Q ss_pred EEEEEeeCCeEEEEEeC
Q 029549 34 VGCVILEDGKVIAAGRN 50 (191)
Q Consensus 34 vGavIv~~g~Ii~~g~n 50 (191)
=||||+++|+|++.|.+
T Consensus 56 DGAviI~~~~i~aag~~ 72 (122)
T PF02457_consen 56 DGAVIIDGGRIVAAGAI 72 (122)
T ss_dssp SSEEEEETTCCEEEEEE
T ss_pred CceEEEECCeEEEEEEE
Confidence 59999999999999887
No 64
>PF04805 Pox_E10: E10-like protein conserved region; InterPro: IPR006890 This entry represents a family of probable FAD-linked sulphydryl oxidases found in poxviruses.; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process
Probab=26.53 E-value=49 Score=22.11 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=12.4
Q ss_pred ecCCChHHHHHHHHHhC
Q 029549 95 VTCEPCIMCAAALSILG 111 (191)
Q Consensus 95 ~T~EPC~mC~~ai~~sg 111 (191)
++.=||++|......+=
T Consensus 13 ~~tLPC~~Cr~HA~~ai 29 (70)
T PF04805_consen 13 CSTLPCPECRIHAKEAI 29 (70)
T ss_pred HhcCCCHHHHHHHHHHH
Confidence 35669999998666553
No 65
>PF08186 Wound_ind: Wound-inducible basic protein family; InterPro: IPR012643 This family consists of the wound-inducible basic proteins from plants. The metabolic activities of plants are dramatically altered upon mechanical injury or pathogen attack. A large number of proteins accumulates at wound or infection sites, such as the wound-inducible basic proteins. These proteins are small, 47 amino acids in length, has no signal peptides and are hydrophilic and basic [].
Probab=26.05 E-value=1e+02 Score=18.87 Aligned_cols=10 Identities=50% Similarity=0.896 Sum_probs=7.3
Q ss_pred HHHHHHHHHh
Q 029549 164 VSLFRSFYEQ 173 (191)
Q Consensus 164 ~~l~~~f~~~ 173 (191)
..||+.|++.
T Consensus 7 s~lfrsfl~~ 16 (46)
T PF08186_consen 7 SHLFRSFLQK 16 (46)
T ss_pred cHHHHHHHHh
Confidence 4688888864
No 66
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=25.50 E-value=5.6e+02 Score=23.94 Aligned_cols=89 Identities=17% Similarity=0.104 Sum_probs=57.8
Q ss_pred CCHhHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhc
Q 029549 8 WSPDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEK 87 (191)
Q Consensus 8 ~~~~~~~~m~~Ai~~A~~a~~~~~~pvGavIv~~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~ 87 (191)
.++++..=|..|...++... ...+ |+++||.+|+.|.-+. .-.++-..||.++.+.. ..
T Consensus 393 pt~~e~~Dl~faw~v~K~vk---SNaI--Vvvkd~~~vgIgaGQ~-----sRvd~t~~Ai~rag~~~-----------~~ 451 (513)
T PRK00881 393 PTEQELKDLLFAWKVVKHVK---SNAI--VYAKDGQTVGIGAGQM-----SRVDSARIAIEKAGDAG-----------LD 451 (513)
T ss_pred CCHHHHHHHHHHHHHHHhcC---CCcE--EEEeCCeEEEECCCCc-----chHHHHHHHHHHHHHhc-----------cC
Confidence 44444455666777666543 2334 8889999999988652 33456667777765421 12
Q ss_pred CCCcEEEec-CCChHHHHHHHHHhCCCeEEE
Q 029549 88 FSKCCLYVT-CEPCIMCAAALSILGIKEVYY 117 (191)
Q Consensus 88 ~~~~~ly~T-~EPC~mC~~ai~~sgi~rVvy 117 (191)
+.|+++-.- ..|=+-+...+..+||+-|+-
T Consensus 452 ~~gav~aSDafFPf~Dtie~aa~~Gv~aIiq 482 (513)
T PRK00881 452 LKGAVLASDAFFPFRDGVEAAAKAGITAIIQ 482 (513)
T ss_pred cCCeEEEeeCCCCchhHHHHHHHcCCeEEEe
Confidence 466665432 345588999999999998875
No 67
>PF14428 SCP1201-deam: SCP1.201-like deaminase
Probab=25.33 E-value=68 Score=24.27 Aligned_cols=39 Identities=21% Similarity=0.317 Sum_probs=27.6
Q ss_pred cccchHHHHHHHHHHHhhhCCCChhhhhhcCCCcEEEec-CCChHH---HHHHHHH
Q 029549 58 ATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVT-CEPCIM---CAAALSI 109 (191)
Q Consensus 58 ~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~T-~EPC~m---C~~ai~~ 109 (191)
...|.|..+-..-.+ ...+..+||++ ..||.- |..++-.
T Consensus 67 ~~~HVE~k~Aa~Mr~-------------~g~~~a~vvIN~n~pC~~~~gC~~~l~~ 109 (135)
T PF14428_consen 67 AASHVEGKAAAWMRR-------------NGIKHATVVINPNGPCGGRDGCDQLLPA 109 (135)
T ss_pred chhhhhHHHHHHHHH-------------cCCeEEEEEEeCCCCCCCccCHHHHHHH
Confidence 446999886533322 23578999999 999998 9886544
No 68
>COG1624 Uncharacterized conserved protein [Function unknown]
Probab=23.79 E-value=73 Score=26.70 Aligned_cols=17 Identities=53% Similarity=0.862 Sum_probs=14.4
Q ss_pred EEEEEeeCCeEEEEEeC
Q 029549 34 VGCVILEDGKVIAAGRN 50 (191)
Q Consensus 34 vGavIv~~g~Ii~~g~n 50 (191)
=||+|+++++|++.|.=
T Consensus 173 DGAvII~~~kIvaAg~y 189 (247)
T COG1624 173 DGAVIIRDNKIVAAGRY 189 (247)
T ss_pred cceEEEeCCEEEEEEEE
Confidence 59999998899988764
No 69
>PRK13907 rnhA ribonuclease H; Provisional
Probab=23.43 E-value=2.8e+02 Score=19.79 Aligned_cols=42 Identities=17% Similarity=0.044 Sum_probs=25.3
Q ss_pred CCcEEEEEee-CCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhh
Q 029549 31 EVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQK 76 (191)
Q Consensus 31 ~~pvGavIv~-~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~ 76 (191)
....|.||.+ +|.+...+.-. ...-.+||..|+..+++....
T Consensus 16 ~~G~G~vi~~~~~~~~~~~~~~----~~tn~~AE~~All~aL~~a~~ 58 (128)
T PRK13907 16 PSGAGVFIKGVQPAVQLSLPLG----TMSNHEAEYHALLAALKYCTE 58 (128)
T ss_pred ccEEEEEEEECCeeEEEEeccc----ccCCcHHHHHHHHHHHHHHHh
Confidence 3446777766 45544333221 223468999999988776543
No 70
>KOG1939 consensus Oxoprolinase [Amino acid transport and metabolism]
Probab=21.87 E-value=2.8e+02 Score=27.69 Aligned_cols=74 Identities=19% Similarity=0.355 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHhhcCC-------CCcEEEEEee-CCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhh
Q 029549 12 TLAFMDLAIQQAKLALDSL-------EVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSE 83 (191)
Q Consensus 12 ~~~~m~~Ai~~A~~a~~~~-------~~pvGavIv~-~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~ 83 (191)
-.+||..|-++.+.-+... ..-+.|++++ +|.+|+-+-+- ....-+-..++++-.+.|.
T Consensus 734 s~RFMsIAeQMGr~LqrTsiStNiKERLDfSCALF~pdGgLVANAPHv-----PvhLGsMqt~V~~Q~k~~~-------- 800 (1247)
T KOG1939|consen 734 SHRFMSIAEQMGRVLQRTSISTNIKERLDFSCALFSPDGGLVANAPHV-----PVHLGSMQTTVKWQLKHWG-------- 800 (1247)
T ss_pred hhHHHHHHHHHHHHHhhhhcccchhhhccceeEeEcCCCCeeccCCCC-----ceeecchHHHHHHHHHHhc--------
Confidence 4689999998887543221 4459999998 99999655442 2233455667776666654
Q ss_pred hhhcCCCcEEEecCCCh
Q 029549 84 IAEKFSKCCLYVTCEPC 100 (191)
Q Consensus 84 ~~~~~~~~~ly~T~EPC 100 (191)
..++.-++++|--||
T Consensus 801 --~kLk~GDVlltNHP~ 815 (1247)
T KOG1939|consen 801 --EKLKPGDVLLTNHPS 815 (1247)
T ss_pred --cCCCCCcEEEecCCC
Confidence 346666777777776
No 71
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=21.83 E-value=3.3e+02 Score=19.91 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCcEEEEEee-CCeEEEEEeCCCcccCCcccchHHHHHHHHH
Q 029549 13 LAFMDLAIQQAKLALDSLEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLL 71 (191)
Q Consensus 13 ~~~m~~Ai~~A~~a~~~~~~pvGavIv~-~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~ 71 (191)
.+.+..|++.|++. +.++.-+||+ +|.++..-.- .+...|..-.|.+++.
T Consensus 9 ~~l~~~a~~~a~~~----g~~v~iaVvd~~G~~~~~~r~-----dga~~~~~~~a~~KA~ 59 (132)
T PF03928_consen 9 WKLGDAAVEEARER----GLPVSIAVVDAGGHLLAFARM-----DGAPPDSIDWAQRKAY 59 (132)
T ss_dssp HHHHHHHHHHHHHT----T---EEEEEETTS-EEEEEE------TTS-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----CCCeEEEEEECCCCEEEEEec-----CCCcccHHHHHHHHHH
Confidence 44566667776642 4667777787 8999876554 3456777777887764
No 72
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=21.48 E-value=1.2e+02 Score=25.14 Aligned_cols=49 Identities=33% Similarity=0.417 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhcCCCCcEEEEEee-CCeEEEEEeCCCcc--cCCcccchHHH
Q 029549 16 MDLAIQQAKLALDSLEVPVGCVILE-DGKVIAAGRNRTTE--TRNATRHAEME 65 (191)
Q Consensus 16 m~~Ai~~A~~a~~~~~~pvGavIv~-~g~Ii~~g~n~~~~--~~~~~~HAE~~ 65 (191)
|-.+++-+.... ..+.-+-|||+. +|+|.+.|+|--.- ......|||+.
T Consensus 60 M~~~Lq~~ll~d-~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~haevF 111 (287)
T KOG1682|consen 60 MMCALQDALLKD-KDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAEVF 111 (287)
T ss_pred HHHHHHHHHhhc-ccccceeEEEEecCCccccccccHHHhhcCccchHHHHHH
Confidence 434555555432 346778888886 99999999994222 23346799864
No 73
>PRK01749 disulfide bond formation protein B; Provisional
Probab=20.36 E-value=46 Score=26.21 Aligned_cols=12 Identities=33% Similarity=0.941 Sum_probs=9.7
Q ss_pred EecCCChHHHHH
Q 029549 94 YVTCEPCIMCAA 105 (191)
Q Consensus 94 y~T~EPC~mC~~ 105 (191)
+.-++||++|..
T Consensus 35 ~lgl~PC~LCi~ 46 (176)
T PRK01749 35 VMLLKPCVMCIY 46 (176)
T ss_pred HcCCCCcHhHHH
Confidence 447899999976
Done!