Query 029549
Match_columns 191
No_of_seqs 155 out of 1605
Neff 7.4
Searched_HMMs 29240
Date Tue Mar 26 00:19:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029549.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029549hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dh1_A TRNA-specific adenosine 100.0 1E-46 3.5E-51 300.6 16.1 163 10-184 24-188 (189)
2 2nx8_A TRNA-specific adenosine 100.0 1.1E-43 3.6E-48 281.2 14.3 151 10-178 14-164 (179)
3 1z3a_A TRNA-specific adenosine 100.0 5.8E-43 2E-47 274.5 17.2 153 8-178 5-157 (168)
4 2b3j_A TRNA adenosine deaminas 100.0 1.4E-42 4.8E-47 270.2 15.4 148 11-176 6-153 (159)
5 2a8n_A Cytidine and deoxycytid 100.0 1.8E-41 6.2E-46 259.9 14.1 142 11-170 3-144 (144)
6 2g84_A Cytidine and deoxycytid 100.0 2.3E-41 7.7E-46 271.6 15.2 159 7-174 23-183 (197)
7 1wwr_A TRNA adenosine deaminas 100.0 5.4E-41 1.9E-45 263.8 14.5 146 11-175 22-167 (171)
8 1wkq_A Guanine deaminase; doma 100.0 1.6E-41 5.5E-46 265.1 9.9 147 11-176 10-161 (164)
9 1p6o_A Cytosine deaminase; hyd 100.0 2.1E-39 7E-44 252.7 10.4 143 5-174 7-151 (161)
10 2b3z_A Riboflavin biosynthesis 100.0 4.1E-35 1.4E-39 255.5 11.4 139 10-179 12-158 (373)
11 2hxv_A Diaminohydroxyphosphori 100.0 2.5E-34 8.5E-39 249.5 12.4 138 13-179 15-160 (360)
12 2g6v_A Riboflavin biosynthesis 100.0 1.4E-34 4.9E-39 254.2 9.6 140 9-179 27-174 (402)
13 1vq2_A DCMP deaminase, deoxycy 100.0 1.9E-33 6.6E-38 224.8 9.3 127 12-166 3-182 (193)
14 2hvw_A Deoxycytidylate deamina 100.0 1.8E-33 6.2E-38 223.2 8.7 124 10-161 40-178 (184)
15 2w4l_A DCMP deaminse, deoxycyt 100.0 2.9E-34 9.8E-39 226.9 1.8 142 3-173 4-166 (178)
16 3g8q_A Predicted RNA-binding p 99.9 7.9E-26 2.7E-30 182.7 7.2 79 21-122 11-89 (278)
17 2nyt_A Probable C->U-editing e 99.8 5.2E-20 1.8E-24 146.3 11.5 118 31-172 32-159 (190)
18 1uwz_A Cytidine deaminase; CDD 99.7 2.8E-17 9.6E-22 124.3 10.7 89 12-111 3-97 (136)
19 2z3g_A Blasticidin-S deaminase 99.7 5.7E-16 1.9E-20 116.2 12.4 94 7-113 2-101 (130)
20 2fr5_A Cytidine deaminase; tet 99.7 7.1E-16 2.4E-20 117.8 10.8 91 10-111 13-110 (146)
21 3b8f_A Putative blasticidin S 99.4 8.1E-13 2.8E-17 100.4 10.1 96 11-118 3-107 (142)
22 3r2n_A Cytidine deaminase; str 99.4 2.2E-12 7.6E-17 97.4 9.3 101 5-118 3-111 (138)
23 1r5t_A Cytidine deaminase; zin 99.3 6.4E-12 2.2E-16 95.4 10.3 92 10-111 9-107 (142)
24 2d30_A Cytidine deaminase; pur 99.3 1.5E-11 5.2E-16 93.2 10.4 89 12-111 12-106 (141)
25 3mpz_A Cytidine deaminase; ssg 99.1 2.8E-10 9.6E-15 86.8 8.5 96 11-117 24-125 (150)
26 1ctt_A Cytidine deaminase; hyd 99.1 8.3E-10 2.9E-14 92.9 11.2 94 11-113 187-286 (294)
27 3oj6_A Blasticidin-S deaminase 98.9 1.7E-08 5.9E-13 77.6 11.9 94 5-112 24-124 (158)
28 1ctt_A Cytidine deaminase; hyd 98.9 4.8E-09 1.6E-13 88.3 8.8 87 12-111 49-140 (294)
29 3dmo_A Cytidine deaminase; str 98.8 2.2E-08 7.6E-13 75.3 10.0 92 11-111 10-107 (138)
30 4eg2_A Cytidine deaminase; UMP 98.3 2.4E-06 8.2E-11 71.7 8.6 79 21-112 62-144 (298)
31 4eg2_A Cytidine deaminase; UMP 98.1 1.2E-05 4E-10 67.6 9.6 90 13-111 193-288 (298)
32 3v4k_A DNA DC->DU-editing enzy 94.2 0.043 1.5E-06 43.4 4.2 96 58-174 77-177 (203)
33 3vow_A Probable DNA DC->DU-edi 92.9 0.062 2.1E-06 42.1 2.9 97 56-172 61-162 (190)
34 3bh1_A UPF0371 protein DIP2346 47.4 37 0.0013 29.8 6.0 56 9-75 342-397 (507)
35 2ehg_A Ribonuclease HI; RNAse 35.6 1.1E+02 0.0039 21.4 6.5 41 35-75 22-64 (149)
36 2fb5_A Hypothetical membrane s 33.5 22 0.00077 27.8 2.3 18 34-51 135-152 (205)
37 3vdp_A Recombination protein R 24.8 39 0.0013 26.6 2.3 20 86-105 69-88 (212)
38 3p1g_A Xenotropic murine leuke 24.4 1.4E+02 0.0048 21.9 5.3 55 34-103 41-95 (165)
39 1vdd_A Recombination protein R 23.1 44 0.0015 26.5 2.4 20 86-105 55-74 (228)
40 3mtw_A L-arginine carboxypepti 21.9 66 0.0022 24.8 3.2 18 34-51 22-39 (403)
41 3u3g_D Ribonuclease H, RNAse H 21.5 1.2E+02 0.0042 20.6 4.3 41 33-75 20-61 (140)
No 1
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=100.00 E-value=1e-46 Score=300.59 Aligned_cols=163 Identities=50% Similarity=0.858 Sum_probs=132.2
Q ss_pred HhHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhcCC
Q 029549 10 PDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFS 89 (191)
Q Consensus 10 ~~~~~~m~~Ai~~A~~a~~~~~~pvGavIv~~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~ 89 (191)
.+|+.||++|+++|+++...+++|||||||+||+||+.|+|.+....+++.|||++||+++.+.....+.+. .+.+.
T Consensus 24 ~~d~~~M~~Al~lA~~a~~~~~~pVGAVIV~~g~IIa~G~N~~~~~~~~t~HAEi~AI~~a~~~~~~~~~~~---~~~l~ 100 (189)
T 3dh1_A 24 EETEKWMEEAMHMAKEALENTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQSGKSP---SEVFE 100 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHHHHCCCH---HHHHT
T ss_pred HHHHHHHHHHHHHHHHhhhCCCCCEEEEEEECCEEEEEEeCCCCccCCCcCcHHHHHHHHHHHHHhhcCccc---ccccC
Confidence 468899999999999999889999999999999999999998877789999999999999987654333221 13578
Q ss_pred CcEEEecCCChHHHHHHHHHhCCCeEEEeecCCCCcccccccccccccccccccccccCCCC--eEEEccCCHHHHHHHH
Q 029549 90 KCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKG--FKCTGGVMASEAVSLF 167 (191)
Q Consensus 90 ~~~ly~T~EPC~mC~~ai~~sgi~rVvy~~~~~~~g~~g~~~~l~~~~~~~~~~~~~l~~~~--i~V~~gvl~~e~~~l~ 167 (191)
++|||||+|||+||++||+|+||+||||+..+|+.|+.|+.+.++. ..+...| ++|++|+|++||.+|+
T Consensus 101 g~tLYvTlEPC~mCa~Aii~agI~rVVyg~~~p~~gg~g~~~~~~~---------~~l~~~gh~ieV~~Gvl~~e~~~Ll 171 (189)
T 3dh1_A 101 HTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIAS---------ADLPNTGRPFQCIPGYRAEEAVEML 171 (189)
T ss_dssp TEEEEEEECCBHHHHHHHHHHTCCEEEEEECCTTTBTBTTSCBCTT---------CCCTTSSCCCEEECCTTHHHHHHHH
T ss_pred CeEEEEeCCChHHHHHHHHHhCCCEEEEEecCCCcccccccccchh---------hHHHHcCCCeEEEeCccHHHHHHHH
Confidence 9999999999999999999999999999999999999887766653 2233344 9999999999999999
Q ss_pred HHHHHhcCCCCCCCCCC
Q 029549 168 RSFYEQGNPNAPKPHRP 184 (191)
Q Consensus 168 ~~f~~~~~~~~p~~~~~ 184 (191)
+.||++.++++|.++||
T Consensus 172 ~~Ff~~~~~~~P~~~~k 188 (189)
T 3dh1_A 172 KTFYKQENPNAPKSKVR 188 (189)
T ss_dssp HHHTCC-----------
T ss_pred HHHHHHhcCCCCCCCCC
Confidence 99999999999999875
No 2
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=100.00 E-value=1.1e-43 Score=281.16 Aligned_cols=151 Identities=31% Similarity=0.620 Sum_probs=134.1
Q ss_pred HhHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhcCC
Q 029549 10 PDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFS 89 (191)
Q Consensus 10 ~~~~~~m~~Ai~~A~~a~~~~~~pvGavIv~~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~ 89 (191)
++|+.||++|+++|+++...+++|||||||+||+||+.|+|.+....+++.|||++||+++.+++.. +.+.
T Consensus 14 ~~d~~~M~~Al~~A~~a~~~g~~pVGAVIV~~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~~~---------~~l~ 84 (179)
T 2nx8_A 14 EEQTYFMQEALKESEKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGN---------WRLL 84 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTS---------SCCT
T ss_pred HHHHHHHHHHHHHHHhccccCCCCEEEEEEECCEEEEEEECCCCCcCCCccCHHHHHHHHHHHHcCC---------Cccc
Confidence 5789999999999999998889999999999999999999998888899999999999999887653 4589
Q ss_pred CcEEEecCCChHHHHHHHHHhCCCeEEEeecCCCCcccccccccccccccccccccccCCCCeEEEccCCHHHHHHHHHH
Q 029549 90 KCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRS 169 (191)
Q Consensus 90 ~~~ly~T~EPC~mC~~ai~~sgi~rVvy~~~~~~~g~~g~~~~l~~~~~~~~~~~~~l~~~~i~V~~gvl~~e~~~l~~~ 169 (191)
++|||||+|||+||++||+|+||+||||+..+++.|+.|+.+.++..+. .+++++|.+|+|++||.+|++.
T Consensus 85 g~tlYvTlEPC~mCa~ai~~agI~rVv~g~~d~~~g~~g~~~~~l~~~~---------~~~~~~V~~gvl~~e~~~l~~~ 155 (179)
T 2nx8_A 85 DTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGVDSLYQILTDER---------LNHRVQVERGLLAADCANIMQT 155 (179)
T ss_dssp TEEEEEEECCBHHHHHHHHHTTCCEEEEEECCTTTBTTTTSCCGGGCTT---------TTCCCEEEECTTHHHHHHHHHH
T ss_pred ceEEEECCCCcHHHHHHHHHhCCCeEEEEEeCCCCcccccHHHHhhccc---------cCCCcEEEcCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999998887655543221 1468999999999999999999
Q ss_pred HHHhcCCCC
Q 029549 170 FYEQGNPNA 178 (191)
Q Consensus 170 f~~~~~~~~ 178 (191)
||++.+.+.
T Consensus 156 f~~~~r~~~ 164 (179)
T 2nx8_A 156 FFRQGRERK 164 (179)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 999766443
No 3
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=100.00 E-value=5.8e-43 Score=274.46 Aligned_cols=153 Identities=31% Similarity=0.458 Sum_probs=134.6
Q ss_pred CCHhHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhc
Q 029549 8 WSPDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEK 87 (191)
Q Consensus 8 ~~~~~~~~m~~Ai~~A~~a~~~~~~pvGavIv~~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~ 87 (191)
.+.+|+.||++|+++|+++...+++|||||||+||+||+.|+|......+++.|||++||+++.+.+.. +.
T Consensus 5 ~~~~d~~~M~~A~~~A~~a~~~~~~pVGAviV~~g~Ii~~G~N~~~~~~d~t~HAE~~Ai~~a~~~~~~---------~~ 75 (168)
T 1z3a_A 5 VEFSHEYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQN---------YR 75 (168)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTS---------SC
T ss_pred cchHHHHHHHHHHHHHHHhhhcCCCcEEEEEEECCEEEEEEEcccccCCCcchhHHHHHHHHHHHHcCC---------Cc
Confidence 344689999999999999998889999999999999999999998888899999999999999887643 45
Q ss_pred CCCcEEEecCCChHHHHHHHHHhCCCeEEEeecCCCCcccccccccccccccccccccccCCCCeEEEccCCHHHHHHHH
Q 029549 88 FSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLF 167 (191)
Q Consensus 88 ~~~~~ly~T~EPC~mC~~ai~~sgi~rVvy~~~~~~~g~~g~~~~l~~~~~~~~~~~~~l~~~~i~V~~gvl~~e~~~l~ 167 (191)
+.++|||||+|||+||+++|+|+||+||||+.++|+.|+.|+.+.++..+. .+++++|.+|+|++||.+|+
T Consensus 76 l~~~tlYvTlEPC~mC~~ai~~agi~rVv~g~~d~~~g~~g~~~~~l~~~~---------~~~~~~v~~gvl~~e~~~l~ 146 (168)
T 1z3a_A 76 LIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPG---------MNHRVEITEGILADECAALL 146 (168)
T ss_dssp CTTCEEEEEECCCHHHHHHHHHHTCSEEEEEECCTTTCTBTTSCBCTTCTT---------CSSCCEEECCTTHHHHHHHH
T ss_pred ccccEEEEcCCCcHHHHHHHHHHCcCEEEEEecCCCccccchhHHHhhccc---------cCCCcEEEcCCCHHHHHHHH
Confidence 789999999999999999999999999999999999998887655543321 24689999999999999999
Q ss_pred HHHHHhcCCCC
Q 029549 168 RSFYEQGNPNA 178 (191)
Q Consensus 168 ~~f~~~~~~~~ 178 (191)
+.||++.+.+.
T Consensus 147 ~~f~~~~r~~~ 157 (168)
T 1z3a_A 147 SDFFRMRRQEI 157 (168)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHhcc
Confidence 99999876543
No 4
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=100.00 E-value=1.4e-42 Score=270.15 Aligned_cols=148 Identities=32% Similarity=0.508 Sum_probs=131.9
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhcCCC
Q 029549 11 DTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSK 90 (191)
Q Consensus 11 ~~~~~m~~Ai~~A~~a~~~~~~pvGavIv~~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~ 90 (191)
+|++||++|+++|+++...+++|||||||+||+||+.|+|.++...+++.|||++||+++.+.+.. +.+.+
T Consensus 6 ~d~~~m~~A~~~A~~a~~~~~~pVGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~---------~~l~~ 76 (159)
T 2b3j_A 6 NDIYFMTLAIEEAKKAAQLGEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGS---------WRLEG 76 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTS---------SCCTT
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCEEEEEEECCEEEEEEECCCCCCCCCccCHHHHHHHHHHHHcCC---------CCcce
Confidence 688999999999999998889999999999999999999998877899999999999999887653 45889
Q ss_pred cEEEecCCChHHHHHHHHHhCCCeEEEeecCCCCcccccccccccccccccccccccCCCCeEEEccCCHHHHHHHHHHH
Q 029549 91 CCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSF 170 (191)
Q Consensus 91 ~~ly~T~EPC~mC~~ai~~sgi~rVvy~~~~~~~g~~g~~~~l~~~~~~~~~~~~~l~~~~i~V~~gvl~~e~~~l~~~f 170 (191)
+|||+|+|||+||+++|+|+||+||||+.++++.++.|+.+.++..+. .+++++|.+|+|++||.+||+.|
T Consensus 77 ~tlyvT~EPC~mC~~ai~~agi~rVv~~~~~~~~~~~g~~~~~l~~~~---------~~~~~~v~~gvl~~e~~~l~~~f 147 (159)
T 2b3j_A 77 CTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSN---------FNHRAIVDKGVLKEACSTLLTTF 147 (159)
T ss_dssp EEEEEEECCCHHHHHHHHHTTCSEEEEEECCTTTCTBTTSCBTTSCTT---------SSCCCEEECCTTHHHHHHHHHHH
T ss_pred eEEEECCCCcHHHHHHHHHhCCCeEEEEeeCCCcccccHHHHHHhccc---------cCCCCEEEcCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999998886555543321 24789999999999999999999
Q ss_pred HHhcCC
Q 029549 171 YEQGNP 176 (191)
Q Consensus 171 ~~~~~~ 176 (191)
|.+.+.
T Consensus 148 ~~~~r~ 153 (159)
T 2b3j_A 148 FKNLRA 153 (159)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 997653
No 5
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=100.00 E-value=1.8e-41 Score=259.86 Aligned_cols=142 Identities=36% Similarity=0.580 Sum_probs=114.9
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhcCCC
Q 029549 11 DTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSK 90 (191)
Q Consensus 11 ~~~~~m~~Ai~~A~~a~~~~~~pvGavIv~~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~ 90 (191)
+|+.||++|+++|+++...+++|||||||+||+||++|+|..+...+++.|||++||+++.++++. +.+.+
T Consensus 3 ~d~~~m~~A~~~A~~a~~~~~~~VGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~---------~~~~~ 73 (144)
T 2a8n_A 3 ERTHFMELALVEARSAGERDEVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQ---------ERLPG 73 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTC---------SCCTT
T ss_pred hHHHHHHHHHHHHHHhhcCCCCCEEEEEEECCEEEEEEECCCCCCCCCcCCHHHHHHHHHHHHcCC---------CccCC
Confidence 578999999999999998889999999999999999999998888899999999999999887653 45889
Q ss_pred cEEEecCCChHHHHHHHHHhCCCeEEEeecCCCCcccccccccccccccccccccccCCCCeEEEccCCHHHHHHHHHHH
Q 029549 91 CCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSF 170 (191)
Q Consensus 91 ~~ly~T~EPC~mC~~ai~~sgi~rVvy~~~~~~~g~~g~~~~l~~~~~~~~~~~~~l~~~~i~V~~gvl~~e~~~l~~~f 170 (191)
+|||+|+|||+||+++|+|+||+||||+.++++.++.|+.+.++..+. .+++++|.+|++++||.+||+.|
T Consensus 74 ~tly~T~ePC~mC~~ai~~~~i~rvv~~~~~~~~~~~g~~~~~~~~~~---------~~~~~~v~~gvl~~e~~~l~~~f 144 (144)
T 2a8n_A 74 ADLYVTLEPCTMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQPT---------CHHAPDVYSGLAESESAEILRQF 144 (144)
T ss_dssp CEEEEEECCBHHHHHHHHHTTCSEEEEEECCTTTBCSSSTTCGGGSTT---------CCCCCEEEEC-------------
T ss_pred eEEEECCCChHHHHHHHHHHCCCEEEEeecCCCccccchHHHHHhccc---------cCCCcEEEeCCCHHHHHHHHhcC
Confidence 999999999999999999999999999999999998886555543221 24789999999999999999987
No 6
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=100.00 E-value=2.3e-41 Score=271.60 Aligned_cols=159 Identities=23% Similarity=0.382 Sum_probs=131.9
Q ss_pred CCCHhHHHHHHHHHHHHHHhhcCCCCcEEEEEee-C-CeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhh
Q 029549 7 EWSPDTLAFMDLAIQQAKLALDSLEVPVGCVILE-D-GKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEI 84 (191)
Q Consensus 7 ~~~~~~~~~m~~Ai~~A~~a~~~~~~pvGavIv~-~-g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~ 84 (191)
+..+.|++||++|+++|+++...++.|||||||+ | |+||+.|+|++....+++.|||++||+++.+++.+..++.
T Consensus 23 ~~~~~d~~~M~~Al~~A~~a~~~~~~PvGAVIV~~~~g~Iia~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~L~~--- 99 (197)
T 2g84_A 23 RVLAAPEARMGYVLELVRANIAADGGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAKLDTHDLSA--- 99 (197)
T ss_dssp CBCCSHHHHHHHHHHHHHHHHHTTCCSCEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHHHHHHHTCSCTTC---
T ss_pred cCCHHHHHHHHHHHHHHHhhhhcCCCCEEEEEEEcCCCEEEEEEECCCCccCCCccCHHHHHHHHHHHHcCCccccc---
Confidence 3456789999999999999996668999999997 8 9999999999888899999999999999988765433221
Q ss_pred hhcCCCcEEEecCCChHHHHHHHHHhCCCeEEEeecCCCCcccccccccccccccccccccccCCCCeEEEccCCHHHHH
Q 029549 85 AEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAV 164 (191)
Q Consensus 85 ~~~~~~~~ly~T~EPC~mC~~ai~~sgi~rVvy~~~~~~~g~~g~~~~l~~~~~~~~~~~~~l~~~~i~V~~gvl~~e~~ 164 (191)
..++++|||||+|||+||++||+|+||+||||+..+++.++.| +.....+ ..+...+++++++|++|+|++||.
T Consensus 100 -~~~~g~tlYvTlEPC~mCa~Aii~agI~rVv~g~~d~~~~~~G--~~~~~~~---~~~~~~l~~~~i~V~~gvl~~e~~ 173 (197)
T 2g84_A 100 -DGLPACELVTSAEPCVMCFGAVIWSGVRSLVCAARSDDVEAIG--FDEGPRP---ENWMGGLEARGITVTTGLLRDAAC 173 (197)
T ss_dssp -TTSCCEEEEEEECCCHHHHHHHHHHCCSEEEEEECHHHHHHTT--CCCCCCC---TTHHHHHHHTTCEEECCTTHHHHH
T ss_pred -cCcCCEEEEEeCCCCHHHHHHHHHhCcCEEEEEecCCCccccC--cccccch---hHHHHHHhcCCCEEEecCCHHHHH
Confidence 1257899999999999999999999999999999999887765 2221111 012345678999999999999999
Q ss_pred HHHHHHHHhc
Q 029549 165 SLFRSFYEQG 174 (191)
Q Consensus 165 ~l~~~f~~~~ 174 (191)
+|++.||.+.
T Consensus 174 ~ll~~f~~~~ 183 (197)
T 2g84_A 174 ALLREYNACN 183 (197)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHcC
Confidence 9999999875
No 7
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=100.00 E-value=5.4e-41 Score=263.79 Aligned_cols=146 Identities=32% Similarity=0.515 Sum_probs=129.9
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhcCCC
Q 029549 11 DTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSK 90 (191)
Q Consensus 11 ~~~~~m~~Ai~~A~~a~~~~~~pvGavIv~~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~ 90 (191)
++++||++|+++|+++...+++|||||||+||+||+.|+|.++...+++.|||++||+++.+.+.. +.+.+
T Consensus 22 ~~~~~M~~A~~~A~~a~~~~~~pVGAvIV~dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~g~---------~~l~~ 92 (171)
T 1wwr_A 22 GKEYFLKVALREAKRAFEKGEVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNT---------KYLEG 92 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTC---------SCCTT
T ss_pred hHHHHHHHHHHHHHhcccCCCCCEEEEEEECCEEEEEEECCCCccCCcccCHHHHHHHHHHHHcCC---------CccCc
Confidence 468999999999999998889999999999999999999998888899999999999999887653 45889
Q ss_pred cEEEecCCChHHHHHHHHHhCCCeEEEeecCCCCcccccccccccccccccccccccCCCCeEEEccCCHHHHHHHHHHH
Q 029549 91 CCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSF 170 (191)
Q Consensus 91 ~~ly~T~EPC~mC~~ai~~sgi~rVvy~~~~~~~g~~g~~~~l~~~~~~~~~~~~~l~~~~i~V~~gvl~~e~~~l~~~f 170 (191)
+|||+|+|||+||+++|+|+||+||||+.++++.++.|+.+.+...+. .+++++|.. +|++||.+||+.|
T Consensus 93 ~tlYvT~EPC~mC~~ai~~agi~rVv~~~~d~~~g~~g~~~~~l~~~~---------~~~~i~V~~-vl~~e~~~ll~~f 162 (171)
T 1wwr_A 93 CELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPT---------LNHRVKWEY-YPLEEASELLSEF 162 (171)
T ss_dssp EEEEESSCCBHHHHHHHHHTTCSEEEESSCCTTTBTTTTSCCGGGCTT---------CSSCCEEEE-CCCHHHHHHHHHH
T ss_pred eEEEECCCChHHHHHHHHHHCCCEEEEEecCCCccccchHHHHHhccc---------cCCCcEEEE-ecHHHHHHHHHHH
Confidence 999999999999999999999999999999999998886555543221 257899998 9999999999999
Q ss_pred HHhcC
Q 029549 171 YEQGN 175 (191)
Q Consensus 171 ~~~~~ 175 (191)
|++.+
T Consensus 163 ~~~~r 167 (171)
T 1wwr_A 163 FKKLR 167 (171)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98765
No 8
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=100.00 E-value=1.6e-41 Score=265.14 Aligned_cols=147 Identities=27% Similarity=0.423 Sum_probs=127.1
Q ss_pred hHHHHHHHHHHHHHHhhcCC-CCcEEEEEeeCCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhcCC
Q 029549 11 DTLAFMDLAIQQAKLALDSL-EVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFS 89 (191)
Q Consensus 11 ~~~~~m~~Ai~~A~~a~~~~-~~pvGavIv~~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~ 89 (191)
.|+.||++|+++|+++...+ ++|||||||+||+||++|+|.+....+++.|||++||+++.++++. +.+.
T Consensus 10 ~~~~~M~~Al~~A~~a~~~g~~~pVGAVIV~~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~a~~~~~~---------~~l~ 80 (164)
T 1wkq_A 10 NHETFLKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGA---------YQLD 80 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSSSSCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTS---------SSCT
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCEEEEEEecCCcCCCCcccCHHHHHHHHHHHHcCC---------CCcC
Confidence 47889999999999999888 9999999999999999999998877899999999999999887653 4589
Q ss_pred CcEEEecCCChHHHHHHHHHhCCCeEEEeecCCCCcccc----cccccccccccccccccccCCCCeEEEccCCHHHHHH
Q 029549 90 KCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCG----SILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVS 165 (191)
Q Consensus 90 ~~~ly~T~EPC~mC~~ai~~sgi~rVvy~~~~~~~g~~g----~~~~l~~~~~~~~~~~~~l~~~~i~V~~gvl~~e~~~ 165 (191)
++|||||+|||+||+++|+|+||+||||+.++++.|+.| +.+.+.. ..+.+++++| .|++++||.+
T Consensus 81 g~tlYvT~EPC~mCa~ai~~agI~rVv~g~~~~~~~~~gf~~~~~~~~~~---------~~~~~~~~~v-~gv~~~e~~~ 150 (164)
T 1wkq_A 81 DCILYTSCEPCPMCLGAIYWARPKAVFYAAEHTDAAEAGFDDSFIYKEID---------KPAEERTIPF-YQVTLTEHLS 150 (164)
T ss_dssp TEEEEEEECCCHHHHHHHHHHCCSEEEEEECHHHHHHTTCSHHHHHHHHT---------SCGGGSSSCE-EECCCTTTTH
T ss_pred ceEEEEeCCChHHHHHHHHHHCCCEEEEEEcCCCccccCcchHHHHHHhc---------chhhcCCeEE-EecCHHHHHH
Confidence 999999999999999999999999999999999888777 3333322 1223567777 5799999999
Q ss_pred HHHHHHHhcCC
Q 029549 166 LFRSFYEQGNP 176 (191)
Q Consensus 166 l~~~f~~~~~~ 176 (191)
||+.||++.+.
T Consensus 151 ll~~f~~~~~~ 161 (164)
T 1wkq_A 151 PFQAWRNFANK 161 (164)
T ss_dssp HHHHHHHCTTC
T ss_pred HHHHHHhccCC
Confidence 99999987654
No 9
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=100.00 E-value=2.1e-39 Score=252.71 Aligned_cols=143 Identities=24% Similarity=0.369 Sum_probs=123.4
Q ss_pred CCCCCHhHHHHHHHHHHHHHHhhcCCCCcEEEEEe--eCCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChh
Q 029549 5 GEEWSPDTLAFMDLAIQQAKLALDSLEVPVGCVIL--EDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQS 82 (191)
Q Consensus 5 ~~~~~~~~~~~m~~Ai~~A~~a~~~~~~pvGavIv--~~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~ 82 (191)
..+.+.+|++||++|+++|+++...+++||||||| +||+||+.|+|.++...+++.|||++||+++.+..
T Consensus 7 ~~m~~~~d~~~M~~A~~~A~~a~~~~~~pVGAviVd~~~g~Ii~~G~N~~~~~~~~t~HAE~~Ai~~a~~~~-------- 78 (161)
T 1p6o_A 7 GGMASKWDQKGMDIAYEEAALGYKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRLE-------- 78 (161)
T ss_dssp TTCCCTTHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTTCCEEEEEECCHHHHTCSSCCHHHHHHHHHCSCC--------
T ss_pred CCCCCHHHHHHHHHHHHHHHhhhccCCCCEEEEEEEecCCEEEEEEECCCCCCCCcccCHHHHHHHHHHHhC--------
Confidence 34556779999999999999999888999999999 69999999999988778999999999999986421
Q ss_pred hhhhcCCCcEEEecCCChHHHHHHHHHhCCCeEEEeecCCCCcccccccccccccccccccccccCCCCeEEEccCCHHH
Q 029549 83 EIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASE 162 (191)
Q Consensus 83 ~~~~~~~~~~ly~T~EPC~mC~~ai~~sgi~rVvy~~~~~~~g~~g~~~~l~~~~~~~~~~~~~l~~~~i~V~~gvl~~e 162 (191)
...+.++|||||+|||+||+++|+|+||+||||+..+++.|. + ...+++++++|.. ++++|
T Consensus 79 --~~~~~~~tlYvT~EPC~mC~~ai~~agi~rVv~g~~~~~~g~-~---------------~~~l~~~gi~v~~-~~~~e 139 (161)
T 1p6o_A 79 --GKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCVVGENVNFKSK-G---------------EKYLQTRGHEVVV-VDDER 139 (161)
T ss_dssp --HHHHTTEEEEEEECCCHHHHHHHHHHTCCEEEEEESSSCCCT-H---------------HHHHHHTTCEEEE-CCCHH
T ss_pred --CccccccccccCCCCCHHHHHHHHHhCCCEEEEEecCCCCcc-H---------------HHHHHhcCCEEEE-ecHHH
Confidence 134689999999999999999999999999999998887541 1 2345678999987 99999
Q ss_pred HHHHHHHHHHhc
Q 029549 163 AVSLFRSFYEQG 174 (191)
Q Consensus 163 ~~~l~~~f~~~~ 174 (191)
|.+|++.||++.
T Consensus 140 ~~~l~~~f~~~~ 151 (161)
T 1p6o_A 140 CKKIMKQFIDER 151 (161)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999999864
No 10
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=100.00 E-value=4.1e-35 Score=255.45 Aligned_cols=139 Identities=26% Similarity=0.381 Sum_probs=121.2
Q ss_pred HhHHHHHHHHHHHHHHhhc--CCCCcEEEEEeeCCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhc
Q 029549 10 PDTLAFMDLAIQQAKLALD--SLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEK 87 (191)
Q Consensus 10 ~~~~~~m~~Ai~~A~~a~~--~~~~pvGavIv~~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~ 87 (191)
+.|++||++|+++|+++.. .+++|||||||+||+||++|+|. ..++.|||++||+++.. .
T Consensus 12 ~~~~~~m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~----~~~~~HAE~~Ai~~a~~--------------~ 73 (373)
T 2b3z_A 12 SMEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHL----KYGEAHAEVHAIHMAGA--------------H 73 (373)
T ss_dssp -CHHHHHHHHHHHHGGGTTSSTTSCCCEEEEESSSSEEEEEECC----STTSCCHHHHHHHHHGG--------------G
T ss_pred chHHHHHHHHHHHHHhhCcccCCCCcEEEEEEECCEEEEEEeCC----CCCCcCHHHHHHHHhhH--------------h
Confidence 4588999999999999974 57999999999999999999998 46899999999999842 3
Q ss_pred CCCcEEEecCCCh------HHHHHHHHHhCCCeEEEeecCCCCcccccccccccccccccccccccCCCCeEEEccCCHH
Q 029549 88 FSKCCLYVTCEPC------IMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMAS 161 (191)
Q Consensus 88 ~~~~~ly~T~EPC------~mC~~ai~~sgi~rVvy~~~~~~~g~~g~~~~l~~~~~~~~~~~~~l~~~~i~V~~gvl~~ 161 (191)
+.++|||||+||| +||+++|+++||+||||+..+|+.+..|+ +...++++||+|..|+|++
T Consensus 74 ~~g~tlyvTlePC~~~G~t~~C~~ai~~agi~rVv~~~~d~~~~~~g~-------------~~~~l~~~gi~v~~g~l~~ 140 (373)
T 2b3z_A 74 AEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGR-------------GISMMKEAGIEVREGILAD 140 (373)
T ss_dssp GTTCEEEESSCCCCCCSSSCCHHHHHHHHTCCEEEESSCCSCTTTTTH-------------HHHHHHTTTCEEEECTTHH
T ss_pred cCCeEEEEeCCCccCcCCChHHHHHHHHhCCCEEEEEecccchhhhhH-------------HHHHHHhCCeEEEeCCccc
Confidence 7899999999999 79999999999999999999888755442 2345678999999999999
Q ss_pred HHHHHHHHHHHhcCCCCC
Q 029549 162 EAVSLFRSFYEQGNPNAP 179 (191)
Q Consensus 162 e~~~l~~~f~~~~~~~~p 179 (191)
||.+|++.||.+.+.+.|
T Consensus 141 e~~~l~~~f~~~~~~~rP 158 (373)
T 2b3z_A 141 QAERLNEKFLHFMRTGLP 158 (373)
T ss_dssp HHHHHTHHHHHHHHHSSC
T ss_pred ccccccceeeeeccccch
Confidence 999999999998765555
No 11
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=100.00 E-value=2.5e-34 Score=249.49 Aligned_cols=138 Identities=30% Similarity=0.425 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHhhcC--CCCcEEEEEeeCCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhcCCC
Q 029549 13 LAFMDLAIQQAKLALDS--LEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSK 90 (191)
Q Consensus 13 ~~~m~~Ai~~A~~a~~~--~~~pvGavIv~~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~ 90 (191)
+.||++|+++|+++... +++|||||||+||+||+.|+|. .+++.|||++||+++.+. +..+.+
T Consensus 15 ~~~m~~al~lA~~~~~~~~~~~~vGaviv~~g~ii~~g~n~----~~~~~HAE~~Ai~~a~~~-----------~~~~~g 79 (360)
T 2hxv_A 15 ETFMKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHP----YFGGPHAERMAIESARKK-----------GEDLRG 79 (360)
T ss_dssp HHHHHHHHHHHHTTTTTSTTSCCCEEEEEETTEEEEEEECC----STTSCCHHHHHHHHHHHT-----------TCCCTT
T ss_pred HHHHHHHHHHHHHhccccCCCCCEEEEEEECCEEEEEEeCC----CCCCcCHHHHHHHHHHhc-----------CCCcCC
Confidence 57899999999998754 7999999999999999999998 468999999999998642 135899
Q ss_pred cEEEecCCCh------HHHHHHHHHhCCCeEEEeecCCCCcccccccccccccccccccccccCCCCeEEEccCCHHHHH
Q 029549 91 CCLYVTCEPC------IMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAV 164 (191)
Q Consensus 91 ~~ly~T~EPC------~mC~~ai~~sgi~rVvy~~~~~~~g~~g~~~~l~~~~~~~~~~~~~l~~~~i~V~~gvl~~e~~ 164 (191)
+|||||+||| +||++||+|+||+||||+..+|+. ..|+ +...++++||+|..|+|++||.
T Consensus 80 ~tlYvTlEPC~h~g~t~~C~~ai~~agi~rVv~~~~d~~~-~~g~-------------g~~~l~~~gi~v~~g~l~~e~~ 145 (360)
T 2hxv_A 80 ATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNP-VSGN-------------GVEKFRNHGIEVIEGVLEEEVK 145 (360)
T ss_dssp CEEEEEECCCCSCSSSCCHHHHHHHHTCCEEEEEECCCCG-GGCC-------------HHHHHHTTTCEEEECTTHHHHH
T ss_pred cEEEEecCcccccCCCHHHHHHHHHhCCCEEEEEecCchh-hhhh-------------HHHHHHhCCcEEEECCccccch
Confidence 9999999999 799999999999999999988875 3331 2345778999999999999999
Q ss_pred HHHHHHHHhcCCCCC
Q 029549 165 SLFRSFYEQGNPNAP 179 (191)
Q Consensus 165 ~l~~~f~~~~~~~~p 179 (191)
+|++.||.+.+.+.|
T Consensus 146 ~l~~~f~~~~~~~rP 160 (360)
T 2hxv_A 146 KLCEFFITYVTKKRP 160 (360)
T ss_dssp HHTHHHHHHHHHSSC
T ss_pred hccceeeeccccchh
Confidence 999999987665554
No 12
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*
Probab=100.00 E-value=1.4e-34 Score=254.22 Aligned_cols=140 Identities=28% Similarity=0.404 Sum_probs=121.3
Q ss_pred CHhHHHHHHHHHHHHHHhhc--CCCCcEEEEEeeCCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhh
Q 029549 9 SPDTLAFMDLAIQQAKLALD--SLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAE 86 (191)
Q Consensus 9 ~~~~~~~m~~Ai~~A~~a~~--~~~~pvGavIv~~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~ 86 (191)
++.|++||++|+++|+++.. .+++|||||||+||+||+.|+|. ..++.|||++||+++.+
T Consensus 27 ~~~d~~~m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~----~~g~~HAE~~Ai~~a~~-------------- 88 (402)
T 2g6v_A 27 QGQDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQ----RAGEPHAEVHALRMAGE-------------- 88 (402)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTCTTSCCCEEEEEETTEEEEEEECC----CTTSCCHHHHHHHHHGG--------------
T ss_pred CHHHHHHHHHHHHHHHhhCccCCCCCCEEEEEEECCEEEEEEeCC----CCCccHHHHHHHHHhhH--------------
Confidence 45789999999999999974 47999999999999999999998 46899999999999842
Q ss_pred cCCCcEEEecCCCh------HHHHHHHHHhCCCeEEEeecCCCCcccccccccccccccccccccccCCCCeEEEccCCH
Q 029549 87 KFSKCCLYVTCEPC------IMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMA 160 (191)
Q Consensus 87 ~~~~~~ly~T~EPC------~mC~~ai~~sgi~rVvy~~~~~~~g~~g~~~~l~~~~~~~~~~~~~l~~~~i~V~~gvl~ 160 (191)
.+.++|||||+||| +||+++|+|+||+||||+..+|+....|. +...|+++||+|..|+|+
T Consensus 89 ~~~g~tlyvt~ePC~h~G~tp~C~~ai~~agi~rVv~~~~~~~~~~~g~-------------g~~~l~~~gi~v~~g~l~ 155 (402)
T 2g6v_A 89 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGR-------------GLYRLQQAGIDVSHGLMM 155 (402)
T ss_dssp GGGSSCEEESSCCC-------CCHHHHHHTTCSCEEESSCCCSCSSSTT-------------HHHHHHHTTCCEEECTTT
T ss_pred hcCCeEEEEeCCCcCCCCCchHHHHHHHHhCCCEEEEEecCCCccccch-------------HHHHHHhCCcEEEeCCcc
Confidence 36899999999999 69999999999999999998887543331 234577899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCC
Q 029549 161 SEAVSLFRSFYEQGNPNAP 179 (191)
Q Consensus 161 ~e~~~l~~~f~~~~~~~~p 179 (191)
+||.+|++.||.+.+.+.|
T Consensus 156 ~e~~~l~~~f~~~~~~~rP 174 (402)
T 2g6v_A 156 SEAEQLNKGFLKRMRTGFP 174 (402)
T ss_dssp THHHHHTHHHHHHHHSSSC
T ss_pred hhhHHHhhhhhhccccccc
Confidence 9999999999998776666
No 13
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Probab=100.00 E-value=1.9e-33 Score=224.82 Aligned_cols=127 Identities=25% Similarity=0.349 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEEeCCCcccC-----------------------------------
Q 029549 12 TLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETR----------------------------------- 56 (191)
Q Consensus 12 ~~~~m~~Ai~~A~~a~~~~~~pvGavIv~~g~Ii~~g~n~~~~~~----------------------------------- 56 (191)
|++||++|+.+|++|. .+++|||||||+||+||++|+|.++...
T Consensus 3 d~~fM~~A~~~A~rs~-~~~~~VGAVIV~dg~Iia~G~N~~~~g~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T 1vq2_A 3 ASTVLQIAYLVSQESK-CCSWKVGAVIEKNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKPKHAIIQGHKPECVSFGST 81 (193)
T ss_dssp HHHHHHHHHHHHTTCC-CSSBCCEEEEEETTEEEEEEECBCCTTSCCHHHHHHHHTCEEEC-------------------
T ss_pred HHHHHHHHHHHHHhcC-CCCCCEEEEEEECCEEEEEEeCCCCCCCCCcchhhcccccccccccccccccccccccccccc
Confidence 7899999999999997 4699999999999999999999987531
Q ss_pred ------------------CcccchHHHHHHHHHHHhhhCCCChhhhhhcCCCcEEEecCCChHHHHHHHHHhCCCeEEEe
Q 029549 57 ------------------NATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYG 118 (191)
Q Consensus 57 ------------------~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~T~EPC~mC~~ai~~sgi~rVvy~ 118 (191)
+++.|||++||.++.+.. ..+.++|||||+|||+||+++|+++||+||||+
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~~HAE~~AI~~a~~~g-----------~~~~g~tLYvT~ePC~~Ca~aIi~aGI~rVvy~ 150 (193)
T 1vq2_A 82 DRFVLAKEHRSAHSEWSSKNEIHAELNAILFAAENG-----------SSIEGATMYVTLSPCPDCAKAIAQSGIKKLVYC 150 (193)
T ss_dssp -CEEECGGGHHHHHHHHHHHCBCHHHHHHHHHHHHT-----------CCCTTCEEEEEECCCHHHHHHHHHHTCCEEEEE
T ss_pred cccccchhhccccccccCCCCCCHHHHHHHHHHhcC-----------CCcCCeEEEEeCCCcHHHHHHHHHhCCCEEEEe
Confidence 247899999999997652 347899999999999999999999999999999
Q ss_pred ecCCCCcccccccccccccccccccccccCCCCeEEEccCCHHHHHHH
Q 029549 119 CANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSL 166 (191)
Q Consensus 119 ~~~~~~g~~g~~~~l~~~~~~~~~~~~~l~~~~i~V~~gvl~~e~~~l 166 (191)
.++++.++.+ ...|+++||+|.. +..+++.++
T Consensus 151 ~~~~~~~~~~---------------~~~l~~aGI~v~~-~~~~~~~~~ 182 (193)
T 1vq2_A 151 ETYDKNKPGW---------------DDILRNAGIEVFN-VPKKNLNKL 182 (193)
T ss_dssp ECCTTCCTTT---------------THHHHHTTCEEEE-CCGGGCCSS
T ss_pred cCCCCcchHH---------------HHHHHHCCCEEEE-eCHHHHHHh
Confidence 8888765321 2467789999987 766665543
No 14
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*
Probab=100.00 E-value=1.8e-33 Score=223.18 Aligned_cols=124 Identities=25% Similarity=0.261 Sum_probs=105.5
Q ss_pred HhHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEEeCCCccc---------------CCcccchHHHHHHHHHHHh
Q 029549 10 PDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTET---------------RNATRHAEMEAIDVLLDQW 74 (191)
Q Consensus 10 ~~~~~~m~~Ai~~A~~a~~~~~~pvGavIv~~g~Ii~~g~n~~~~~---------------~~~~~HAE~~Ai~~~~~~~ 74 (191)
++|++||++|+++|+++. .+++|||||||+||+||++|+|..... .+++.|||++||+++.+..
T Consensus 40 ~~de~~M~~A~~~A~~s~-~~~~~VGAVIV~dg~Iia~G~N~~~~~~~~c~d~g~~~~~~~~~~t~HAE~~AI~~A~~~g 118 (184)
T 2hvw_A 40 SWQDYFMANAELISKRST-CNRAYVGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAKEG 118 (184)
T ss_dssp CHHHHHHHHHHHHGGGCC-CTTCCCEEEEEETTEEEEEEECEESTTSCCHHHHCCCEETTEECSEECHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcC-CCCCCEEEEEEECCEEEEEEECCCcccccccccccccccccccCCccCHHHHHHHHHHHcC
Confidence 478999999999999987 579999999999999999999986543 2679999999999997652
Q ss_pred hhCCCChhhhhhcCCCcEEEecCCChHHHHHHHHHhCCCeEEEeecCCCCcccccccccccccccccccccccCCCCeEE
Q 029549 75 QKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKC 154 (191)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~ly~T~EPC~mC~~ai~~sgi~rVvy~~~~~~~g~~g~~~~l~~~~~~~~~~~~~l~~~~i~V 154 (191)
..+.++|||+|+|||+||+++|+|+||+||||+.++++... +.+.|+++||+|
T Consensus 119 -----------~~l~g~tlYvTlEPC~mCa~aIi~agI~rVVy~~~~~~~~~----------------~~~~L~~aGIeV 171 (184)
T 2hvw_A 119 -----------ISANNTEIYVTHFPCINCTKALLQAGVKKITYNTAYRIHPF----------------AIELMTQKEVEY 171 (184)
T ss_dssp -----------CCCTTEEEEEEECCCHHHHHHHHHHTEEEEEEEECCSCCHH----------------HHHHHHHHTCEE
T ss_pred -----------CCceeEEEEECCCCHHHHHHHHHHHCCCeEEEEecCCCCHH----------------HHHHHHHCCCEE
Confidence 35799999999999999999999999999999998765321 135678899999
Q ss_pred EccCCHH
Q 029549 155 TGGVMAS 161 (191)
Q Consensus 155 ~~gvl~~ 161 (191)
..+++++
T Consensus 172 ~~~~~~~ 178 (184)
T 2hvw_A 172 VQHDVPR 178 (184)
T ss_dssp EECCCCC
T ss_pred EEecchh
Confidence 8877643
No 15
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=99.98 E-value=2.9e-34 Score=226.89 Aligned_cols=142 Identities=22% Similarity=0.301 Sum_probs=111.9
Q ss_pred CCCCCCCHhHHHHHHHHHHHHHHhhcCCCCcEEEEEe-eCCeEEEEEeCCCccc------------CCc-------ccch
Q 029549 3 SSGEEWSPDTLAFMDLAIQQAKLALDSLEVPVGCVIL-EDGKVIAAGRNRTTET------------RNA-------TRHA 62 (191)
Q Consensus 3 ~~~~~~~~~~~~~m~~Ai~~A~~a~~~~~~pvGavIv-~~g~Ii~~g~n~~~~~------------~~~-------~~HA 62 (191)
++.+...++|++||++|+++|+++.. +++||||||| +||+||++|+|..+.. +++ +.||
T Consensus 4 ~~~~~~~~~d~~~M~~A~~~A~~s~~-p~~~VGAvIV~~dg~Iia~G~N~~~~~~~d~~~~~~~~~g~p~~~~~~~t~HA 82 (178)
T 2w4l_A 4 KKRDDYLEWPEYFMAVAFLSAQRSKD-PNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYPYVCHA 82 (178)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHTTCCC-SSCCCEEEEECTTSCEEEEEESBCCTTCCTTTSCCCSCCSSGGGSSTTTCBCH
T ss_pred cccccccHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEecCCEEEEEEECCCCcCccccccccccccCCccccccCCcCCH
Confidence 35556667899999999999999975 4999999999 5999999999987532 333 7999
Q ss_pred HHHHHHHHHHHhhhCCCChhhhhhcCCCcEEEecCCChHHHHHHHHHhCCCeEEEeecCCC-Cccccccccccccccccc
Q 029549 63 EMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSILGIKEVYYGCANEK-FGGCGSILSLHLSDSKML 141 (191)
Q Consensus 63 E~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~T~EPC~mC~~ai~~sgi~rVvy~~~~~~-~g~~g~~~~l~~~~~~~~ 141 (191)
|++||.++.. ..+.++|||||+|||+||+++|+|+||+||||+..+.. .... .
T Consensus 83 E~~AI~~a~g-------------~~~~g~tlYvTlePC~~Ca~aIi~agI~rVVy~~~~~~d~~~~-------------~ 136 (178)
T 2w4l_A 83 ELNAIMNKNL-------------TDVKGCSMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDSDEA-------------T 136 (178)
T ss_dssp HHHHHHC-----------------CCTTCEEEEEECCCHHHHHHHHHTTCCEEEEEECTTTTSHHH-------------H
T ss_pred HHHHHHHhcC-------------CCccccEEEEeCCcHHHHHHHHHHHCCCEEEEEeccCCCCcch-------------H
Confidence 9999998741 35789999999999999999999999999999986222 1100 0
Q ss_pred ccccccCCCCeEEEccCCHHHHHHHHHHHHHh
Q 029549 142 NSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQ 173 (191)
Q Consensus 142 ~~~~~l~~~~i~V~~gvl~~e~~~l~~~f~~~ 173 (191)
.+.+.|+++||+|.. +++++.+|+..|...
T Consensus 137 ~~~~~L~~aGI~V~~--~~~~~~~l~~~f~~~ 166 (178)
T 2w4l_A 137 AARLLFNMAGVTFRK--FIPKCSKIVIDFDSI 166 (178)
T ss_dssp HHHHHHHHHTCEEEE--CCCSCSEEEEEGGGC
T ss_pred HHHHHHHHCCCEEEE--ccHHHHHHHHHHHhh
Confidence 124668889999985 788888888888654
No 16
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri}
Probab=99.92 E-value=7.9e-26 Score=182.70 Aligned_cols=79 Identities=24% Similarity=0.432 Sum_probs=68.5
Q ss_pred HHHHHhhcCCCCcEEEEEeeCCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhcCCCcEEEecCCCh
Q 029549 21 QQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPC 100 (191)
Q Consensus 21 ~~A~~a~~~~~~pvGavIv~~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~T~EPC 100 (191)
+.++.....+|+|||||||+||+||+.|. .++.|||++||+ . ..+.++|||+|+|||
T Consensus 11 d~~k~~~t~PNPpVGAVIVkDGeIIA~Ge-------~gTaHAEInAIr------g----------~~L~GaTLYVTLEPC 67 (278)
T 3g8q_A 11 DVKKILNEIPKRTVTAALLEGGEIVAVEE-------ADDEHAERKLVR------R----------HDVEGKVVFVTARPC 67 (278)
T ss_dssp EHHHHHHHSCCSSCEEEEEETTEEEEEEE-------CSSSCHHHHHHH------H----------SCCTTCEEEESSCCC
T ss_pred hHhHHhccCCCCCEEEEEEECCEEEEecC-------CCCCCHHHHHhC------C----------CCCCCcEEEEeCCch
Confidence 44555556789999999999999999992 299999999996 1 247899999999999
Q ss_pred HHHHHHHHHhCCCeEEEeecCC
Q 029549 101 IMCAAALSILGIKEVYYGCANE 122 (191)
Q Consensus 101 ~mC~~ai~~sgi~rVvy~~~~~ 122 (191)
+||++||+|+||+||||+..+.
T Consensus 68 ~MCAgAII~AGIkRVVYGa~~~ 89 (278)
T 3g8q_A 68 LYCARELAEAGVAGVVYLGRGR 89 (278)
T ss_dssp HHHHHHHHTTTCCEEEEEECSS
T ss_pred HHHHHHHHHhCCCEEEEEecCC
Confidence 9999999999999999999754
No 17
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=99.82 E-value=5.2e-20 Score=146.34 Aligned_cols=118 Identities=16% Similarity=0.211 Sum_probs=88.0
Q ss_pred CCcEEEEEee--C---CeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhcCCCcEEEecCCChHHHHH
Q 029549 31 EVPVGCVILE--D---GKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAA 105 (191)
Q Consensus 31 ~~pvGavIv~--~---g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~T~EPC~mC~~ 105 (191)
+..+.|..|+ + +.||+.|+|+. .+++.|||++||+++.+++.. ....++|||||+|||+||++
T Consensus 32 ~~tyLcy~v~~~~~~~~~ii~~G~~~~---~~~~~HAE~~Ai~~a~~~l~~---------~~~~g~TlYvTlePC~~Ca~ 99 (190)
T 2nyt_A 32 NKTFLCYVVEAQGKGGQVQASRGYLED---EHAAAHAEEAFFNTILPAFDP---------ALRYNVTWYVSSSPCAACAD 99 (190)
T ss_pred CceEEEEEEEecCCCCCCeEEEEECCC---CCCCcCHHHHHHHHHHHhcCc---------cccCCeEEEEEcChHHHHHH
Confidence 6779999995 3 56999999984 379999999999999754321 12349999999999999999
Q ss_pred HHHHh-----CCCeEEEeecCCCCcccccccccccccccccccccccCCCCeEEEccCCHHHHHHHHHHHHH
Q 029549 106 ALSIL-----GIKEVYYGCANEKFGGCGSILSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYE 172 (191)
Q Consensus 106 ai~~s-----gi~rVvy~~~~~~~g~~g~~~~l~~~~~~~~~~~~~l~~~~i~V~~gvl~~e~~~l~~~f~~ 172 (191)
+|+++ ||++|||+..++.... +... .+...|+++||+|.. +..++....|..|..
T Consensus 100 aIi~al~~~~gI~rVV~~~~d~~~~~----------p~~~-~g~~~L~~aGI~V~~-~~~~e~~~~w~~fv~ 159 (190)
T 2nyt_A 100 RIIKTLSKTKNLRLLILVGRLFMWEE----------PEIQ-AALKKLKEAGCKLRI-MKPQDFEYVWQNFVE 159 (190)
T ss_pred HHHHhhhhcCCccEEEEEeecCCcCC----------hHHH-HHHHHHHHCCCEEEE-ecHHHHHHHHHHHHH
Confidence 99999 9999999987653100 1001 235678899999984 334556666666665
No 18
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=99.72 E-value=2.8e-17 Score=124.25 Aligned_cols=89 Identities=22% Similarity=0.337 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHhhcC-CCCcEEEEEee-CCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhcCC
Q 029549 12 TLAFMDLAIQQAKLALDS-LEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFS 89 (191)
Q Consensus 12 ~~~~m~~Ai~~A~~a~~~-~~~pvGavIv~-~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~ 89 (191)
++.+|+.|++.+++++.. +++||||+|+. ||+|+ .|+|..+...+++.|||+.||.++... +. ..+.
T Consensus 3 ~~~l~~~A~~aa~~ayapYs~~~VGAal~~~dG~i~-~G~Nvena~~~~t~cAE~~Ai~~A~~~-G~---------~~~~ 71 (136)
T 1uwz_A 3 RQELITEALKARDMAYAPYSKFQVGAALLTKDGKVY-RGCNIENAAYSMCNCAEATALFKAVSE-GD---------TEFQ 71 (136)
T ss_dssp HHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHH-TC---------CCEE
T ss_pred HHHHHHHHHHHHHhccCccCCCCEEEEEEeCCCeEE-EEeCcccCCCCCccCHHHHHHHHHHHC-CC---------CCeE
Confidence 678999999999999876 79999999996 99999 799999888899999999999999876 32 2468
Q ss_pred CcEEEec----CCChHHHHHHHHHhC
Q 029549 90 KCCLYVT----CEPCIMCAAALSILG 111 (191)
Q Consensus 90 ~~~ly~T----~EPC~mC~~ai~~sg 111 (191)
.+++|++ ++||.||.++|.+.+
T Consensus 72 ~~~l~~~~~~~~~PCg~Crq~l~e~~ 97 (136)
T 1uwz_A 72 MLAVAADTPGPVSPCGACRQVISELC 97 (136)
T ss_dssp EEEEEESCSSSCCCCHHHHHHHHHHS
T ss_pred EEEEEeCCCCccCHHHHHHHHHHHcC
Confidence 9999995 999999999999997
No 19
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=99.68 E-value=5.7e-16 Score=116.21 Aligned_cols=94 Identities=17% Similarity=0.163 Sum_probs=80.8
Q ss_pred CCCHhHHHHHHHHHHHHHHhhcCCCCcEEEEEe-eCCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhh
Q 029549 7 EWSPDTLAFMDLAIQQAKLALDSLEVPVGCVIL-EDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIA 85 (191)
Q Consensus 7 ~~~~~~~~~m~~Ai~~A~~a~~~~~~pvGavIv-~~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~ 85 (191)
+++++++.+|+.|++++++++..+++||||+|+ +||+|+ .|+|.. ..+++.|||+.||.++... +.
T Consensus 2 ~l~~~~~~L~~~A~~a~~~ay~~s~f~VGAal~~~dG~i~-~G~NvE--~~~~t~cAE~~Ai~~A~~~-G~--------- 68 (130)
T 2z3g_A 2 PLSQEESTLIERATATINSIPISEDYSVASAALSSDGRIF-TGVNVY--HFTGGPCAELVVLGTAAAA-AA--------- 68 (130)
T ss_dssp CCCHHHHHHHHHHHHHHHHSCCCSSSCEEEEEEETTSCEE-EEECCC--CTTTCCCHHHHHHHHHHHT-TC---------
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEecCCeEE-EEeccc--cCCcccCHHHHHHHHHHHc-CC---------
Confidence 578899999999999999998778899999999 499999 699987 4788999999999999764 21
Q ss_pred hcCCCcEEEe-----cCCChHHHHHHHHHhCCC
Q 029549 86 EKFSKCCLYV-----TCEPCIMCAAALSILGIK 113 (191)
Q Consensus 86 ~~~~~~~ly~-----T~EPC~mC~~ai~~sgi~ 113 (191)
..+...++|+ +++||.||.+.|.+.+-.
T Consensus 69 ~~~~~i~vv~~~~~~~~~PCG~Crq~l~e~~~~ 101 (130)
T 2z3g_A 69 GNLTCIVAIGNENRGILSPCGRCRQVLLDLHPG 101 (130)
T ss_dssp CCEEEEEEEETTTTEEECCCHHHHHHHHHHCTT
T ss_pred CceEEEEEEECCCCCccCcCHHHHHHHHHhCCC
Confidence 2467888888 689999999999999744
No 20
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=99.65 E-value=7.1e-16 Score=117.76 Aligned_cols=91 Identities=21% Similarity=0.318 Sum_probs=79.6
Q ss_pred HhHHHHHHHHHHHHHHhhcC-CCCcEEEEEe-eCCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhc
Q 029549 10 PDTLAFMDLAIQQAKLALDS-LEVPVGCVIL-EDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEK 87 (191)
Q Consensus 10 ~~~~~~m~~Ai~~A~~a~~~-~~~pvGavIv-~~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~ 87 (191)
.+++++|++|++++++++.. +++||||+|+ +||+|+ .|+|..+...+.+.|||+.||.++... +. ..
T Consensus 13 ~~~~~L~~~A~~a~~~ayapys~f~VGAal~~~dG~i~-~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~---------~~ 81 (146)
T 2fr5_A 13 EHVQRLLLSSREAKKSAYCPYSRFPVGAALLTGDGRIF-SGCNIENACYPLGVCAERTAIQKAISE-GY---------KD 81 (146)
T ss_dssp HHHHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHT-TC---------CC
T ss_pred HHHHHHHHHHHHHHHhcCCCcCCCCEEEEEEeCCCcEE-EEEeccccCCCCCcCHHHHHHHHHHhC-CC---------Cc
Confidence 45678999999999999865 5999999999 599999 799999888889999999999999875 22 24
Q ss_pred CCCcEEEec-----CCChHHHHHHHHHhC
Q 029549 88 FSKCCLYVT-----CEPCIMCAAALSILG 111 (191)
Q Consensus 88 ~~~~~ly~T-----~EPC~mC~~ai~~sg 111 (191)
+....+|++ .+||.||.++|.+.+
T Consensus 82 l~~i~v~~~~~~~~~~PCG~Crq~l~E~~ 110 (146)
T 2fr5_A 82 FRAIAISSDLQEEFISPCGACRQVMREFG 110 (146)
T ss_dssp EEEEEEEESCSSSCCCCCHHHHHHHHHTC
T ss_pred eEEEEEEeCCCCcccCCCHHHHHHHHHhC
Confidence 678899998 999999999999998
No 21
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=99.43 E-value=8.1e-13 Score=100.37 Aligned_cols=96 Identities=17% Similarity=0.083 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcEEEEEe-eCCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhcCC
Q 029549 11 DTLAFMDLAIQQAKLALDSLEVPVGCVIL-EDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFS 89 (191)
Q Consensus 11 ~~~~~m~~Ai~~A~~a~~~~~~pvGavIv-~~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~ 89 (191)
+++.+|+.|++.+++++..++ +|||+|+ +||+|+ .|+|..+...+++.|||+.||.++..... ....
T Consensus 3 ~~~~L~~~A~~a~~~ayaPyS-~VGAAl~~~dG~i~-~G~NvEnas~~~~lcAEr~Ai~~a~~~G~----------~~~~ 70 (142)
T 3b8f_A 3 IEQQLYDVVKQLIEQRYPNDW-GGAAAIRVEDGTIY-TSVAPDVINASTELCMETGAILEAHKFQK----------KVTH 70 (142)
T ss_dssp HHHHHHHHHHHHHHHHCSSSC-EEEEEEEETTSCEE-EECCCCCSSGGGCCCTTHHHHHHHHHHTC----------CEEE
T ss_pred HHHHHHHHHHHHHHhcCCCCC-CEEEEEEeCCCcEE-EEECcccccCCcccCHHHHHHHHHHHCCC----------CcEE
Confidence 568899999999999998878 9999998 499998 89999988889999999999999976521 1245
Q ss_pred CcEEEe--------cCCChHHHHHHHHHhCCCeEEEe
Q 029549 90 KCCLYV--------TCEPCIMCAAALSILGIKEVYYG 118 (191)
Q Consensus 90 ~~~ly~--------T~EPC~mC~~ai~~sgi~rVvy~ 118 (191)
...++. ++-||.+|.+.|...+-.-.|+.
T Consensus 71 ~~~v~~~~~~~~~~~~sPCG~CRq~l~e~~~~~~v~~ 107 (142)
T 3b8f_A 71 SICLARENEHSELKVLSPCGVCQERLFYWGPEVQCAI 107 (142)
T ss_dssp EEEEEESSTTSCCEECCCCHHHHHHHGGGCTTCEEEC
T ss_pred EEEEEecCCCCCCCCCCcHHHHHHHHHHhCCCCEEEE
Confidence 566665 34599999999999985444443
No 22
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=99.37 E-value=2.2e-12 Score=97.40 Aligned_cols=101 Identities=21% Similarity=0.234 Sum_probs=75.8
Q ss_pred CCCCCHhHHHHHHHHHHHHHHhhcC-CCCcEEEEEee-CCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChh
Q 029549 5 GEEWSPDTLAFMDLAIQQAKLALDS-LEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQS 82 (191)
Q Consensus 5 ~~~~~~~~~~~m~~Ai~~A~~a~~~-~~~pvGavIv~-~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~ 82 (191)
+++...+++.+++.|++.+++++.. .+++|||+|+. ||+|+ .|.|..+...+.+.|||+.||.++......
T Consensus 3 ~~m~~~~~~~L~~~A~~a~~~ayaPyS~f~VGAAll~~dG~i~-~G~NvEnasy~~t~CAEr~Ai~~Av~~G~~------ 75 (138)
T 3r2n_A 3 GSMGDVNWDTLQKAAVAARANSYAPYSNFPVGVAGFVNDGRLI-TGVNVENASYGLALCAECSMISALYATGGG------ 75 (138)
T ss_dssp ----CCCHHHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCC------
T ss_pred CCCchHhHHHHHHHHHHHHHhccCCCCCCcEEEEEEeCCCcEE-EEEcccccCCCCCcCHHHHHHHHHHHcCCC------
Confidence 3444456778999999999988754 58999999985 99988 999998888889999999999999765321
Q ss_pred hhhhcCCCcEEEec------CCChHHHHHHHHHhCCCeEEEe
Q 029549 83 EIAEKFSKCCLYVT------CEPCIMCAAALSILGIKEVYYG 118 (191)
Q Consensus 83 ~~~~~~~~~~ly~T------~EPC~mC~~ai~~sgi~rVvy~ 118 (191)
.+. .++++ ..||.+|.+.|...+-..|+..
T Consensus 76 ----~i~--aiav~~~~~~~~~PCG~CRQ~l~E~~~~~i~v~ 111 (138)
T 3r2n_A 76 ----RLV--AVYCVDGNGDSLMPCGRCRQLLYEHGGPELKIM 111 (138)
T ss_dssp ----CEE--EEEEECTTSCBCCCCHHHHHHHHHHHCTTCEEE
T ss_pred ----ceE--EEEEEcCCCCcCCCCHHHHHHHHHhCCCCEEEE
Confidence 122 34444 7999999999999863335443
No 23
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=99.34 E-value=6.4e-12 Score=95.40 Aligned_cols=92 Identities=20% Similarity=0.320 Sum_probs=75.9
Q ss_pred HhHHHHHHHHHHHHHHhhcC-CCCcEEEEEee-CCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhc
Q 029549 10 PDTLAFMDLAIQQAKLALDS-LEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEK 87 (191)
Q Consensus 10 ~~~~~~m~~Ai~~A~~a~~~-~~~pvGavIv~-~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~ 87 (191)
.+++.+++.|++.+++++.. .+++|||+|+. ||+|+ .|.|..+...+++.|||+.||.++...... ..
T Consensus 9 ~~~~~L~~~A~~a~~~ayaPYS~f~VGAAl~~~dG~i~-~G~NvEnasy~~t~cAEr~Ai~~a~~~G~~---------~~ 78 (142)
T 1r5t_A 9 RQLEALKRAALKACELSYSPYSHFRVGCSILTNNDVIF-TGANVENASYSNCICAERSAMIQVLMAGHR---------SG 78 (142)
T ss_dssp HHHHHHHHHHHHHGGGCBCTTTCCCEEEEEECTTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCC---------SC
T ss_pred hHHHHHHHHHHHHHHhcCCCcCCCCEEEEEEeCCCCEE-EEEeecccCCCCCcCHHHHHHHHHHHcCCC---------Cc
Confidence 45677899999999998865 58999999995 99988 799998888889999999999998765221 11
Q ss_pred CCCcEEEec----C-CChHHHHHHHHHhC
Q 029549 88 FSKCCLYVT----C-EPCIMCAAALSILG 111 (191)
Q Consensus 88 ~~~~~ly~T----~-EPC~mC~~ai~~sg 111 (191)
+....++.. . .||.+|.+.|...+
T Consensus 79 i~~i~vv~~~~~~~~~PCG~CRq~l~e~~ 107 (142)
T 1r5t_A 79 WKCMVICGDSEDQCVSPCGVCRQFINEFV 107 (142)
T ss_dssp CCEEEEEESCSSSCCCCCHHHHHHHHTTS
T ss_pred eEEEEEEeCCCCcccCHHHHHHHHHHHhC
Confidence 567778873 5 89999999999986
No 24
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=99.30 E-value=1.5e-11 Score=93.16 Aligned_cols=89 Identities=24% Similarity=0.319 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHhhcC-CCCcEEEEEee-CCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhcCC
Q 029549 12 TLAFMDLAIQQAKLALDS-LEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFS 89 (191)
Q Consensus 12 ~~~~m~~Ai~~A~~a~~~-~~~pvGavIv~-~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~ 89 (191)
++++++.|++.+++++.. .+++|||+|+. ||+|+ .|.|..+...+.+.|||+.||.++..... ..+.
T Consensus 12 ~~~L~~~A~~a~~~AyaPYS~f~VGAAll~~dG~i~-~G~NvEnasy~~t~CAEr~Ai~~Avs~G~----------~~~~ 80 (141)
T 2d30_A 12 SKQLIQEAIEARKQAYVPYSKFQVGAALLTQDGKVY-RGCNVENASYGLCNCAERTALFKAVSEGD----------KEFV 80 (141)
T ss_dssp HHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTCCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTC----------CCEE
T ss_pred HHHHHHHHHHHHHhcCCCcCCCcEEEEEEeCCCCEE-EeeccccCCCCcccCHHHHHHHHHHHCCC----------CceE
Confidence 567889999988888865 68999999995 99988 99999888888999999999999876421 1233
Q ss_pred CcEEEec----CCChHHHHHHHHHhC
Q 029549 90 KCCLYVT----CEPCIMCAAALSILG 111 (191)
Q Consensus 90 ~~~ly~T----~EPC~mC~~ai~~sg 111 (191)
...+++. ..||.+|.+.|...+
T Consensus 81 aiav~~~~~~~~~PCG~CRQ~l~E~~ 106 (141)
T 2d30_A 81 AIAIVADTKRPVPPCGACRQVMVELC 106 (141)
T ss_dssp EEEEEESCSSCCCCCHHHHHHHHHHS
T ss_pred EEEEEeCCCCccCcCHHHHHHHHHhc
Confidence 4444544 689999999999986
No 25
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=99.10 E-value=2.8e-10 Score=86.81 Aligned_cols=96 Identities=22% Similarity=0.216 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHHHhhcC-CCCcEEEEEee-CCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhcC
Q 029549 11 DTLAFMDLAIQQAKLALDS-LEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKF 88 (191)
Q Consensus 11 ~~~~~m~~Ai~~A~~a~~~-~~~pvGavIv~-~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~ 88 (191)
+.+..++.|++.++.++.. .+++|||+|.. ||+|+ .|.|..+.....+.|||+.||.++...... .+
T Consensus 24 ~~~~L~~~A~~a~~~AYaPYS~F~VGAAll~~dG~i~-tG~NvEnasy~~t~CAEr~Ai~~Avs~G~~----------~i 92 (150)
T 3mpz_A 24 NWNALRSKAIEVSRHAYAPYSGFPVGAAALVDDGRTV-TGCNVENVSYGLGLCAECAVVCALHSGGGG----------RL 92 (150)
T ss_dssp CHHHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCC----------CE
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCEEEEEEeCCCCEE-EEEecccccCCccccHHHHHHHHHHHcCCC----------ce
Confidence 4577899999988888754 58999999885 99998 999998888889999999999998764211 12
Q ss_pred CCcEEEe----cCCChHHHHHHHHHhCCCeEEE
Q 029549 89 SKCCLYV----TCEPCIMCAAALSILGIKEVYY 117 (191)
Q Consensus 89 ~~~~ly~----T~EPC~mC~~ai~~sgi~rVvy 117 (191)
....++. ...||.+|.+.|...+-..|++
T Consensus 93 ~aiavv~~~~~~~~PCG~CRQ~L~Ef~~~~v~v 125 (150)
T 3mpz_A 93 VALSCVGPDGGVLMPCGRCRQVLLEHGGPELLI 125 (150)
T ss_dssp EEEEEECTTSCBCCCCHHHHHHHHHHHCTTCEE
T ss_pred EEEEEEcCCCCccCCCHHHHHHHHHhCCCCEEE
Confidence 2333332 3689999999999885333433
No 26
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=99.08 E-value=8.3e-10 Score=92.87 Aligned_cols=94 Identities=19% Similarity=0.163 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHHHHhhcCC-CCcEEEEEee-CCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhcC
Q 029549 11 DTLAFMDLAIQQAKLALDSL-EVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKF 88 (191)
Q Consensus 11 ~~~~~m~~Ai~~A~~a~~~~-~~pvGavIv~-~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~ 88 (191)
+++.+++.|++.+++++... ++||||+|+. ||+|+ .|+|..+...+++.|||+.||.++..... + ...+
T Consensus 187 ~~~~L~~~A~~a~~~ayaPYS~f~VGAAl~~~dG~i~-tG~NvEnasy~~tlCAEr~Ai~~av~~G~----~----~~~i 257 (294)
T 1ctt_A 187 TGDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIF-SGSYAENAAFNPTLPPLQGALILLNLKGY----D----YPDI 257 (294)
T ss_dssp CSSHHHHHHHHHHHTCBCTTTCCCEEEEEEETTSCEE-EEECBCCTTSTTCBCHHHHHHHHHHHTTC----C----GGGE
T ss_pred ChHHHHHHHHHHHHhcCCCcCCCceEEEEEeCCCCEE-EEEeeecCCCCCccCHHHHHHHHHHHcCC----C----cCCE
Confidence 45789999999999988764 8999999995 89877 89999998899999999999999875421 0 1246
Q ss_pred CCcEEEecCC----ChHHHHHHHHHhCCC
Q 029549 89 SKCCLYVTCE----PCIMCAAALSILGIK 113 (191)
Q Consensus 89 ~~~~ly~T~E----PC~mC~~ai~~sgi~ 113 (191)
+...++...+ ||.||.+.|...+-.
T Consensus 258 ~~i~vv~~~~~~~sPCG~CRq~L~ef~~~ 286 (294)
T 1ctt_A 258 QRAVLAEKADAPLIQWDATSATLKALGCH 286 (294)
T ss_dssp EEEEEEECTTCSSCCHHHHHHHHHHHTCC
T ss_pred EEEEEEecCCCCcCccHHHHHHHHHHCCC
Confidence 7888888777 999999999998743
No 27
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=98.91 E-value=1.7e-08 Score=77.56 Aligned_cols=94 Identities=21% Similarity=0.242 Sum_probs=68.4
Q ss_pred CCCCCHhHHHHHHHHHHHHHHhhcCCC-CcEEEEEee-CCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChh
Q 029549 5 GEEWSPDTLAFMDLAIQQAKLALDSLE-VPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQS 82 (191)
Q Consensus 5 ~~~~~~~~~~~m~~Ai~~A~~a~~~~~-~pvGavIv~-~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~ 82 (191)
-+++++++++.++.|++..+. ....+ ++|||+|.. ||+|+ .|.|..+ ...+.|||..||.++......
T Consensus 24 ~~~L~~ed~~Li~~A~~a~~~-~PyS~~f~VGAAll~~dG~i~-tG~NVEn--~~~~lCAEr~Ai~~Avs~G~~------ 93 (158)
T 3oj6_A 24 PEPLSAAGQNLIDTATSVING-IPVSDFYSVASAAISDDGRVF-SGVNVYH--FNGGPCAELVVLGVAAAAGAT------ 93 (158)
T ss_dssp -CBCCHHHHHHHHHHHHHHHT-SCCCSSSCEEEEEEETTSCEE-EEECCCC--TTTCCCHHHHHHHHHHHTTCC------
T ss_pred cccCCHHHHHHHHHHHHHHHh-CCCCCCCcEEEEEEeCCCCEE-EEEcccc--CCccccHHHHHHHHHHHhCCC------
Confidence 356888999999999987664 22334 899999885 99988 9999864 567899999999999764321
Q ss_pred hhhhcCCCcEEEec-----CCChHHHHHHHHHhCC
Q 029549 83 EIAEKFSKCCLYVT-----CEPCIMCAAALSILGI 112 (191)
Q Consensus 83 ~~~~~~~~~~ly~T-----~EPC~mC~~ai~~sgi 112 (191)
.+....+... .-||..|.+.|...+-
T Consensus 94 ----~~~ai~vv~~~~~~~~~PCG~CRQvL~Ef~~ 124 (158)
T 3oj6_A 94 ----KLTHIVAIANEGRGILSPCGRCRQVLADLHP 124 (158)
T ss_dssp ----CEEEEEEEETTTTEEECCCHHHHHHHHHHST
T ss_pred ----ceEEEEEEeCCCCCcCCCCHHHHHHHHHhCC
Confidence 1112222222 3699999999999863
No 28
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=98.89 E-value=4.8e-09 Score=88.25 Aligned_cols=87 Identities=22% Similarity=0.161 Sum_probs=64.1
Q ss_pred HHHHHHHHH-HHHHHhhcC-CCCcEEEEEee-CCeEEEEEeCCCccc--CCcccchHHHHHHHHHHHhhhCCCChhhhhh
Q 029549 12 TLAFMDLAI-QQAKLALDS-LEVPVGCVILE-DGKVIAAGRNRTTET--RNATRHAEMEAIDVLLDQWQKNGLSQSEIAE 86 (191)
Q Consensus 12 ~~~~m~~Ai-~~A~~a~~~-~~~pvGavIv~-~g~Ii~~g~n~~~~~--~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~ 86 (191)
++.++..+. +...+++.. .+++|||+++. ||+|+ .|.|..+.. .+.+.|||+.||.++.....
T Consensus 49 ~~~ll~~~a~~a~~~AyaPyS~f~VGAall~~dG~i~-~G~NvEnas~~~~~t~CAEr~Ai~~A~~~G~----------- 116 (294)
T 1ctt_A 49 EDALAFALLPLAAACARTPLSNFNVGAIARGVSGTWY-FGANMEFIGATMQQTVHAEQSAISHAWLSGE----------- 116 (294)
T ss_dssp HHHHHHHHHHHHHHTCBCTTTCCCCEEEEEETTSCEE-EEECBCCTTSCGGGCBCHHHHHHHHHHHTTC-----------
T ss_pred HHHHHHHHHHHHHHhccCccCCCcEEEEEEeCCCCEE-EEEcCCccCccCCCccCHHHHHHHHHHHcCC-----------
Confidence 344444444 444556654 59999999995 99988 999987654 34689999999999876421
Q ss_pred cCCCcEEEecCCChHHHHHHHHHhC
Q 029549 87 KFSKCCLYVTCEPCIMCAAALSILG 111 (191)
Q Consensus 87 ~~~~~~ly~T~EPC~mC~~ai~~sg 111 (191)
-.-..+.++..||.+|.+.|...+
T Consensus 117 -~~~~~iav~~~PCG~CRQ~l~E~~ 140 (294)
T 1ctt_A 117 -KALAAITVNYTPCGHCRQFMNELN 140 (294)
T ss_dssp -CCEEEEEESSCCCHHHHHHHTTBT
T ss_pred -CcEEEEEEEcCCCHHHHHHHHHhC
Confidence 123456678899999999999986
No 29
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=98.84 E-value=2.2e-08 Score=75.34 Aligned_cols=92 Identities=23% Similarity=0.300 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHHHHhhcC-CCCcEEEEEee-CCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhcC
Q 029549 11 DTLAFMDLAIQQAKLALDS-LEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKF 88 (191)
Q Consensus 11 ~~~~~m~~Ai~~A~~a~~~-~~~pvGavIv~-~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~ 88 (191)
.+...++.|.+..++++.. .+++|||+|.. ||+|+ .|.|..+.....+.|||..||.++....... ..+
T Consensus 10 ~~~~L~~~A~~a~~~AyaPYS~F~VGAAll~~dG~iy-tG~NVEnasy~~t~CAEr~Ai~~Avs~G~~~--------~~i 80 (138)
T 3dmo_A 10 THHALIEAAKAAREKAYAPYSNFKVGAALVTNDGKVF-HGCNVENASYGLCNCAERTALFSALAAGYRP--------GEF 80 (138)
T ss_dssp CHHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCT--------TCE
T ss_pred cHHHHHHHHHHHHHhccCCcCCCCEEEEEEeCCCCEE-EEEeecccccccccCHHHHHHHHHHHcCCCc--------ccE
Confidence 4667788888888888764 48999999885 99988 9999988877889999999999987642110 012
Q ss_pred CCcEEEe----cCCChHHHHHHHHHhC
Q 029549 89 SKCCLYV----TCEPCIMCAAALSILG 111 (191)
Q Consensus 89 ~~~~ly~----T~EPC~mC~~ai~~sg 111 (191)
....+.. ..-||..|.+.|...+
T Consensus 81 ~aiavv~~~~~~~~PCG~CRQ~l~Ef~ 107 (138)
T 3dmo_A 81 AAIAVVGETHGPIAPCGACRQVMIELG 107 (138)
T ss_dssp EEEEEEESCSSSCCCCHHHHHHHHHHH
T ss_pred EEEEEEcCCCCccCCCHHHHHHHHHhC
Confidence 2212221 1579999999999884
No 30
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=98.28 E-value=2.4e-06 Score=71.74 Aligned_cols=79 Identities=23% Similarity=0.265 Sum_probs=57.8
Q ss_pred HHHHHhhcC-CCCcEEEEEee-CCeEEEEEeCCCcc--cCCcccchHHHHHHHHHHHhhhCCCChhhhhhcCCCcEEEec
Q 029549 21 QQAKLALDS-LEVPVGCVILE-DGKVIAAGRNRTTE--TRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVT 96 (191)
Q Consensus 21 ~~A~~a~~~-~~~pvGavIv~-~g~Ii~~g~n~~~~--~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~T 96 (191)
..+..|+.. .+++|||++.. ||+|+ .|.|..+. ....+.|||+.||.++...... .=..+.+.
T Consensus 62 ~A~~~AyaPyS~F~VGAAll~~dG~i~-~G~NvEna~as~~~t~CAEr~Ai~~Av~~G~~------------~i~~iav~ 128 (298)
T 4eg2_A 62 IAAAYSYAPISEFYVGAIVRGISGRLY-LGANMEFTGAQLGQTVHAEQCAISHAWMKGEK------------GVADITIN 128 (298)
T ss_dssp HHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBCCTTSCGGGCBCHHHHHHHHHHHTTCS------------CEEEEEES
T ss_pred HHHhhCcCCcCCCcEEEEEEECCCcEE-EEEcccccccccCccccHHHHHHHHHHhCCCC------------ceEEEEee
Confidence 333445543 48999999885 99988 99998742 3456899999999998764211 12345667
Q ss_pred CCChHHHHHHHHHhCC
Q 029549 97 CEPCIMCAAALSILGI 112 (191)
Q Consensus 97 ~EPC~mC~~ai~~sgi 112 (191)
.-||..|.+.|...+-
T Consensus 129 ~~PCG~CRQ~l~Ef~~ 144 (298)
T 4eg2_A 129 FSPCGHCRQFMNELTT 144 (298)
T ss_dssp SCCCHHHHHHHTTBTT
T ss_pred cCCCHHHHHHHHHhcC
Confidence 8999999999999864
No 31
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=98.13 E-value=1.2e-05 Score=67.55 Aligned_cols=90 Identities=11% Similarity=0.093 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHhhcC-CCCcEEEEEee-CCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhcCCC
Q 029549 13 LAFMDLAIQQAKLALDS-LEVPVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSK 90 (191)
Q Consensus 13 ~~~m~~Ai~~A~~a~~~-~~~pvGavIv~-~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~ 90 (191)
+..++.|++.+++++.. .+++|||+|.. ||+|. .|.|-.+...+++.+||..||.++...... . .....
T Consensus 193 ~~L~~~A~~a~~~ayaPYS~~~vGAAl~t~dG~iy-tG~nvEnAay~~slcAEr~Al~~av~~G~~----~----~~i~a 263 (298)
T 4eg2_A 193 EELIQQALRAMNISHSPYTQNFSGVALKMRSGAIY-LGAYAENAAFNPSLPPLQVALAQAMMMGES----F----EDIEA 263 (298)
T ss_dssp CHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCTTSTTCBCHHHHHHHHHHHTTCC----G----GGEEE
T ss_pred HHHHHHHHHHHHhccCCccCCCeEEEEEeCCCCEE-EEEeeeccccCCCCCHHHHHHHHHHHCCCC----c----cCeEE
Confidence 56889999999888854 48899999985 99988 999998888899999999999998654211 0 01223
Q ss_pred cEEEe----cCCChHHHHHHHHHhC
Q 029549 91 CCLYV----TCEPCIMCAAALSILG 111 (191)
Q Consensus 91 ~~ly~----T~EPC~mC~~ai~~sg 111 (191)
..++. ..-||.+|...|...+
T Consensus 264 iv~v~~~~~~~sPCG~CRqvL~e~~ 288 (298)
T 4eg2_A 264 AALVESATGKISHLADTQATLEVIN 288 (298)
T ss_dssp EEEEECTTCSSCCHHHHHHHHHHHC
T ss_pred EEEEeCCCCCcCCcHHHHHHHHHhC
Confidence 33332 2469999999998876
No 32
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Probab=94.24 E-value=0.043 Score=43.37 Aligned_cols=96 Identities=18% Similarity=0.223 Sum_probs=57.3
Q ss_pred cccchHHHHHHHHHHHhhhCCCChhhhhhcCCCcEEEecCCChHHHHHHHHHh-----CCCeEEEeecCCCCcccccccc
Q 029549 58 ATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSIL-----GIKEVYYGCANEKFGGCGSILS 132 (191)
Q Consensus 58 ~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~T~EPC~mC~~ai~~s-----gi~rVvy~~~~~~~g~~g~~~~ 132 (191)
...|||+.-|..+... .+++ ...-..|-|+|-.||+-|+..|+.. +|+=.||.+.--..
T Consensus 77 ~~~HAEl~FL~~~~~~----~Ld~----~~~Y~vTwy~SWSPC~~CA~~v~~FL~~~~~v~L~If~aRLY~~-------- 140 (203)
T 3v4k_A 77 EGRHAELCFLDVIPFW----KLDL----DQDYRVTCFTSWSPCFSCAQEMAKFISKNKHVSLCIKTARIYDD-------- 140 (203)
T ss_pred CCCcHHHHHHHHhhhc----cCCC----CCeEEEEEEEeCCChHHHHHHHHHHHhhCCCeEEEEEEEeeccc--------
Confidence 3579999999887542 2221 1234678999999999999999874 34444554321110
Q ss_pred cccccccccccccccCCCCeEEEccCCHHHHHHHHHHHHHhc
Q 029549 133 LHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYEQG 174 (191)
Q Consensus 133 l~~~~~~~~~~~~~l~~~~i~V~~gvl~~e~~~l~~~f~~~~ 174 (191)
...+-.+...|.+.|+.|.. +--+|-.--++.|...+
T Consensus 141 ----~~~~~~gLr~L~~aG~~v~i-M~~~ef~~CW~~FV~nq 177 (203)
T 3v4k_A 141 ----QGRCQEGLRTLAEAGAKISI-MTYSEFKHCWDTFVDHQ 177 (203)
T ss_pred ----CchHHHHHHHHHHCCCeEEe-cCHHHHHHHHHHHccCC
Confidence 00011123456677888763 23466666677777543
No 33
>3vow_A Probable DNA DC->DU-editing enzyme apobec-3C; antiviral deffense, HOST-virus interaction, metal- HIV-1 VIF, BET, single domain, sivagm, hydrolase; 2.15A {Homo sapiens} PDB: 3vm8_A
Probab=92.87 E-value=0.062 Score=42.05 Aligned_cols=97 Identities=15% Similarity=0.165 Sum_probs=58.3
Q ss_pred CCcccchHHHHHHHHHHHhhhCCCChhhhhhcCCCcEEEecCCChHHHHHHHHHh-----CCCeEEEeecCCCCcccccc
Q 029549 56 RNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMCAAALSIL-----GIKEVYYGCANEKFGGCGSI 130 (191)
Q Consensus 56 ~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~T~EPC~mC~~ai~~s-----gi~rVvy~~~~~~~g~~g~~ 130 (191)
..+..|||+.=|..+.. ..++++ ..-..|-|+|-.||+-|+..|... +|+=.||.+.--..
T Consensus 61 ~~~~~HAE~~Fl~~~~~----~~L~~~----~~y~VTwy~SwSPC~~CA~~va~FL~~~~~v~L~If~aRLY~~------ 126 (190)
T 3vow_A 61 SETHCHAERCFLSWFCD----DILSPN----TKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIFTARLYYF------ 126 (190)
T ss_dssp SCGGGSHHHHHHHHHSS----TTSCTT----SEEEEEEEEEECCCHHHHHHHHHHHHHCTTEEEEEEEEECTTT------
T ss_pred CcccccHHHHHHHHHhh----cCCCCC----ceEEEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEEEEecccc------
Confidence 34678999998887632 222221 123579999999999999988864 56666776642211
Q ss_pred cccccccccccccccccCCCCeEEEccCCHHHHHHHHHHHHH
Q 029549 131 LSLHLSDSKMLNSGDVLGRKGFKCTGGVMASEAVSLFRSFYE 172 (191)
Q Consensus 131 ~~l~~~~~~~~~~~~~l~~~~i~V~~gvl~~e~~~l~~~f~~ 172 (191)
..+ .+-.+...|.+.|+.|.. +--+|-.--++.|..
T Consensus 127 ----~~~-~~q~gLr~L~~~G~~v~i-M~~~eF~~CW~~FVd 162 (190)
T 3vow_A 127 ----QYP-CYQEGLRSLSQEGVAVEI-MDYEDFKYCWENFVY 162 (190)
T ss_dssp ----TSH-HHHHHHHHHHHHTCEEEE-CCHHHHHHHHHHHBC
T ss_pred ----cCc-hHHHHHHHHHHCCCcEEE-eChHHHHHHHHHhcc
Confidence 000 011234456678888762 224555555666653
No 34
>3bh1_A UPF0371 protein DIP2346; structural genomics, unknown function, protein structure INI PSI-2; 2.51A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID}
Probab=47.43 E-value=37 Score=29.76 Aligned_cols=56 Identities=16% Similarity=0.170 Sum_probs=38.9
Q ss_pred CHhHHHHHHHHHHHHHHhhcCCCCcEEEEEeeCCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhh
Q 029549 9 SPDTLAFMDLAIQQAKLALDSLEVPVGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQ 75 (191)
Q Consensus 9 ~~~~~~~m~~Ai~~A~~a~~~~~~pvGavIv~~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~ 75 (191)
+.+|+.-...|.+.|+.. +.|.+|+-+.||+|| +|-+. ...+|--.+|-+|.+.+.
T Consensus 342 ~~~dR~vv~~A~~~ae~t----~~pa~AieL~DG~Iv-TGKtS------~LlgasaA~lLNAlK~La 397 (507)
T 3bh1_A 342 KASQRVVVEPARQVEERT----SLPGCAIELVDGSII-TGATS------DLLGCSSSMLLNALKHLA 397 (507)
T ss_dssp CGGGSTTHHHHHHHHHHH----SSCEEEEECTTSCEE-EEECC------SSBCHHHHHHHHHHHHHH
T ss_pred ChHhhHHHHHHHHHHHHh----CCCeEEEEeCCCCEE-eCCCc------cccchHHHHHHHHHHHHc
Confidence 344444455566666544 378888888999999 78764 677777777777777664
No 35
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=35.56 E-value=1.1e+02 Score=21.40 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=24.2
Q ss_pred EEEEeeCCeEEEE-EeCCCcc-cCCcccchHHHHHHHHHHHhh
Q 029549 35 GCVILEDGKVIAA-GRNRTTE-TRNATRHAEMEAIDVLLDQWQ 75 (191)
Q Consensus 35 GavIv~~g~Ii~~-g~n~~~~-~~~~~~HAE~~Ai~~~~~~~~ 75 (191)
|+||.++|+++.. +...... .......||..|+..+++...
T Consensus 22 G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~ 64 (149)
T 2ehg_A 22 GFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETML 64 (149)
T ss_dssp EEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 7777778887632 2221100 012335799999999887654
No 36
>2fb5_A Hypothetical membrane spanning protein; structural genomics, membrane protein, PSI, protein structur initiative; 1.99A {Bacillus cereus} SCOP: d.320.1.1
Probab=33.49 E-value=22 Score=27.79 Aligned_cols=18 Identities=17% Similarity=0.410 Sum_probs=15.4
Q ss_pred EEEEEeeCCeEEEEEeCC
Q 029549 34 VGCVILEDGKVIAAGRNR 51 (191)
Q Consensus 34 vGavIv~~g~Ii~~g~n~ 51 (191)
=||||+++|+|++.|+--
T Consensus 135 DGAvII~~~rI~aA~~~L 152 (205)
T 2fb5_A 135 DGAVLVKNNHIVSAANIL 152 (205)
T ss_dssp SSEEEEETTEEEEEEEBC
T ss_pred CcEEEEECCEEEEEEEEe
Confidence 599999999999988753
No 37
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=24.80 E-value=39 Score=26.55 Aligned_cols=20 Identities=20% Similarity=0.401 Sum_probs=17.6
Q ss_pred hcCCCcEEEecCCChHHHHH
Q 029549 86 EKFSKCCLYVTCEPCIMCAA 105 (191)
Q Consensus 86 ~~~~~~~ly~T~EPC~mC~~ 105 (191)
..|+-|--++..+||.-|+.
T Consensus 69 ~~C~~C~nlte~~~C~IC~d 88 (212)
T 3vdp_A 69 RYCKICFNITDKEVCDICSD 88 (212)
T ss_dssp EECTTTCCEESSSSCHHHHC
T ss_pred CcCCCCCCCCCCCcCCCCCC
Confidence 35899999999999999985
No 38
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=24.37 E-value=1.4e+02 Score=21.91 Aligned_cols=55 Identities=18% Similarity=0.176 Sum_probs=34.1
Q ss_pred EEEEEeeCCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhhhCCCChhhhhhcCCCcEEEecCCChHHH
Q 029549 34 VGCVILEDGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQKNGLSQSEIAEKFSKCCLYVTCEPCIMC 103 (191)
Q Consensus 34 vGavIv~~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~ly~T~EPC~mC 103 (191)
.|++|+.+|+++..+... .......||..|+..+++... ....++|+-.+-...|
T Consensus 41 ~G~vi~~~~~~~~~~~~~---~~~Tnn~aEl~Ai~~AL~~~~------------~~~v~I~tDS~~vi~~ 95 (165)
T 3p1g_A 41 AGAAVTTETEVIWARALP---AGTSAQRAELIALTQALKMAE------------GKKLNVYTDSRYAFAT 95 (165)
T ss_dssp EEEEEECSSCEEEEEEEC---TTCCHHHHHHHHHHHHHHHTB------------TSEEEEEECCHHHHHH
T ss_pred EEEEEEECCEEEEEecCC---CCCcHHHHHHHHHHHHHHHcc------------CceEEEEEchHHHHhh
Confidence 566677777766443221 122335899999999987641 2467788776554443
No 39
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=23.14 E-value=44 Score=26.52 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=17.4
Q ss_pred hcCCCcEEEecCCChHHHHH
Q 029549 86 EKFSKCCLYVTCEPCIMCAA 105 (191)
Q Consensus 86 ~~~~~~~ly~T~EPC~mC~~ 105 (191)
..|+.|--++..+||.-|+.
T Consensus 55 ~~C~~C~nlte~~~C~IC~d 74 (228)
T 1vdd_A 55 HVCPICFNITDAEKCDVCAD 74 (228)
T ss_dssp EECSSSCCEESSSSCHHHHC
T ss_pred eEcCCCCCCcCCCcCCCCCC
Confidence 35889999999999999984
No 40
>3mtw_A L-arginine carboxypeptidase CC2672; hydrolase; HET: KCX M3R; 1.70A {Caulobacter vibrioides}
Probab=21.93 E-value=66 Score=24.78 Aligned_cols=18 Identities=28% Similarity=0.551 Sum_probs=15.6
Q ss_pred EEEEEeeCCeEEEEEeCC
Q 029549 34 VGCVILEDGKVIAAGRNR 51 (191)
Q Consensus 34 vGavIv~~g~Ii~~g~n~ 51 (191)
-|+|+|+||+|++.|.+.
T Consensus 22 ~~~V~I~dG~I~~Ig~~~ 39 (403)
T 3mtw_A 22 NPLVIVTDGRITSIGKKG 39 (403)
T ss_dssp SEEEEEETTEEEEEEETT
T ss_pred CcEEEEECCEEEEEeCCC
Confidence 378999999999999764
No 41
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=21.51 E-value=1.2e+02 Score=20.55 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=24.0
Q ss_pred cEEEEEee-CCeEEEEEeCCCcccCCcccchHHHHHHHHHHHhh
Q 029549 33 PVGCVILE-DGKVIAAGRNRTTETRNATRHAEMEAIDVLLDQWQ 75 (191)
Q Consensus 33 pvGavIv~-~g~Ii~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~ 75 (191)
..|+|+.+ +|+++....-... ......||..|+..+++...
T Consensus 20 G~G~v~~~~~g~~~~~~~~~~~--~~tn~~aEl~A~~~aL~~a~ 61 (140)
T 3u3g_D 20 GIGVVITDEKGNTLHESSAYIG--ETTNNVAEYEALIRALEDLQ 61 (140)
T ss_dssp EEEEEEECTTSCEEEEEEEEEE--EECHHHHHHHHHHHHHHHHG
T ss_pred EEEEEEEeCCCCEEEEEEeeCC--CCchHHHHHHHHHHHHHHHH
Confidence 46677776 6776522111110 12334699999999987654
Done!