BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029551
(191 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|89257581|gb|ABD65070.1| plastid ribosomal protein L19, putative [Brassica oleracea]
Length = 224
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 99/157 (63%), Gaps = 20/157 (12%)
Query: 3 SQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNL---GFFVNA 59
S + PQALH IPR+ TQ PSK+LGFS+ S P ++ ++VS + ++ GF ++A
Sbjct: 5 SHLFPQALHMIPRNPTQ--PSKKLGFSSFQSCAPSMNPRLTVSRVSLNHSVSKSGFSLDA 62
Query: 60 QVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKPR 119
+ + +VRAE E + EAV A D E ED VE EVKAP+K R
Sbjct: 63 KARREVLVRAEG-----------EGEGEAVDANADT----EGNVEDVVEAGEVKAPKKTR 107
Query: 120 VKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
VKLGD+MGILN++A+E SE RP+P+IRTGD+VEIKL
Sbjct: 108 VKLGDVMGILNQKAIEVSEKLRPVPEIRTGDIVEIKL 144
>gi|18414915|ref|NP_567531.1| 50S ribosomal protein L19-1 [Arabidopsis thaliana]
gi|75248729|sp|Q8W463.1|RK191_ARATH RecName: Full=50S ribosomal protein L19-1, chloroplastic; Flags:
Precursor
gi|17065490|gb|AAL32899.1| Unknown protein [Arabidopsis thaliana]
gi|20148593|gb|AAM10187.1| unknown protein [Arabidopsis thaliana]
gi|21554252|gb|AAM63327.1| contains similarity to plastid ribosomal protein L19 [Arabidopsis
thaliana]
gi|332658510|gb|AEE83910.1| 50S ribosomal protein L19-1 [Arabidopsis thaliana]
Length = 225
Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/161 (47%), Positives = 99/161 (61%), Gaps = 23/161 (14%)
Query: 1 MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPI---GWNLGFFV 57
M LPQALH IPR+ TQ SK LGFS+ LS P + +SVS + G GF +
Sbjct: 3 MSFHRLPQALHMIPRNPTQS--SKNLGFSSFLSCAPSMDSRISVSRLSLNHPGSKFGFSL 60
Query: 58 NAQVKDSFVVRAE-ANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEE-EVKAP 115
+ +V++ F+VRAE N EAE+ E VA A++E VEE E K
Sbjct: 61 DTRVRNEFIVRAEEGNTEAESEE----------------FVAEIADTEGNVEEVVEAKPT 104
Query: 116 RKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
RKPR+KLGD+MGILN++A+E +E RP+P+IRTGD+VEIKL
Sbjct: 105 RKPRIKLGDVMGILNQKAIEVAEKVRPVPEIRTGDIVEIKL 145
>gi|359497145|ref|XP_002264869.2| PREDICTED: 50S ribosomal protein L19, chloroplastic [Vitis
vinifera]
gi|296088907|emb|CBI38456.3| unnamed protein product [Vitis vinifera]
Length = 231
Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 96/168 (57%), Gaps = 29/168 (17%)
Query: 1 MGSQVLPQALHWIPRSSTQCIPSKRLGFSTV------------LSRGPFVSHGVSVSAKP 48
M S+VLPQAL PRSS Q P K+LG ST LS F S+ + +P
Sbjct: 1 MASKVLPQALFITPRSSNQW-PPKKLGLSTFPSPRSSSLNLNRLSTSRFSSNSFAFHFRP 59
Query: 49 IGWNLGFFVNAQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVE 108
I + F F+VRAEA+ E E +E E + + V+ ++ED
Sbjct: 60 IVVSPKRF--------FIVRAEADNEGELGA---DENTEEEETVSETESEVKLDAED--- 105
Query: 109 EEEVKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
E K PRKPRVKLGDIMGILNKRA+EASE ERP+PD+RTGD+VEIKL
Sbjct: 106 --EAKPPRKPRVKLGDIMGILNKRAIEASEKERPVPDLRTGDIVEIKL 151
>gi|449458994|ref|XP_004147231.1| PREDICTED: 50S ribosomal protein L19, chloroplastic-like [Cucumis
sativus]
gi|449523724|ref|XP_004168873.1| PREDICTED: 50S ribosomal protein L19, chloroplastic-like [Cucumis
sativus]
Length = 221
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/156 (48%), Positives = 96/156 (61%), Gaps = 15/156 (9%)
Query: 1 MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQ 60
M S++LPQA+ IPR+ QC P +RLGF + +S G VS S+ IG + V A
Sbjct: 1 MASKILPQAVISIPRNPNQCAP-RRLGFCSAVS-GTRVSFSTLSSSS-IGSHFHHTVAAP 57
Query: 61 VKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKPRV 120
++ +FVVRAEAN EA++ E + D + EE K RKPRV
Sbjct: 58 LRRAFVVRAEANPEADSAAEEAPEAEVEAAVESDA------------QPEEEKPSRKPRV 105
Query: 121 KLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
KLGD+MGILNKRA+EASE ERPIPDIRTGD+VE+KL
Sbjct: 106 KLGDVMGILNKRAIEASEKERPIPDIRTGDIVELKL 141
>gi|297804426|ref|XP_002870097.1| ribosomal protein L19 family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297315933|gb|EFH46356.1| ribosomal protein L19 family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 225
Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 96/155 (61%), Gaps = 21/155 (13%)
Query: 6 LPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWN---LGFFVNAQVK 62
LPQALH PR+ TQ SK LGFS+ LS P ++ +SVS + + GF ++ +V+
Sbjct: 8 LPQALHMTPRNPTQS--SKNLGFSSFLSCAPSMNSRISVSRLSLNHSSSKFGFSLDTRVR 65
Query: 63 DSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEE-EEVKAPRKPRVK 121
F+VR E E N +A+ + VA A++E VEE E K RKPR+K
Sbjct: 66 KEFIVRVE-----EGN----------TEAESEEAVAEIADTEGNVEEVGEAKPQRKPRIK 110
Query: 122 LGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
LGD+MGILN+RA+E SE RP+P+IRTGD+VEIKL
Sbjct: 111 LGDVMGILNQRAIEVSEKVRPVPEIRTGDIVEIKL 145
>gi|18422764|ref|NP_568677.1| 50S ribosomal protein L19-2 [Arabidopsis thaliana]
gi|75247671|sp|Q8RXX5.1|RK192_ARATH RecName: Full=50S ribosomal protein L19-2, chloroplastic; Flags:
Precursor
gi|19347900|gb|AAL85972.1| unknown protein [Arabidopsis thaliana]
gi|21436235|gb|AAM51256.1| unknown protein [Arabidopsis thaliana]
gi|332008099|gb|AED95482.1| 50S ribosomal protein L19-2 [Arabidopsis thaliana]
Length = 229
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 93/158 (58%), Gaps = 15/158 (9%)
Query: 2 GSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGW---NLGFFVN 58
S +LPQALH IPR T SK LG S++L R V+ +SVS + N GF ++
Sbjct: 4 SSHLLPQALHMIPR--TPSFSSKNLGVSSILPRASSVNSRLSVSRVFLNHSSSNFGFAID 61
Query: 59 AQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKP 118
++ + F+ +AE + E E EAV + V E E E V EE K P K
Sbjct: 62 SKKRKEFIAKAEESTEGET---------EAV-VENAVETEAEGEGEATVAAEEAKPPWKT 111
Query: 119 RVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
RVKLGDIMG+LNK+A+E +E+ RP+P +RTGD+VEIKL
Sbjct: 112 RVKLGDIMGLLNKKAIEVAETVRPVPGLRTGDIVEIKL 149
>gi|21592584|gb|AAM64533.1| contains similarity to plastid ribosomal protein L19 [Arabidopsis
thaliana]
Length = 229
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 93/158 (58%), Gaps = 15/158 (9%)
Query: 2 GSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGW---NLGFFVN 58
S +LPQALH IPR T SK LG S++L R V+ +SVS + N GF ++
Sbjct: 4 SSHLLPQALHMIPR--TPSFSSKNLGVSSILPRASSVNSRLSVSRVFLNHSSSNFGFAID 61
Query: 59 AQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKP 118
++ + F+ +AE + E E EAV + V E E E V EE K P K
Sbjct: 62 SKKRREFIAKAEESTEGET---------EAV-VENAVETEAEGEGEATVAAEEAKPPWKT 111
Query: 119 RVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
RVKLGDIMG+LNK+A+E +E+ RP+P +RTGD+VEIKL
Sbjct: 112 RVKLGDIMGLLNKKAIEVAETVRPVPGLRTGDIVEIKL 149
>gi|255581980|ref|XP_002531788.1| 50S ribosomal protein L19, putative [Ricinus communis]
gi|223528581|gb|EEF30602.1| 50S ribosomal protein L19, putative [Ricinus communis]
Length = 207
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/160 (47%), Positives = 100/160 (62%), Gaps = 15/160 (9%)
Query: 1 MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRG-PFVSHG---VSVSAKPIGWNLGFF 56
M S++LPQAL IP + TQC P ++LGFS + R +S+ VS+S+ G NL
Sbjct: 1 MASKILPQALVLIPINPTQCPPPRKLGFSAAVHRSCSSLSNSTCRVSLSSNSFGSNLDSI 60
Query: 57 VNAQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPR 116
++A K F+ RAE+ E A A + EE + V+ Q E+ EE PR
Sbjct: 61 ISAFAKQRFIARAESEESAAAEVAEEESEVLEVEGQ-----------EEAKAEEIEIEPR 109
Query: 117 KPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
KP +KLGDIMGILN+RAVEASE+ERPIPDIRTGD+++IKL
Sbjct: 110 KPIIKLGDIMGILNRRAVEASENERPIPDIRTGDILQIKL 149
>gi|147854523|emb|CAN82787.1| hypothetical protein VITISV_037813 [Vitis vinifera]
Length = 231
Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 94/168 (55%), Gaps = 29/168 (17%)
Query: 1 MGSQVLPQALHWIPRSSTQCIPSKRLGFSTV------------LSRGPFVSHGVSVSAKP 48
M S+VLPQAL PRSS Q P K+LG ST LS F S+ +P
Sbjct: 1 MASKVLPQALFITPRSSNQX-PPKKLGLSTFPSPRSXSLNLNRLSTSRFSSNSFXFHFRP 59
Query: 49 IGWNLGFFVNAQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVE 108
I + F F+V AEA+ E E +E E + + V+ ++ED
Sbjct: 60 IVVSPKRF--------FIVXAEADNEGELGP---DENTEEEETVSETESEVKLDAED--- 105
Query: 109 EEEVKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
E K PRKPRVKLGDIMGILNKRA+EASE ERP+PD+RTGD+VEIKL
Sbjct: 106 --EAKPPRKPRVKLGDIMGILNKRAIEASEKERPVPDLRTGDIVEIKL 151
>gi|255629017|gb|ACU14853.1| unknown [Glycine max]
Length = 212
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 86/158 (54%), Gaps = 28/158 (17%)
Query: 1 MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQ 60
M SQVL QAL + +L F + +S V + PI W +
Sbjct: 1 MASQVLLQALF-----------APKLSFPSSSRNVALISR---VPSTPISWRCTPLI--- 43
Query: 61 VKDSFVVRAEANEEA--EANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKP 118
K SFVVRA+ N + EA E + + E V E E+E + E K+PRKP
Sbjct: 44 AKPSFVVRADTNLDGGGEATEDVPSDNAEKVS---------EGEAEQVSDSEAPKSPRKP 94
Query: 119 RVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
RVKLGDIMGILN+RA+EASE +RP PDIRTGD+VEIKL
Sbjct: 95 RVKLGDIMGILNQRAIEASEKQRPTPDIRTGDIVEIKL 132
>gi|351720814|ref|NP_001236421.1| uncharacterized protein LOC100500328 [Glycine max]
gi|255630036|gb|ACU15370.1| unknown [Glycine max]
Length = 213
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 88/158 (55%), Gaps = 27/158 (17%)
Query: 1 MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQ 60
M SQVL Q + P+ S PS + ++SR P + PI W +
Sbjct: 1 MASQVLLQQALFAPKLS---FPSSSRNVA-LISRVP---------STPISWRCTPLI--- 44
Query: 61 VKDSFVVRAEANEEA--EANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKP 118
K SFVVRA+ N + EA E + + E V E E+E + E K+PRKP
Sbjct: 45 AKPSFVVRADTNLDGGGEATEDVPSDNAEKVS---------EGEAEQVSDSEAPKSPRKP 95
Query: 119 RVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
RVKLGDIMGILN+RA+EASE +RP PDIRTGD+VEIKL
Sbjct: 96 RVKLGDIMGILNQRAIEASEKQRPTPDIRTGDIVEIKL 133
>gi|224137920|ref|XP_002326473.1| predicted protein [Populus trichocarpa]
gi|118483873|gb|ABK93827.1| unknown [Populus trichocarpa]
gi|222833795|gb|EEE72272.1| predicted protein [Populus trichocarpa]
Length = 241
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/164 (46%), Positives = 93/164 (56%), Gaps = 11/164 (6%)
Query: 1 MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGW--------N 52
MGS++LPQAL IPRS TQ K+LGFS+ ++R ++S+ S S + N
Sbjct: 1 MGSKILPQALAVIPRSPTQFPVPKKLGFSSTINRSSYLSNSASSSRFSVSRVSSTSLSSN 60
Query: 53 LGFFVNAQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEV 112
L F + SFV RAE+ + EE + E + E V
Sbjct: 61 LEAFFKDFSRQSFVTRAESES---GGGEVVEETENVEEEVVVEGSEEEEVQAEAEVEGAV 117
Query: 113 KAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
K PRKPRVKLGDI+GILNKRAVE SE ERPIPDIRTGD+VEIKL
Sbjct: 118 KEPRKPRVKLGDIIGILNKRAVETSEMERPIPDIRTGDIVEIKL 161
>gi|8809601|dbj|BAA97152.1| unnamed protein product [Arabidopsis thaliana]
Length = 286
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/152 (44%), Positives = 89/152 (58%), Gaps = 15/152 (9%)
Query: 8 QALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGW---NLGFFVNAQVKDS 64
QALH IPR T SK LG S++L R V+ +SVS + N GF ++++ +
Sbjct: 67 QALHMIPR--TPSFSSKNLGVSSILPRASSVNSRLSVSRVFLNHSSSNFGFAIDSKKRKE 124
Query: 65 FVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKPRVKLGD 124
F+ +AE + E E EAV + V E E E V EE K P K RVKLGD
Sbjct: 125 FIAKAEESTEGET---------EAV-VENAVETEAEGEGEATVAAEEAKPPWKTRVKLGD 174
Query: 125 IMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
IMG+LNK+A+E +E+ RP+P +RTGD+VEIKL
Sbjct: 175 IMGLLNKKAIEVAETVRPVPGLRTGDIVEIKL 206
>gi|388517759|gb|AFK46941.1| unknown [Lotus japonicus]
Length = 226
Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 74/158 (46%), Positives = 93/158 (58%), Gaps = 14/158 (8%)
Query: 1 MGSQVLPQA--LHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVN 58
M SQV Q L + P QC P+K LG S+ L F +S+ I W ++
Sbjct: 1 MASQVFLQQGLLLFAP---NQCSPTK-LGVSSCLGSRNFPL----ISSTSISWRCNNPLS 52
Query: 59 AQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKP 118
A K SFVVRA++N +A ++ + E + E Q V EAE E E+ K PRK
Sbjct: 53 A--KPSFVVRADSNVDATSDNAGEVPEAEGSVDQ--VPEDGEAELASDSEVEQPKPPRKQ 108
Query: 119 RVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
RVKLGD+MGILN+RA+EASES RP P+IRTGDVVEIKL
Sbjct: 109 RVKLGDVMGILNQRAIEASESMRPTPEIRTGDVVEIKL 146
>gi|351722420|ref|NP_001238523.1| uncharacterized protein LOC100305649 [Glycine max]
gi|255626193|gb|ACU13441.1| unknown [Glycine max]
Length = 213
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 86/158 (54%), Gaps = 27/158 (17%)
Query: 1 MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQ 60
M SQVL Q + P+ S PS + ++SR P + PI W +
Sbjct: 1 MASQVLLQQALFAPKLS---FPSSSRNVA-LISRVP---------STPISWRCTPLI--- 44
Query: 61 VKDSFVVRAEANEEA--EANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKP 118
K SF VRA++N E EA E + + V E E E + E K+PRKP
Sbjct: 45 AKPSFAVRADSNVEGAGEATEDVPSYNVDEVS---------EGEGEQVSDSEAPKSPRKP 95
Query: 119 RVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
RVKLGD+MGILN+RA+EASE +RP PDIRTGD+VEIKL
Sbjct: 96 RVKLGDVMGILNQRAIEASEKQRPTPDIRTGDIVEIKL 133
>gi|297790935|ref|XP_002863352.1| hypothetical protein ARALYDRAFT_494259 [Arabidopsis lyrata subsp.
lyrata]
gi|297309187|gb|EFH39611.1| hypothetical protein ARALYDRAFT_494259 [Arabidopsis lyrata subsp.
lyrata]
Length = 222
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 89/154 (57%), Gaps = 16/154 (10%)
Query: 3 SQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQVK 62
S +LPQALH IPR T SK LG S++L R +SVS N GF ++++ +
Sbjct: 5 SHLLPQALHMIPRIPT--FSSKNLGVSSILPRASSSKSRLSVSTNHSSSNFGFAIDSKKR 62
Query: 63 DSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKPRVKL 122
F+VRAE + E E +E +A V EEE + PRK RVKL
Sbjct: 63 REFIVRAEESTEGETEAVVENAVEAEAEAA--------------VAEEEARPPRKTRVKL 108
Query: 123 GDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
GDIMG+LNK+A+E +E+ RP+P +RTGD+VEIKL
Sbjct: 109 GDIMGLLNKKAIEVAENVRPVPGLRTGDIVEIKL 142
>gi|357482181|ref|XP_003611376.1| 50S ribosomal protein L19 [Medicago truncatula]
gi|217074044|gb|ACJ85382.1| unknown [Medicago truncatula]
gi|355512711|gb|AES94334.1| 50S ribosomal protein L19 [Medicago truncatula]
gi|388520743|gb|AFK48433.1| unknown [Medicago truncatula]
Length = 229
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 91/159 (57%), Gaps = 13/159 (8%)
Query: 1 MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQ 60
M SQVL QAL S QC PSK L F++ + F S + + + I +
Sbjct: 1 MASQVLLQALF----SPIQCPPSK-LCFTSSCTASTFGSRNLPLISTSISRRCSPLI--- 52
Query: 61 VKDSFVVRAEANEEA-EANESIEEEQNEAVQAQGDVVVAVEAES--EDKVEEEEVKAPRK 117
K SFVVRA++N +A A+++++E N D V E E + E EE K PR+
Sbjct: 53 AKPSFVVRADSNSDAVSASDNVDE--NPEASDNVDEVPETEGEQILDSASEVEESKPPRQ 110
Query: 118 PRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
RVKLGD+MGIL+KRA+ AS+ R PD+RTGD+VEI+L
Sbjct: 111 TRVKLGDVMGILHKRAIAASDEVRTTPDLRTGDIVEIRL 149
>gi|388502970|gb|AFK39551.1| unknown [Medicago truncatula]
Length = 229
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 91/159 (57%), Gaps = 13/159 (8%)
Query: 1 MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQ 60
M SQVL QAL S QC PSK L F++ + F S + + + I +
Sbjct: 1 MASQVLLQALF----SPIQCPPSK-LCFTSSCTASTFGSRNLPLISTSISRRCSPLI--- 52
Query: 61 VKDSFVVRAEANEEA-EANESIEEEQNEAVQAQGDVVVAVEAES--EDKVEEEEVKAPRK 117
K SFVVRA++N +A A+++++E N D V E E + E +E K PR+
Sbjct: 53 AKPSFVVRADSNSDAVSASDNVDE--NPEASDNVDEVPETEGEQILDSASEVDESKPPRQ 110
Query: 118 PRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
RVKLGD+MGIL+KRA+ AS+ R PD+RTGD+VEI+L
Sbjct: 111 TRVKLGDVMGILHKRAIAASDEVRTTPDLRTGDIVEIRL 149
>gi|89257423|gb|ABD64915.1| plastid ribosomal protein L19, putative [Brassica oleracea]
Length = 214
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 86/156 (55%), Gaps = 26/156 (16%)
Query: 2 GSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGW-NLGFFVNAQ 60
S +LPQALH IPR + SK LG S+ L R V +SVS G+ N ++++
Sbjct: 4 SSHLLPQALHMIPRIPNRS--SKSLGVSSFLPRASSVHSRISVSK---GFLNHSGAIDSR 58
Query: 61 VKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKPRV 120
+ F+ +AE + EA+A + E + V+ K P KPR
Sbjct: 59 KRREFIAKAEESTEADAEDVAETVEAAEVEEA--------------------KPPWKPRT 98
Query: 121 KLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
KLGD+MGILN++A+E SE RP+P+IRTGD+VEIKL
Sbjct: 99 KLGDVMGILNQKAIEVSEKVRPVPEIRTGDIVEIKL 134
>gi|2245114|emb|CAB10536.1| hypothetical protein [Arabidopsis thaliana]
gi|7268508|emb|CAB78759.1| hypothetical protein [Arabidopsis thaliana]
Length = 156
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 87/152 (57%), Gaps = 27/152 (17%)
Query: 50 GWNLGFFVNAQVKDSFVVRAE-ANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVE 108
G GF ++ +V++ F+VRAE N EAE+ E VA A++E VE
Sbjct: 16 GSKFGFSLDTRVRNEFIVRAEEGNTEAESEE----------------FVAEIADTEGNVE 59
Query: 109 EE-EVKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLFL------KIG 161
E E K RKPR+KLGD+MGILN++A+E +E RP+P+IRTGD+VEIKL L K G
Sbjct: 60 EVVEAKPTRKPRIKLGDVMGILNQKAIEVAEKVRPVPEIRTGDIVEIKLILSQHQRDKSG 119
Query: 162 VG--CPFTKVLLCQGKMLGSTLQFEFGGLLLA 191
+K LL +G+ S++ F+ + A
Sbjct: 120 ESQESKKSKALLSEGQA-SSSVHFQVNTIHRA 150
>gi|75107094|sp|P82413.2|RK19_SPIOL RecName: Full=50S ribosomal protein L19, chloroplastic; AltName:
Full=CL19; Flags: Precursor
gi|189096140|pdb|3BBO|R Chain R, Homology Model For The Spinach Chloroplast 50s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
gi|7582403|gb|AAF64312.1|AF250384_1 plastid ribosomal protein L19 precursor [Spinacia oleracea]
Length = 233
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 97/166 (58%), Gaps = 23/166 (13%)
Query: 1 MGSQVLPQALHWIPRS-STQCIP-SKRLGFSTVLSRGPFVSHGVS-------VSAKPIGW 51
M S+VLPQAL IP + S QC P K+LGF +R +S S+
Sbjct: 1 MASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSS 60
Query: 52 NLGFFVNAQVKDSFVVRAEANEEAEA-NESIEEEQNEAVQAQGDVVVAVEAESEDKVEEE 110
N + ++SFVVR+EA + ++A ES+ AV A+ ++ V EAE+E++
Sbjct: 61 NFSSIFSFPARNSFVVRSEAEDSSDAPAESV------AVVAEEELPVESEAEAEER---- 110
Query: 111 EVKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
PR+ RVKLGDIMGILNK+AV A+E RP+P IRTGD+V+I+L
Sbjct: 111 ---PPRQQRVKLGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRL 153
>gi|116785916|gb|ABK23906.1| unknown [Picea sitchensis]
Length = 234
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 64/97 (65%), Gaps = 10/97 (10%)
Query: 63 DSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAP-RKPRVK 121
+F+V A++ + +E QNE VA ES +V EE+ K P RKPR+K
Sbjct: 69 SNFIVHAQSVDAVSESEEEGGTQNE---------VASSDESTLEVSEEQPKLPSRKPRIK 119
Query: 122 LGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLFL 158
LG IMGIL+K+A+EA+E ERP PD+RTGDVVE+++++
Sbjct: 120 LGQIMGILHKQAIEATEKERPTPDVRTGDVVELRVYV 156
>gi|193872626|gb|ACF23041.1| ST10 [Eutrema halophilum]
Length = 136
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/53 (67%), Positives = 44/53 (83%)
Query: 104 EDKVEEEEVKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
E+ VE E K RKPR+KLGD+MGILN+RA+E SE RP+P+IRTGD+VEIKL
Sbjct: 4 EEVVETGEAKPARKPRIKLGDVMGILNQRAIEVSEKVRPVPEIRTGDIVEIKL 56
>gi|195623248|gb|ACG33454.1| 50S ribosomal protein L19 [Zea mays]
Length = 213
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 57/93 (61%), Gaps = 10/93 (10%)
Query: 65 FVVRAEANEEAEANESIE-EEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKPRVKLG 123
+ RA+A+ EA E + +++E A+G V VA E EE P KP+VK G
Sbjct: 51 IIPRADASAEAGEPEPVTASDESEEEVAEGSVAVA---------EGEEPTPPSKPKVKFG 101
Query: 124 DIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
+I+GILNK+ +E +E + +PD+R GD++E+++
Sbjct: 102 EIIGILNKQFIEEAEKVKTVPDLRPGDIIELRM 134
>gi|226504706|ref|NP_001142106.1| ribosomal protein L19 [Zea mays]
gi|194707132|gb|ACF87650.1| unknown [Zea mays]
gi|413938035|gb|AFW72586.1| 50S ribosomal protein L19 [Zea mays]
Length = 213
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 10/93 (10%)
Query: 65 FVVRAEANEEAEANESIEEEQNEAVQAQ-GDVVVAVEAESEDKVEEEEVKAPRKPRVKLG 123
+ RA+A+ EA E + + G V VA E EE P KP+VK G
Sbjct: 51 IIPRADASAEAGEPEPVTTSAESEEEVAEGSVAVA---------EAEEPTPPSKPKVKFG 101
Query: 124 DIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
+I+GILNK+ +E +E + +PD+R GD++E+++
Sbjct: 102 EIIGILNKQFIEEAEKVKTVPDLRPGDIIELRM 134
>gi|326511509|dbj|BAJ91899.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 222
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 49/75 (65%), Gaps = 6/75 (8%)
Query: 85 QNEAVQAQGDVVVAVEAESEDKV---EEEEVKAPRKPRVKLGDIMGILNKRAVEASESER 141
+ E+V A D + E E+E V E+EE APR +K G+I+GILNK+ +E +E +
Sbjct: 72 EGESVVASAD---SEEGEAEGAVALAEDEEEPAPRPKPIKFGEIIGILNKQFIEEAEKVK 128
Query: 142 PIPDIRTGDVVEIKL 156
+PD++ GD++E+++
Sbjct: 129 VLPDLKPGDIIELRM 143
>gi|357136827|ref|XP_003570005.1| PREDICTED: 50S ribosomal protein L19, chloroplastic-like
[Brachypodium distachyon]
Length = 220
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 43/67 (64%), Gaps = 9/67 (13%)
Query: 90 QAQGDVVVAVEAESEDKVEEEEVKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTG 149
+A+G V VA EE + PRK +K G+I+GILNK+ +E +E + +PD+R G
Sbjct: 84 EAEGAVAVA---------EEVDEPPPRKKSIKFGEIIGILNKQFIEEAEKVKTLPDLRPG 134
Query: 150 DVVEIKL 156
D++E+++
Sbjct: 135 DIIELRM 141
>gi|14140122|emb|CAC39039.1| putative plastid ribosomal protein L19 precursor [Oryza sativa]
Length = 233
Score = 43.5 bits (101), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 29/36 (80%)
Query: 121 KLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
K G+I+GILNK+ +E +E + +PD+R GD++E+++
Sbjct: 119 KFGEIIGILNKQFIEEAEKVKTLPDLRPGDIIELRM 154
>gi|218191279|gb|EEC73706.1| hypothetical protein OsI_08304 [Oryza sativa Indica Group]
Length = 430
Score = 43.5 bits (101), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 29/36 (80%)
Query: 121 KLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
K G+I+GILNK+ +E +E + +PD+R GD++E+++
Sbjct: 119 KFGEIIGILNKQFIEEAEKVKTLPDLRPGDIIELRM 154
>gi|297721473|ref|NP_001173099.1| Os02g0652600 [Oryza sativa Japonica Group]
gi|49387511|dbj|BAD24976.1| putative plastid ribosomal protein L19 precursor [Oryza sativa
Japonica Group]
gi|215679028|dbj|BAG96458.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686914|dbj|BAG90784.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255671137|dbj|BAH91828.1| Os02g0652600 [Oryza sativa Japonica Group]
Length = 234
Score = 43.5 bits (101), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 29/36 (80%)
Query: 121 KLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
K G+I+GILNK+ +E +E + +PD+R GD++E+++
Sbjct: 120 KFGEIIGILNKQFIEEAEKVKTLPDLRPGDIIELRM 155
>gi|149390837|gb|ABR25436.1| 50S ribosomal protein l19 [Oryza sativa Indica Group]
Length = 187
Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 29/36 (80%)
Query: 121 KLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
K G+I+GILNK+ +E +E + +PD+R GD++E+++
Sbjct: 73 KFGEIIGILNKQFIEEAEKVKTLPDLRPGDIIELRM 108
>gi|222623356|gb|EEE57488.1| hypothetical protein OsJ_07762 [Oryza sativa Japonica Group]
Length = 554
Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 29/36 (80%)
Query: 121 KLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
K G+I+GILNK+ +E +E + +PD+R GD++E+++
Sbjct: 120 KFGEIIGILNKQFIEEAEKVKTLPDLRPGDIIELRM 155
>gi|413941640|gb|AFW74289.1| hypothetical protein ZEAMMB73_091168 [Zea mays]
Length = 216
Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 99 VEAESEDKVEEEEVKAPR----KPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEI 154
V ++S+D PR +P IM ILNK AVE SER IPD++ G ++++
Sbjct: 141 VASDSDDSTSPAVEHPPRIKFKRPDKTARHIMNILNKEAVEKVRSERAIPDVQPGCIIQM 200
Query: 155 KLFLKI 160
+L + +
Sbjct: 201 RLVIPL 206
>gi|242063064|ref|XP_002452821.1| hypothetical protein SORBIDRAFT_04g033210 [Sorghum bicolor]
gi|241932652|gb|EES05797.1| hypothetical protein SORBIDRAFT_04g033210 [Sorghum bicolor]
Length = 221
Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 28/35 (80%)
Query: 122 LGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
G+I+GILNK+ +E +E + +PD+R GD++E+++
Sbjct: 108 FGEIIGILNKQFIEEAEKVKTVPDLRPGDIIELRM 142
>gi|168002022|ref|XP_001753713.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695120|gb|EDQ81465.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 418
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 5/62 (8%)
Query: 100 EAESEDKVEEEEVKAPRKPRVK-----LGDIMGILNKRAVEASESERPIPDIRTGDVVEI 154
EA++ +E E P KP+ K + IM L++ AV+A+ E+ IPDIR GDV+++
Sbjct: 278 EADAPAVLEAAEEAPPAKPKSKKLTKGVKHIMQYLDEEAVKAANEEKVIPDIRPGDVIQL 337
Query: 155 KL 156
++
Sbjct: 338 RV 339
>gi|413941641|gb|AFW74290.1| hypothetical protein ZEAMMB73_091168 [Zea mays]
Length = 280
Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 99 VEAESEDKVEEEEVKAPR----KPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEI 154
V ++S+D PR +P IM ILNK AVE SER IPD++ G ++++
Sbjct: 141 VASDSDDSTSPAVEHPPRIKFKRPDKTARHIMNILNKEAVEKVRSERAIPDVQPGCIIQM 200
Query: 155 KL 156
+L
Sbjct: 201 RL 202
>gi|168005046|ref|XP_001755222.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693815|gb|EDQ80166.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 232
Score = 40.8 bits (94), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 121 KLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
++ IM IL+K AVE + E+ IPDIR GDVV++++
Sbjct: 118 RVKHIMEILDKEAVEVANKEKSIPDIRPGDVVQLRV 153
>gi|326509809|dbj|BAJ87120.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326520856|dbj|BAJ92791.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 217
Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 10/64 (15%)
Query: 103 SEDKVEEEEVKAP---RKPRVKLG-------DIMGILNKRAVEASESERPIPDIRTGDVV 152
+E VE+E+ +P PR+K IM ILNK AV+ +ER IPD++ G +V
Sbjct: 76 AEVSVEDEDSSSPMVEHPPRIKFKRPDKTARHIMNILNKEAVDKVRTERTIPDVQPGCIV 135
Query: 153 EIKL 156
+++L
Sbjct: 136 QMRL 139
>gi|115444931|ref|NP_001046245.1| Os02g0205000 [Oryza sativa Japonica Group]
gi|46390526|dbj|BAD16014.1| putative plastid ribosomal protein L19 precursor [Oryza sativa
Japonica Group]
gi|51536266|dbj|BAD38434.1| putative plastid ribosomal protein L19 precursor [Oryza sativa
Japonica Group]
gi|113535776|dbj|BAF08159.1| Os02g0205000 [Oryza sativa Japonica Group]
gi|125538542|gb|EAY84937.1| hypothetical protein OsI_06303 [Oryza sativa Indica Group]
gi|125581228|gb|EAZ22159.1| hypothetical protein OsJ_05821 [Oryza sativa Japonica Group]
gi|215707036|dbj|BAG93496.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765566|dbj|BAG87263.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 222
Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 93 GDVVVAVEAESEDK--VEEEEVKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGD 150
G V+VE ES D VE ++P IM ILNK AV+ ER IPD++ G
Sbjct: 79 GSAEVSVEEESSDSPGVEHPPRIKFKRPDKTARHIMNILNKEAVDKVRGEREIPDVQPGC 138
Query: 151 VVEIKL 156
+++++L
Sbjct: 139 IIQMRL 144
>gi|293333100|ref|NP_001168135.1| uncharacterized protein LOC100381882 [Zea mays]
gi|223946231|gb|ACN27199.1| unknown [Zea mays]
gi|413921488|gb|AFW61420.1| hypothetical protein ZEAMMB73_090575 [Zea mays]
Length = 238
Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 99 VEAESEDKVEEEEVKAPR----KPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEI 154
V ++S+D PR +P IM ILNK AVE SER IPD++ G ++++
Sbjct: 99 VASDSDDSTSPAVEHPPRIKFKRPDKTARHIMNILNKEAVEKVRSEREIPDVQPGCIIQM 158
Query: 155 KL 156
+L
Sbjct: 159 RL 160
>gi|302839499|ref|XP_002951306.1| mitochondrial ribosomal protein L19 [Volvox carteri f. nagariensis]
gi|300263281|gb|EFJ47482.1| mitochondrial ribosomal protein L19 [Volvox carteri f. nagariensis]
Length = 193
Score = 39.7 bits (91), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 119 RVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLFL 158
R ++G +M IL + E RP+PD R GD++E+++ L
Sbjct: 68 RKRMGFLMQILEREQTERIRRARPLPDFRAGDILEVRMML 107
>gi|384253538|gb|EIE27013.1| hypothetical protein COCSUDRAFT_83572 [Coccomyxa subellipsoidea
C-169]
Length = 175
Score = 38.9 bits (89), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 118 PRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLFLKIGVGCPFTKVLLCQGK 175
PR ++G ++ +L + A + + SE+ PD + GD++E+KL + G P T LC K
Sbjct: 58 PR-RMGHLIQVLEQEAADKAASEKKFPDFQPGDILELKLVVPENKGRPATVKGLCIAK 114
>gi|413938036|gb|AFW72587.1| hypothetical protein ZEAMMB73_722020 [Zea mays]
Length = 205
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 18/93 (19%)
Query: 65 FVVRAEANEEAEANESIEEEQNEAVQAQ-GDVVVAVEAESEDKVEEEEVKAPRKPRVKLG 123
+ RA+A+ EA E + + G V VA E EE P KP+
Sbjct: 51 IIPRADASAEAGEPEPVTTSAESEEEVAEGSVAVA---------EAEEPTPPSKPK---- 97
Query: 124 DIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
ILNK+ +E +E + +PD+R GD++E+++
Sbjct: 98 ----ILNKQFIEEAEKVKTVPDLRPGDIIELRM 126
>gi|284991246|ref|YP_003409800.1| 6-phosphofructokinase [Geodermatophilus obscurus DSM 43160]
gi|284064491|gb|ADB75429.1| 6-phosphofructokinase [Geodermatophilus obscurus DSM 43160]
Length = 440
Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 17/157 (10%)
Query: 1 MGSQVLPQALHWIPRSSTQCIP--SKRLGFSTVLSRGPFVSHGVSVSA----------KP 48
+G + L A+ IP++ IP + GF T ++ H SV A K
Sbjct: 193 VGERGLKVAVVGIPKTIDNDIPYIDQSFGFQTAMAEATKSIHAASVEARSAPGGIGLVKL 252
Query: 49 IGWNLGFFVN----AQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAV-EAES 103
+G + GF A+ +V+ E + + E + VQ +G VV V E
Sbjct: 253 MGRHSGFIACYATLAKDDADYVLIPEVPFALDGERGLLEHLRQRVQERGHAVVVVAEGAG 312
Query: 104 EDKVEEEEVKAPRKPRVKLGDIMGILNKRAVEASESE 140
++ +E EE V+ GDI +L KR VE ++
Sbjct: 313 QEYIEGEEPGRDASGNVRFGDIGRLLRKRIVEHLDAH 349
>gi|350539303|ref|NP_001234386.1| L19 ribosomal protein-like [Solanum lycopersicum]
gi|83630759|gb|ABC26877.1| putative L19 ribosomal protein [Solanum lycopersicum]
Length = 250
Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 84 EQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKPRVKLG-------DIMGILNKRAVEA 136
+ N AV + +A A S + V E+ A PR+K IM IL+K AVE
Sbjct: 93 QYNAAVPSFPRRFIATGATSVNMVSED-ASALATPRIKFKRLDKTAKHIMQILDKEAVEE 151
Query: 137 SESERPIPDIRTGDVVEIKL 156
++ IPDI+ G ++++KL
Sbjct: 152 VRAQNEIPDIKPGYIIQLKL 171
>gi|357123973|ref|XP_003563681.1| PREDICTED: 50S ribosomal protein L19, chloroplastic-like
[Brachypodium distachyon]
Length = 217
Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 10/64 (15%)
Query: 103 SEDKVEEEEVKAP---RKPRVKLG-------DIMGILNKRAVEASESERPIPDIRTGDVV 152
+E +E+E +P PR+K IM ILNK AV+ +ER IPDI+ G +V
Sbjct: 76 AEVSLEDENSSSPMAEHPPRIKFKRPDKTARHIMNILNKEAVDKVRTERVIPDIQPGCIV 135
Query: 153 EIKL 156
++++
Sbjct: 136 QMRV 139
>gi|242080279|ref|XP_002444908.1| hypothetical protein SORBIDRAFT_07g001190 [Sorghum bicolor]
gi|241941258|gb|EES14403.1| hypothetical protein SORBIDRAFT_07g001190 [Sorghum bicolor]
Length = 236
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 99 VEAESEDKVEEEEVKAPR----KPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEI 154
V ++S+D PR +P IM ILNK AV+ SER IPD++ G ++++
Sbjct: 97 VASDSDDSTSLAVEHPPRIKFKRPDKTARHIMNILNKEAVDKVRSEREIPDVQPGCMIQM 156
Query: 155 KL 156
+L
Sbjct: 157 RL 158
>gi|146416571|ref|XP_001484255.1| hypothetical protein PGUG_03636 [Meyerozyma guilliermondii ATCC
6260]
Length = 769
Score = 37.7 bits (86), Expect = 2.5, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 34 RGPFVSHGVSVSAKPIGWNLGFFVNAQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQ 92
RG ++ GVS+ +P G L F+N + K+ + + E EEA + ++++Q A A+
Sbjct: 643 RGKLINLGVSLDDRPNGGALVKFLNNEEKEELIKQQEQKEEAARQKELKKQQQAAANAK 701
>gi|190347294|gb|EDK39538.2| hypothetical protein PGUG_03636 [Meyerozyma guilliermondii ATCC
6260]
Length = 769
Score = 37.7 bits (86), Expect = 2.6, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 34 RGPFVSHGVSVSAKPIGWNLGFFVNAQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQ 92
RG ++ GVS+ +P G L F+N + K+ + + E EEA + ++++Q A A+
Sbjct: 643 RGKLINLGVSLDDRPNGGALVKFLNNEEKEELIKQQEQKEEAARQKELKKQQQAAANAK 701
>gi|291535561|emb|CBL08673.1| Alpha-glucosidases, family 31 of glycosyl hydrolases [Roseburia
intestinalis M50/1]
Length = 747
Score = 37.4 bits (85), Expect = 2.9, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 55 FFVNAQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKA 114
F ++ KD ++ A+ E + + + +E ++++G V A E E ED V + +
Sbjct: 84 FLIDFYKKDGTLLCADFRGERKKKKKLSDEALATLESEGHAVSA-EGEKEDPVMVVKQMS 142
Query: 115 PRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGD 150
+ LGD G+LNKR E +P T D
Sbjct: 143 GDEKFYGLGDKTGVLNKRNYEYENWNSDLPQAHTDD 178
>gi|257413398|ref|ZP_04742928.2| alpha-glucosidase [Roseburia intestinalis L1-82]
gi|257203670|gb|EEV01955.1| alpha-glucosidase [Roseburia intestinalis L1-82]
Length = 751
Score = 37.4 bits (85), Expect = 2.9, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 55 FFVNAQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKA 114
F ++ KD ++ A+ E + + + +E ++++G V A E E ED V + +
Sbjct: 88 FLIDFYKKDGTLLCADFRGERKKKKKLSDEALATLESEGHAVSA-EGEKEDPVMVVKQMS 146
Query: 115 PRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGD 150
+ LGD G+LNKR E +P T D
Sbjct: 147 GDEKFYGLGDKTGVLNKRNYEYENWNSDLPQAHTDD 182
>gi|160938977|ref|ZP_02086328.1| hypothetical protein CLOBOL_03871 [Clostridium bolteae ATCC
BAA-613]
gi|158437940|gb|EDP15700.1| hypothetical protein CLOBOL_03871 [Clostridium bolteae ATCC
BAA-613]
Length = 997
Score = 37.4 bits (85), Expect = 2.9, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 59 AQVKDSFVVRAEANEEAE---ANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAP 115
+ KD V A + E N EEQ A++ + V+A EAE ++ EE+ KA
Sbjct: 66 GETKDKLDVLKTAEAQVEQQFKNGEASEEQYRAIKRE---VIATEAELKNL--EEQAKAS 120
Query: 116 RKPRVKLGDIMGILNKRAVEASESERPI 143
K+GD G + +A +A E P+
Sbjct: 121 NSTLAKVGDAFGTVGDKATKAGEKMMPV 148
>gi|159485660|ref|XP_001700862.1| mitochondrial ribosomal protein L19 [Chlamydomonas reinhardtii]
gi|158281361|gb|EDP07116.1| mitochondrial ribosomal protein L19 [Chlamydomonas reinhardtii]
Length = 312
Score = 36.6 bits (83), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 26/38 (68%)
Query: 121 KLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLFL 158
++G +M +L + +E + RP+P+ R GDV+E+++ +
Sbjct: 187 RMGFLMHVLEREQMERVRAARPLPEFRAGDVLEVRMMV 224
>gi|239625909|ref|ZP_04668940.1| tail tape measure protein [Clostridiales bacterium 1_7_47_FAA]
gi|239520139|gb|EEQ60005.1| tail tape measure protein [Clostridiales bacterium 1_7_47FAA]
Length = 979
Score = 36.2 bits (82), Expect = 6.7, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
Query: 59 AQVKDSFVVRAEANEEAE---ANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAP 115
+ KD V A + E N EEQ A++ + + E+E K EE+ KA
Sbjct: 48 GETKDKLDVLKTAEAQVEQQFKNGEASEEQYRAIKRE-----VIATETELKNLEEQAKAS 102
Query: 116 RKPRVKLGDIMGILNKRAVEASESERPI 143
K+GD G + +A +A E P+
Sbjct: 103 NSTLAKVGDAFGTVGDKATKAGEKMMPV 130
>gi|402877533|ref|XP_003902479.1| PREDICTED: retinitis pigmentosa 1-like 1 protein [Papio anubis]
Length = 2498
Score = 35.8 bits (81), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 11/84 (13%)
Query: 67 VRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEE-EVKAPRK--PRVKLG 123
EA E+E E++E +E Q + +VV A+EAE E + E E E + +K P+V LG
Sbjct: 2299 AEGEAQPESEGVEALE--ADEEAQPESEVVEALEAEGEAQPESEGETQGEKKGSPQVSLG 2356
Query: 124 DIMGILNKRAVEASESERPIPDIR 147
D ++V ASES P+P R
Sbjct: 2357 D------GQSVGASESNSPVPKDR 2374
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.134 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,672,792,287
Number of Sequences: 23463169
Number of extensions: 98870723
Number of successful extensions: 655818
Number of sequences better than 100.0: 531
Number of HSP's better than 100.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 333
Number of HSP's that attempted gapping in prelim test: 650213
Number of HSP's gapped (non-prelim): 4847
length of query: 191
length of database: 8,064,228,071
effective HSP length: 134
effective length of query: 57
effective length of database: 9,215,130,721
effective search space: 525262451097
effective search space used: 525262451097
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 72 (32.3 bits)