Query 029551
Match_columns 191
No_of_seqs 35 out of 37
Neff 2.6
Searched_HMMs 29240
Date Tue Mar 26 00:22:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029551.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029551hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_R Ribosomal protein L19; 100.0 3.8E-42 1.3E-46 293.5 -2.1 170 1-183 1-183 (233)
2 2zjr_M 50S ribosomal protein L 99.2 1.2E-11 4E-16 101.6 3.4 60 124-184 6-69 (166)
3 3r8s_P 50S ribosomal protein L 99.1 2.5E-11 8.4E-16 94.5 4.4 55 124-183 2-60 (114)
4 3v2d_T 50S ribosomal protein L 99.1 8.8E-11 3E-15 94.9 5.5 57 122-183 3-63 (146)
5 2ftc_K 39S ribosomal protein L 98.9 9.6E-10 3.3E-14 83.5 5.2 42 143-184 1-45 (98)
6 3d6x_A (3R)-hydroxymyristoyl-[ 71.4 5.1 0.00017 29.0 4.3 29 144-172 99-127 (146)
7 2lkt_A Retinoic acid receptor 66.0 6.9 0.00024 28.5 4.0 29 141-176 3-31 (125)
8 2gll_A FABZ, (3R)-hydroxymyris 65.9 8.2 0.00028 29.6 4.6 32 141-172 120-151 (171)
9 2f41_A Transcription factor FA 61.5 14 0.00049 26.0 4.9 42 119-160 37-87 (121)
10 3bbo_R Ribosomal protein L19; 57.9 2.1 7.3E-05 36.9 0.0 10 119-128 142-151 (233)
11 1u1z_A (3R)-hydroxymyristoyl-[ 54.3 15 0.00052 27.8 4.3 25 140-164 115-139 (168)
12 3esi_A Uncharacterized protein 51.8 10 0.00034 29.0 2.9 27 138-164 70-96 (129)
13 4i83_A 3-hydroxyacyl-[acyl-car 51.1 19 0.00064 26.8 4.3 21 145-165 106-126 (152)
14 2kbn_A Conserved protein; nucl 49.7 14 0.00047 26.7 3.2 27 142-168 57-84 (109)
15 4h4g_A (3R)-hydroxymyristoyl-[ 49.2 20 0.00069 27.5 4.3 27 143-169 108-134 (160)
16 2k9k_A TONB2; metal transport; 48.7 11 0.00039 26.3 2.6 33 127-159 66-99 (106)
17 3hu3_A Transitional endoplasmi 47.1 24 0.00083 31.4 5.0 29 127-167 39-67 (489)
18 1z6b_A Pffabz, fatty acid synt 46.6 26 0.0009 25.6 4.4 24 141-164 102-125 (154)
19 3tiw_A Transitional endoplasmi 46.0 30 0.001 27.7 5.0 28 128-167 40-67 (187)
20 3bnv_A CJ0977; virulence facto 45.1 29 0.001 25.9 4.5 50 118-167 63-122 (152)
21 2f3x_A Transcription factor FA 44.9 24 0.00083 26.7 4.1 46 117-162 71-125 (157)
22 3qwz_A Transitional endoplasmi 42.9 34 0.0012 28.0 4.9 27 129-167 44-70 (211)
23 3lzk_A Fumarylacetoacetate hyd 41.9 25 0.00085 31.0 4.2 32 130-161 310-342 (359)
24 3k67_A Putative dehydratase AF 38.5 37 0.0013 25.9 4.3 34 141-174 111-144 (159)
25 2nsc_A Trigger factor, TF; cha 37.3 21 0.00072 25.8 2.6 19 132-150 30-48 (109)
26 1cz4_A VCP-like ATPase; double 35.0 25 0.00086 27.9 2.9 25 128-164 25-49 (185)
27 2hc8_A PACS, cation-transporti 34.3 13 0.00045 27.1 1.1 27 141-171 25-51 (113)
28 1ixl_A Hypothetical protein PH 33.0 53 0.0018 22.7 4.0 24 144-167 79-102 (131)
29 4ayb_H DNA-directed RNA polyme 31.6 23 0.00079 25.7 2.0 11 145-155 56-66 (84)
30 1p9y_A Trigger factor, TF; alp 30.7 31 0.001 25.4 2.6 23 127-150 29-51 (121)
31 2d3o_1 Trigger factor, TF; rib 30.5 25 0.00086 25.4 2.0 19 132-150 29-47 (112)
32 1iq6_A (R)-hydratase, (R)-spec 28.0 74 0.0025 21.7 4.0 20 143-162 85-104 (134)
33 1q1s_A Large T antigen; import 27.7 19 0.00066 21.8 0.8 12 109-120 11-22 (26)
34 2kij_A Copper-transporting ATP 27.1 18 0.0006 26.7 0.7 14 142-155 38-51 (124)
35 3d0f_A Penicillin-binding 1 tr 26.6 28 0.00096 24.7 1.7 10 146-155 84-93 (106)
36 3kd4_A Putative protease; stru 26.6 38 0.0013 30.3 2.8 19 141-159 101-119 (506)
37 2b3n_A Hypothetical protein AF 25.5 84 0.0029 23.6 4.3 32 141-172 111-142 (159)
38 1so2_A CGMP-inhibited 3',5'-cy 25.0 25 0.00085 31.6 1.4 24 108-131 389-414 (420)
39 3cnr_A Type IV fimbriae assemb 24.5 52 0.0018 24.6 2.9 29 145-173 41-70 (117)
40 3lo8_A Ferredoxin--NADP reduct 24.3 76 0.0026 25.3 4.0 33 146-180 136-173 (311)
41 3e0e_A Replication protein A; 24.1 79 0.0027 22.1 3.7 20 145-164 63-82 (97)
42 3ir3_A HTD2, 3-hydroxyacyl-thi 23.7 90 0.0031 22.7 4.0 24 141-164 93-116 (148)
43 3d6l_A Putative hydrolase; hot 23.2 1.2E+02 0.0043 20.6 4.5 26 143-168 60-85 (137)
44 4dpz_X HRAS-like suppressor 2; 22.8 91 0.0031 24.1 4.0 25 143-174 5-29 (137)
45 2r6h_A NADH:ubiquinone oxidore 22.7 99 0.0034 24.1 4.3 32 146-179 135-168 (290)
46 1wlu_A PAAI protein, phenylace 22.5 1.4E+02 0.0046 20.6 4.6 26 145-170 73-98 (136)
47 2k75_A Uncharacterized protein 22.1 54 0.0018 23.5 2.5 20 146-165 60-80 (106)
48 2e6z_A Transcription elongatio 21.5 43 0.0015 22.1 1.7 12 144-155 6-17 (59)
49 2l66_A SSO7C4, transcriptional 21.2 57 0.002 20.7 2.2 13 145-157 25-37 (53)
50 1qzg_A Protection of telomeres 20.9 52 0.0018 26.9 2.4 17 139-155 93-110 (187)
51 2c2i_A RV0130; hotdog, hydrata 20.9 56 0.0019 23.2 2.3 23 140-162 94-116 (151)
52 2prx_A Thioesterase superfamil 20.8 97 0.0033 22.2 3.6 29 145-173 107-135 (160)
53 1hyo_A Fumarylacetoacetate hyd 20.7 1.1E+02 0.0037 27.5 4.6 29 144-174 384-412 (421)
54 3m7n_A Putative uncharacterize 20.5 14 0.00047 29.0 -1.1 34 125-158 91-124 (179)
No 1
>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=3.8e-42 Score=293.54 Aligned_cols=170 Identities=39% Similarity=0.528 Sum_probs=58.2
Q ss_pred CCccccccccccccCC-CCCCCC-CCceeccccccCC----CccccceeeeccCCCccccceecc----cccceeEEeec
Q 029551 1 MGSQVLPQALHWIPRS-STQCIP-SKRLGFSTVLSRG----PFVSHGVSVSAKPIGWNLGFFVNA----QVKDSFVVRAE 70 (191)
Q Consensus 1 Mas~vLPQAL~~iprs-p~q~~p-~k~LgfSS~~~r~----s~~~srlsls~~~~s~~~~~~~~~----~~k~~fVvrAe 70 (191)
||||+|||||+++||+ |.|||| +|+||||+.+.|. .+.++++++|+. +|++|||+|++ .+|++||+|||
T Consensus 1 m~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~s~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~f~~r~~ 79 (233)
T 3bbo_R 1 MASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRA-SSNLFSSNFSSIFSFPARNSFVVRSE 79 (233)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcccccchhhhccccccccCCCCChhhcccccccccccccccccccceEeecc-ccccccccccchhccccccceeEeec
Confidence 9999999999999997 457775 5999999766443 222335555554 57788888877 49999999999
Q ss_pred cchhhhcchhhHHHhHHHHhhccccchhhccccchhhhhhhcCCCCCCccchhhHHHHhhHHHHHHhhhcCCCCCCCCCc
Q 029551 71 ANEEAEANESIEEEQNEAVQAQGDVVVAVEAESEDKVEEEEVKAPRKPRVKLGDIMGILNKRAVEASESERPIPDIRTGD 150 (191)
Q Consensus 71 a~~ea~~~~~~~e~~~E~~~~~~d~v~~~Ege~~~v~eeeE~~~prkkrkk~g~IM~ILnkeavee~~~~R~iPdiRpGd 150 (191)
+++. ++++. ++.++|.++|+|.+..+|++| ++|+|+++|||++|++||+++|++....+.+|+|++||
T Consensus 80 ~~~~--~~~~~---------~~~~~~~e~~~~~~~~~~~~~-~~p~~~~~k~~~iM~~L~re~ie~~q~kkdiPeFr~GD 147 (233)
T 3bbo_R 80 AEDS--SDAPA---------ESVAVVAEEELPVESEAEAEE-RPPRQQRVKLGDIMGILNKKAVHAAEELRPVPGIRTGD 147 (233)
T ss_dssp -----------------------------------------------------CCSSSCSTTHHHHTTCCSCCSSSCCCS
T ss_pred cccC--CCCcc---------cchhhcccccchhhhhhcccc-CCCCcchhHHHHHHHHHHHHHHHHHhhccCCCccCCCC
Confidence 9542 22221 122334444454444444444 99999999999999999999999999999999999999
Q ss_pred EEEEEEeeecCCCCcceeeEEEee---ccCCceeEE
Q 029551 151 VVEIKLFLKIGVGCPFTKVLLCQG---KMLGSTLQF 183 (191)
Q Consensus 151 IVelklEVPEnkRR~~t~~~ic~~---~glgstf~~ 183 (191)
+|+|.+.++|||.|.+.|.||||+ +|+++|||.
T Consensus 148 tV~V~vkI~E~KeRiQ~FeGVVIarr~~Gl~sTFTV 183 (233)
T 3bbo_R 148 IVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRI 183 (233)
T ss_dssp CCCCCCCBCCCSSCCSCCBCCCCCSCBCCCSSSCBC
T ss_pred EEEEEEEeccCcceecceEEEEEEEeCCCCCceEEE
Confidence 999999999999999999999996 999999986
No 2
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=99.16 E-value=1.2e-11 Score=101.64 Aligned_cols=60 Identities=17% Similarity=0.135 Sum_probs=54.0
Q ss_pred hHHHHhhHHHHHHhhhcCCCCCCCCCcEEEEEEeeec-CCCCcceeeEEEee---ccCCceeEEe
Q 029551 124 DIMGILNKRAVEASESERPIPDIRTGDVVEIKLFLKI-GVGCPFTKVLLCQG---KMLGSTLQFE 184 (191)
Q Consensus 124 ~IM~ILnkeavee~~~~R~iPdiRpGdIVelklEVPE-nkRR~~t~~~ic~~---~glgstf~~~ 184 (191)
+||+.|++++++.+ ..+.+|+|+|||+|.+.+.+.| ||.|.+.|.|+||+ +|+++|||.-
T Consensus 6 ~li~~le~eqlk~l-~~~diP~Fr~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~Gl~sTFTVR 69 (166)
T 2zjr_M 6 KINRGELLRGIEQD-HTRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVR 69 (166)
T ss_dssp CCCHHHHHHHTTGG-GCCCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEE
T ss_pred HHHHHHHHHHHhhc-cccCCCCcCCCCEEEEEEEEecCCeeeecceEEEEEEEeCCCCCcEEEEE
Confidence 68899999998766 5789999999999999999998 78899999999996 9999999973
No 3
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=99.14 E-value=2.5e-11 Score=94.50 Aligned_cols=55 Identities=20% Similarity=0.298 Sum_probs=49.0
Q ss_pred hHHHHhhHHHHHHhhhcCCCCCCCCCcEEEEEEeeec-CCCCcceeeEEEee---ccCCceeEE
Q 029551 124 DIMGILNKRAVEASESERPIPDIRTGDVVEIKLFLKI-GVGCPFTKVLLCQG---KMLGSTLQF 183 (191)
Q Consensus 124 ~IM~ILnkeavee~~~~R~iPdiRpGdIVelklEVPE-nkRR~~t~~~ic~~---~glgstf~~ 183 (191)
+||+.|++++| .+.+|+|+|||+|.+.+.++| ||.|.+.|.|+||+ +|+++|||.
T Consensus 2 ~~i~~~e~~~~-----~~~iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~G~~~tftv 60 (114)
T 3r8s_P 2 NIIKQLEQEQM-----KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTV 60 (114)
T ss_dssp CHHHHHHGGGC-----CSCCCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCGGGCEEEE
T ss_pred hHHHHHHHHHh-----ccCCCccCCCCEEEEEEEEecCCceeeeeEEEEEEEEECCCCCeEEEE
Confidence 47777777766 579999999999999999998 78889999999997 899999996
No 4
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=99.09 E-value=8.8e-11 Score=94.89 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=48.9
Q ss_pred hhhHHHHhhHHHHHHhhhcCCCCCCCCCcEEEEEEeeec-CCCCcceeeEEEee---ccCCceeEE
Q 029551 122 LGDIMGILNKRAVEASESERPIPDIRTGDVVEIKLFLKI-GVGCPFTKVLLCQG---KMLGSTLQF 183 (191)
Q Consensus 122 ~g~IM~ILnkeavee~~~~R~iPdiRpGdIVelklEVPE-nkRR~~t~~~ic~~---~glgstf~~ 183 (191)
|.+||+.++++.+ ...+|+|+|||+|.|.+.++| |+.|.+.|.|+||+ +|+++|||.
T Consensus 3 ~~~li~~ie~~~~-----~~diP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~Gl~~tFtV 63 (146)
T 3v2d_T 3 RGALIKLVESRYV-----RTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTV 63 (146)
T ss_dssp HHHHHHHHHHTTC-----CCCCCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEECCGGGCEEEE
T ss_pred HHHHHHHHHHHHh-----hccCCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEECCCCCeEEEE
Confidence 4567777776665 479999999999999999998 67788999999996 899999997
No 5
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=98.92 E-value=9.6e-10 Score=83.54 Aligned_cols=42 Identities=19% Similarity=0.315 Sum_probs=39.8
Q ss_pred CCCCCCCcEEEEEEeeecCCCCcceeeEEEee---ccCCceeEEe
Q 029551 143 IPDIRTGDVVEIKLFLKIGVGCPFTKVLLCQG---KMLGSTLQFE 184 (191)
Q Consensus 143 iPdiRpGdIVelklEVPEnkRR~~t~~~ic~~---~glgstf~~~ 184 (191)
||+|+|||+|++.+.+++||.|.+.+.|+||+ +|+++|||.-
T Consensus 1 iP~f~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~~G~~~tftvR 45 (98)
T 2ftc_K 1 IPEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILR 45 (98)
T ss_pred CCccCCCCEEEEEEEECCCceEeeeEEEEEEEEECCCCCcEEEEE
Confidence 79999999999999999999999999999997 9999999963
No 6
>3d6x_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; FABZ, hot DOG fold, dehydratase, lipid biosynthesis, lipid synthesis, lyase; HET: MSE; 2.59A {Campylobacter jejuni subsp}
Probab=71.43 E-value=5.1 Score=28.97 Aligned_cols=29 Identities=14% Similarity=0.139 Sum_probs=20.2
Q ss_pred CCCCCCcEEEEEEeeecCCCCcceeeEEE
Q 029551 144 PDIRTGDVVEIKLFLKIGVGCPFTKVLLC 172 (191)
Q Consensus 144 PdiRpGdIVelklEVPEnkRR~~t~~~ic 172 (191)
=+++|||.+.+++++-+.+++..++.+-+
T Consensus 99 ~pV~pGd~l~~~~~v~~~~~~~~~~~~~~ 127 (146)
T 3d6x_A 99 NPVRPGDRLDYEMSVVKNRGNMWIFKGQA 127 (146)
T ss_dssp SCCCTTCEEEEEEEEEEEETTEEEEEEEE
T ss_pred cccCCCCEEEEEEEEEEeeCCEEEEEEEE
Confidence 34699999999999987655444444433
No 7
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=65.96 E-value=6.9 Score=28.54 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=22.0
Q ss_pred CCCCCCCCCcEEEEEEeeecCCCCcceeeEEEeecc
Q 029551 141 RPIPDIRTGDVVEIKLFLKIGVGCPFTKVLLCQGKM 176 (191)
Q Consensus 141 R~iPdiRpGdIVelklEVPEnkRR~~t~~~ic~~~g 176 (191)
.|-++.+|||+|++. |....=-||+++.|
T Consensus 3 ~~~~ep~pGDlI~~~-------r~~Y~H~gIYvGdg 31 (125)
T 2lkt_A 3 SPHQEPKPGDLIEIF-------RLGYEHWALYIGDG 31 (125)
T ss_dssp SSSCCCCTTCEEEEE-------CSSSCEEEEEEETT
T ss_pred CCCCCCCCCCEEEEe-------CCCccEEEEEeCCC
Confidence 567899999999763 55677788888743
No 8
>2gll_A FABZ, (3R)-hydroxymyristoyl-acyl carrier protein dehydratase; lyase; 2.20A {Helicobacter pylori} PDB: 2glm_A* 2glp_A* 2glv_A 3dp1_A* 3cf8_A* 3cf9_A* 3d04_A* 3doy_A* 3doz_A* 3dp0_A* 3b7j_A* 3dp2_A* 3dp3_A* 3ed0_A*
Probab=65.86 E-value=8.2 Score=29.61 Aligned_cols=32 Identities=16% Similarity=0.022 Sum_probs=21.5
Q ss_pred CCCCCCCCCcEEEEEEeeecCCCCcceeeEEE
Q 029551 141 RPIPDIRTGDVVEIKLFLKIGVGCPFTKVLLC 172 (191)
Q Consensus 141 R~iPdiRpGdIVelklEVPEnkRR~~t~~~ic 172 (191)
|=.=+++|||.+.+++++-..+++..++.+.+
T Consensus 120 kF~~pV~PGD~L~i~v~v~~~~~~~~~~~~~~ 151 (171)
T 2gll_A 120 KFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTA 151 (171)
T ss_dssp EECSCCCTTCEEEEEEEEEEESSSEEEEEEEE
T ss_pred EECCccCCCCEEEEEEEEEEEeCCEEEEEEEE
Confidence 33445789999999999987655444444433
No 9
>2f41_A Transcription factor FAPR; 'HOT-DOG' fold, gene regulation; 2.50A {Bacillus subtilis} SCOP: d.38.1.5
Probab=61.48 E-value=14 Score=25.97 Aligned_cols=42 Identities=17% Similarity=0.137 Sum_probs=25.3
Q ss_pred ccchhhHHHHhhHHHHHHhh---------hcCCCCCCCCCcEEEEEEeeec
Q 029551 119 RVKLGDIMGILNKRAVEASE---------SERPIPDIRTGDVVEIKLFLKI 160 (191)
Q Consensus 119 rkk~g~IM~ILnkeavee~~---------~~R~iPdiRpGdIVelklEVPE 160 (191)
...-+++|.+++-=+.-... +.|=+=+++|||.|.++.+|-+
T Consensus 37 i~hGg~~~alad~~~~~~~~~~~~~~~~~~i~F~~Pv~~Gd~l~~~a~v~~ 87 (121)
T 2f41_A 37 IARGHHLFAQANSLAVAVIDDELALTASADIRFTRQVKQGERVVAKAKVTA 87 (121)
T ss_dssp BBCHHHHHHHHHHHHHHTC---CCCEEEEEEEECSCCBTTCEEEEEEEEEE
T ss_pred EEchhHHHHHHHHHHHHhcCCceEEEEEeeEEEeCCcCCCCEEEEEEEEEE
Confidence 34455666666543322211 2233446789999999999984
No 10
>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=57.89 E-value=2.1 Score=36.85 Aligned_cols=10 Identities=40% Similarity=0.780 Sum_probs=5.2
Q ss_pred ccchhhHHHH
Q 029551 119 RVKLGDIMGI 128 (191)
Q Consensus 119 rkk~g~IM~I 128 (191)
--+.||++.+
T Consensus 142 eFr~GDtV~V 151 (233)
T 3bbo_R 142 GIRTGDIVQI 151 (233)
T ss_dssp SSCCCSCCCC
T ss_pred ccCCCCEEEE
Confidence 3446666543
No 11
>1u1z_A (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase; fatty acid biosynthesis, hot DOG fold, lyase; 2.50A {Pseudomonas aeruginosa} SCOP: d.38.1.6
Probab=54.31 E-value=15 Score=27.77 Aligned_cols=25 Identities=12% Similarity=0.005 Sum_probs=18.4
Q ss_pred cCCCCCCCCCcEEEEEEeeecCCCC
Q 029551 140 ERPIPDIRTGDVVEIKLFLKIGVGC 164 (191)
Q Consensus 140 ~R~iPdiRpGdIVelklEVPEnkRR 164 (191)
.|=.=+++|||.+.+++++-+.++.
T Consensus 115 vrF~~pV~pGD~L~~~v~v~~~~~g 139 (168)
T 1u1z_A 115 LRFRQPVLPGDQLQLHAKFISVKRS 139 (168)
T ss_dssp EEECSCCCTTCEEEEEEEEEEEETT
T ss_pred EEECCcCCCCCEEEEEEEEEEEeCC
Confidence 3334456799999999999876544
No 12
>3esi_A Uncharacterized protein; protein from erwinia carotovora subsp. atroseptica (pectobacterium atrosepticum), structural genomics; 2.50A {Pectobacterium atrosepticum}
Probab=51.84 E-value=10 Score=29.02 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=21.3
Q ss_pred hhcCCCCCCCCCcEEEEEEeeecCCCC
Q 029551 138 ESERPIPDIRTGDVVEIKLFLKIGVGC 164 (191)
Q Consensus 138 ~~~R~iPdiRpGdIVelklEVPEnkRR 164 (191)
++.|=.=.++|||.+++.+++-..+++
T Consensus 70 ~~vkF~~~V~PGD~l~l~v~~~~~~~~ 96 (129)
T 3esi_A 70 ENIKFQQPILPGKTLRLVLIWHAGKQS 96 (129)
T ss_dssp EEEEECSCCCTTCEEEEEEEEETTTTE
T ss_pred ceeEECcccCCCCEEEEEEEEEecCCc
Confidence 344555678999999999999887765
No 13
>4i83_A 3-hydroxyacyl-[acyl-carrier-protein] dehydratase; FABZ, hot DOG fold, thioesterase, lyase; 2.60A {Neisseria meningitidis}
Probab=51.06 E-value=19 Score=26.81 Aligned_cols=21 Identities=14% Similarity=0.091 Sum_probs=16.3
Q ss_pred CCCCCcEEEEEEeeecCCCCc
Q 029551 145 DIRTGDVVEIKLFLKIGVGCP 165 (191)
Q Consensus 145 diRpGdIVelklEVPEnkRR~ 165 (191)
.++|||.+.+++++-..++..
T Consensus 106 pV~PGd~L~i~~~v~~~~~~~ 126 (152)
T 4i83_A 106 QVIPGDQLVFEVELLTSRRGI 126 (152)
T ss_dssp CCCTTCEEEEEEEEEEEETTE
T ss_pred ccCCCCEEEEEEEEEEeeCCE
Confidence 358999999999988765443
No 14
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=49.72 E-value=14 Score=26.75 Aligned_cols=27 Identities=7% Similarity=0.073 Sum_probs=21.2
Q ss_pred CCCCCCCCcEEEEE-EeeecCCCCccee
Q 029551 142 PIPDIRTGDVVEIK-LFLKIGVGCPFTK 168 (191)
Q Consensus 142 ~iPdiRpGdIVelk-lEVPEnkRR~~t~ 168 (191)
..++|.+||+|+|+ ..+=+-+.+.+..
T Consensus 57 ~~~~~~~G~~V~i~n~~v~~~~G~~~L~ 84 (109)
T 2kbn_A 57 ELPLLEQGESYLLRSVVVGEYNDRFQVQ 84 (109)
T ss_dssp CCCCCCTTCEEEEEEEEEEEETTEEEEE
T ss_pred cccccCCCCEEEEEEEEEEEECCEEEEE
Confidence 46799999999999 8887777665443
No 15
>4h4g_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Burkholderia thailandensis}
Probab=49.15 E-value=20 Score=27.46 Aligned_cols=27 Identities=7% Similarity=0.037 Sum_probs=19.2
Q ss_pred CCCCCCCcEEEEEEeeecCCCCcceee
Q 029551 143 IPDIRTGDVVEIKLFLKIGVGCPFTKV 169 (191)
Q Consensus 143 iPdiRpGdIVelklEVPEnkRR~~t~~ 169 (191)
.=.++|||.+.+++++-..++....+.
T Consensus 108 ~~~V~PGd~L~i~v~~~~~~~~~~~~~ 134 (160)
T 4h4g_A 108 KRVVEPGDQLILNVTFERYIRGIWKFK 134 (160)
T ss_dssp CSCCCTTCEEEEEEEEEEEETTEEEEE
T ss_pred CcccCCCCEEEEEEEEEEeeCCEEEEE
Confidence 334789999999999876666543333
No 16
>2k9k_A TONB2; metal transport; NMR {Listonella anguillarum}
Probab=48.70 E-value=11 Score=26.31 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=26.9
Q ss_pred HHhhHHHHHHhhhcCCCCCCCCCcEEEEE-Eeee
Q 029551 127 GILNKRAVEASESERPIPDIRTGDVVEIK-LFLK 159 (191)
Q Consensus 127 ~ILnkeavee~~~~R~iPdiRpGdIVelk-lEVP 159 (191)
..||++|++.+++-+..|...-|.-|..+ +.+|
T Consensus 66 ~~ld~aAl~av~~~~f~P~~~~G~~v~~~~~~~p 99 (106)
T 2k9k_A 66 RMFEREAMQALKKWKYQPQIVDGKAIEQPGQTVT 99 (106)
T ss_dssp SSSHHHHHHHHHHCCCCCCCCSSCCSCEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCCCcCCeEeEEEEEEEE
Confidence 46999999999999999988888766655 5555
No 17
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=47.14 E-value=24 Score=31.42 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=23.6
Q ss_pred HHhhHHHHHHhhhcCCCCCCCCCcEEEEEEeeecCCCCcce
Q 029551 127 GILNKRAVEASESERPIPDIRTGDVVEIKLFLKIGVGCPFT 167 (191)
Q Consensus 127 ~ILnkeavee~~~~R~iPdiRpGdIVelklEVPEnkRR~~t 167 (191)
-.|+.+.|+++. +++||+|+|+ ++||..|
T Consensus 39 ~~~~~~~~~~l~-------~~~gd~v~~~-----g~~~~~~ 67 (489)
T 3hu3_A 39 VSLSQPKMDELQ-------LFRGDTVLLK-----GKKRREA 67 (489)
T ss_dssp EEECHHHHHHHT-------CCTTCEEEEE-----CSTTCEE
T ss_pred EEECHHHHHHcC-------CCCCCEEEEe-----cCccCcE
Confidence 357899999886 9999999998 7776444
No 18
>1z6b_A Pffabz, fatty acid synthesis protein; malaria, beta-hydroxyacyl-ACP dehydra fatty acid biosynthesis, SAD phasing, lyase; 2.09A {Plasmodium falciparum} SCOP: d.38.1.6 PDB: 3az8_A* 3az9_A* 3aza_A* 3azb_A* 1zhg_A 2oki_A 2okh_A
Probab=46.55 E-value=26 Score=25.59 Aligned_cols=24 Identities=17% Similarity=0.054 Sum_probs=18.2
Q ss_pred CCCCCCCCCcEEEEEEeeecCCCC
Q 029551 141 RPIPDIRTGDVVEIKLFLKIGVGC 164 (191)
Q Consensus 141 R~iPdiRpGdIVelklEVPEnkRR 164 (191)
|=.=+++|||.+.+++++-+.+.+
T Consensus 102 rF~~pV~pGd~l~~~~~v~~~~~~ 125 (154)
T 1z6b_A 102 RWKKPVLPGDTLTMQANLISFKSS 125 (154)
T ss_dssp EECSCCCTTCEEEEEEEEEEEETT
T ss_pred EEccccCCCCEEEEEEEEEEeeCC
Confidence 334467899999999999876553
No 19
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=46.05 E-value=30 Score=27.73 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=22.5
Q ss_pred HhhHHHHHHhhhcCCCCCCCCCcEEEEEEeeecCCCCcce
Q 029551 128 ILNKRAVEASESERPIPDIRTGDVVEIKLFLKIGVGCPFT 167 (191)
Q Consensus 128 ILnkeavee~~~~R~iPdiRpGdIVelklEVPEnkRR~~t 167 (191)
.|+.+.|+++. +.+||+|+|+ ++||..|
T Consensus 40 rl~p~~m~~Lg-------l~~GD~V~I~-----Gkr~k~T 67 (187)
T 3tiw_A 40 SLSQPKMDELQ-------LFRGDTVLLK-----GKKRREA 67 (187)
T ss_dssp EECHHHHHHHT-------CCTTCEEEEE-----CSTTCEE
T ss_pred EECHHHHHHcC-------CCCCCEEEEE-----CCCCCeE
Confidence 38899999985 9999999998 6765444
No 20
>3bnv_A CJ0977; virulence factor, hot-DOG fold, flagel unknown function; HET: MSE; 2.60A {Campylobacter jejuni}
Probab=45.12 E-value=29 Score=25.89 Aligned_cols=50 Identities=14% Similarity=-0.007 Sum_probs=31.4
Q ss_pred CccchhhHHHHhhHHHHHHhhh---------cCCCCCCCCCcEEEEEEeeecCC-CCcce
Q 029551 118 PRVKLGDIMGILNKRAVEASES---------ERPIPDIRTGDVVEIKLFLKIGV-GCPFT 167 (191)
Q Consensus 118 krkk~g~IM~ILnkeavee~~~---------~R~iPdiRpGdIVelklEVPEnk-RR~~t 167 (191)
....-|++|.++|-=+.-...+ .+=+=+++|||.|.++.+|=..+ |+...
T Consensus 63 g~~HGg~~~alad~a~~~~~~~~~~vt~~~~i~F~~PV~~GD~L~a~a~v~~~~~~~~~~ 122 (152)
T 3bnv_A 63 GLIFDAFIFAAANYVAQASINKEFSVIIGSKCFFYAPLKLGDVLELEAHALFDETSKKRD 122 (152)
T ss_dssp CBBCHHHHHHHHHHHHHHHHCCSSEEEEEEEEEECSCCBTTCEEEEEEEECCCSSCSEEE
T ss_pred CcccHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEeCCCCCCCEEEEEEEEEEEcCCcEEE
Confidence 3444667777777644333221 12233678999999999998776 55433
No 21
>2f3x_A Transcription factor FAPR; 'HOT-DOG' fold / malonyl-COA complex, gene regulation; HET: MLC; 3.10A {Bacillus subtilis} SCOP: d.38.1.5
Probab=44.91 E-value=24 Score=26.71 Aligned_cols=46 Identities=15% Similarity=0.092 Sum_probs=28.0
Q ss_pred CCccchhhHHHHhhHHHHHHhh---------hcCCCCCCCCCcEEEEEEeeecCC
Q 029551 117 KPRVKLGDIMGILNKRAVEASE---------SERPIPDIRTGDVVEIKLFLKIGV 162 (191)
Q Consensus 117 kkrkk~g~IM~ILnkeavee~~---------~~R~iPdiRpGdIVelklEVPEnk 162 (191)
.....-+++|...+-=+.-... +.|=+=+++|||.|.++.+|-+.+
T Consensus 71 ~gi~hGg~~~a~ad~~~~~~~~~~~~~t~~~~i~F~rPV~~GD~L~a~a~v~~~~ 125 (157)
T 2f3x_A 71 NQIARGHHLFAQANSLAVAVIDDELALTASADIRFTRQVKQGERVVAKAKVTAVE 125 (157)
T ss_dssp TCBBCHHHHHHHHHHHHHHTSCSSCCEEEEEEEEECSCCBTTCEEEEEEEEEEEE
T ss_pred CCEEcHHHHHHHHHHHHHHHcCCceEEEEEEEEEEeCCCCCCCEEEEEEEEEEEE
Confidence 3344566677766654432221 122334678999999999999433
No 22
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=42.85 E-value=34 Score=28.03 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=22.2
Q ss_pred hhHHHHHHhhhcCCCCCCCCCcEEEEEEeeecCCCCcce
Q 029551 129 LNKRAVEASESERPIPDIRTGDVVEIKLFLKIGVGCPFT 167 (191)
Q Consensus 129 Lnkeavee~~~~R~iPdiRpGdIVelklEVPEnkRR~~t 167 (191)
|+.+.|+++ .|.+||+|+|+ ++||..|
T Consensus 44 l~p~~m~~L-------gl~~GD~V~I~-----Gkr~k~T 70 (211)
T 3qwz_A 44 LSQPKMDEL-------QLFRGDTVLLK-----GXKRREA 70 (211)
T ss_dssp ECHHHHHHH-------TCCBTCEEEEE-----CSTTCEE
T ss_pred ECHHHHHHc-------CCCCCCEEEEe-----CCCCCcE
Confidence 788999988 58999999998 6776444
No 23
>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Sinorhizobium meliloti}
Probab=41.88 E-value=25 Score=31.03 Aligned_cols=32 Identities=28% Similarity=0.375 Sum_probs=20.9
Q ss_pred hHHHHHHhhhc-CCCCCCCCCcEEEEEEeeecC
Q 029551 130 NKRAVEASESE-RPIPDIRTGDVVEIKLFLKIG 161 (191)
Q Consensus 130 nkeavee~~~~-R~iPdiRpGdIVelklEVPEn 161 (191)
+...+|.+... ...|-+++||+|+|+++-+..
T Consensus 310 E~~~~~~~~~g~~~~~fL~~GD~V~i~~~~~~g 342 (359)
T 3lzk_A 310 ELRMIETIEGGAPKTQFLKFGDVVRIEMKDRTG 342 (359)
T ss_dssp HHHHHHHHHHSSCCSCCBCTTCEEEEEEBCTTS
T ss_pred hhhhhhhhccCCCCCCcCCCCCEEEEEEEcCCC
Confidence 33455555443 233689999999999885443
No 24
>3k67_A Putative dehydratase AF1124; hypothetical protein AF1124, structural genomics, PSI, protein structure initiative; 1.25A {Archaeoglobus fulgidus} PDB: 2b3m_A
Probab=38.55 E-value=37 Score=25.93 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=22.6
Q ss_pred CCCCCCCCCcEEEEEEeeecCCCCcceeeEEEee
Q 029551 141 RPIPDIRTGDVVEIKLFLKIGVGCPFTKVLLCQG 174 (191)
Q Consensus 141 R~iPdiRpGdIVelklEVPEnkRR~~t~~~ic~~ 174 (191)
|=.=++++||.|.++++|-+-+.+..++..-|..
T Consensus 111 rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~~~~ 144 (159)
T 3k67_A 111 RYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKCYT 144 (159)
T ss_dssp EECSCCCTTCEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEcCCcCCCCEEEEEEEEEEEECCEEEEEEEEEE
Confidence 3445689999999999987544444444444544
No 25
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A
Probab=37.31 E-value=21 Score=25.76 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=15.5
Q ss_pred HHHHHhhhcCCCCCCCCCc
Q 029551 132 RAVEASESERPIPDIRTGD 150 (191)
Q Consensus 132 eavee~~~~R~iPdiRpGd 150 (191)
+++.++.+.-.||.||+|-
T Consensus 30 ~~~~~~~k~~~ipGFRkGK 48 (109)
T 2nsc_A 30 KAVRYLNQRVEIPGFRKGR 48 (109)
T ss_dssp HHHHHHHTTCCCTTSCTTC
T ss_pred HHHHHHhccCCCCCcCCCC
Confidence 4667777788899999994
No 26
>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition DOM hydrolase; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A
Probab=35.04 E-value=25 Score=27.88 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=20.1
Q ss_pred HhhHHHHHHhhhcCCCCCCCCCcEEEEEEeeecCCCC
Q 029551 128 ILNKRAVEASESERPIPDIRTGDVVEIKLFLKIGVGC 164 (191)
Q Consensus 128 ILnkeavee~~~~R~iPdiRpGdIVelklEVPEnkRR 164 (191)
.|+.++|+++. +++||+|+|+ .+|+
T Consensus 25 rl~p~~m~~Lg-------l~~GD~V~I~-----G~r~ 49 (185)
T 1cz4_A 25 RLDESSRRLLD-------AEIGDVVEIE-----KVRK 49 (185)
T ss_dssp EECHHHHHTTC-------CCTTCEEEEE-----SSSE
T ss_pred EECHHHHHHcC-------CCCCCEEEEE-----cCCe
Confidence 37888888875 9999999996 5665
No 27
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F
Probab=34.26 E-value=13 Score=27.07 Aligned_cols=27 Identities=26% Similarity=0.591 Sum_probs=17.4
Q ss_pred CCCCCCCCCcEEEEEEeeecCCCCcceeeEE
Q 029551 141 RPIPDIRTGDVVEIKLFLKIGVGCPFTKVLL 171 (191)
Q Consensus 141 R~iPdiRpGdIVelklEVPEnkRR~~t~~~i 171 (191)
-+.-+++|||||.|+ .+.+=+-+++.|
T Consensus 25 i~~~~l~~GDiv~v~----~G~~iPaDg~v~ 51 (113)
T 2hc8_A 25 VPVEEVAVGDIVIVR----PGEKIPVDGVVV 51 (113)
T ss_dssp EEGGGCCTTCEEEEC----TTCBCCSEEEEE
T ss_pred EEHHHCCCCCEEEEC----CCCEEeeeEEEE
Confidence 345689999999986 344444444443
No 28
>1ixl_A Hypothetical protein PH1136; alpha+beta, hot-DOG-fold, structural genomics, unknown funct; 1.94A {Pyrococcus horikoshii} SCOP: d.38.1.5
Probab=33.01 E-value=53 Score=22.72 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=18.9
Q ss_pred CCCCCCcEEEEEEeeecCCCCcce
Q 029551 144 PDIRTGDVVEIKLFLKIGVGCPFT 167 (191)
Q Consensus 144 PdiRpGdIVelklEVPEnkRR~~t 167 (191)
=++++||.|.++.+|-...|+...
T Consensus 79 ~pv~~Gd~l~~~~~v~~~~~~~~~ 102 (131)
T 1ixl_A 79 KPVKVGDKLVAKAKIIEDLGKKKI 102 (131)
T ss_dssp SCCBTTCEEEEEEEEEEEETTEEE
T ss_pred CCCCCCCEEEEEEEEEEecCcEEE
Confidence 356889999999999887776433
No 29
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=31.57 E-value=23 Score=25.66 Aligned_cols=11 Identities=27% Similarity=0.727 Sum_probs=9.5
Q ss_pred CCCCCcEEEEE
Q 029551 145 DIRTGDVVEIK 155 (191)
Q Consensus 145 diRpGdIVelk 155 (191)
+++|||||+|.
T Consensus 56 g~k~GdVvkI~ 66 (84)
T 4ayb_H 56 NAKPGDIIRII 66 (84)
T ss_dssp TCCTTCEEEEE
T ss_pred CCCCCCEEEEE
Confidence 68999999875
No 30
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*
Probab=30.71 E-value=31 Score=25.38 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=16.8
Q ss_pred HHhhHHHHHHhhhcCCCCCCCCCc
Q 029551 127 GILNKRAVEASESERPIPDIRTGD 150 (191)
Q Consensus 127 ~ILnkeavee~~~~R~iPdiRpGd 150 (191)
..+| +++.++.+.=.||.||+|-
T Consensus 29 ~~~~-~~~~~~~k~v~ipGFRkGK 51 (121)
T 1p9y_A 29 TAVK-SELVNVAKKVRIDGLRKGK 51 (121)
T ss_dssp HHHH-HHHHHHHTTCCCTTSCTTC
T ss_pred HHHH-HHHHHHHhhCccCCcCCCC
Confidence 3444 4566777777899999994
No 31
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7
Probab=30.50 E-value=25 Score=25.44 Aligned_cols=19 Identities=16% Similarity=0.365 Sum_probs=15.1
Q ss_pred HHHHHhhhcCCCCCCCCCc
Q 029551 132 RAVEASESERPIPDIRTGD 150 (191)
Q Consensus 132 eavee~~~~R~iPdiRpGd 150 (191)
+++.++.+.=.||.||+|-
T Consensus 29 ~~~~~~~k~~~ipGFRkGK 47 (112)
T 2d3o_1 29 QVWAGLARDVRVPGFRPGK 47 (112)
T ss_dssp HHHHHHHTTSCBTTBCTTC
T ss_pred HHHHHHHhhCCCCCcCCCC
Confidence 4566777777899999994
No 32
>1iq6_A (R)-hydratase, (R)-specific enoyl-COA hydratase; polyhydroxyalkanoate, aeromonas caviae, the hydratase 2 motif, lyase; 1.50A {Aeromonas punctata} SCOP: d.38.1.4
Probab=27.99 E-value=74 Score=21.70 Aligned_cols=20 Identities=15% Similarity=0.011 Sum_probs=15.6
Q ss_pred CCCCCCCcEEEEEEeeecCC
Q 029551 143 IPDIRTGDVVEIKLFLKIGV 162 (191)
Q Consensus 143 iPdiRpGdIVelklEVPEnk 162 (191)
.=+++|||.|.++.+|-+.+
T Consensus 85 ~~Pv~~Gd~l~~~~~v~~~~ 104 (134)
T 1iq6_A 85 KLPVFVGDEVTAEVEVTALR 104 (134)
T ss_dssp CSCCBTTCEEEEEEEEEEEC
T ss_pred cCCCCCCCEEEEEEEEEEEE
Confidence 34568999999999987543
No 33
>1q1s_A Large T antigen; importin alpha/karyopherin alpha, nuclear localisation sequence (NLS) recognition, phosphorylation; 2.30A {Synthetic} PDB: 1q1t_A
Probab=27.67 E-value=19 Score=21.76 Aligned_cols=12 Identities=25% Similarity=0.501 Sum_probs=9.3
Q ss_pred hhhcCCCCCCcc
Q 029551 109 EEEVKAPRKPRV 120 (191)
Q Consensus 109 eeE~~~prkkrk 120 (191)
....+||+|||+
T Consensus 11 s~~sTPPKkKrk 22 (26)
T 1q1s_A 11 AQHAAPPKKKRK 22 (26)
T ss_pred ccccCCCccccc
Confidence 355689999987
No 34
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens}
Probab=27.07 E-value=18 Score=26.73 Aligned_cols=14 Identities=14% Similarity=0.534 Sum_probs=11.4
Q ss_pred CCCCCCCCcEEEEE
Q 029551 142 PIPDIRTGDVVEIK 155 (191)
Q Consensus 142 ~iPdiRpGdIVelk 155 (191)
++-+++|||||.|+
T Consensus 38 ~~~~l~~GDiv~v~ 51 (124)
T 2kij_A 38 DVELVQRGDIIKVV 51 (124)
T ss_dssp ETTTCCTTCEEECC
T ss_pred eHHHCCCCCEEEEC
Confidence 45589999999875
No 35
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=26.58 E-value=28 Score=24.68 Aligned_cols=10 Identities=40% Similarity=0.889 Sum_probs=9.5
Q ss_pred CCCCcEEEEE
Q 029551 146 IRTGDVVEIK 155 (191)
Q Consensus 146 iRpGdIVelk 155 (191)
|++||||.|+
T Consensus 84 l~~GdvI~V~ 93 (106)
T 3d0f_A 84 IRPGALIRVK 93 (106)
T ss_dssp CCTTEEEEEE
T ss_pred CCCCCEEEEE
Confidence 8999999998
No 36
>3kd4_A Putative protease; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503}
Probab=26.58 E-value=38 Score=30.25 Aligned_cols=19 Identities=5% Similarity=0.072 Sum_probs=16.8
Q ss_pred CCCCCCCCCcEEEEEEeee
Q 029551 141 RPIPDIRTGDVVEIKLFLK 159 (191)
Q Consensus 141 R~iPdiRpGdIVelklEVP 159 (191)
=.+|++|+||||+++.++=
T Consensus 101 ~~~p~v~~G~iIey~Y~i~ 119 (506)
T 3kd4_A 101 VVHTGLELGATIYLDYSII 119 (506)
T ss_dssp EECCSCCTTCEEEEEEEEE
T ss_pred EEcCCCCCCcEEEEEEEEE
Confidence 3789999999999998874
No 37
>2b3n_A Hypothetical protein AF1124; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.25A {Archaeoglobus fulgidus} PDB: 2b3m_A 3k67_A
Probab=25.54 E-value=84 Score=23.57 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=21.7
Q ss_pred CCCCCCCCCcEEEEEEeeecCCCCcceeeEEE
Q 029551 141 RPIPDIRTGDVVEIKLFLKIGVGCPFTKVLLC 172 (191)
Q Consensus 141 R~iPdiRpGdIVelklEVPEnkRR~~t~~~ic 172 (191)
|=.=+++|||.|.++++|-+.+++.-++.+.|
T Consensus 111 rF~~PV~~GD~L~~~~~v~~~~~~~v~~~~~~ 142 (159)
T 2b3n_A 111 RYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKC 142 (159)
T ss_dssp EECSCCCTTCEEEEEEEEEEEETTEEEEEEEE
T ss_pred EECCCcCCCCEEEEEEEEEEEcCCEEEEEEEE
Confidence 34456789999999999976644443444444
No 38
>1so2_A CGMP-inhibited 3',5'-cyclic phosphodiesterase B; PDE3B phosphodiesterase, hydrolase; HET: HG9 666; 2.40A {Homo sapiens} SCOP: a.211.1.2 PDB: 1soj_A*
Probab=24.99 E-value=25 Score=31.61 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=8.7
Q ss_pred hhhhcCCCCCC-c-cchhhHHHHhhH
Q 029551 108 EEEEVKAPRKP-R-VKLGDIMGILNK 131 (191)
Q Consensus 108 eeeE~~~prkk-r-kk~g~IM~ILnk 131 (191)
++..++|+|+| | +.+-+|||-|..
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (420)
T 1so2_A 389 NNLNPKPPRRKSRRRIFCQLMHHLTE 414 (420)
T ss_dssp -----------CCSSEECHHHHHHHH
T ss_pred cccCcccccccccchhHhHHHHHHHH
Confidence 34444544432 2 337788888764
No 39
>3cnr_A Type IV fimbriae assembly protein; PILZ, xanthomonas citri, type IV pilus assembly, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} PDB: 3dsg_A
Probab=24.53 E-value=52 Score=24.57 Aligned_cols=29 Identities=21% Similarity=0.146 Sum_probs=20.4
Q ss_pred CCCCCcEEEEEEeeecCCCC-cceeeEEEe
Q 029551 145 DIRTGDVVEIKLFLKIGVGC-PFTKVLLCQ 173 (191)
Q Consensus 145 diRpGdIVelklEVPEnkRR-~~t~~~ic~ 173 (191)
++++||.|.|.+.+|+...+ ...++++-+
T Consensus 41 ~~~~G~~V~l~l~Lp~~~~~i~~~GkVvWi 70 (117)
T 3cnr_A 41 RYMLGDEVFLLLTLPDSSERLPVAGKVIWT 70 (117)
T ss_dssp CCCTTCEEEEEEECTTCSCEEEEEEEEEEE
T ss_pred ccCCCCEEEEEEEcCCCCceEEEEEEEEEe
Confidence 57899999999999987533 333444444
No 40
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=24.30 E-value=76 Score=25.34 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=19.9
Q ss_pred CCCCcEEEEEEeeecCCC--Cc---ceeeEEEeeccCCce
Q 029551 146 IRTGDVVEIKLFLKIGVG--CP---FTKVLLCQGKMLGST 180 (191)
Q Consensus 146 iRpGdIVelklEVPEnkR--R~---~t~~~ic~~~glgst 180 (191)
+++||.|.|. -|-+.- .. .....|+||.|.|-|
T Consensus 136 l~~Gd~v~v~--gP~G~~~~~~~~~~~~~~vlIagGtGIa 173 (311)
T 3lo8_A 136 SKPGDKIQLT--GPSGKIMLLPEEDPNATHIMIATGTGVA 173 (311)
T ss_dssp CCTTCEEEEE--EEECCTTCCCCSCTTCEEEEEEEGGGGH
T ss_pred CCCcCEEEEE--eccCCcccCCCcCCCCCEEEEECCEEHH
Confidence 4789988765 565432 22 345567777776643
No 41
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=24.13 E-value=79 Score=22.11 Aligned_cols=20 Identities=25% Similarity=0.627 Sum_probs=14.9
Q ss_pred CCCCCcEEEEEEeeecCCCC
Q 029551 145 DIRTGDVVEIKLFLKIGVGC 164 (191)
Q Consensus 145 diRpGdIVelklEVPEnkRR 164 (191)
.|++||+|+|+=.|-+..++
T Consensus 63 ~i~~Gdvv~i~g~v~~~~~~ 82 (97)
T 3e0e_A 63 EVKKGDIAEVSGYVKQGYSG 82 (97)
T ss_dssp CCCTTCEEEEEEEEEEC--C
T ss_pred ccCCCCEEEEEEEEEEcCCe
Confidence 79999999998777665553
No 42
>3ir3_A HTD2, 3-hydroxyacyl-thioester dehydratase 2; structural GENO structural genomics consortium, SGC, lyase; 1.99A {Homo sapiens}
Probab=23.74 E-value=90 Score=22.72 Aligned_cols=24 Identities=17% Similarity=-0.054 Sum_probs=18.5
Q ss_pred CCCCCCCCCcEEEEEEeeecCCCC
Q 029551 141 RPIPDIRTGDVVEIKLFLKIGVGC 164 (191)
Q Consensus 141 R~iPdiRpGdIVelklEVPEnkRR 164 (191)
|=.=+++|||.|.++.+|-+.++.
T Consensus 93 rf~~PV~~Gd~l~~~~~v~~~~~~ 116 (148)
T 3ir3_A 93 SFPAPLYIGEVVLASAEVKKLKRF 116 (148)
T ss_dssp ECCSCCBTTCEEEEEEEEEEEETT
T ss_pred EECCCcCCCCEEEEEEEEEEEcCC
Confidence 445567899999999999765543
No 43
>3d6l_A Putative hydrolase; hot DOG fold, thioesterase, acyl-COA; 2.59A {Campylobacter jejuni}
Probab=23.22 E-value=1.2e+02 Score=20.61 Aligned_cols=26 Identities=8% Similarity=-0.037 Sum_probs=18.9
Q ss_pred CCCCCCCcEEEEEEeeecCCCCccee
Q 029551 143 IPDIRTGDVVEIKLFLKIGVGCPFTK 168 (191)
Q Consensus 143 iPdiRpGdIVelklEVPEnkRR~~t~ 168 (191)
+=++++||.|.++..|-.-.|+..++
T Consensus 60 ~~pv~~gd~l~v~~~v~~~g~~s~~~ 85 (137)
T 3d6l_A 60 KEPVFIGDIISCYSKVVNVGNTSISV 85 (137)
T ss_dssp CSCCCTTCEEEEEEEEEEECSSEEEE
T ss_pred eCCccCCCEEEEEEEEEEeCCcEEEE
Confidence 33568899999999987766664443
No 44
>4dpz_X HRAS-like suppressor 2; alpha/beta fold, enzyme phospholipid acyltransferase, hydrol transferase; 1.25A {Homo sapiens} PDB: 4fa0_A 2kyt_A
Probab=22.75 E-value=91 Score=24.07 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=18.3
Q ss_pred CCCCCCCcEEEEEEeeecCCCCcceeeEEEee
Q 029551 143 IPDIRTGDVVEIKLFLKIGVGCPFTKVLLCQG 174 (191)
Q Consensus 143 iPdiRpGdIVelklEVPEnkRR~~t~~~ic~~ 174 (191)
..+++|||+|.+. |....=+||-++
T Consensus 5 ~~~~~pGDlv~~~-------~~~~~H~gIYvG 29 (137)
T 4dpz_X 5 RPRPRLGDLIEIS-------RFGYAHWAIYVG 29 (137)
T ss_dssp CCCCCTTCEEEEE-------CSSSEEEEEEEE
T ss_pred cccCCCCCEEEEe-------CCCCCEEEEEeC
Confidence 3578999999885 334567788776
No 45
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=22.74 E-value=99 Score=24.09 Aligned_cols=32 Identities=22% Similarity=0.168 Sum_probs=18.1
Q ss_pred CCCCcEEEEEEeeecCCCC--cceeeEEEeeccCCc
Q 029551 146 IRTGDVVEIKLFLKIGVGC--PFTKVLLCQGKMLGS 179 (191)
Q Consensus 146 iRpGdIVelklEVPEnkRR--~~t~~~ic~~~glgs 179 (191)
+++||.|.|+ -|-+.-. ......|+||.|.|-
T Consensus 135 l~~Gd~v~v~--gP~G~f~~~~~~~~~vliagGtGi 168 (290)
T 2r6h_A 135 LKPGDKVMMS--GPYGDFHIQDTDAEMLYIGGGAGM 168 (290)
T ss_dssp CCTTCEEEEE--EEECCCCCCSSSCEEEEEEEGGGH
T ss_pred CCCCCEEEEE--ecccCCcCCCCCCeEEEEECccCH
Confidence 5789988766 4644322 122345666655553
No 46
>1wlu_A PAAI protein, phenylacetic acid degradation protein PAAI; thioesterase, hot DOG fold, S genomics; 1.45A {Thermus thermophilus HB8} SCOP: d.38.1.5 PDB: 1j1y_A 1wlv_A* 1wm6_A 1wn3_A* 2dsl_A
Probab=22.49 E-value=1.4e+02 Score=20.62 Aligned_cols=26 Identities=15% Similarity=-0.050 Sum_probs=19.8
Q ss_pred CCCCCcEEEEEEeeecCCCCcceeeE
Q 029551 145 DIRTGDVVEIKLFLKIGVGCPFTKVL 170 (191)
Q Consensus 145 diRpGdIVelklEVPEnkRR~~t~~~ 170 (191)
++++||.|.++.+|-...|+..+..+
T Consensus 73 p~~~Gd~l~~~~~v~~~g~~~~~~~~ 98 (136)
T 1wlu_A 73 PLGAGARVEARAVEVNLSRRTATYRV 98 (136)
T ss_dssp CCCTTCEEEEEEEEEEECSSEEEEEE
T ss_pred CCCCCCEEEEEEEEEECCCcEEEEEE
Confidence 56789999999999887777544433
No 47
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=22.08 E-value=54 Score=23.51 Aligned_cols=20 Identities=25% Similarity=0.212 Sum_probs=15.1
Q ss_pred CCCCcEEEEE-EeeecCCCCc
Q 029551 146 IRTGDVVEIK-LFLKIGVGCP 165 (191)
Q Consensus 146 iRpGdIVelk-lEVPEnkRR~ 165 (191)
|++||+|+|+ -.+=+.+.+.
T Consensus 60 l~~Gdvv~i~ng~v~~~~g~~ 80 (106)
T 2k75_A 60 LQDSDVVRIDNARVAQFNGYL 80 (106)
T ss_dssp CCTTEEEEEEEEEEEEETTEE
T ss_pred cCCCCEEEEEeeEEeEECCEE
Confidence 9999999998 6665554443
No 48
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.54 E-value=43 Score=22.10 Aligned_cols=12 Identities=33% Similarity=0.542 Sum_probs=10.0
Q ss_pred CCCCCCcEEEEE
Q 029551 144 PDIRTGDVVEIK 155 (191)
Q Consensus 144 PdiRpGdIVelk 155 (191)
.+|.+||.|+|.
T Consensus 6 ~~f~~GD~V~V~ 17 (59)
T 2e6z_A 6 SGFQPGDNVEVC 17 (59)
T ss_dssp SSCCTTSEEEEC
T ss_pred ccCCCCCEEEEe
Confidence 468999999974
No 49
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=21.16 E-value=57 Score=20.73 Aligned_cols=13 Identities=31% Similarity=0.664 Sum_probs=11.0
Q ss_pred CCCCCcEEEEEEe
Q 029551 145 DIRTGDVVEIKLF 157 (191)
Q Consensus 145 diRpGdIVelklE 157 (191)
+|++||.|++.++
T Consensus 25 gi~~Gd~v~i~~~ 37 (53)
T 2l66_A 25 QIKEGDLVKVTFD 37 (53)
T ss_dssp CCCTTCEEEEEEC
T ss_pred CcCCCCEEEEEEE
Confidence 6899999988764
No 50
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=20.95 E-value=52 Score=26.92 Aligned_cols=17 Identities=18% Similarity=0.395 Sum_probs=14.1
Q ss_pred hcCCCCCC-CCCcEEEEE
Q 029551 139 SERPIPDI-RTGDVVEIK 155 (191)
Q Consensus 139 ~~R~iPdi-RpGdIVelk 155 (191)
....+|.+ +.||||.|+
T Consensus 93 ~~e~LP~V~~~GDIIlL~ 110 (187)
T 1qzg_A 93 QGNDLPVIKQVGQPLLLH 110 (187)
T ss_dssp SSSCSCCCCSTTCEEEEE
T ss_pred ChhhCCCCCCCCCEEEEE
Confidence 35679999 999999874
No 51
>2c2i_A RV0130; hotdog, hydratase, lyase, structural proteomics in europe, spine, structural genomics; 1.8A {Mycobacterium tuberculosis} SCOP: d.38.1.4
Probab=20.87 E-value=56 Score=23.24 Aligned_cols=23 Identities=17% Similarity=-0.083 Sum_probs=17.8
Q ss_pred cCCCCCCCCCcEEEEEEeeecCC
Q 029551 140 ERPIPDIRTGDVVEIKLFLKIGV 162 (191)
Q Consensus 140 ~R~iPdiRpGdIVelklEVPEnk 162 (191)
.|=.=+++|||.|.++.+|-+.+
T Consensus 94 ~rF~~PV~~Gd~l~~~~~v~~~~ 116 (151)
T 2c2i_A 94 VRFPAPVPVGSRVRATSSLVGVE 116 (151)
T ss_dssp EECCSCCBTTCEEEEEEEEEEEE
T ss_pred EEECCCcCCCCEEEEEEEEEEEE
Confidence 44555779999999999986544
No 52
>2prx_A Thioesterase superfamily protein; ZP_00837258.1, structural joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.50A {Shewanella loihica}
Probab=20.85 E-value=97 Score=22.18 Aligned_cols=29 Identities=10% Similarity=-0.136 Sum_probs=20.0
Q ss_pred CCCCCcEEEEEEeeecCCCCcceeeEEEe
Q 029551 145 DIRTGDVVEIKLFLKIGVGCPFTKVLLCQ 173 (191)
Q Consensus 145 diRpGdIVelklEVPEnkRR~~t~~~ic~ 173 (191)
++++||.|.++.+|-...||..+..+-+.
T Consensus 107 pv~~gd~l~~~a~v~~~g~~~~~~~~~i~ 135 (160)
T 2prx_A 107 PTPMGVELELVGEIKEVKPRKVVVEIALS 135 (160)
T ss_dssp CCBTTSCEEEEEEEEEC--CEEEEEEEEE
T ss_pred CcCCCCEEEEEEEEEEecCCEEEEEEEEE
Confidence 56889999999999887777655544433
No 53
>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A {Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A 2hzy_A* 1qco_A 1qqj_A
Probab=20.74 E-value=1.1e+02 Score=27.48 Aligned_cols=29 Identities=21% Similarity=0.035 Sum_probs=20.9
Q ss_pred CCCCCCcEEEEEEeeecCCCCcceeeEEEee
Q 029551 144 PDIRTGDVVEIKLFLKIGVGCPFTKVLLCQG 174 (191)
Q Consensus 144 PdiRpGdIVelklEVPEnkRR~~t~~~ic~~ 174 (191)
.-+++||+|++++.-+.+- ..++.|=|.+
T Consensus 384 ~fL~~GD~V~~~~~~~~~g--~~igfG~~~~ 412 (421)
T 1hyo_A 384 TFLLDGDEVIITGHCQGDG--YRVGFGQCAG 412 (421)
T ss_dssp SSCCTTCEEEEEEEEECSS--CEEEEEEEEE
T ss_pred ccCCCCCEEEEEEEECCCC--ceeeeeeeEE
Confidence 4589999999999976433 3455666765
No 54
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=20.55 E-value=14 Score=28.97 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=21.7
Q ss_pred HHHHhhHHHHHHhhhcCCCCCCCCCcEEEEEEee
Q 029551 125 IMGILNKRAVEASESERPIPDIRTGDVVEIKLFL 158 (191)
Q Consensus 125 IM~ILnkeavee~~~~R~iPdiRpGdIVelklEV 158 (191)
+.++|....+..-+....-.-|++||+|+.|+.=
T Consensus 91 ~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~ 124 (179)
T 3m7n_A 91 GIGILHVSNVDEGYVKEISEAVGYLDILKARVIG 124 (179)
T ss_dssp EEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE
T ss_pred eeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC
Confidence 4455555444433333444569999999999884
Done!