BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029554
(191 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ANX|A Chain A, Crystal Structure Of TriamineAGMATINE
AMINOPROPYLTRANSFERASE (SPEE) From Thermus Thermophilus,
Complexed With Mta
pdb|3ANX|B Chain B, Crystal Structure Of TriamineAGMATINE
AMINOPROPYLTRANSFERASE (SPEE) From Thermus Thermophilus,
Complexed With Mta
Length = 314
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 60/145 (41%), Gaps = 16/145 (11%)
Query: 26 LVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRL 85
++ SG + F S G +V I D+ ++ +RD + +++ V +L
Sbjct: 24 VIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIY----HETLVHPA---MLTHP 76
Query: 86 EDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHN---DN 142
E R L +GG A R + +EK +M+D +++++ K + H D+
Sbjct: 77 EPKR-----VLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDD 131
Query: 143 IETCFVVGD-EEFLPLKESSLDLAI 166
V+ D +L E D+ I
Sbjct: 132 PRAVLVIDDARAYLERTEERYDVVI 156
>pdb|1UIR|A Chain A, Crystal Structure Of Polyamine Aminopropyltransfease From
Thermus Thermophilus
pdb|1UIR|B Chain B, Crystal Structure Of Polyamine Aminopropyltransfease From
Thermus Thermophilus
Length = 314
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 60/145 (41%), Gaps = 16/145 (11%)
Query: 26 LVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRL 85
++ SG + F S G +V I D+ ++ +RD + +++ V +L
Sbjct: 24 VIASGKTPFQDYFLFESKGFGKVLILDKDVQSTERDEYIY----HETLVHPA---MLTHP 76
Query: 86 EDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHN---DN 142
E R L +GG A R + +EK +M+D +++++ K + H D+
Sbjct: 77 EPKR-----VLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDD 131
Query: 143 IETCFVVGD-EEFLPLKESSLDLAI 166
V+ D +L E D+ I
Sbjct: 132 PRAVLVIDDARAYLERTEERYDVVI 156
>pdb|1TI8|A Chain A, H7 Haemagglutinin
Length = 314
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIM 120
D F++ A+ +++R E +P + EA+R++LR GGI+K M
Sbjct: 65 DQFLEFSADLIIERREGSDVCYPGKFV---NEEALRQILRESGGIDKETM 111
>pdb|4FQV|A Chain A, Crystal Structure Of Broadly Neutralizing Antibody Cr9114
Bound To H7 Influenza Hemagglutinin
pdb|4FQV|C Chain C, Crystal Structure Of Broadly Neutralizing Antibody Cr9114
Bound To H7 Influenza Hemagglutinin
pdb|4FQV|E Chain E, Crystal Structure Of Broadly Neutralizing Antibody Cr9114
Bound To H7 Influenza Hemagglutinin
Length = 327
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIM 120
D F++ A+ +++R E +P + EA+R++LR GGI+K M
Sbjct: 71 DQFLEFSADLIIERREGSDVCYPGKFV---NEEALRQILRESGGIDKETM 117
>pdb|4DJ6|A Chain A, Structure Of The Hemagglutinin From A Highly Pathogenic
H7n7 Influenza Virus
pdb|4DJ6|C Chain C, Structure Of The Hemagglutinin From A Highly Pathogenic
H7n7 Influenza Virus
pdb|4DJ6|E Chain E, Structure Of The Hemagglutinin From A Highly Pathogenic
H7n7 Influenza Virus
pdb|4DJ7|A Chain A, Structure Of The Hemagglutinin Complexed With 3sln From A
Highly Pathogenic H7n7 Influenza Virus
pdb|4DJ7|C Chain C, Structure Of The Hemagglutinin Complexed With 3sln From A
Highly Pathogenic H7n7 Influenza Virus
pdb|4DJ7|E Chain E, Structure Of The Hemagglutinin Complexed With 3sln From A
Highly Pathogenic H7n7 Influenza Virus
pdb|4DJ8|A Chain A, Structure Of The Hemagglutinin Complexed With 6sln From A
Highly Pathogenic H7n7 Influenza Virus
pdb|4DJ8|C Chain C, Structure Of The Hemagglutinin Complexed With 6sln From A
Highly Pathogenic H7n7 Influenza Virus
pdb|4DJ8|E Chain E, Structure Of The Hemagglutinin Complexed With 6sln From A
Highly Pathogenic H7n7 Influenza Virus
Length = 327
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIM 120
D F++ A+ +++R E +P + EA+R++LR GGI+K M
Sbjct: 71 DQFLEFSADLIIERREGSDVCYPGKFV---NEEALRQILRESGGIDKETM 117
>pdb|3OA8|B Chain B, Diheme Soxax
pdb|3OA8|D Chain D, Diheme Soxax
pdb|3OA8|F Chain F, Diheme Soxax
pdb|3OCD|B Chain B, Diheme Soxax - C236m Mutant
pdb|3OCD|D Chain D, Diheme Soxax - C236m Mutant
Length = 208
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 51 FDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLR 110
++ L++ + R +TR N S A A + + E+ R FP LG + +
Sbjct: 51 WESRLQQDETQRICSVTRNNPSPEQAAA---IMKAEEVRIKFPAGPVLGSWKDGAKVAQN 107
Query: 111 GRGG 114
GRGG
Sbjct: 108 GRGG 111
>pdb|2AE7|A Chain A, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|2AE7|B Chain B, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|2AE7|C Chain C, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|2AEC|A Chain A, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,6-Man- Beta-Or
pdb|2AEC|B Chain B, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,6-Man- Beta-Or
pdb|2AEC|C Chain C, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,6-Man- Beta-Or
pdb|2AES|A Chain A, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,3-Man- Beta-Or
pdb|2AES|B Chain B, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,3-Man- Beta-Or
pdb|2AES|C Chain C, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,3-Man- Beta-Or
pdb|2AGD|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase- I(M340h-B4gal-T1)
In Complex With Glcnac-Beta1,4-Man-Alpha1,3-Man- Beta-Or
pdb|2AGD|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase- I(M340h-B4gal-T1)
In Complex With Glcnac-Beta1,4-Man-Alpha1,3-Man- Beta-Or
pdb|2AGD|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase- I(M340h-B4gal-T1)
In Complex With Glcnac-Beta1,4-Man-Alpha1,3-Man- Beta-Or
pdb|2AH9|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Chitotriose
pdb|2AH9|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Chitotriose
pdb|2AH9|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Chitotriose
pdb|2FY7|A Chain A, Crystal Structure Of The Catalytic Domain Of The Human
Beta1,4-galactosyltransferase Mutant M339h In Apo Form
pdb|2FYA|A Chain A, Crystal Structure Of The Catalytic Domain Of The Human
Beta1, 4-Galactosyltransferase Mutant M339h Complex With
Manganese
pdb|2FYB|A Chain A, Crystal Structure Of The Catalytic Domain Of The Human
Beta1,4-Galactosyltransferase Mutant M339h In Complex
With Mn And Udp-Galactose In Open Conformation
pdb|3EE5|A Chain A, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,3-Gal-Beta-
Naphthalenemethanol
pdb|3EE5|B Chain B, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,3-Gal-Beta-
Naphthalenemethanol
pdb|3EE5|C Chain C, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,3-Gal-Beta-
Naphthalenemethanol
pdb|4EE3|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|4EE3|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|4EE3|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|4EE4|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Tetrasaccharide From Lacto-N- Neohexose
pdb|4EE4|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Tetrasaccharide From Lacto-N- Neohexose
pdb|4EE4|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Tetrasaccharide From Lacto-N- Neohexose
pdb|4EE5|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Trisaccharide From Lacto-N- Neotetraose
pdb|4EE5|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Trisaccharide From Lacto-N- Neotetraose
pdb|4EE5|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Trisaccharide From Lacto-N- Neotetraose
pdb|4EEA|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta1,4-Glc-Beta
pdb|4EEA|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta1,4-Glc-Beta
pdb|4EEA|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta1,4-Glc-Beta
pdb|4EEG|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta
pdb|4EEG|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta
pdb|4EEG|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta
pdb|4EEM|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Man-Alpha-Methyl
pdb|4EEM|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Man-Alpha-Methyl
pdb|4EEM|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Man-Alpha-Methyl
pdb|4EEO|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Glcnac-Alpha-Benzyl
pdb|4EEO|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Glcnac-Alpha-Benzyl
pdb|4EEO|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Glcnac-Alpha-Benzyl
Length = 287
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 122 DTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESS 161
DT ++ KL Q+A D TCFV D + +P+ + +
Sbjct: 108 DTIFNRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMNDHN 147
>pdb|3P0R|A Chain A, Crystal Structure Of Azoreductase From Bacillus Anthracis
Str. Sterne
Length = 211
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 11/94 (11%)
Query: 29 SGSFCTDNGFETTSNGSSRVSIFDRHLKR-KQRDRAAWLTRPNDSFVDAVAENLLDRLED 87
+G+F GF+ T + V++ D++L + + D+ + + + AV +D L
Sbjct: 61 NGTFKAGKGFDLTEEEAKAVAVADKYLNQFLEADKVVFGFPLWNLTIPAVLHTYIDYLNR 120
Query: 88 CRKTF------PTALCLGGSLEAVRRLLRGRGGI 115
KTF P L + LL RGG+
Sbjct: 121 AGKTFKYTPEGPVGLIGDKKI----ALLNARGGV 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,259,364
Number of Sequences: 62578
Number of extensions: 196636
Number of successful extensions: 392
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 390
Number of HSP's gapped (non-prelim): 9
length of query: 191
length of database: 14,973,337
effective HSP length: 93
effective length of query: 98
effective length of database: 9,153,583
effective search space: 897051134
effective search space used: 897051134
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)