BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029551
(191 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W463|RK191_ARATH 50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana
GN=At4g17560 PE=2 SV=1
Length = 225
Score = 123 bits (309), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 76/161 (47%), Positives = 99/161 (61%), Gaps = 23/161 (14%)
Query: 1 MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPI---GWNLGFFV 57
M LPQALH IPR+ TQ SK LGFS+ LS P + +SVS + G GF +
Sbjct: 3 MSFHRLPQALHMIPRNPTQS--SKNLGFSSFLSCAPSMDSRISVSRLSLNHPGSKFGFSL 60
Query: 58 NAQVKDSFVVRAE-ANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEE-EVKAP 115
+ +V++ F+VRAE N EAE+ E VA A++E VEE E K
Sbjct: 61 DTRVRNEFIVRAEEGNTEAESEE----------------FVAEIADTEGNVEEVVEAKPT 104
Query: 116 RKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
RKPR+KLGD+MGILN++A+E +E RP+P+IRTGD+VEIKL
Sbjct: 105 RKPRIKLGDVMGILNQKAIEVAEKVRPVPEIRTGDIVEIKL 145
>sp|Q8RXX5|RK192_ARATH 50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana
GN=At5g47190 PE=2 SV=1
Length = 229
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 93/158 (58%), Gaps = 15/158 (9%)
Query: 2 GSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGW---NLGFFVN 58
S +LPQALH IPR T SK LG S++L R V+ +SVS + N GF ++
Sbjct: 4 SSHLLPQALHMIPR--TPSFSSKNLGVSSILPRASSVNSRLSVSRVFLNHSSSNFGFAID 61
Query: 59 AQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKP 118
++ + F+ +AE + E E EAV + V E E E V EE K P K
Sbjct: 62 SKKRKEFIAKAEESTEGET---------EAV-VENAVETEAEGEGEATVAAEEAKPPWKT 111
Query: 119 RVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
RVKLGDIMG+LNK+A+E +E+ RP+P +RTGD+VEIKL
Sbjct: 112 RVKLGDIMGLLNKKAIEVAETVRPVPGLRTGDIVEIKL 149
>sp|P82413|RK19_SPIOL 50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea
GN=RPL19 PE=1 SV=2
Length = 233
Score = 90.5 bits (223), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/166 (42%), Positives = 97/166 (58%), Gaps = 23/166 (13%)
Query: 1 MGSQVLPQALHWIPRS-STQCIP-SKRLGFSTVLSRGPFVSHGVS-------VSAKPIGW 51
M S+VLPQAL IP + S QC P K+LGF +R +S S+
Sbjct: 1 MASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSS 60
Query: 52 NLGFFVNAQVKDSFVVRAEANEEAEA-NESIEEEQNEAVQAQGDVVVAVEAESEDKVEEE 110
N + ++SFVVR+EA + ++A ES+ AV A+ ++ V EAE+E++
Sbjct: 61 NFSSIFSFPARNSFVVRSEAEDSSDAPAESV------AVVAEEELPVESEAEAEER---- 110
Query: 111 EVKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGDVVEIKL 156
PR+ RVKLGDIMGILNK+AV A+E RP+P IRTGD+V+I+L
Sbjct: 111 ---PPRQQRVKLGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRL 153
>sp|Q54JR2|ABCC3_DICDI ABC transporter C family member 3 OS=Dictyostelium discoideum
GN=abcC3 PE=3 SV=1
Length = 1412
Score = 33.9 bits (76), Expect = 0.66, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 29/143 (20%)
Query: 1 MGSQVLPQALHWIPRSSTQCIPSKRLGFSTVLSRGPFVSHGVSVSAKPIGWNLGF--FVN 58
+G + + I +S T + + +L + PF + V + A I + +N
Sbjct: 598 VGKHLFHRCFKGILKSKTVILAANQLNYL------PFAHNTVVLKAGEISERGSYQQLIN 651
Query: 59 AQVKDSFVVRAEANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKP 118
AQ + S +++A +E+ NE +E+++ +E ES++ V EE+ K KP
Sbjct: 652 AQKEFSGLLQAYGVDESAVNEDVEDDKE------------IE-ESDNIVVEEKTKPTEKP 698
Query: 119 RVKLGDIMGILNKRAVEASESER 141
+++ NK V S+ ER
Sbjct: 699 KLQ--------NKDGVLTSQEER 713
>sp|Q32PZ9|CC130_RAT Coiled-coil domain-containing protein 130 OS=Rattus norvegicus
GN=Ccdc130 PE=2 SV=1
Length = 385
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 10/77 (12%)
Query: 29 STVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQVKDSFVVRAEANEEAEANESIEEEQNEA 88
ST+ P +SH + W F +N+ ++ F + +A +E EEE+++A
Sbjct: 157 STLKKALPTLSH---IQEAQNAWKDDFALNSMLRRHFREKKKAMQE-------EEEKDQA 206
Query: 89 VQAQGDVVVAVEAESED 105
+QA+ ++ + + ESED
Sbjct: 207 LQAKANLAIPLVPESED 223
>sp|Q9D516|CC130_MOUSE Coiled-coil domain-containing protein 130 OS=Mus musculus
GN=Ccdc130 PE=2 SV=1
Length = 385
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 10/77 (12%)
Query: 29 STVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQVKDSFVVRAEANEEAEANESIEEEQNEA 88
ST+ P +SH + W F +N+ ++ F + +A +E EEE+++A
Sbjct: 157 STLKKALPTLSH---IQEAQNAWKDDFALNSMLRRHFREKKKAMQE-------EEEKDQA 206
Query: 89 VQAQGDVVVAVEAESED 105
+QA+ + + + ESED
Sbjct: 207 LQAKASLAIPLVPESED 223
>sp|Q5EA37|CC130_BOVIN Coiled-coil domain-containing protein 130 OS=Bos taurus GN=CCDC130
PE=2 SV=1
Length = 400
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 10/77 (12%)
Query: 29 STVLSRGPFVSHGVSVSAKPIGWNLGFFVNAQVKDSFVVRAEANEEAEANESIEEEQNEA 88
ST+ P +SH + W F +N+ ++ F + +A +E EEE+++A
Sbjct: 157 STLKKALPTLSH---IQEAQSAWKDDFALNSMLRKRFREKKKAMQE-------EEERDQA 206
Query: 89 VQAQGDVVVAVEAESED 105
+QA+ + + + E+ED
Sbjct: 207 LQAKASLAIPLVPETED 223
>sp|P29616|MYSC_CHICK Myosin heavy chain, cardiac muscle isoform (Fragment) OS=Gallus
gallus PE=1 SV=1
Length = 1102
Score = 31.2 bits (69), Expect = 4.6, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 59 AQVKDSFVVRAEANEEAEAN-ESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEE 111
A +K+ F+ EA E++EA + +EE+Q VQ + D+++ ++AE + + EE
Sbjct: 16 ANMKEEFLKLKEALEKSEARRKELEEKQVSLVQEKNDLLLQLQAEQDTLADAEE 69
>sp|Q96EQ9|PRDM9_MOUSE Histone-lysine N-methyltransferase PRDM9 OS=Mus musculus GN=Prdm9
PE=1 SV=2
Length = 843
Score = 30.4 bits (67), Expect = 6.9, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 99 VEAESEDKVEEEEVKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTG 149
V++++++ EVK KPR ++ K + + ES+R + ++RTG
Sbjct: 440 VDSQNKNDKASNEVKRKSKPRQRISTTFPSTLKEQMRSEESKRTVEELRTG 490
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.134 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,690,121
Number of Sequences: 539616
Number of extensions: 2482509
Number of successful extensions: 16861
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 191
Number of HSP's that attempted gapping in prelim test: 15573
Number of HSP's gapped (non-prelim): 1090
length of query: 191
length of database: 191,569,459
effective HSP length: 111
effective length of query: 80
effective length of database: 131,672,083
effective search space: 10533766640
effective search space used: 10533766640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)