Query 029554
Match_columns 191
No_of_seqs 184 out of 1762
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 14:46:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029554.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029554hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2226 UbiE Methylase involve 99.9 8.5E-25 1.8E-29 169.0 13.6 136 52-191 9-149 (238)
2 KOG2940 Predicted methyltransf 99.9 2.4E-24 5.2E-29 162.6 6.3 160 17-191 7-167 (325)
3 PF01209 Ubie_methyltran: ubiE 99.9 1.4E-23 3E-28 163.2 9.6 135 53-191 6-146 (233)
4 PRK10258 biotin biosynthesis p 99.9 7.8E-23 1.7E-27 161.0 13.5 131 50-191 3-133 (251)
5 PLN02233 ubiquinone biosynthes 99.9 4.3E-21 9.3E-26 152.0 15.3 138 53-191 32-175 (261)
6 PRK05785 hypothetical protein; 99.9 1.2E-20 2.6E-25 146.4 12.9 127 53-190 8-139 (226)
7 TIGR02752 MenG_heptapren 2-hep 99.8 2E-19 4.4E-24 139.8 14.3 135 53-191 4-144 (231)
8 PRK14103 trans-aconitate 2-met 99.8 8.6E-20 1.9E-24 144.1 9.2 104 76-191 16-119 (255)
9 PF08241 Methyltransf_11: Meth 99.8 1.1E-19 2.4E-24 121.5 8.3 90 96-191 1-90 (95)
10 PLN02244 tocopherol O-methyltr 99.8 3.1E-18 6.7E-23 140.4 16.7 100 90-191 117-216 (340)
11 TIGR02072 BioC biotin biosynth 99.8 6.9E-19 1.5E-23 136.8 12.0 126 60-191 2-128 (240)
12 PRK01683 trans-aconitate 2-met 99.8 4.7E-19 1E-23 140.0 10.0 110 72-191 14-123 (258)
13 KOG1540 Ubiquinone biosynthesi 99.8 4.3E-18 9.3E-23 130.6 14.6 137 53-191 59-207 (296)
14 PLN02396 hexaprenyldihydroxybe 99.8 4.3E-18 9.3E-23 138.0 14.4 98 91-191 131-228 (322)
15 COG4106 Tam Trans-aconitate me 99.8 1.8E-19 3.9E-24 135.1 4.9 105 77-191 18-122 (257)
16 PRK11036 putative S-adenosyl-L 99.8 6E-18 1.3E-22 133.6 13.5 100 89-191 42-142 (255)
17 PF13847 Methyltransf_31: Meth 99.8 4.6E-18 1E-22 124.2 9.7 98 91-191 3-103 (152)
18 COG2227 UbiG 2-polyprenyl-3-me 99.7 2.1E-18 4.6E-23 131.9 6.7 97 90-191 58-154 (243)
19 PRK15451 tRNA cmo(5)U34 methyl 99.7 4.6E-17 1E-21 128.0 13.2 99 90-191 55-157 (247)
20 PF08242 Methyltransf_12: Meth 99.7 9.5E-19 2.1E-23 118.7 3.1 94 96-191 1-96 (99)
21 PRK11207 tellurite resistance 99.7 3.4E-17 7.4E-22 124.6 11.5 96 91-191 30-127 (197)
22 PLN02490 MPBQ/MSBQ methyltrans 99.7 2.1E-17 4.5E-22 134.6 10.6 97 90-191 112-208 (340)
23 PF13649 Methyltransf_25: Meth 99.7 1.2E-17 2.7E-22 113.7 6.2 94 95-191 1-100 (101)
24 PTZ00098 phosphoethanolamine N 99.7 9.3E-17 2E-21 127.3 11.5 107 78-191 41-149 (263)
25 PF12847 Methyltransf_18: Meth 99.7 2.7E-17 5.8E-22 113.7 7.4 99 91-191 1-104 (112)
26 KOG4300 Predicted methyltransf 99.7 1.4E-16 3.1E-21 118.8 11.4 100 89-191 74-175 (252)
27 TIGR00477 tehB tellurite resis 99.7 2.3E-16 4.9E-21 119.9 11.0 104 80-191 21-126 (195)
28 PLN02336 phosphoethanolamine N 99.7 2.8E-16 6.1E-21 134.2 12.6 107 79-191 256-362 (475)
29 PRK00216 ubiE ubiquinone/menaq 99.7 1E-15 2.2E-20 119.0 14.6 137 52-191 9-151 (239)
30 PRK15068 tRNA mo(5)U34 methylt 99.7 3.8E-16 8.3E-21 127.1 12.6 99 90-191 121-219 (322)
31 TIGR03587 Pse_Me-ase pseudamin 99.7 4.4E-16 9.6E-21 119.0 11.8 91 91-189 43-135 (204)
32 PRK06202 hypothetical protein; 99.7 7E-16 1.5E-20 120.2 13.1 96 90-190 59-160 (232)
33 PRK11873 arsM arsenite S-adeno 99.7 4E-16 8.6E-21 124.3 11.6 100 90-191 76-176 (272)
34 PRK08317 hypothetical protein; 99.7 7.6E-16 1.7E-20 119.6 12.8 107 80-191 10-117 (241)
35 TIGR00740 methyltransferase, p 99.7 1E-15 2.3E-20 119.7 13.0 99 90-191 52-154 (239)
36 TIGR00452 methyltransferase, p 99.7 9.3E-16 2E-20 123.9 12.3 99 90-191 120-218 (314)
37 KOG1270 Methyltransferases [Co 99.7 7.2E-17 1.6E-21 124.5 5.6 94 93-191 91-188 (282)
38 PF13489 Methyltransf_23: Meth 99.7 1.8E-16 3.8E-21 116.0 7.4 98 80-191 11-108 (161)
39 TIGR01934 MenG_MenH_UbiE ubiqu 99.7 2E-15 4.4E-20 116.2 13.6 128 58-191 3-136 (223)
40 PRK00107 gidB 16S rRNA methylt 99.6 5.3E-15 1.1E-19 111.5 13.2 94 91-191 45-138 (187)
41 smart00828 PKS_MT Methyltransf 99.6 1.5E-15 3.2E-20 117.6 10.3 96 94-191 2-97 (224)
42 PF05401 NodS: Nodulation prot 99.6 2.7E-15 5.7E-20 112.0 11.0 96 89-191 41-139 (201)
43 PRK12335 tellurite resistance 99.6 2.8E-15 6E-20 120.4 11.7 95 91-191 120-216 (287)
44 KOG1541 Predicted protein carb 99.6 1.9E-15 4.2E-20 113.8 8.4 122 61-191 17-153 (270)
45 PRK00121 trmB tRNA (guanine-N( 99.6 3.1E-15 6.7E-20 114.3 9.1 99 91-191 40-149 (202)
46 PRK11088 rrmA 23S rRNA methylt 99.6 1.3E-14 2.7E-19 115.7 13.0 123 50-191 49-174 (272)
47 PRK06922 hypothetical protein; 99.6 3.1E-15 6.6E-20 129.4 9.7 98 91-191 418-530 (677)
48 TIGR02081 metW methionine bios 99.6 7.2E-15 1.6E-19 111.5 9.5 90 91-190 13-104 (194)
49 smart00138 MeTrc Methyltransfe 99.6 8.9E-15 1.9E-19 116.0 9.9 101 91-191 99-235 (264)
50 TIGR00138 gidB 16S rRNA methyl 99.6 3.3E-14 7.1E-19 106.8 12.3 94 91-191 42-135 (181)
51 TIGR02469 CbiT precorrin-6Y C5 99.6 3.8E-14 8.3E-19 99.3 11.9 109 76-191 6-115 (124)
52 TIGR02021 BchM-ChlM magnesium 99.6 3.3E-14 7.1E-19 109.8 12.5 107 79-191 43-151 (219)
53 PF02353 CMAS: Mycolic acid cy 99.6 1.1E-14 2.5E-19 115.7 10.1 110 75-191 48-159 (273)
54 PF07021 MetW: Methionine bios 99.6 8.5E-15 1.8E-19 109.1 8.1 90 90-189 12-103 (193)
55 PLN02336 phosphoethanolamine N 99.6 1.2E-14 2.5E-19 124.3 10.1 104 80-191 28-135 (475)
56 PLN02585 magnesium protoporphy 99.6 1.1E-13 2.4E-18 112.1 13.5 106 77-187 129-240 (315)
57 PRK13944 protein-L-isoaspartat 99.5 6.7E-14 1.5E-18 107.1 11.4 107 76-191 59-166 (205)
58 KOG3010 Methyltransferase [Gen 99.5 6.6E-15 1.4E-19 112.4 5.7 95 93-191 35-129 (261)
59 TIGR00091 tRNA (guanine-N(7)-) 99.5 2.4E-14 5.2E-19 108.7 8.7 99 91-191 16-125 (194)
60 PF03848 TehB: Tellurite resis 99.5 4.3E-14 9.3E-19 106.3 9.7 95 91-191 30-126 (192)
61 COG2230 Cfa Cyclopropane fatty 99.5 9.3E-14 2E-18 109.7 11.4 106 79-191 62-169 (283)
62 PLN03075 nicotianamine synthas 99.5 2.4E-13 5.2E-18 108.4 12.6 100 91-191 123-226 (296)
63 PRK11705 cyclopropane fatty ac 99.5 1.4E-13 3E-18 114.5 11.8 94 89-191 165-260 (383)
64 TIGR03840 TMPT_Se_Te thiopurin 99.5 2.3E-13 5E-18 104.6 11.9 99 91-191 34-145 (213)
65 PRK08287 cobalt-precorrin-6Y C 99.5 4E-13 8.7E-18 101.3 12.9 112 71-191 13-124 (187)
66 PF05175 MTS: Methyltransferas 99.5 3.1E-13 6.6E-18 100.5 11.9 106 81-191 23-133 (170)
67 PRK13942 protein-L-isoaspartat 99.5 3.8E-13 8.3E-18 103.5 12.8 108 74-191 61-169 (212)
68 PRK07580 Mg-protoporphyrin IX 99.5 3.9E-13 8.4E-18 104.3 12.4 106 79-190 50-158 (230)
69 PRK14121 tRNA (guanine-N(7)-)- 99.5 2.4E-13 5.2E-18 112.1 11.4 100 90-191 121-228 (390)
70 TIGR00537 hemK_rel_arch HemK-r 99.5 4.1E-13 8.9E-18 100.6 11.5 94 91-191 19-133 (179)
71 PRK05134 bifunctional 3-demeth 99.5 9.5E-13 2.1E-17 102.4 13.9 97 90-191 47-144 (233)
72 TIGR01983 UbiG ubiquinone bios 99.5 2.7E-13 5.8E-18 104.8 9.9 97 91-191 45-142 (224)
73 PRK09489 rsmC 16S ribosomal RN 99.5 7E-13 1.5E-17 108.7 12.4 96 91-191 196-296 (342)
74 PRK15001 SAM-dependent 23S rib 99.5 3.9E-13 8.4E-18 111.1 10.9 99 92-191 229-333 (378)
75 TIGR00080 pimt protein-L-isoas 99.5 8.3E-13 1.8E-17 101.8 12.1 107 75-191 63-170 (215)
76 COG4976 Predicted methyltransf 99.5 1.4E-14 3.1E-19 109.8 1.5 127 54-191 85-218 (287)
77 PF08003 Methyltransf_9: Prote 99.5 6.3E-13 1.4E-17 105.4 10.7 108 79-191 105-212 (315)
78 TIGR02716 C20_methyl_CrtF C-20 99.4 1.7E-12 3.7E-17 105.1 12.4 98 90-191 148-247 (306)
79 PRK13255 thiopurine S-methyltr 99.4 2.5E-12 5.4E-17 99.3 11.3 99 91-191 37-148 (218)
80 COG2813 RsmC 16S RNA G1207 met 99.4 6.3E-13 1.4E-17 105.4 8.2 118 68-191 134-259 (300)
81 PRK00312 pcm protein-L-isoaspa 99.4 4.7E-12 1E-16 97.3 12.3 106 74-191 63-168 (212)
82 PRK00377 cbiT cobalt-precorrin 99.4 4.9E-12 1.1E-16 96.3 12.3 112 74-191 25-138 (198)
83 TIGR03438 probable methyltrans 99.4 6E-12 1.3E-16 101.7 12.3 100 91-191 63-170 (301)
84 PRK11188 rrmJ 23S rRNA methylt 99.4 2.6E-12 5.6E-17 98.6 9.6 89 90-191 50-158 (209)
85 TIGR00406 prmA ribosomal prote 99.4 8.3E-12 1.8E-16 100.3 12.1 96 89-191 157-252 (288)
86 PRK07402 precorrin-6B methylas 99.4 1.6E-11 3.4E-16 93.3 12.2 112 72-191 23-135 (196)
87 TIGR03534 RF_mod_PrmC protein- 99.4 1.4E-11 3.1E-16 96.6 12.1 98 91-191 87-210 (251)
88 cd02440 AdoMet_MTases S-adenos 99.3 1.2E-11 2.6E-16 82.6 9.5 95 94-191 1-97 (107)
89 PRK14967 putative methyltransf 99.3 2.1E-11 4.5E-16 94.5 12.1 97 90-191 35-152 (223)
90 PLN02232 ubiquinone biosynthes 99.3 3.1E-12 6.7E-17 94.2 7.1 73 119-191 1-74 (160)
91 PRK14966 unknown domain/N5-glu 99.3 3.5E-11 7.6E-16 100.1 13.6 76 91-169 251-327 (423)
92 PRK14968 putative methyltransf 99.3 2.1E-11 4.6E-16 91.5 11.1 99 90-191 22-141 (188)
93 TIGR01177 conserved hypothetic 99.3 2.2E-11 4.8E-16 99.6 11.9 113 73-191 166-287 (329)
94 TIGR00536 hemK_fam HemK family 99.3 3.6E-11 7.9E-16 96.4 12.9 97 93-191 116-237 (284)
95 PRK00517 prmA ribosomal protei 99.3 2.3E-11 5E-16 95.9 11.3 96 82-191 110-206 (250)
96 smart00650 rADc Ribosomal RNA 99.3 1.6E-11 3.5E-16 91.2 9.6 85 80-172 4-88 (169)
97 PRK04266 fibrillarin; Provisio 99.3 2.4E-11 5.1E-16 94.3 10.6 96 89-191 70-169 (226)
98 KOG1271 Methyltransferases [Ge 99.3 2.4E-11 5.2E-16 89.4 9.9 98 92-191 68-174 (227)
99 PF13659 Methyltransf_26: Meth 99.3 3.6E-12 7.9E-17 88.6 5.5 98 92-191 1-108 (117)
100 PRK13943 protein-L-isoaspartat 99.3 2.2E-11 4.9E-16 98.9 10.7 104 78-191 69-173 (322)
101 PTZ00146 fibrillarin; Provisio 99.3 5.1E-11 1.1E-15 94.9 10.6 120 66-191 106-230 (293)
102 TIGR03533 L3_gln_methyl protei 99.3 1.8E-10 3.9E-15 92.4 13.5 76 91-168 121-196 (284)
103 PRK11805 N5-glutamine S-adenos 99.2 1.1E-10 2.4E-15 94.6 11.7 97 93-191 135-256 (307)
104 PRK00811 spermidine synthase; 99.2 1E-10 2.2E-15 93.7 11.3 101 91-191 76-184 (283)
105 PRK13256 thiopurine S-methyltr 99.2 1.3E-10 2.9E-15 89.7 11.3 99 91-191 43-156 (226)
106 COG4123 Predicted O-methyltran 99.2 8E-11 1.7E-15 91.6 9.9 109 81-191 35-163 (248)
107 COG2518 Pcm Protein-L-isoaspar 99.2 1.7E-10 3.7E-15 87.4 11.2 95 74-175 57-152 (209)
108 PRK09328 N5-glutamine S-adenos 99.2 1.5E-10 3.3E-15 92.2 11.3 77 90-169 107-183 (275)
109 PHA03411 putative methyltransf 99.2 1.8E-10 3.8E-15 91.0 11.3 77 90-174 63-139 (279)
110 COG2242 CobL Precorrin-6B meth 99.2 4.6E-10 1E-14 83.4 12.8 110 73-191 18-128 (187)
111 COG2264 PrmA Ribosomal protein 99.2 1.3E-10 2.7E-15 92.8 9.8 95 90-191 161-256 (300)
112 PF01135 PCMT: Protein-L-isoas 99.2 7.6E-11 1.7E-15 90.3 8.2 98 73-174 56-154 (209)
113 PF03291 Pox_MCEL: mRNA cappin 99.2 4.7E-11 1E-15 97.4 7.1 100 91-191 62-179 (331)
114 PRK04457 spermidine synthase; 99.2 2.3E-10 5E-15 90.7 10.8 100 91-191 66-170 (262)
115 TIGR00563 rsmB ribosomal RNA s 99.2 2.5E-10 5.5E-15 96.5 11.3 102 89-191 236-361 (426)
116 PRK10901 16S rRNA methyltransf 99.2 3.8E-10 8.2E-15 95.4 11.8 100 89-191 242-365 (427)
117 PRK00274 ksgA 16S ribosomal RN 99.2 1.1E-10 2.3E-15 93.2 7.9 88 74-170 27-114 (272)
118 TIGR00438 rrmJ cell division p 99.2 3.9E-10 8.4E-15 85.1 10.2 89 90-191 31-139 (188)
119 PRK14901 16S rRNA methyltransf 99.1 4.5E-10 9.8E-15 95.1 11.4 101 89-191 250-377 (434)
120 PRK14896 ksgA 16S ribosomal RN 99.1 3.4E-10 7.4E-15 89.6 10.0 90 74-173 14-103 (258)
121 KOG1975 mRNA cap methyltransfe 99.1 1.8E-10 3.8E-15 91.7 8.1 102 89-191 115-230 (389)
122 PF06325 PrmA: Ribosomal prote 99.1 3.3E-10 7.1E-15 90.9 9.4 101 82-191 152-252 (295)
123 KOG2361 Predicted methyltransf 99.1 2.9E-10 6.3E-15 87.1 8.1 98 91-191 71-176 (264)
124 TIGR00417 speE spermidine synt 99.1 9.7E-10 2.1E-14 87.6 10.8 101 91-191 72-179 (270)
125 PRK03522 rumB 23S rRNA methylu 99.1 8.3E-10 1.8E-14 89.8 9.6 74 91-168 173-247 (315)
126 COG2890 HemK Methylase of poly 99.1 1.2E-09 2.6E-14 87.4 10.2 70 94-168 113-183 (280)
127 TIGR03704 PrmC_rel_meth putati 99.1 3.1E-09 6.7E-14 83.8 12.4 73 92-169 87-161 (251)
128 PRK01544 bifunctional N5-gluta 99.1 1.3E-09 2.7E-14 94.0 10.9 76 92-169 139-214 (506)
129 PRK13168 rumA 23S rRNA m(5)U19 99.1 9.9E-10 2.2E-14 93.3 10.1 76 90-169 296-375 (443)
130 PHA03412 putative methyltransf 99.0 2.3E-09 5.1E-14 82.9 10.6 93 91-191 49-156 (241)
131 PF05219 DREV: DREV methyltran 99.0 8.1E-10 1.8E-14 86.0 8.0 87 92-191 95-181 (265)
132 TIGR00755 ksgA dimethyladenosi 99.0 1.4E-09 3E-14 85.9 9.4 88 75-172 15-105 (253)
133 PTZ00338 dimethyladenosine tra 99.0 1.3E-09 2.8E-14 87.7 9.3 93 75-174 22-114 (294)
134 PRK14902 16S rRNA methyltransf 99.0 2.3E-09 5E-14 91.1 11.3 100 89-191 248-372 (444)
135 PRK14903 16S rRNA methyltransf 99.0 1.7E-09 3.8E-14 91.4 10.2 101 89-191 235-359 (431)
136 PF00891 Methyltransf_2: O-met 99.0 2.1E-09 4.5E-14 84.2 9.8 89 91-191 100-190 (241)
137 PF05891 Methyltransf_PK: AdoM 99.0 3.6E-10 7.7E-15 86.0 5.1 97 91-191 55-154 (218)
138 PRK01581 speE spermidine synth 99.0 2.6E-09 5.7E-14 87.5 10.3 101 91-191 150-261 (374)
139 PLN02366 spermidine synthase 99.0 6.6E-09 1.4E-13 84.1 12.3 101 91-191 91-199 (308)
140 PRK14904 16S rRNA methyltransf 99.0 2.7E-09 5.9E-14 90.7 10.3 100 89-191 248-370 (445)
141 PLN02781 Probable caffeoyl-CoA 99.0 5.5E-09 1.2E-13 81.6 11.2 107 80-191 58-171 (234)
142 TIGR00446 nop2p NOL1/NOP2/sun 99.0 2.4E-09 5.3E-14 85.0 9.3 101 89-191 69-192 (264)
143 PF02390 Methyltransf_4: Putat 99.0 1.3E-09 2.7E-14 82.8 7.0 98 92-191 18-126 (195)
144 PRK03612 spermidine synthase; 99.0 1.8E-09 3.9E-14 93.4 8.8 101 91-191 297-408 (521)
145 COG2263 Predicted RNA methylas 99.0 6.3E-09 1.4E-13 77.3 10.4 72 91-169 45-116 (198)
146 PF05724 TPMT: Thiopurine S-me 99.0 2.8E-09 6E-14 82.3 8.2 101 89-191 35-148 (218)
147 PRK11783 rlmL 23S rRNA m(2)G24 99.0 3.4E-09 7.3E-14 94.7 9.5 98 91-191 538-649 (702)
148 PF10294 Methyltransf_16: Puta 98.9 9.4E-09 2E-13 76.6 10.0 102 89-191 43-149 (173)
149 COG0220 Predicted S-adenosylme 98.9 5.1E-09 1.1E-13 81.1 7.9 96 93-191 50-157 (227)
150 KOG0820 Ribosomal RNA adenine 98.9 1E-08 2.3E-13 80.0 9.4 89 76-171 45-133 (315)
151 PF01596 Methyltransf_3: O-met 98.9 1.9E-08 4.1E-13 76.9 10.4 135 52-191 7-148 (205)
152 PRK10909 rsmD 16S rRNA m(2)G96 98.9 1.4E-08 3E-13 77.3 9.1 77 91-170 53-130 (199)
153 COG2519 GCD14 tRNA(1-methylade 98.9 3.7E-08 8E-13 76.5 11.4 103 80-191 85-188 (256)
154 KOG3045 Predicted RNA methylas 98.8 7.7E-09 1.7E-13 80.2 6.7 90 78-191 168-257 (325)
155 PRK15128 23S rRNA m(5)C1962 me 98.8 1.4E-08 3.1E-13 84.9 8.9 98 91-191 220-332 (396)
156 TIGR00479 rumA 23S rRNA (uraci 98.8 1.9E-08 4.1E-13 85.2 9.4 75 90-168 291-369 (431)
157 PRK04148 hypothetical protein; 98.8 7.7E-08 1.7E-12 68.3 10.8 96 77-188 4-101 (134)
158 PF05148 Methyltransf_8: Hypot 98.8 1.5E-08 3.3E-13 76.6 7.5 91 79-191 61-151 (219)
159 COG4122 Predicted O-methyltran 98.8 4.3E-08 9.3E-13 75.3 9.8 107 80-191 49-159 (219)
160 TIGR02085 meth_trns_rumB 23S r 98.8 2.9E-08 6.4E-13 82.6 9.7 74 91-168 233-307 (374)
161 KOG3420 Predicted RNA methylas 98.8 2.8E-08 6E-13 70.8 7.1 100 66-171 25-124 (185)
162 PRK11727 23S rRNA mA1618 methy 98.8 3.2E-08 7E-13 80.3 8.5 82 91-172 114-200 (321)
163 PF03141 Methyltransf_29: Puta 98.8 4.9E-09 1.1E-13 88.2 3.8 92 94-191 120-212 (506)
164 COG0030 KsgA Dimethyladenosine 98.8 5.6E-08 1.2E-12 76.3 9.4 86 77-170 18-104 (259)
165 PLN02672 methionine S-methyltr 98.8 2.5E-08 5.3E-13 91.7 8.4 77 92-168 119-210 (1082)
166 PRK10611 chemotaxis methyltran 98.7 2.2E-08 4.7E-13 80.2 6.4 100 92-191 116-255 (287)
167 KOG1499 Protein arginine N-met 98.7 5.1E-08 1.1E-12 78.7 8.3 77 91-170 60-136 (346)
168 KOG2899 Predicted methyltransf 98.7 4.7E-08 1E-12 75.2 7.6 101 91-191 58-202 (288)
169 KOG2904 Predicted methyltransf 98.7 1.3E-07 2.9E-12 74.0 9.5 94 75-169 131-230 (328)
170 PF01739 CheR: CheR methyltran 98.7 3.5E-08 7.5E-13 74.9 6.2 101 91-191 31-168 (196)
171 PF06080 DUF938: Protein of un 98.7 1.2E-07 2.6E-12 71.8 8.8 96 94-191 28-134 (204)
172 PLN02476 O-methyltransferase 98.7 3.3E-07 7.2E-12 73.0 11.7 107 80-191 108-221 (278)
173 COG0421 SpeE Spermidine syntha 98.7 2.1E-07 4.5E-12 74.3 10.2 98 93-191 78-183 (282)
174 KOG1331 Predicted methyltransf 98.7 2.7E-08 5.8E-13 78.3 5.0 89 91-191 45-136 (293)
175 PRK01544 bifunctional N5-gluta 98.7 1E-07 2.2E-12 82.2 8.9 99 91-191 347-455 (506)
176 COG3963 Phospholipid N-methylt 98.7 2.6E-07 5.6E-12 67.4 9.3 106 77-191 36-149 (194)
177 PF08704 GCD14: tRNA methyltra 98.7 1.6E-07 3.5E-12 73.6 8.7 104 80-191 31-139 (247)
178 PRK00050 16S rRNA m(4)C1402 me 98.6 1.4E-07 2.9E-12 75.9 7.7 89 78-172 8-101 (296)
179 PF05185 PRMT5: PRMT5 arginine 98.6 4.6E-07 1E-11 76.9 11.3 98 92-191 187-290 (448)
180 PLN02823 spermine synthase 98.6 5.3E-07 1.1E-11 73.9 10.9 101 91-191 103-213 (336)
181 PF01170 UPF0020: Putative RNA 98.6 1.7E-07 3.6E-12 70.3 7.4 118 70-190 9-143 (179)
182 TIGR00478 tly hemolysin TlyA f 98.6 6.1E-07 1.3E-11 69.7 9.9 40 90-130 74-113 (228)
183 COG1352 CheR Methylase of chem 98.5 1.6E-06 3.4E-11 68.8 10.3 117 75-191 79-234 (268)
184 PRK04338 N(2),N(2)-dimethylgua 98.5 1.5E-06 3.3E-11 72.5 10.5 94 92-191 58-151 (382)
185 TIGR02143 trmA_only tRNA (urac 98.5 9E-07 1.9E-11 73.2 8.4 58 93-154 199-256 (353)
186 PF00398 RrnaAD: Ribosomal RNA 98.4 1.5E-06 3.2E-11 69.1 9.3 90 73-170 14-106 (262)
187 PLN02589 caffeoyl-CoA O-methyl 98.4 1.3E-06 2.8E-11 68.6 8.9 107 80-191 69-183 (247)
188 PRK05031 tRNA (uracil-5-)-meth 98.4 7.1E-07 1.5E-11 74.0 7.7 58 93-154 208-265 (362)
189 PRK00536 speE spermidine synth 98.4 4.8E-06 1E-10 65.8 11.3 110 69-191 53-164 (262)
190 TIGR00095 RNA methyltransferas 98.4 6.2E-06 1.3E-10 62.4 11.4 76 91-168 49-128 (189)
191 COG0500 SmtA SAM-dependent met 98.4 4.9E-06 1.1E-10 58.7 10.0 92 95-191 52-148 (257)
192 KOG1269 SAM-dependent methyltr 98.4 8.1E-07 1.7E-11 73.4 6.4 101 89-191 108-208 (364)
193 KOG1661 Protein-L-isoaspartate 98.4 3.1E-06 6.8E-11 64.0 8.9 104 79-184 70-183 (237)
194 KOG1500 Protein arginine N-met 98.3 1.1E-05 2.3E-10 65.3 11.7 97 91-191 177-275 (517)
195 PF01564 Spermine_synth: Sperm 98.3 2.4E-06 5.2E-11 67.2 8.0 101 91-191 76-184 (246)
196 PF09243 Rsm22: Mitochondrial 98.3 5.8E-06 1.2E-10 66.1 9.7 95 91-188 33-131 (274)
197 PF07942 N2227: N2227-like pro 98.3 5E-06 1.1E-10 65.9 8.8 99 91-191 56-195 (270)
198 COG2265 TrmA SAM-dependent met 98.3 5.5E-06 1.2E-10 70.1 9.1 85 77-167 281-368 (432)
199 PF08123 DOT1: Histone methyla 98.3 2.4E-06 5.3E-11 65.3 6.4 110 79-191 32-151 (205)
200 COG1041 Predicted DNA modifica 98.2 9.6E-06 2.1E-10 66.0 9.7 113 73-191 181-303 (347)
201 PF02475 Met_10: Met-10+ like- 98.2 3.5E-06 7.5E-11 64.1 6.6 96 89-190 99-194 (200)
202 PF13679 Methyltransf_32: Meth 98.2 1.8E-05 4E-10 56.9 10.0 85 90-179 24-114 (141)
203 PF02527 GidB: rRNA small subu 98.2 8.4E-06 1.8E-10 61.3 8.4 93 91-190 48-140 (184)
204 PF05958 tRNA_U5-meth_tr: tRNA 98.2 7.6E-06 1.6E-10 67.7 8.2 58 93-154 198-255 (352)
205 COG2521 Predicted archaeal met 98.2 1.8E-06 4E-11 66.3 4.1 101 89-191 132-238 (287)
206 PRK11760 putative 23S rRNA C24 98.2 1.5E-05 3.3E-10 64.9 9.5 84 90-189 210-294 (357)
207 KOG3987 Uncharacterized conser 98.1 4.9E-07 1.1E-11 68.2 -0.3 86 92-190 113-198 (288)
208 PF09445 Methyltransf_15: RNA 98.1 4.1E-06 8.8E-11 61.6 4.4 72 94-168 2-76 (163)
209 COG1092 Predicted SAM-dependen 98.1 9.2E-06 2E-10 67.7 6.7 100 91-191 217-329 (393)
210 KOG3178 Hydroxyindole-O-methyl 98.1 2.5E-05 5.4E-10 63.5 8.9 88 93-191 179-268 (342)
211 COG0116 Predicted N6-adenine-s 98.1 2.8E-05 6.1E-10 64.2 9.3 102 65-169 167-307 (381)
212 PF12147 Methyltransf_20: Puta 98.1 0.00014 3E-09 57.9 12.8 100 91-191 135-242 (311)
213 TIGR01444 fkbM_fam methyltrans 98.1 1.4E-05 3.1E-10 57.2 6.7 56 94-151 1-56 (143)
214 TIGR03439 methyl_EasF probable 98.1 0.00012 2.6E-09 59.7 12.5 101 91-191 76-190 (319)
215 KOG3191 Predicted N6-DNA-methy 98.1 6.1E-05 1.3E-09 55.9 9.6 74 91-169 43-118 (209)
216 PRK11933 yebU rRNA (cytosine-C 98.0 7.8E-05 1.7E-09 63.8 10.9 101 89-191 111-235 (470)
217 PF03602 Cons_hypoth95: Conser 98.0 1.4E-05 3.1E-10 60.1 5.6 104 79-185 30-138 (183)
218 KOG2352 Predicted spermine/spe 98.0 7.1E-05 1.5E-09 63.3 9.8 97 91-191 47-154 (482)
219 PRK11783 rlmL 23S rRNA m(2)G24 97.9 5.1E-05 1.1E-09 68.2 9.0 98 70-169 170-311 (702)
220 PF01728 FtsJ: FtsJ-like methy 97.9 1E-05 2.2E-10 60.5 3.2 36 91-126 23-59 (181)
221 PF07091 FmrO: Ribosomal RNA m 97.9 9.1E-05 2E-09 57.8 8.1 81 90-174 104-184 (251)
222 TIGR00006 S-adenosyl-methyltra 97.9 9.1E-05 2E-09 59.8 8.3 90 78-172 9-103 (305)
223 PF11968 DUF3321: Putative met 97.8 2.8E-05 6.1E-10 59.3 4.9 79 93-191 53-137 (219)
224 PF02384 N6_Mtase: N-6 DNA Met 97.8 6.6E-05 1.4E-09 60.9 7.0 81 89-169 44-133 (311)
225 PF10672 Methyltrans_SAM: S-ad 97.7 5E-05 1.1E-09 60.9 4.8 100 91-191 123-231 (286)
226 COG0357 GidB Predicted S-adeno 97.7 0.00059 1.3E-08 52.5 10.4 76 92-170 68-144 (215)
227 TIGR02987 met_A_Alw26 type II 97.7 0.00018 4E-09 62.6 8.2 75 92-168 32-119 (524)
228 COG0293 FtsJ 23S rRNA methylas 97.7 0.00037 8E-09 53.0 8.7 77 80-170 35-120 (205)
229 KOG2187 tRNA uracil-5-methyltr 97.7 0.0001 2.3E-09 62.6 6.1 60 90-153 382-441 (534)
230 PF04816 DUF633: Family of unk 97.7 0.00015 3.2E-09 55.5 6.3 73 95-169 1-74 (205)
231 COG2520 Predicted methyltransf 97.6 0.00036 7.8E-09 57.2 8.8 79 89-170 186-265 (341)
232 TIGR00308 TRM1 tRNA(guanine-26 97.6 0.00022 4.7E-09 59.4 7.6 93 92-190 45-139 (374)
233 PF04672 Methyltransf_19: S-ad 97.6 0.00086 1.9E-08 53.0 10.1 113 76-191 54-183 (267)
234 PF03059 NAS: Nicotianamine sy 97.6 0.00035 7.5E-09 55.7 7.7 100 92-191 121-223 (276)
235 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.6 0.00014 3E-09 57.4 5.1 99 91-191 56-192 (256)
236 KOG1709 Guanidinoacetate methy 97.5 0.00096 2.1E-08 51.0 9.2 98 90-191 100-199 (271)
237 COG1189 Predicted rRNA methyla 97.5 0.0017 3.7E-08 50.3 9.9 101 80-191 66-171 (245)
238 COG4076 Predicted RNA methylas 97.5 0.00029 6.4E-09 52.7 5.3 91 93-189 34-126 (252)
239 COG0144 Sun tRNA and rRNA cyto 97.4 0.0023 5E-08 53.1 10.9 112 77-191 143-281 (355)
240 PF05971 Methyltransf_10: Prot 97.4 0.00058 1.3E-08 55.0 6.9 82 93-174 104-190 (299)
241 COG0742 N6-adenine-specific me 97.4 0.0014 3.1E-08 49.1 8.3 90 79-170 31-123 (187)
242 KOG2915 tRNA(1-methyladenosine 97.4 0.0036 7.7E-08 49.5 10.7 95 89-189 103-200 (314)
243 PRK10742 putative methyltransf 97.3 0.002 4.3E-08 50.5 8.4 79 93-173 90-176 (250)
244 COG2384 Predicted SAM-dependen 97.1 0.0042 9E-08 47.7 8.7 77 91-169 16-93 (226)
245 KOG1663 O-methyltransferase [S 97.1 0.0061 1.3E-07 47.0 9.4 97 91-191 73-176 (237)
246 KOG2730 Methylase [General fun 97.0 0.0018 3.9E-08 49.6 5.9 88 78-169 82-173 (263)
247 KOG2798 Putative trehalase [Ca 97.0 0.004 8.8E-08 50.2 7.9 136 54-191 111-289 (369)
248 KOG3201 Uncharacterized conser 97.0 0.00029 6.3E-09 51.4 1.3 98 91-190 29-132 (201)
249 PF01795 Methyltransf_5: MraW 97.0 0.0021 4.6E-08 52.0 6.1 89 78-171 9-103 (310)
250 PF01269 Fibrillarin: Fibrilla 96.9 0.0064 1.4E-07 46.8 7.6 119 66-191 47-171 (229)
251 PF04445 SAM_MT: Putative SAM- 96.8 0.0044 9.6E-08 48.2 6.5 79 93-173 77-163 (234)
252 COG3897 Predicted methyltransf 96.8 0.0044 9.6E-08 46.7 6.2 77 91-174 79-155 (218)
253 PF02636 Methyltransf_28: Puta 96.8 0.0083 1.8E-07 47.3 8.0 45 92-136 19-71 (252)
254 KOG3115 Methyltransferase-like 96.6 0.0032 7E-08 47.7 4.3 44 94-137 63-106 (249)
255 COG4262 Predicted spermidine s 96.5 0.019 4.1E-07 47.4 8.6 101 91-191 289-400 (508)
256 PLN02668 indole-3-acetate carb 96.5 0.011 2.5E-07 49.3 7.4 88 92-179 64-180 (386)
257 COG1889 NOP1 Fibrillarin-like 96.5 0.034 7.3E-07 42.3 8.8 68 65-132 49-117 (231)
258 KOG2793 Putative N2,N2-dimethy 96.2 0.026 5.6E-07 44.4 7.5 96 92-188 87-189 (248)
259 PF01189 Nol1_Nop2_Fmu: NOL1/N 96.2 0.0058 1.3E-07 49.1 4.1 77 89-167 83-162 (283)
260 COG0275 Predicted S-adenosylme 96.2 0.033 7.2E-07 44.8 8.1 90 78-172 12-107 (314)
261 KOG4589 Cell division protein 96.0 0.0094 2E-07 44.7 3.9 70 89-171 67-146 (232)
262 KOG0822 Protein kinase inhibit 95.9 0.046 1E-06 47.2 7.9 116 74-191 349-471 (649)
263 COG4798 Predicted methyltransf 95.9 0.044 9.6E-07 41.5 6.8 100 89-191 46-159 (238)
264 COG1565 Uncharacterized conser 95.7 0.068 1.5E-06 44.1 7.8 64 74-137 59-131 (370)
265 PF13578 Methyltransf_24: Meth 95.7 0.0012 2.6E-08 44.8 -2.0 90 96-191 1-98 (106)
266 PF07757 AdoMet_MTase: Predict 95.5 0.091 2E-06 35.8 6.8 32 91-124 58-89 (112)
267 PF01861 DUF43: Protein of unk 95.4 0.28 6E-06 38.4 10.1 94 91-189 44-139 (243)
268 COG4301 Uncharacterized conser 95.4 0.32 7E-06 38.3 10.2 98 92-191 79-186 (321)
269 cd00315 Cyt_C5_DNA_methylase C 95.3 0.084 1.8E-06 42.2 7.2 70 94-172 2-73 (275)
270 KOG4058 Uncharacterized conser 95.2 0.063 1.4E-06 38.9 5.5 94 80-179 63-156 (199)
271 PF01555 N6_N4_Mtase: DNA meth 95.2 0.082 1.8E-06 40.2 6.6 53 76-133 179-231 (231)
272 PF03492 Methyltransf_7: SAM d 94.8 0.11 2.4E-06 42.8 6.8 85 92-176 17-122 (334)
273 COG5459 Predicted rRNA methyla 94.8 0.14 3E-06 42.3 7.1 98 91-191 113-218 (484)
274 PRK11524 putative methyltransf 94.7 0.14 3E-06 41.2 7.0 47 89-137 206-252 (284)
275 KOG2651 rRNA adenine N-6-methy 94.7 0.14 3E-06 42.6 6.9 42 91-133 153-194 (476)
276 PF11599 AviRa: RRNA methyltra 94.7 0.061 1.3E-06 41.3 4.5 60 76-135 34-97 (246)
277 KOG1501 Arginine N-methyltrans 94.6 0.17 3.7E-06 43.0 7.4 54 94-149 69-122 (636)
278 PHA01634 hypothetical protein 94.6 0.28 6E-06 34.7 7.1 47 89-136 26-72 (156)
279 COG0286 HsdM Type I restrictio 94.3 0.4 8.8E-06 41.6 9.4 97 70-169 166-272 (489)
280 KOG1099 SAM-dependent methyltr 94.3 0.26 5.6E-06 38.4 7.2 87 92-191 42-156 (294)
281 PF11312 DUF3115: Protein of u 94.3 0.097 2.1E-06 42.4 5.0 99 93-191 88-235 (315)
282 COG3129 Predicted SAM-dependen 94.2 0.17 3.6E-06 39.4 6.0 95 79-173 62-165 (292)
283 PF04989 CmcI: Cephalosporin h 94.1 0.35 7.6E-06 37.0 7.5 97 91-191 32-140 (206)
284 cd08283 FDH_like_1 Glutathione 93.8 0.57 1.2E-05 39.1 9.1 94 90-191 183-299 (386)
285 PTZ00357 methyltransferase; Pr 93.8 0.49 1.1E-05 42.6 8.7 97 94-190 703-823 (1072)
286 KOG2920 Predicted methyltransf 93.6 0.096 2.1E-06 41.8 3.8 39 89-128 114-152 (282)
287 PF03141 Methyltransf_29: Puta 93.6 0.12 2.6E-06 44.4 4.6 86 93-191 367-460 (506)
288 PRK13699 putative methylase; P 93.5 0.35 7.6E-06 37.6 6.8 47 89-137 161-207 (227)
289 COG1064 AdhP Zn-dependent alco 93.3 0.55 1.2E-05 38.7 7.8 72 89-170 164-238 (339)
290 KOG1596 Fibrillarin and relate 93.1 0.45 9.8E-06 37.4 6.7 70 65-134 129-204 (317)
291 PF06962 rRNA_methylase: Putat 92.8 0.28 6E-06 35.2 4.9 74 117-191 1-85 (140)
292 KOG0821 Predicted ribosomal RN 92.7 0.76 1.6E-05 35.7 7.3 93 54-153 15-108 (326)
293 KOG1562 Spermidine synthase [A 92.4 0.3 6.6E-06 39.4 5.0 101 91-191 121-229 (337)
294 COG1867 TRM1 N2,N2-dimethylgua 91.9 0.54 1.2E-05 39.0 6.1 92 92-189 53-145 (380)
295 PRK09424 pntA NAD(P) transhydr 91.6 2 4.2E-05 37.6 9.5 92 90-191 163-278 (509)
296 COG4627 Uncharacterized protei 91.3 0.024 5.3E-07 41.2 -2.0 40 152-191 38-79 (185)
297 KOG1122 tRNA and rRNA cytosine 91.0 0.89 1.9E-05 38.4 6.5 76 89-167 239-318 (460)
298 COG1063 Tdh Threonine dehydrog 90.6 2.4 5.1E-05 35.1 8.8 87 91-191 168-262 (350)
299 KOG2539 Mitochondrial/chloropl 90.1 0.88 1.9E-05 38.9 5.9 85 91-178 200-291 (491)
300 PF05206 TRM13: Methyltransfer 89.9 0.92 2E-05 36.1 5.6 36 90-125 17-57 (259)
301 KOG3924 Putative protein methy 88.2 2 4.4E-05 36.0 6.6 137 49-191 154-301 (419)
302 KOG1227 Putative methyltransfe 87.3 0.58 1.3E-05 37.9 2.8 73 91-166 194-267 (351)
303 PF02005 TRM: N2,N2-dimethylgu 87.2 2.5 5.5E-05 35.5 6.7 93 92-189 50-145 (377)
304 PRK09880 L-idonate 5-dehydroge 86.5 5.1 0.00011 32.7 8.2 43 91-133 169-212 (343)
305 PF05050 Methyltransf_21: Meth 86.4 1.7 3.6E-05 31.1 4.8 38 97-134 1-42 (167)
306 PF11899 DUF3419: Protein of u 86.3 2.5 5.4E-05 35.6 6.2 45 89-135 33-77 (380)
307 PRK01747 mnmC bifunctional tRN 86.2 3.7 8E-05 37.0 7.7 102 90-191 56-199 (662)
308 TIGR00561 pntA NAD(P) transhyd 85.9 3.1 6.8E-05 36.3 6.8 90 91-191 163-277 (511)
309 KOG1201 Hydroxysteroid 17-beta 85.8 5.2 0.00011 32.4 7.5 78 91-174 37-127 (300)
310 cd08254 hydroxyacyl_CoA_DH 6-h 85.0 10 0.00022 30.4 9.2 43 90-133 164-207 (338)
311 KOG0024 Sorbitol dehydrogenase 84.9 2.3 5E-05 34.9 5.2 45 89-133 167-212 (354)
312 PF12692 Methyltransf_17: S-ad 84.8 3.3 7.2E-05 30.0 5.4 34 91-124 28-61 (160)
313 COG2933 Predicted SAM-dependen 84.0 5.8 0.00013 31.8 6.9 68 91-170 211-279 (358)
314 COG1255 Uncharacterized protei 83.6 6.6 0.00014 27.2 6.2 79 92-188 14-94 (129)
315 PRK08339 short chain dehydroge 83.4 10 0.00022 29.6 8.4 78 91-172 7-96 (263)
316 KOG2671 Putative RNA methylase 83.4 0.97 2.1E-05 37.3 2.5 90 89-188 206-303 (421)
317 PF04072 LCM: Leucine carboxyl 83.2 16 0.00036 27.0 9.1 84 91-175 77-171 (183)
318 KOG2078 tRNA modification enzy 83.1 1.3 2.9E-05 37.5 3.2 52 84-137 242-293 (495)
319 COG3510 CmcI Cephalosporin hyd 82.7 3.5 7.5E-05 31.4 4.9 91 91-188 69-170 (237)
320 PRK05867 short chain dehydroge 82.3 12 0.00027 28.8 8.4 78 91-173 8-98 (253)
321 KOG1098 Putative SAM-dependent 82.2 1.9 4.2E-05 38.3 4.0 37 89-125 42-79 (780)
322 PRK07417 arogenate dehydrogena 82.2 6.2 0.00013 31.4 6.7 81 94-191 2-84 (279)
323 KOG2811 Uncharacterized conser 81.6 5.1 0.00011 33.5 5.9 36 91-126 182-220 (420)
324 KOG2198 tRNA cytosine-5-methyl 81.4 6.3 0.00014 32.9 6.5 48 89-136 153-204 (375)
325 KOG2782 Putative SAM dependent 81.3 1.2 2.7E-05 34.5 2.2 56 78-135 32-87 (303)
326 COG0300 DltE Short-chain dehyd 80.5 27 0.00059 27.9 9.6 81 91-175 5-98 (265)
327 PRK05854 short chain dehydroge 80.5 15 0.00033 29.6 8.5 78 92-172 14-104 (313)
328 PF03514 GRAS: GRAS domain fam 80.4 33 0.00072 28.8 10.7 96 78-175 99-214 (374)
329 PRK06194 hypothetical protein; 80.4 25 0.00055 27.6 9.7 76 92-173 6-95 (287)
330 PRK07904 short chain dehydroge 79.4 16 0.00035 28.4 8.1 77 91-171 7-97 (253)
331 KOG1209 1-Acyl dihydroxyaceton 79.3 16 0.00035 28.5 7.6 76 91-174 6-94 (289)
332 TIGR00675 dcm DNA-methyltransf 79.2 6.5 0.00014 32.1 6.0 66 95-169 1-67 (315)
333 cd05188 MDR Medium chain reduc 79.0 21 0.00044 27.3 8.6 43 90-133 133-176 (271)
334 PRK05876 short chain dehydroge 78.9 17 0.00036 28.7 8.2 77 92-173 6-95 (275)
335 cd08232 idonate-5-DH L-idonate 78.9 13 0.00028 30.1 7.7 43 91-133 165-208 (339)
336 PF02254 TrkA_N: TrkA-N domain 78.7 4.9 0.00011 27.1 4.5 61 100-169 4-70 (116)
337 COG0270 Dcm Site-specific DNA 78.7 8.2 0.00018 31.7 6.5 73 93-173 4-79 (328)
338 PRK08217 fabG 3-ketoacyl-(acyl 78.6 12 0.00027 28.5 7.2 74 92-171 5-92 (253)
339 PRK06172 short chain dehydroge 78.6 16 0.00035 28.1 7.9 75 92-171 7-94 (253)
340 KOG1252 Cystathionine beta-syn 78.4 3.2 7E-05 34.2 3.9 51 76-130 200-254 (362)
341 PRK08267 short chain dehydroge 78.2 15 0.00032 28.4 7.6 72 94-172 3-88 (260)
342 PRK06125 short chain dehydroge 78.1 19 0.00041 27.8 8.2 77 92-172 7-92 (259)
343 PRK07890 short chain dehydroge 78.1 14 0.0003 28.4 7.4 75 92-171 5-92 (258)
344 COG1568 Predicted methyltransf 77.7 11 0.00023 30.5 6.5 86 91-187 152-239 (354)
345 PRK07097 gluconate 5-dehydroge 77.6 20 0.00043 27.9 8.2 77 91-172 9-98 (265)
346 COG5379 BtaA S-adenosylmethion 77.1 10 0.00022 30.9 6.3 46 89-136 61-106 (414)
347 PRK06124 gluconate 5-dehydroge 76.8 21 0.00045 27.5 8.1 76 91-172 10-99 (256)
348 PRK07478 short chain dehydroge 76.7 21 0.00046 27.4 8.1 76 92-172 6-94 (254)
349 PRK07063 short chain dehydroge 76.4 28 0.0006 26.9 8.7 79 91-172 6-97 (260)
350 COG0287 TyrA Prephenate dehydr 76.4 10 0.00023 30.4 6.3 85 93-191 4-91 (279)
351 PRK07035 short chain dehydroge 76.3 21 0.00046 27.3 8.0 75 92-171 8-95 (252)
352 TIGR00497 hsdM type I restrict 76.1 31 0.00068 30.1 9.6 79 91-169 217-301 (501)
353 PRK08703 short chain dehydroge 75.9 23 0.00051 26.9 8.1 76 92-171 6-97 (239)
354 PRK07102 short chain dehydroge 75.8 21 0.00045 27.3 7.8 72 94-170 3-85 (243)
355 PRK07062 short chain dehydroge 75.6 32 0.00069 26.6 8.9 79 91-172 7-98 (265)
356 PRK07819 3-hydroxybutyryl-CoA 75.3 10 0.00023 30.4 6.1 42 93-136 6-49 (286)
357 PRK07024 short chain dehydroge 75.0 25 0.00054 27.2 8.1 74 93-172 3-89 (257)
358 PRK05866 short chain dehydroge 74.8 27 0.00058 27.9 8.4 77 92-173 40-129 (293)
359 PF03686 UPF0146: Uncharacteri 74.6 12 0.00026 26.4 5.4 79 91-187 13-93 (127)
360 PRK06139 short chain dehydroge 74.6 21 0.00045 29.3 7.8 77 91-172 6-95 (330)
361 PRK07814 short chain dehydroge 74.5 19 0.00041 28.0 7.3 75 91-171 9-97 (263)
362 PRK13394 3-hydroxybutyrate deh 74.3 31 0.00067 26.5 8.5 76 92-173 7-96 (262)
363 PRK06196 oxidoreductase; Provi 74.2 25 0.00054 28.3 8.1 72 91-172 25-110 (315)
364 PF10237 N6-adenineMlase: Prob 74.0 12 0.00025 27.6 5.5 80 75-168 9-93 (162)
365 KOG2352 Predicted spermine/spe 73.9 2.4 5.3E-05 36.5 2.2 46 91-136 295-340 (482)
366 PRK05872 short chain dehydroge 73.9 25 0.00054 28.0 8.0 76 91-172 8-96 (296)
367 PRK08277 D-mannonate oxidoredu 73.8 40 0.00087 26.3 9.1 76 92-172 10-98 (278)
368 PRK08340 glucose-1-dehydrogena 73.6 21 0.00045 27.7 7.3 72 94-171 2-86 (259)
369 PRK09291 short chain dehydroge 73.6 26 0.00057 26.8 7.9 74 93-171 3-83 (257)
370 PRK06113 7-alpha-hydroxysteroi 73.4 28 0.0006 26.8 8.0 76 91-171 10-98 (255)
371 PRK05708 2-dehydropantoate 2-r 73.4 30 0.00066 27.9 8.4 90 94-191 4-97 (305)
372 PRK07454 short chain dehydroge 73.2 34 0.00074 26.0 8.4 76 92-173 6-95 (241)
373 PF00106 adh_short: short chai 73.0 11 0.00023 26.9 5.2 76 94-173 2-92 (167)
374 PRK08589 short chain dehydroge 72.9 27 0.00059 27.3 7.9 75 92-172 6-93 (272)
375 PF02153 PDH: Prephenate dehyd 72.2 6 0.00013 31.2 4.0 71 106-191 2-72 (258)
376 PRK08085 gluconate 5-dehydroge 72.2 35 0.00075 26.2 8.3 76 91-171 8-96 (254)
377 PRK07109 short chain dehydroge 72.1 38 0.00082 27.7 8.8 76 92-172 8-96 (334)
378 KOG2912 Predicted DNA methylas 71.9 15 0.00032 30.3 6.0 74 95-170 106-187 (419)
379 PRK10458 DNA cytosine methylas 71.7 56 0.0012 28.4 9.9 43 92-135 88-130 (467)
380 PRK07502 cyclohexadienyl dehyd 71.3 23 0.0005 28.6 7.3 41 93-133 7-49 (307)
381 COG1086 Predicted nucleoside-d 71.2 26 0.00056 31.1 7.8 83 91-175 249-339 (588)
382 PRK08265 short chain dehydroge 71.0 25 0.00054 27.3 7.3 72 92-171 6-90 (261)
383 PRK07453 protochlorophyllide o 70.8 34 0.00074 27.5 8.2 77 91-172 5-94 (322)
384 PRK08643 acetoin reductase; Va 70.7 35 0.00076 26.2 8.0 75 93-172 3-90 (256)
385 COG0541 Ffh Signal recognition 70.7 17 0.00036 31.2 6.3 115 72-191 73-214 (451)
386 PF00107 ADH_zinc_N: Zinc-bind 70.7 16 0.00034 24.9 5.5 75 101-190 1-81 (130)
387 PRK09072 short chain dehydroge 70.4 40 0.00087 26.0 8.3 76 92-173 5-92 (263)
388 PF01488 Shikimate_DH: Shikima 70.0 11 0.00024 26.5 4.6 75 91-173 11-87 (135)
389 TIGR01202 bchC 2-desacetyl-2-h 69.8 29 0.00062 27.9 7.5 41 91-131 144-185 (308)
390 PRK05650 short chain dehydroge 69.7 37 0.00081 26.4 8.0 75 94-173 2-89 (270)
391 PRK06949 short chain dehydroge 69.5 40 0.00088 25.8 8.1 75 91-171 8-96 (258)
392 PRK07791 short chain dehydroge 69.4 36 0.00078 27.0 7.9 78 91-173 5-104 (286)
393 PRK06197 short chain dehydroge 69.2 46 0.00099 26.5 8.6 78 91-172 15-106 (306)
394 PRK08945 putative oxoacyl-(acy 69.2 27 0.00058 26.7 7.0 76 91-171 11-102 (247)
395 PRK08213 gluconate 5-dehydroge 69.2 36 0.00079 26.2 7.8 76 91-172 11-100 (259)
396 PRK07523 gluconate 5-dehydroge 69.2 42 0.00091 25.7 8.2 76 91-172 9-98 (255)
397 COG0863 DNA modification methy 69.0 24 0.00052 28.0 6.9 47 89-137 220-266 (302)
398 KOG0725 Reductases with broad 68.9 46 0.00099 26.5 8.3 82 91-174 7-102 (270)
399 PRK05599 hypothetical protein; 68.8 38 0.00082 26.1 7.8 74 94-172 2-88 (246)
400 PRK12939 short chain dehydroge 68.4 33 0.00071 26.1 7.4 74 92-171 7-94 (250)
401 KOG1205 Predicted dehydrogenas 68.1 35 0.00076 27.5 7.5 80 91-173 11-103 (282)
402 PRK09242 tropinone reductase; 68.0 44 0.00096 25.7 8.1 78 91-171 8-98 (257)
403 cd08230 glucose_DH Glucose deh 67.9 41 0.0009 27.4 8.2 87 91-191 172-262 (355)
404 PRK07576 short chain dehydroge 67.8 45 0.00098 25.9 8.1 75 91-171 8-96 (264)
405 TIGR02356 adenyl_thiF thiazole 67.4 16 0.00035 27.7 5.3 33 91-124 20-54 (202)
406 PLN02780 ketoreductase/ oxidor 67.0 64 0.0014 26.2 9.1 79 91-172 52-143 (320)
407 PRK12481 2-deoxy-D-gluconate 3 67.0 43 0.00093 25.8 7.8 76 91-173 7-95 (251)
408 cd08234 threonine_DH_like L-th 66.7 52 0.0011 26.3 8.5 44 90-133 158-202 (334)
409 PF02719 Polysacc_synt_2: Poly 66.6 12 0.00026 30.4 4.6 75 100-175 5-91 (293)
410 PRK06935 2-deoxy-D-gluconate 3 66.4 41 0.00089 25.9 7.6 76 91-172 14-102 (258)
411 PRK08251 short chain dehydroge 66.3 56 0.0012 24.9 8.3 76 93-172 3-92 (248)
412 PRK07231 fabG 3-ketoacyl-(acyl 66.1 45 0.00097 25.3 7.7 74 92-171 5-91 (251)
413 cd01065 NAD_bind_Shikimate_DH 65.8 33 0.00072 24.2 6.5 43 91-134 18-62 (155)
414 PRK06200 2,3-dihydroxy-2,3-dih 65.7 43 0.00093 25.9 7.6 73 92-172 6-91 (263)
415 PRK12548 shikimate 5-dehydroge 65.5 38 0.00082 27.2 7.3 81 91-173 125-211 (289)
416 PLN02253 xanthoxin dehydrogena 65.3 44 0.00096 26.1 7.7 73 92-171 18-104 (280)
417 PRK06720 hypothetical protein; 65.3 52 0.0011 24.1 8.5 79 91-174 15-106 (169)
418 PRK05855 short chain dehydroge 64.9 43 0.00094 29.1 8.2 75 93-173 316-404 (582)
419 PRK07677 short chain dehydroge 64.8 48 0.001 25.4 7.7 74 93-171 2-88 (252)
420 PF00145 DNA_methylase: C-5 cy 64.7 19 0.00041 28.8 5.6 66 94-170 2-70 (335)
421 PRK07792 fabG 3-ketoacyl-(acyl 64.6 53 0.0011 26.3 8.1 77 91-172 11-100 (306)
422 KOG1269 SAM-dependent methyltr 64.5 17 0.00037 30.5 5.2 44 92-135 181-224 (364)
423 PRK08226 short chain dehydroge 64.2 54 0.0012 25.2 7.9 74 92-172 6-93 (263)
424 cd01487 E1_ThiF_like E1_ThiF_l 64.1 32 0.00069 25.4 6.2 31 94-125 1-33 (174)
425 PF02558 ApbA: Ketopantoate re 64.0 12 0.00025 26.5 3.8 90 95-190 1-93 (151)
426 PRK07831 short chain dehydroge 63.3 44 0.00096 25.8 7.3 78 92-172 17-108 (262)
427 TIGR00518 alaDH alanine dehydr 63.1 16 0.00036 30.5 5.0 42 91-134 166-209 (370)
428 PRK07774 short chain dehydroge 62.9 63 0.0014 24.6 8.0 74 92-171 6-93 (250)
429 TIGR03206 benzo_BadH 2-hydroxy 62.2 67 0.0015 24.4 8.7 75 92-172 3-91 (250)
430 PRK08507 prephenate dehydrogen 62.1 32 0.0007 27.2 6.3 39 94-132 2-42 (275)
431 PRK06181 short chain dehydroge 62.1 70 0.0015 24.6 9.2 73 94-172 3-89 (263)
432 PRK05993 short chain dehydroge 61.9 49 0.0011 25.9 7.3 70 92-172 4-87 (277)
433 PRK09496 trkA potassium transp 61.4 91 0.002 26.4 9.3 67 91-168 230-304 (453)
434 PRK07074 short chain dehydroge 61.3 63 0.0014 24.8 7.8 73 93-172 3-88 (257)
435 PRK08416 7-alpha-hydroxysteroi 61.1 61 0.0013 25.0 7.7 77 91-171 7-97 (260)
436 PRK07825 short chain dehydroge 60.7 54 0.0012 25.5 7.4 72 92-172 5-89 (273)
437 PRK08324 short chain dehydroge 60.5 80 0.0017 28.7 9.2 77 91-173 421-510 (681)
438 PRK12921 2-dehydropantoate 2-r 60.5 62 0.0013 25.8 7.8 88 94-190 2-94 (305)
439 PRK11730 fadB multifunctional 60.4 37 0.00081 31.1 7.1 91 93-191 314-421 (715)
440 PRK12429 3-hydroxybutyrate deh 60.3 74 0.0016 24.2 8.7 76 93-174 5-94 (258)
441 PRK06522 2-dehydropantoate 2-r 60.0 85 0.0019 24.9 8.7 89 94-190 2-92 (304)
442 PRK03659 glutathione-regulated 59.5 20 0.00044 32.0 5.2 63 93-168 401-471 (601)
443 PRK08762 molybdopterin biosynt 58.9 30 0.00065 28.9 5.8 33 91-124 134-168 (376)
444 PRK08303 short chain dehydroge 58.8 61 0.0013 26.1 7.5 73 92-169 8-103 (305)
445 PRK08862 short chain dehydroge 58.5 68 0.0015 24.5 7.4 74 92-170 5-92 (227)
446 PF05711 TylF: Macrocin-O-meth 58.3 19 0.00041 28.4 4.3 37 90-126 73-114 (248)
447 PRK06914 short chain dehydroge 58.3 64 0.0014 25.1 7.5 75 93-171 4-91 (280)
448 COG1893 ApbA Ketopantoate redu 58.2 76 0.0017 25.8 7.9 91 94-191 2-94 (307)
449 cd05278 FDH_like Formaldehyde 57.6 63 0.0014 26.0 7.5 44 90-133 166-210 (347)
450 TIGR01832 kduD 2-deoxy-D-gluco 57.4 59 0.0013 24.7 7.0 75 91-172 4-91 (248)
451 COG0569 TrkA K+ transport syst 56.7 61 0.0013 25.0 6.9 66 94-168 2-73 (225)
452 PRK12823 benD 1,6-dihydroxycyc 56.4 76 0.0017 24.3 7.5 74 92-171 8-94 (260)
453 PRK07832 short chain dehydroge 56.1 79 0.0017 24.6 7.6 75 94-172 2-89 (272)
454 KOG1208 Dehydrogenases with di 55.4 1.2E+02 0.0025 24.9 9.0 80 92-174 35-127 (314)
455 PRK10669 putative cation:proto 54.8 29 0.00063 30.6 5.3 62 93-167 418-487 (558)
456 cd08245 CAD Cinnamyl alcohol d 54.6 1.1E+02 0.0024 24.4 8.7 43 90-133 161-204 (330)
457 PF02737 3HCDH_N: 3-hydroxyacy 54.5 40 0.00086 25.0 5.3 89 95-191 2-107 (180)
458 cd08293 PTGR2 Prostaglandin re 54.5 1E+02 0.0022 24.8 8.2 41 93-133 156-198 (345)
459 COG1748 LYS9 Saccharopine dehy 54.4 72 0.0016 27.0 7.3 70 93-170 2-77 (389)
460 TIGR02437 FadB fatty oxidation 54.0 56 0.0012 30.0 7.1 91 93-191 314-421 (714)
461 PRK06057 short chain dehydroge 54.0 74 0.0016 24.4 7.1 70 91-171 6-89 (255)
462 KOG2872 Uroporphyrinogen decar 53.7 81 0.0017 25.8 7.0 54 76-131 235-288 (359)
463 TIGR01963 PHB_DH 3-hydroxybuty 53.6 81 0.0018 23.9 7.2 72 94-171 3-88 (255)
464 PRK12743 oxidoreductase; Provi 53.5 98 0.0021 23.7 7.7 73 93-171 3-90 (256)
465 PRK07201 short chain dehydroge 53.4 80 0.0017 28.2 8.0 75 92-172 371-459 (657)
466 cd01842 SGNH_hydrolase_like_5 53.3 13 0.00029 27.8 2.5 34 157-190 46-91 (183)
467 PRK06180 short chain dehydroge 53.2 97 0.0021 24.2 7.7 73 93-173 5-90 (277)
468 PRK07688 thiamine/molybdopteri 53.2 45 0.00098 27.6 5.9 34 91-125 23-58 (339)
469 PF03269 DUF268: Caenorhabditi 52.9 7.1 0.00015 28.8 1.0 90 92-191 2-104 (177)
470 TIGR02685 pter_reduc_Leis pter 52.9 1.1E+02 0.0023 23.8 8.5 74 94-171 3-94 (267)
471 PRK08177 short chain dehydroge 52.8 75 0.0016 23.9 6.8 68 94-171 3-81 (225)
472 PRK06182 short chain dehydroge 52.8 94 0.002 24.1 7.6 69 93-173 4-86 (273)
473 PRK12475 thiamine/molybdopteri 52.7 50 0.0011 27.3 6.1 33 92-125 24-58 (338)
474 PRK08278 short chain dehydroge 52.6 92 0.002 24.3 7.5 76 92-172 6-101 (273)
475 PRK08628 short chain dehydroge 52.4 90 0.0019 23.9 7.3 74 91-171 6-93 (258)
476 PRK08268 3-hydroxy-acyl-CoA de 51.7 56 0.0012 28.7 6.5 42 92-135 7-50 (507)
477 KOG1371 UDP-glucose 4-epimeras 51.7 57 0.0012 27.0 6.0 76 93-172 3-88 (343)
478 cd00757 ThiF_MoeB_HesA_family 51.5 37 0.00081 26.1 4.9 33 92-125 21-55 (228)
479 COG0686 Ald Alanine dehydrogen 51.2 41 0.00089 27.8 5.1 94 91-191 167-261 (371)
480 TIGR00872 gnd_rel 6-phosphoglu 51.2 44 0.00096 26.9 5.5 37 95-133 3-41 (298)
481 cd08237 ribitol-5-phosphate_DH 50.9 39 0.00084 27.6 5.2 44 90-133 162-207 (341)
482 TIGR02632 RhaD_aldol-ADH rhamn 50.7 1E+02 0.0022 28.1 8.2 79 92-173 414-505 (676)
483 PRK05786 fabG 3-ketoacyl-(acyl 50.7 1.1E+02 0.0023 23.1 7.4 74 92-171 5-91 (238)
484 PRK00066 ldh L-lactate dehydro 50.5 88 0.0019 25.5 7.1 79 91-173 5-85 (315)
485 PRK12824 acetoacetyl-CoA reduc 50.3 1.1E+02 0.0023 23.1 7.5 74 94-172 4-91 (245)
486 PRK06249 2-dehydropantoate 2-r 50.3 1E+02 0.0022 24.9 7.5 31 93-125 6-38 (313)
487 PRK08993 2-deoxy-D-gluconate 3 50.1 1E+02 0.0022 23.7 7.2 75 91-172 9-96 (253)
488 PRK06035 3-hydroxyacyl-CoA deh 50.0 52 0.0011 26.2 5.7 40 93-134 4-45 (291)
489 PRK06940 short chain dehydroge 49.9 1.2E+02 0.0027 23.7 8.2 74 94-172 4-87 (275)
490 PF05059 Orbi_VP4: Orbivirus V 49.8 34 0.00073 30.4 4.7 47 77-123 176-226 (644)
491 PF11899 DUF3419: Protein of u 49.3 16 0.00036 30.7 2.8 51 141-191 273-327 (380)
492 PF06016 Reovirus_L2: Reovirus 49.1 23 0.00049 34.4 3.8 88 92-189 823-916 (1289)
493 PRK07533 enoyl-(acyl carrier p 49.0 1E+02 0.0022 23.9 7.1 76 91-172 9-99 (258)
494 PRK07066 3-hydroxybutyryl-CoA 48.9 58 0.0013 26.8 5.8 42 92-135 7-50 (321)
495 PF07101 DUF1363: Protein of u 48.6 6.7 0.00015 26.1 0.3 31 95-125 6-37 (124)
496 PLN02819 lysine-ketoglutarate 48.2 41 0.0009 32.3 5.4 72 92-171 569-658 (1042)
497 COG3967 DltE Short-chain dehyd 48.1 97 0.0021 24.1 6.4 75 91-174 4-91 (245)
498 TIGR03325 BphB_TodD cis-2,3-di 48.0 1.2E+02 0.0025 23.4 7.3 72 92-171 5-89 (262)
499 PRK06953 short chain dehydroge 47.7 1.2E+02 0.0025 22.7 7.9 68 94-172 3-81 (222)
500 PRK05717 oxidoreductase; Valid 47.7 1.2E+02 0.0027 23.1 7.4 73 91-172 9-95 (255)
No 1
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.93 E-value=8.5e-25 Score=169.03 Aligned_cols=136 Identities=22% Similarity=0.248 Sum_probs=117.7
Q ss_pred CHHHHHHHHHHhhhhcCCCc-----hHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChh
Q 029554 52 DRHLKRKQRDRAAWLTRPND-----SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYD 126 (191)
Q Consensus 52 d~~~~~~~~~~~a~~y~~~~-----~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~ 126 (191)
....+...|++.+..||..+ -.+....+.++..+. ..++.+|||||||||.++..+++..+..+|+++|+|+.
T Consensus 9 k~~~v~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~--~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ 86 (238)
T COG2226 9 KQEKVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLG--IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISES 86 (238)
T ss_pred cHHHHHHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhC--CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHH
Confidence 45677888999999998865 245556666776665 33789999999999999999998877889999999999
Q ss_pred HHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 127 MLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 127 ~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
|++.++++... ....++.++++|++.+||++++||+|.++++|++++|++.+|+|+.||||||
T Consensus 87 ML~~a~~k~~~--~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpg 149 (238)
T COG2226 87 MLEVAREKLKK--KGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPG 149 (238)
T ss_pred HHHHHHHHhhc--cCccceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCC
Confidence 99999999865 2233499999999999999999999999999999999999999999999997
No 2
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.90 E-value=2.4e-24 Score=162.56 Aligned_cols=160 Identities=58% Similarity=0.957 Sum_probs=138.8
Q ss_pred HhhcCCCceeccCCccccCCCccccCCCCCCccccCHHHHHHHHHHhhhhcCC-CchHHHHHHHHHHHHHHhcccCCCeE
Q 029554 17 RRANNEPYALVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTRP-NDSFVDAVAENLLDRLEDCRKTFPTA 95 (191)
Q Consensus 17 ~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~y~~-~~~~~~~~~~~l~~~l~~~~~~~~~V 95 (191)
+.+++...+.+.+.++.|+ +...+||+++++.+++|+++..|. .++++++++.++.+++.++++..+.+
T Consensus 7 ~~st~~~~~~l~sls~~t~----------s~~~iFDR~~KR~qrdrAa~~~d~k~dylkeeig~rlaDrvfD~kk~fp~a 76 (325)
T KOG2940|consen 7 EKSTKQAHTFLASLSFSTE----------SKVKIFDRDLKRIQRDRAAWLSDQKNDYLKEEIGDRLADRVFDCKKSFPTA 76 (325)
T ss_pred hhhHHHHHHHHHHhhccch----------hhhHhhhhHHHHHHHhHHhhcchhhhhHHHHHHHHHHHHHHHHHhhhCcce
Confidence 3344444455667777663 446899999999999999987665 58999999999999999999999999
Q ss_pred EEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcccCcC
Q 029554 96 LCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTN 175 (191)
Q Consensus 96 LDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~ 175 (191)
+|||||.|++...|...+ ..+++.+|.|..|++.|+... .....+...++|.+.++|.++++|+|++++++||++
T Consensus 77 ~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~q----dp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~N 151 (325)
T KOG2940|consen 77 FDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQ----DPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTN 151 (325)
T ss_pred eecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccC----CCceEEEEEecchhcccccccchhhhhhhhhhhhhc
Confidence 999999999999998876 789999999999999997653 234567888899999999999999999999999999
Q ss_pred ChHHHHHHHHhccCCC
Q 029554 176 DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 176 d~~~~l~~i~r~Lkpg 191 (191)
|++..+.++...||||
T Consensus 152 dLPg~m~~ck~~lKPD 167 (325)
T KOG2940|consen 152 DLPGSMIQCKLALKPD 167 (325)
T ss_pred cCchHHHHHHHhcCCC
Confidence 9999999999999996
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.90 E-value=1.4e-23 Score=163.19 Aligned_cols=135 Identities=24% Similarity=0.239 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhhhhcCCCchH-----HHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChh
Q 029554 53 RHLKRKQRDRAAWLTRPNDSF-----VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYD 126 (191)
Q Consensus 53 ~~~~~~~~~~~a~~y~~~~~~-----~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~ 126 (191)
.+.+...|++.+..||..+.+ ...+...+++.+. ..++.+|||+|||||.++..+++. ++..+|+++|+|++
T Consensus 6 ~~~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~--~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ 83 (233)
T PF01209_consen 6 EQYVRKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLG--LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPG 83 (233)
T ss_dssp -------------------------------SHHHHHHT----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HH
T ss_pred HHHHHHHHHHHHHHhCCCccccCCcHHHHHHHHHHhccC--CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHH
Confidence 445667788888888875332 2223334444443 457789999999999999998876 45679999999999
Q ss_pred HHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 127 MLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 127 ~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
|++.++++... ....++.++++|.+.+|+++++||+|++.+++++++|+...++|+.|+||||
T Consensus 84 ML~~a~~k~~~--~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPG 146 (233)
T PF01209_consen 84 MLEVARKKLKR--EGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPG 146 (233)
T ss_dssp HHHHHHHHHHH--TT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEE
T ss_pred HHHHHHHHHHh--hCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCC
Confidence 99999998865 3344899999999999999999999999999999999999999999999996
No 4
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.90 E-value=7.8e-23 Score=161.02 Aligned_cols=131 Identities=25% Similarity=0.364 Sum_probs=116.8
Q ss_pred ccCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHH
Q 029554 50 IFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLK 129 (191)
Q Consensus 50 ~~d~~~~~~~~~~~a~~y~~~~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~ 129 (191)
..|+..+...|++++..|+....++..++..+++.+. ..+..+|||+|||+|.++..+...+ .+|+++|+|+.|++
T Consensus 3 ~~~k~~i~~~F~~aa~~Y~~~~~~q~~~a~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~~D~s~~~l~ 78 (251)
T PRK10258 3 TVNKQAIAAAFGRAAAHYEQHAELQRQSADALLAMLP--QRKFTHVLDAGCGPGWMSRYWRERG--SQVTALDLSPPMLA 78 (251)
T ss_pred ccCHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHcC--CeEEEEECCHHHHH
Confidence 3578889999999999999998899999999988886 3456789999999999999998866 89999999999999
Q ss_pred HHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 130 LCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 130 ~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
.++++... ..++++|++.+|+++++||+|+++.++||++|+..++.++.++|+||
T Consensus 79 ~a~~~~~~-------~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~g 133 (251)
T PRK10258 79 QARQKDAA-------DHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPG 133 (251)
T ss_pred HHHhhCCC-------CCEEEcCcccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCC
Confidence 99876431 46788999999988899999999999999999999999999999996
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.87 E-value=4.3e-21 Score=151.95 Aligned_cols=138 Identities=18% Similarity=0.146 Sum_probs=107.4
Q ss_pred HHHHHHHHHHhhhhcCCCchHH----HHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhH
Q 029554 53 RHLKRKQRDRAAWLTRPNDSFV----DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDM 127 (191)
Q Consensus 53 ~~~~~~~~~~~a~~y~~~~~~~----~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~ 127 (191)
.+.+...|++.+..||...... .....++...... ..++.+|||+|||+|.++..+.+. ++..+|+|+|+|++|
T Consensus 32 ~~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~-~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~m 110 (261)
T PLN02233 32 ANERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSG-AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQ 110 (261)
T ss_pred HHHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHH
Confidence 5568889999999999743221 2222222222222 346779999999999999988875 345799999999999
Q ss_pred HHHHHHhhhhc-cCCCCceeeEecCCCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 128 LKLCKDAQQDA-HNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 128 l~~a~~~~~~~-~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
++.|+++.... .....++.++++|++.+|+++++||+|++++++||++|+..+++++.|+||||
T Consensus 111 l~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpG 175 (261)
T PLN02233 111 LAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPG 175 (261)
T ss_pred HHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcC
Confidence 99998765310 11234689999999999999999999999999999999999999999999997
No 6
>PRK05785 hypothetical protein; Provisional
Probab=99.85 E-value=1.2e-20 Score=146.37 Aligned_cols=127 Identities=15% Similarity=0.140 Sum_probs=99.1
Q ss_pred HHHHHHHHHHhhhhcCCCchH-----HHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhH
Q 029554 53 RHLKRKQRDRAAWLTRPNDSF-----VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDM 127 (191)
Q Consensus 53 ~~~~~~~~~~~a~~y~~~~~~-----~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~ 127 (191)
...+...|++.+..||....+ .......++..+.....++.+|||+|||||.++..+.+.+ ..+|+|+|+|++|
T Consensus 8 ~~~v~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~M 86 (226)
T PRK05785 8 WEELQEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENM 86 (226)
T ss_pred HHHHHHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHH
Confidence 455667788888888764211 1122333444443212346799999999999999998874 3699999999999
Q ss_pred HHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCC
Q 029554 128 LKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLP 190 (191)
Q Consensus 128 l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkp 190 (191)
++.++++. .++++|++.+|+++++||+|++++++||++|+..+++++.|+|||
T Consensus 87 l~~a~~~~----------~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp 139 (226)
T PRK05785 87 LKMNLVAD----------DKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRK 139 (226)
T ss_pred HHHHHhcc----------ceEEechhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcC
Confidence 99987642 346789999999999999999999999999999999999999997
No 7
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.83 E-value=2e-19 Score=139.84 Aligned_cols=135 Identities=16% Similarity=0.121 Sum_probs=108.3
Q ss_pred HHHHHHHHHHhhhhcCCCchH-----HHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChh
Q 029554 53 RHLKRKQRDRAAWLTRPNDSF-----VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYD 126 (191)
Q Consensus 53 ~~~~~~~~~~~a~~y~~~~~~-----~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~ 126 (191)
+..+...|++.+..||..... .......++..+. ..++.+|||+|||+|.++..+++.. +..+|+++|+|+.
T Consensus 4 ~~~~~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~ 81 (231)
T TIGR02752 4 EERVHKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSEN 81 (231)
T ss_pred HHHHHHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHH
Confidence 456778888999888874331 2222344554443 3467799999999999999998763 5579999999999
Q ss_pred HHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 127 MLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 127 ~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
+++.++++... ....++.++.+|.+.+++++++||+|+++++++|++++..++.++.++|+||
T Consensus 82 ~~~~a~~~~~~--~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~g 144 (231)
T TIGR02752 82 MLSVGRQKVKD--AGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPG 144 (231)
T ss_pred HHHHHHHHHHh--cCCCceEEEEechhcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcC
Confidence 99999988754 2335688999999888888889999999999999999999999999999997
No 8
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.81 E-value=8.6e-20 Score=144.09 Aligned_cols=104 Identities=18% Similarity=0.199 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC
Q 029554 76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL 155 (191)
Q Consensus 76 ~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l 155 (191)
.....+++.+. ..++.+|||+|||+|.++..+...+|..+|+|+|+|+.|++.++++ ++.++++|++.+
T Consensus 16 ~~~~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~ 84 (255)
T PRK14103 16 RPFYDLLARVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER---------GVDARTGDVRDW 84 (255)
T ss_pred CHHHHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc---------CCcEEEcChhhC
Confidence 33445666655 3467899999999999999999887778999999999999998653 267888998877
Q ss_pred CCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 156 PLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 156 ~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
+ ++++||+|+|+.++||++|+..+++++.++||||
T Consensus 85 ~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg 119 (255)
T PRK14103 85 K-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPG 119 (255)
T ss_pred C-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCC
Confidence 5 5679999999999999999999999999999997
No 9
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.81 E-value=1.1e-19 Score=121.49 Aligned_cols=90 Identities=27% Similarity=0.337 Sum_probs=78.4
Q ss_pred EEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcccCcC
Q 029554 96 LCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTN 175 (191)
Q Consensus 96 LDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~ 175 (191)
||+|||+|..+..+.+. +..+|+++|+|+.+++.++++... ..+.+...|.+.+|+++++||+|+++.++||++
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~-----~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN-----EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLE 74 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT-----STEEEEESBTTSSSS-TT-EEEEEEESHGGGSS
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc-----cCchheeehHHhCccccccccccccccceeecc
Confidence 89999999999999998 459999999999999999987642 335589999999999999999999999999999
Q ss_pred ChHHHHHHHHhccCCC
Q 029554 176 DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 176 d~~~~l~~i~r~Lkpg 191 (191)
++..+++++.|+||||
T Consensus 75 ~~~~~l~e~~rvLk~g 90 (95)
T PF08241_consen 75 DPEAALREIYRVLKPG 90 (95)
T ss_dssp HHHHHHHHHHHHEEEE
T ss_pred CHHHHHHHHHHHcCcC
Confidence 9999999999999986
No 10
>PLN02244 tocopherol O-methyltransferase
Probab=99.80 E-value=3.1e-18 Score=140.42 Aligned_cols=100 Identities=14% Similarity=0.063 Sum_probs=88.3
Q ss_pred cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL 169 (191)
Q Consensus 90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~ 169 (191)
.++.+|||||||+|.++..|++.+ ..+|+|+|+|+.|++.++++... .....++.++++|...+|+++++||+|++..
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~-~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~ 194 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAA-QGLSDKVSFQVADALNQPFEDGQFDLVWSME 194 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHh-cCCCCceEEEEcCcccCCCCCCCccEEEECC
Confidence 456799999999999999998864 37999999999999999887654 1223468999999999999999999999999
Q ss_pred cccCcCChHHHHHHHHhccCCC
Q 029554 170 GLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 170 ~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
+++|+.|...+++++.++||||
T Consensus 195 ~~~h~~d~~~~l~e~~rvLkpG 216 (340)
T PLN02244 195 SGEHMPDKRKFVQELARVAAPG 216 (340)
T ss_pred chhccCCHHHHHHHHHHHcCCC
Confidence 9999999999999999999997
No 11
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.80 E-value=6.9e-19 Score=136.83 Aligned_cols=126 Identities=29% Similarity=0.371 Sum_probs=106.8
Q ss_pred HHHhhhhcCCCchHHHHHHHHHHHHHHhcc-cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhc
Q 029554 60 RDRAAWLTRPNDSFVDAVAENLLDRLEDCR-KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA 138 (191)
Q Consensus 60 ~~~~a~~y~~~~~~~~~~~~~l~~~l~~~~-~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~ 138 (191)
|++++..|+.....+..++..+++.+.... ..+.+|||+|||+|.++..+.+.++..+++++|+|+.+++.++++..
T Consensus 2 ~~~~~~~y~~~~~~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-- 79 (240)
T TIGR02072 2 FNKAAKTYDRHAKIQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-- 79 (240)
T ss_pred cchhhhchhHHHHHHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--
Confidence 345666677666778888888888877532 34468999999999999999988877889999999999999887652
Q ss_pred cCCCCceeeEecCCCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 139 HNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 139 ~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
.++.++.+|++..++++++||+|+++.++||+.|+..++.++.++|+||
T Consensus 80 ----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~ 128 (240)
T TIGR02072 80 ----ENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPG 128 (240)
T ss_pred ----CCCeEEecchhhCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCC
Confidence 2578899999988888899999999999999999999999999999996
No 12
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.79 E-value=4.7e-19 Score=139.98 Aligned_cols=110 Identities=22% Similarity=0.221 Sum_probs=92.0
Q ss_pred hHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecC
Q 029554 72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGD 151 (191)
Q Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d 151 (191)
..+......++..+. ..++.+|||+|||+|.++..++...+..+|+++|+|+.|++.++++.. ++.+..+|
T Consensus 14 ~~~~~~~~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~-------~~~~~~~d 84 (258)
T PRK01683 14 DERTRPARDLLARVP--LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP-------DCQFVEAD 84 (258)
T ss_pred HHhhcHHHHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC-------CCeEEECc
Confidence 344445666776665 346789999999999999999988777899999999999999987653 37788899
Q ss_pred CCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 152 EEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 152 ~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
+..+. ++++||+|+++.++||++|...+++++.++||||
T Consensus 85 ~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg 123 (258)
T PRK01683 85 IASWQ-PPQALDLIFANASLQWLPDHLELFPRLVSLLAPG 123 (258)
T ss_pred hhccC-CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCC
Confidence 87665 4468999999999999999999999999999997
No 13
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.79 E-value=4.3e-18 Score=130.61 Aligned_cols=137 Identities=16% Similarity=0.154 Sum_probs=107.4
Q ss_pred HHHHHHHHHHhhhhcCCCch-----HHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCC------ceEEEE
Q 029554 53 RHLKRKQRDRAAWLTRPNDS-----FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGI------EKLIMM 121 (191)
Q Consensus 53 ~~~~~~~~~~~a~~y~~~~~-----~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~------~~v~~v 121 (191)
...+..-|.+.+..||...- .++.+-+..+..+. +..+.++||++||||.++..+.+..+. .+|+++
T Consensus 59 e~~V~~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~--p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~ 136 (296)
T KOG1540|consen 59 ERLVHHVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLG--PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVL 136 (296)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhhccC--CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEE
Confidence 34556677888877776322 12223334444444 446679999999999999988765433 789999
Q ss_pred ECChhHHHHHHHhhhhccC-CCCceeeEecCCCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 122 DTSYDMLKLCKDAQQDAHN-DNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 122 D~s~~~l~~a~~~~~~~~~-~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
|+|+.|++.++++..+..- ....+.++++|.|.+||++.+||..++.+++..+.|++..++|+.||||||
T Consensus 137 Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpG 207 (296)
T KOG1540|consen 137 DINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPG 207 (296)
T ss_pred eCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCC
Confidence 9999999999998854211 123489999999999999999999999999999999999999999999997
No 14
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.78 E-value=4.3e-18 Score=138.01 Aligned_cols=98 Identities=11% Similarity=0.055 Sum_probs=85.8
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG 170 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~ 170 (191)
++.+|||||||+|.++..|+..+ .+|+|+|+|+.|++.++++... .....++.++++|++.+++++++||+|++..+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g--~~V~GID~s~~~i~~Ar~~~~~-~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMG--ATVTGVDAVDKNVKIARLHADM-DPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV 207 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHh-cCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence 45689999999999999998866 8999999999999999877542 11224688999999988888889999999999
Q ss_pred ccCcCChHHHHHHHHhccCCC
Q 029554 171 LHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 171 l~~~~d~~~~l~~i~r~Lkpg 191 (191)
++|+.|+..+++++.++||||
T Consensus 208 LeHv~d~~~~L~~l~r~LkPG 228 (322)
T PLN02396 208 IEHVANPAEFCKSLSALTIPN 228 (322)
T ss_pred HHhcCCHHHHHHHHHHHcCCC
Confidence 999999999999999999997
No 15
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.78 E-value=1.8e-19 Score=135.13 Aligned_cols=105 Identities=23% Similarity=0.224 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC
Q 029554 77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP 156 (191)
Q Consensus 77 ~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~ 156 (191)
-+..|+.+++ ..+..+|.|+|||+|..+..|.+++|...++|+|.|+.|++.|+++.. +++|..+|+..+.
T Consensus 18 Pa~dLla~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp-------~~~f~~aDl~~w~ 88 (257)
T COG4106 18 PARDLLARVP--LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP-------DATFEEADLRTWK 88 (257)
T ss_pred cHHHHHhhCC--ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC-------CCceecccHhhcC
Confidence 3456777776 446778999999999999999999999999999999999999977654 3899999998886
Q ss_pred CCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 157 LKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 157 ~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
++.++|++++|.+|||++|-...|.++...|.||
T Consensus 89 -p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pg 122 (257)
T COG4106 89 -PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPG 122 (257)
T ss_pred -CCCccchhhhhhhhhhccccHHHHHHHHHhhCCC
Confidence 4578999999999999999999999999999997
No 16
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.77 E-value=6e-18 Score=133.59 Aligned_cols=100 Identities=20% Similarity=0.219 Sum_probs=85.9
Q ss_pred ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-CCCCCcceEEe
Q 029554 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-LKESSLDLAIS 167 (191)
Q Consensus 89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-~~~~~fDlVis 167 (191)
...+.+|||+|||+|..+..+++.+ .+|+++|+|+.|++.|+++.... ....++.++++|+..++ +.+++||+|++
T Consensus 42 ~~~~~~vLDiGcG~G~~a~~la~~g--~~v~~vD~s~~~l~~a~~~~~~~-g~~~~v~~~~~d~~~l~~~~~~~fD~V~~ 118 (255)
T PRK11036 42 PPRPLRVLDAGGGEGQTAIKLAELG--HQVILCDLSAEMIQRAKQAAEAK-GVSDNMQFIHCAAQDIAQHLETPVDLILF 118 (255)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhc-CCccceEEEEcCHHHHhhhcCCCCCEEEe
Confidence 3456799999999999999999887 89999999999999999887541 12346888999977653 56689999999
Q ss_pred CCcccCcCChHHHHHHHHhccCCC
Q 029554 168 CLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 168 ~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
+.+++|+.|+..++.++.++||||
T Consensus 119 ~~vl~~~~~~~~~l~~~~~~Lkpg 142 (255)
T PRK11036 119 HAVLEWVADPKSVLQTLWSVLRPG 142 (255)
T ss_pred hhHHHhhCCHHHHHHHHHHHcCCC
Confidence 999999999999999999999997
No 17
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.76 E-value=4.6e-18 Score=124.16 Aligned_cols=98 Identities=26% Similarity=0.240 Sum_probs=85.6
Q ss_pred CCCeEEEEcCCccHHHHHHh-hcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--CCCCCcceEEe
Q 029554 91 TFPTALCLGGSLEAVRRLLR-GRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LKESSLDLAIS 167 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~-~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~fDlVis 167 (191)
...+|||+|||+|.++..++ ..++..+++|+|+|+.|++.+++.+.. ....++.+.++|+..++ ++ +.||+|++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~--~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~ 79 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKE--LGLDNIEFIQGDIEDLPQELE-EKFDIIIS 79 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHH--TTSTTEEEEESBTTCGCGCSS-TTEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccc--ccccccceEEeehhccccccC-CCeeEEEE
Confidence 45689999999999999999 556778999999999999999998765 33447999999988877 55 78999999
Q ss_pred CCcccCcCChHHHHHHHHhccCCC
Q 029554 168 CLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 168 ~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
+.+++|+.++..+++++.++|+||
T Consensus 80 ~~~l~~~~~~~~~l~~~~~~lk~~ 103 (152)
T PF13847_consen 80 NGVLHHFPDPEKVLKNIIRLLKPG 103 (152)
T ss_dssp ESTGGGTSHHHHHHHHHHHHEEEE
T ss_pred cCchhhccCHHHHHHHHHHHcCCC
Confidence 999999999999999999999874
No 18
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.75 E-value=2.1e-18 Score=131.88 Aligned_cols=97 Identities=13% Similarity=0.077 Sum_probs=86.4
Q ss_pred cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL 169 (191)
Q Consensus 90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~ 169 (191)
.++.+|||+|||.|.++..+++.| .+|+|+|+|+.+++.|+.+..+ ....+.+.+...+++....++||+|+|..
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e---~gv~i~y~~~~~edl~~~~~~FDvV~cmE 132 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALE---SGVNIDYRQATVEDLASAGGQFDVVTCME 132 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhh---ccccccchhhhHHHHHhcCCCccEEEEhh
Confidence 378899999999999999999998 9999999999999999988764 34446677777777765568999999999
Q ss_pred cccCcCChHHHHHHHHhccCCC
Q 029554 170 GLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 170 ~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
+|+|++|+..+++.+.+.+|||
T Consensus 133 VlEHv~dp~~~~~~c~~lvkP~ 154 (243)
T COG2227 133 VLEHVPDPESFLRACAKLVKPG 154 (243)
T ss_pred HHHccCCHHHHHHHHHHHcCCC
Confidence 9999999999999999999997
No 19
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.74 E-value=4.6e-17 Score=127.99 Aligned_cols=99 Identities=17% Similarity=0.188 Sum_probs=82.6
Q ss_pred cCCCeEEEEcCCccHHHHHHhh--cCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEe
Q 029554 90 KTFPTALCLGGSLEAVRRLLRG--RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAIS 167 (191)
Q Consensus 90 ~~~~~VLDlGcG~G~~~~~l~~--~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis 167 (191)
.++.+|||+|||+|..+..+.. ..|..+++++|+|+.|++.++++.... ....++.++++|+..++++ .+|+|++
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~-~~~~~v~~~~~d~~~~~~~--~~D~vv~ 131 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY-KAPTPVDVIEGDIRDIAIE--NASMVVL 131 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc-CCCCCeEEEeCChhhCCCC--CCCEEeh
Confidence 3667999999999999988876 346689999999999999999988641 1234689999998888754 4999999
Q ss_pred CCcccCcCC--hHHHHHHHHhccCCC
Q 029554 168 CLGLHWTND--LPGAMIQVSIFLLPD 191 (191)
Q Consensus 168 ~~~l~~~~d--~~~~l~~i~r~Lkpg 191 (191)
++++||+++ ...+++++.++||||
T Consensus 132 ~~~l~~l~~~~~~~~l~~i~~~LkpG 157 (247)
T PRK15451 132 NFTLQFLEPSERQALLDKIYQGLNPG 157 (247)
T ss_pred hhHHHhCCHHHHHHHHHHHHHhcCCC
Confidence 999999964 467999999999997
No 20
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.74 E-value=9.5e-19 Score=118.69 Aligned_cols=94 Identities=20% Similarity=0.133 Sum_probs=63.0
Q ss_pred EEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC-C-CCCCCcceEEeCCcccC
Q 029554 96 LCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-P-LKESSLDLAISCLGLHW 173 (191)
Q Consensus 96 LDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l-~-~~~~~fDlVis~~~l~~ 173 (191)
||+|||+|.++..+.+.++..+|+++|+|+.|++.++++.... ..........+.... . ...++||+|+++.++||
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAEL--GNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHC--T---EEEEE--SSS---CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc--CCcceeEEEeecCChhhcccccccceehhhhhHhh
Confidence 7999999999999998877899999999999999888887652 222233333332221 1 12268999999999999
Q ss_pred cCChHHHHHHHHhccCCC
Q 029554 174 TNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 174 ~~d~~~~l~~i~r~Lkpg 191 (191)
++++..+++++.++|+||
T Consensus 79 l~~~~~~l~~~~~~L~pg 96 (99)
T PF08242_consen 79 LEDIEAVLRNIYRLLKPG 96 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS
T ss_pred hhhHHHHHHHHHHHcCCC
Confidence 999999999999999997
No 21
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.73 E-value=3.4e-17 Score=124.59 Aligned_cols=96 Identities=16% Similarity=0.126 Sum_probs=82.4
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG 170 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~ 170 (191)
++.+|||+|||+|.++..|++.+ .+|+++|+|+.|++.+++.... ....++.+.+.|+..++++ ++||+|+++.+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g--~~V~gvD~S~~~i~~a~~~~~~--~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~ 104 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANG--FDVTAWDKNPMSIANLERIKAA--ENLDNLHTAVVDLNNLTFD-GEYDFILSTVV 104 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHH--cCCCcceEEecChhhCCcC-CCcCEEEEecc
Confidence 56799999999999999999876 7999999999999999887754 2334578888898877764 67999999999
Q ss_pred ccCcC--ChHHHHHHHHhccCCC
Q 029554 171 LHWTN--DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 171 l~~~~--d~~~~l~~i~r~Lkpg 191 (191)
+||++ +...++.++.++|+||
T Consensus 105 ~~~~~~~~~~~~l~~i~~~Lkpg 127 (197)
T PRK11207 105 LMFLEAKTIPGLIANMQRCTKPG 127 (197)
T ss_pred hhhCCHHHHHHHHHHHHHHcCCC
Confidence 99885 5788999999999997
No 22
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.73 E-value=2.1e-17 Score=134.61 Aligned_cols=97 Identities=16% Similarity=0.123 Sum_probs=85.8
Q ss_pred cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL 169 (191)
Q Consensus 90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~ 169 (191)
.++.+|||+|||+|.++..+.+..+..+|+++|+|+.|++.++++.. ..++.++.+|++.+++++++||+|+++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-----~~~i~~i~gD~e~lp~~~~sFDvVIs~~ 186 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-----LKECKIIEGDAEDLPFPTDYADRYVSAG 186 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-----ccCCeEEeccHHhCCCCCCceeEEEEcC
Confidence 45679999999999999888776555799999999999999988653 2347889999999998889999999999
Q ss_pred cccCcCChHHHHHHHHhccCCC
Q 029554 170 GLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 170 ~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
+++|++|+..+++++.++||||
T Consensus 187 ~L~~~~d~~~~L~e~~rvLkPG 208 (340)
T PLN02490 187 SIEYWPDPQRGIKEAYRVLKIG 208 (340)
T ss_pred hhhhCCCHHHHHHHHHHhcCCC
Confidence 9999999999999999999997
No 23
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.72 E-value=1.2e-17 Score=113.73 Aligned_cols=94 Identities=29% Similarity=0.390 Sum_probs=77.2
Q ss_pred EEEEcCCccHHHHHHhhcC---CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC-c
Q 029554 95 ALCLGGSLEAVRRLLRGRG---GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL-G 170 (191)
Q Consensus 95 VLDlGcG~G~~~~~l~~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~-~ 170 (191)
|||+|||+|..+..+.+.+ +..+++++|+|+.|++.++++... ...++++++.|+..+++.+++||+|+++. +
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~---~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSE---DGPKVRFVQADARDLPFSDGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHH---TTTTSEEEESCTTCHHHHSSSEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchh---cCCceEEEECCHhHCcccCCCeeEEEEcCCc
Confidence 7999999999999998764 448999999999999999998864 33378999999999988888999999954 4
Q ss_pred ccCcC--ChHHHHHHHHhccCCC
Q 029554 171 LHWTN--DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 171 l~~~~--d~~~~l~~i~r~Lkpg 191 (191)
++|+. +...+++++.++|+||
T Consensus 78 ~~~~~~~~~~~ll~~~~~~l~pg 100 (101)
T PF13649_consen 78 LHHLSPEELEALLRRIARLLRPG 100 (101)
T ss_dssp GGGSSHHHHHHHHHHHHHTEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHhCCC
Confidence 99986 4568999999999986
No 24
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.71 E-value=9.3e-17 Score=127.34 Aligned_cols=107 Identities=16% Similarity=0.161 Sum_probs=89.6
Q ss_pred HHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC
Q 029554 78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL 157 (191)
Q Consensus 78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~ 157 (191)
...++..+. ..++.+|||||||+|..+..++... ..+|+++|+|+.|++.++++... ..++.+.+.|+...++
T Consensus 41 ~~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~----~~~i~~~~~D~~~~~~ 113 (263)
T PTZ00098 41 TTKILSDIE--LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD----KNKIEFEANDILKKDF 113 (263)
T ss_pred HHHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc----CCceEEEECCcccCCC
Confidence 345555543 4577899999999999998887654 36899999999999999887632 3468899999988888
Q ss_pred CCCCcceEEeCCcccCcC--ChHHHHHHHHhccCCC
Q 029554 158 KESSLDLAISCLGLHWTN--DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 158 ~~~~fDlVis~~~l~~~~--d~~~~l~~i~r~Lkpg 191 (191)
++++||+|++..+++|++ ++..+++++.++||||
T Consensus 114 ~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPG 149 (263)
T PTZ00098 114 PENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPN 149 (263)
T ss_pred CCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCC
Confidence 889999999999988875 8899999999999997
No 25
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.71 E-value=2.7e-17 Score=113.69 Aligned_cols=99 Identities=19% Similarity=0.193 Sum_probs=81.1
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCC-CCCCCCCCCcceEEeCC
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE-EFLPLKESSLDLAISCL 169 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~-~~l~~~~~~fDlVis~~ 169 (191)
|+.+|||+|||+|.++..+++..+..+++++|+|+.|++.++++... .....++.+++.|+ ..... .+.||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~ 78 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAE-EGLSDRITFVQGDAEFDPDF-LEPFDLVICSG 78 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHH-TTTTTTEEEEESCCHGGTTT-SSCEEEEEECS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh-cCCCCCeEEEECccccCccc-CCCCCEEEECC
Confidence 46789999999999999999855569999999999999999998843 24567899999999 33333 35699999999
Q ss_pred -cccCc---CChHHHHHHHHhccCCC
Q 029554 170 -GLHWT---NDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 170 -~l~~~---~d~~~~l~~i~r~Lkpg 191 (191)
++++. ++...+++++.+.|+||
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~L~pg 104 (112)
T PF12847_consen 79 FTLHFLLPLDERRRVLERIRRLLKPG 104 (112)
T ss_dssp GSGGGCCHHHHHHHHHHHHHHHEEEE
T ss_pred CccccccchhHHHHHHHHHHHhcCCC
Confidence 55543 35678899999999986
No 26
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.71 E-value=1.4e-16 Score=118.77 Aligned_cols=100 Identities=22% Similarity=0.269 Sum_probs=87.4
Q ss_pred ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCcee-eEecCCCCCC-CCCCCcceEE
Q 029554 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETC-FVVGDEEFLP-LKESSLDLAI 166 (191)
Q Consensus 89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~-~~~~d~~~l~-~~~~~fDlVi 166 (191)
+.....|||||||||.+-..+.. -|..+|+++|+++.|-+.+.+++.+ +...++. |++++.+.+| +++++||.||
T Consensus 74 k~~K~~vLEvgcGtG~Nfkfy~~-~p~~svt~lDpn~~mee~~~ks~~E--~k~~~~~~fvva~ge~l~~l~d~s~DtVV 150 (252)
T KOG4300|consen 74 KSGKGDVLEVGCGTGANFKFYPW-KPINSVTCLDPNEKMEEIADKSAAE--KKPLQVERFVVADGENLPQLADGSYDTVV 150 (252)
T ss_pred ccCccceEEecccCCCCcccccC-CCCceEEEeCCcHHHHHHHHHHHhh--ccCcceEEEEeechhcCcccccCCeeeEE
Confidence 33455789999999999887753 3568999999999999999998876 4566666 8899999988 8899999999
Q ss_pred eCCcccCcCChHHHHHHHHhccCCC
Q 029554 167 SCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 167 s~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
+.++|..+.|+...|.++.|+|+||
T Consensus 151 ~TlvLCSve~~~k~L~e~~rlLRpg 175 (252)
T KOG4300|consen 151 CTLVLCSVEDPVKQLNEVRRLLRPG 175 (252)
T ss_pred EEEEEeccCCHHHHHHHHHHhcCCC
Confidence 9999999999999999999999997
No 27
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.69 E-value=2.3e-16 Score=119.90 Aligned_cols=104 Identities=13% Similarity=0.102 Sum_probs=83.0
Q ss_pred HHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCC
Q 029554 80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKE 159 (191)
Q Consensus 80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 159 (191)
.+++.+. ..++.+|||+|||+|.++..+++.+ .+|+++|+|+.|++.++++... ...++.+...|....+++
T Consensus 21 ~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~g--~~V~~iD~s~~~l~~a~~~~~~---~~~~v~~~~~d~~~~~~~- 92 (195)
T TIGR00477 21 AVREAVK--TVAPCKTLDLGCGQGRNSLYLSLAG--YDVRAWDHNPASIASVLDMKAR---ENLPLRTDAYDINAAALN- 92 (195)
T ss_pred HHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHHH---hCCCceeEeccchhcccc-
Confidence 3444444 2346799999999999999999876 7999999999999999887653 222366777787666654
Q ss_pred CCcceEEeCCcccCcC--ChHHHHHHHHhccCCC
Q 029554 160 SSLDLAISCLGLHWTN--DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 160 ~~fDlVis~~~l~~~~--d~~~~l~~i~r~Lkpg 191 (191)
++||+|+++.++||++ +...+++++.++|+||
T Consensus 93 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 126 (195)
T TIGR00477 93 EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPG 126 (195)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCC
Confidence 5799999999999884 5678999999999997
No 28
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.69 E-value=2.8e-16 Score=134.22 Aligned_cols=107 Identities=17% Similarity=0.175 Sum_probs=90.3
Q ss_pred HHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC
Q 029554 79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK 158 (191)
Q Consensus 79 ~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~ 158 (191)
..+++.+. ..++.+|||+|||+|..+..++... ..+|+|+|+|+.+++.|+++... ...++.+.++|+...+++
T Consensus 256 e~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~---~~~~v~~~~~d~~~~~~~ 329 (475)
T PLN02336 256 KEFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIG---RKCSVEFEVADCTKKTYP 329 (475)
T ss_pred HHHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhc---CCCceEEEEcCcccCCCC
Confidence 34555544 3456799999999999998888764 46899999999999999877642 334688999999888888
Q ss_pred CCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 159 ESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 159 ~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
+++||+|+|..+++|+.|+..+++++.++||||
T Consensus 330 ~~~fD~I~s~~~l~h~~d~~~~l~~~~r~Lkpg 362 (475)
T PLN02336 330 DNSFDVIYSRDTILHIQDKPALFRSFFKWLKPG 362 (475)
T ss_pred CCCEEEEEECCcccccCCHHHHHHHHHHHcCCC
Confidence 889999999999999999999999999999997
No 29
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.69 E-value=1e-15 Score=119.04 Aligned_cols=137 Identities=20% Similarity=0.178 Sum_probs=105.5
Q ss_pred CHHHHHHHHHHhhhhcCCCch-H----HHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECCh
Q 029554 52 DRHLKRKQRDRAAWLTRPNDS-F----VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSY 125 (191)
Q Consensus 52 d~~~~~~~~~~~a~~y~~~~~-~----~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~ 125 (191)
+++.....|+..+..|+.... . .......++..+. ..++.+|||+|||+|..+..+...++ ..+++++|+++
T Consensus 9 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~ 86 (239)
T PRK00216 9 KQEKVAEMFDSIAPKYDLMNDLLSFGLHRVWRRKTIKWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSE 86 (239)
T ss_pred chHHHHHHHHHhhhhHHHHHHHHhcCCcHHHHHHHHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCH
Confidence 455567788888877764211 1 2223334444444 23567999999999999999988775 58999999999
Q ss_pred hHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 126 DMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 126 ~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
.+++.++++... .+...++.+...|...++++.++||+|+++.++|++.++...+.++.++|+||
T Consensus 87 ~~~~~a~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~g 151 (239)
T PRK00216 87 GMLAVGREKLRD-LGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPG 151 (239)
T ss_pred HHHHHHHHhhcc-cccccCeEEEecccccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCC
Confidence 999999887643 11234588888998888777789999999999999999999999999999986
No 30
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.69 E-value=3.8e-16 Score=127.06 Aligned_cols=99 Identities=17% Similarity=0.074 Sum_probs=82.7
Q ss_pred cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL 169 (191)
Q Consensus 90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~ 169 (191)
..+.+|||||||+|.++..++..++ ..|+|+|+|+.|+.+++..... .....++.++.+|++.+|+ +++||+|+|..
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~-~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~ 197 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKL-LGNDQRAHLLPLGIEQLPA-LKAFDTVFSMG 197 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHh-cCCCCCeEEEeCCHHHCCC-cCCcCEEEECC
Confidence 3567999999999999999988763 4699999999998765443221 0123468899999999987 78899999999
Q ss_pred cccCcCChHHHHHHHHhccCCC
Q 029554 170 GLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 170 ~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
++||..|+..+++++.++|+||
T Consensus 198 vl~H~~dp~~~L~~l~~~LkpG 219 (322)
T PRK15068 198 VLYHRRSPLDHLKQLKDQLVPG 219 (322)
T ss_pred hhhccCCHHHHHHHHHHhcCCC
Confidence 9999999999999999999997
No 31
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.69 E-value=4.4e-16 Score=119.01 Aligned_cols=91 Identities=16% Similarity=0.123 Sum_probs=77.1
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG 170 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~ 170 (191)
++.+|||+|||+|..+..|....+..+++|+|+|+.|++.|+++.. ++.+.++|+.. |+++++||+|+++.+
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~-------~~~~~~~d~~~-~~~~~sfD~V~~~~v 114 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP-------NINIIQGSLFD-PFKDNFFDLVLTKGV 114 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC-------CCcEEEeeccC-CCCCCCEEEEEECCh
Confidence 5668999999999999999887556899999999999999987642 26677888776 788899999999999
Q ss_pred ccCcC--ChHHHHHHHHhccC
Q 029554 171 LHWTN--DLPGAMIQVSIFLL 189 (191)
Q Consensus 171 l~~~~--d~~~~l~~i~r~Lk 189 (191)
++|++ +...+++++.++++
T Consensus 115 L~hl~p~~~~~~l~el~r~~~ 135 (204)
T TIGR03587 115 LIHINPDNLPTAYRELYRCSN 135 (204)
T ss_pred hhhCCHHHHHHHHHHHHhhcC
Confidence 99985 45778899988875
No 32
>PRK06202 hypothetical protein; Provisional
Probab=99.68 E-value=7e-16 Score=120.16 Aligned_cols=96 Identities=14% Similarity=0.049 Sum_probs=77.1
Q ss_pred cCCCeEEEEcCCccHHHHHHhh----cCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceE
Q 029554 90 KTFPTALCLGGSLEAVRRLLRG----RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLA 165 (191)
Q Consensus 90 ~~~~~VLDlGcG~G~~~~~l~~----~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlV 165 (191)
.++.+|||+|||+|.++..|.. .++..+|+|+|+|+.|++.++++... .++.+.+.+.+.++.++++||+|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-----~~~~~~~~~~~~l~~~~~~fD~V 133 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-----PGVTFRQAVSDELVAEGERFDVV 133 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-----CCCeEEEEecccccccCCCccEE
Confidence 4567999999999999888764 34456999999999999999876532 23566666666666677899999
Q ss_pred EeCCcccCcCCh--HHHHHHHHhccCC
Q 029554 166 ISCLGLHWTNDL--PGAMIQVSIFLLP 190 (191)
Q Consensus 166 is~~~l~~~~d~--~~~l~~i~r~Lkp 190 (191)
++++++||++|. ..+++++.++++.
T Consensus 134 ~~~~~lhh~~d~~~~~~l~~~~r~~~~ 160 (232)
T PRK06202 134 TSNHFLHHLDDAEVVRLLADSAALARR 160 (232)
T ss_pred EECCeeecCChHHHHHHHHHHHHhcCe
Confidence 999999999874 5799999998863
No 33
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.68 E-value=4e-16 Score=124.26 Aligned_cols=100 Identities=25% Similarity=0.254 Sum_probs=86.3
Q ss_pred cCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC
Q 029554 90 KTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC 168 (191)
Q Consensus 90 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~ 168 (191)
.++.+|||+|||+|..+..++.. ++..+|+++|+|+.|++.++++... ....++.+..+|++.+++++++||+|+++
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~--~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARK--AGYTNVEFRLGEIEALPVADNSVDVIISN 153 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHH--cCCCCEEEEEcchhhCCCCCCceeEEEEc
Confidence 46789999999999987766554 4446899999999999999987754 23346889999999998888899999999
Q ss_pred CcccCcCChHHHHHHHHhccCCC
Q 029554 169 LGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 169 ~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
.+++|.++...+++++.++||||
T Consensus 154 ~v~~~~~d~~~~l~~~~r~LkpG 176 (272)
T PRK11873 154 CVINLSPDKERVFKEAFRVLKPG 176 (272)
T ss_pred CcccCCCCHHHHHHHHHHHcCCC
Confidence 99999999999999999999997
No 34
>PRK08317 hypothetical protein; Provisional
Probab=99.68 E-value=7.6e-16 Score=119.56 Aligned_cols=107 Identities=24% Similarity=0.237 Sum_probs=90.7
Q ss_pred HHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC
Q 029554 80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK 158 (191)
Q Consensus 80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~ 158 (191)
.+++.+. ..++.+|||+|||+|.++..++... +..+++++|+|+.+++.++++.. ....++.+...|...++++
T Consensus 10 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~---~~~~~~~~~~~d~~~~~~~ 84 (241)
T PRK08317 10 RTFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA---GLGPNVEFVRGDADGLPFP 84 (241)
T ss_pred HHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh---CCCCceEEEecccccCCCC
Confidence 4444444 3467799999999999999998775 56899999999999999988732 2345688899998888888
Q ss_pred CCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 159 ESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 159 ~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
+++||+|++..+++|+.|+..+++++.++|+||
T Consensus 85 ~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~g 117 (241)
T PRK08317 85 DGSFDAVRSDRVLQHLEDPARALAEIARVLRPG 117 (241)
T ss_pred CCCceEEEEechhhccCCHHHHHHHHHHHhcCC
Confidence 889999999999999999999999999999997
No 35
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.67 E-value=1e-15 Score=119.70 Aligned_cols=99 Identities=19% Similarity=0.183 Sum_probs=82.8
Q ss_pred cCCCeEEEEcCCccHHHHHHhhcC--CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEe
Q 029554 90 KTFPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAIS 167 (191)
Q Consensus 90 ~~~~~VLDlGcG~G~~~~~l~~~~--~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis 167 (191)
.+..+|||+|||+|..+..+.+.. |..+++|+|+|+.|++.|+++.... ....++.++++|+..++++ .+|+|++
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~--~~d~v~~ 128 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY-HSEIPVEILCNDIRHVEIK--NASMVIL 128 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc-CCCCCeEEEECChhhCCCC--CCCEEee
Confidence 366789999999999999888753 5689999999999999999887541 1234688999999888765 4899999
Q ss_pred CCcccCcC--ChHHHHHHHHhccCCC
Q 029554 168 CLGLHWTN--DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 168 ~~~l~~~~--d~~~~l~~i~r~Lkpg 191 (191)
++++||+. +...+++++.++|+||
T Consensus 129 ~~~l~~~~~~~~~~~l~~i~~~Lkpg 154 (239)
T TIGR00740 129 NFTLQFLPPEDRIALLTKIYEGLNPN 154 (239)
T ss_pred ecchhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999986 4578999999999997
No 36
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.67 E-value=9.3e-16 Score=123.94 Aligned_cols=99 Identities=15% Similarity=0.018 Sum_probs=80.1
Q ss_pred cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL 169 (191)
Q Consensus 90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~ 169 (191)
.++.+|||+|||+|.++..+...++ ..|+|+|+|+.|+.+++..... .....++.+...+++.++.. .+||+|+|+.
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~-~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~g 196 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKL-LDNDKRAILEPLGIEQLHEL-YAFDTVFSMG 196 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHH-hccCCCeEEEECCHHHCCCC-CCcCEEEEcc
Confidence 4577999999999999888887763 4799999999999875432211 01234577788888888754 5899999999
Q ss_pred cccCcCChHHHHHHHHhccCCC
Q 029554 170 GLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 170 ~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
+++|..|+..++.+++++||||
T Consensus 197 vL~H~~dp~~~L~el~r~LkpG 218 (314)
T TIGR00452 197 VLYHRKSPLEHLKQLKHQLVIK 218 (314)
T ss_pred hhhccCCHHHHHHHHHHhcCCC
Confidence 9999999999999999999997
No 37
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.67 E-value=7.2e-17 Score=124.47 Aligned_cols=94 Identities=18% Similarity=0.139 Sum_probs=79.5
Q ss_pred CeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCC----ceeeEecCCCCCCCCCCCcceEEeC
Q 029554 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI----ETCFVVGDEEFLPLKESSLDLAISC 168 (191)
Q Consensus 93 ~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~----~~~~~~~d~~~l~~~~~~fDlVis~ 168 (191)
.+|||+|||+|.+++.|++.+ ++|+|+|+++.|++.|+++......... ++.+...+.+.+. +.||.|+|.
T Consensus 91 ~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282)
T ss_pred ceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence 579999999999999999988 9999999999999999988433111112 3566667777664 459999999
Q ss_pred CcccCcCChHHHHHHHHhccCCC
Q 029554 169 LGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 169 ~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
.+++|+.|++.++..+.+.||||
T Consensus 166 evleHV~dp~~~l~~l~~~lkP~ 188 (282)
T KOG1270|consen 166 EVLEHVKDPQEFLNCLSALLKPN 188 (282)
T ss_pred HHHHHHhCHHHHHHHHHHHhCCC
Confidence 99999999999999999999996
No 38
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.67 E-value=1.8e-16 Score=116.04 Aligned_cols=98 Identities=27% Similarity=0.244 Sum_probs=76.7
Q ss_pred HHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCC
Q 029554 80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKE 159 (191)
Q Consensus 80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 159 (191)
+++..+.....+..+|||+|||+|.++..+.+.+ .+++++|+|+.+++. .. ......+....+.++
T Consensus 11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~~g~D~~~~~~~~--~~----------~~~~~~~~~~~~~~~ 76 (161)
T PF13489_consen 11 DLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRG--FEVTGVDISPQMIEK--RN----------VVFDNFDAQDPPFPD 76 (161)
T ss_dssp HHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTT--SEEEEEESSHHHHHH--TT----------SEEEEEECHTHHCHS
T ss_pred HHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHhh--hh----------hhhhhhhhhhhhccc
Confidence 3344444323577899999999999999998877 599999999999987 11 222333333444467
Q ss_pred CCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 160 SSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 160 ~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
++||+|+|+.+|+|++|+..+++++.++||||
T Consensus 77 ~~fD~i~~~~~l~~~~d~~~~l~~l~~~Lkpg 108 (161)
T PF13489_consen 77 GSFDLIICNDVLEHLPDPEEFLKELSRLLKPG 108 (161)
T ss_dssp SSEEEEEEESSGGGSSHHHHHHHHHHHCEEEE
T ss_pred cchhhHhhHHHHhhcccHHHHHHHHHHhcCCC
Confidence 89999999999999999999999999999986
No 39
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.67 E-value=2e-15 Score=116.20 Aligned_cols=128 Identities=19% Similarity=0.162 Sum_probs=98.9
Q ss_pred HHHHHhhhhcCCCchH-----HHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCC-ceEEEEECChhHHHHH
Q 029554 58 KQRDRAAWLTRPNDSF-----VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGI-EKLIMMDTSYDMLKLC 131 (191)
Q Consensus 58 ~~~~~~a~~y~~~~~~-----~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~-~~v~~vD~s~~~l~~a 131 (191)
.+|+..+.+|+..+.. .......++..+. ..++.+|||+|||+|..+..+...++. .+++++|+++.+++.+
T Consensus 3 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~ 80 (223)
T TIGR01934 3 EMFDRIAPKYDLLNDLLSFGLHRLWRRRAVKLIG--VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVA 80 (223)
T ss_pred hHHHHHHhhhhHHHHHHhcccHHHHHHHHHHHhc--cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHH
Confidence 3456666666664322 1222333444433 236779999999999999999887754 6899999999999999
Q ss_pred HHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 132 KDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
+++.. ...++.+..+|+...++++++||+|+++++++|..++..+++++.++|+||
T Consensus 81 ~~~~~----~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~g 136 (223)
T TIGR01934 81 KKKSE----LPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPG 136 (223)
T ss_pred HHHhc----cCCCceEEecchhcCCCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCC
Confidence 88763 233578889998888877789999999999999999999999999999997
No 40
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.64 E-value=5.3e-15 Score=111.46 Aligned_cols=94 Identities=15% Similarity=0.064 Sum_probs=80.3
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG 170 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~ 170 (191)
++.+|||+|||+|..+..++...+..+|+++|+|+.|++.++++... ....++.+..+|.+.++. +++||+|+++.
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~--~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~- 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAE--LGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA- 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHH--cCCCCEEEEeccHhhCCC-CCCccEEEEcc-
Confidence 47899999999999999888766778999999999999999988765 233458999999888776 67899999975
Q ss_pred ccCcCChHHHHHHHHhccCCC
Q 029554 171 LHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 171 l~~~~d~~~~l~~i~r~Lkpg 191 (191)
+.++..++.++.++||||
T Consensus 121 ---~~~~~~~l~~~~~~LkpG 138 (187)
T PRK00107 121 ---VASLSDLVELCLPLLKPG 138 (187)
T ss_pred ---ccCHHHHHHHHHHhcCCC
Confidence 357889999999999997
No 41
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.64 E-value=1.5e-15 Score=117.58 Aligned_cols=96 Identities=15% Similarity=0.042 Sum_probs=83.2
Q ss_pred eEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcccC
Q 029554 94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHW 173 (191)
Q Consensus 94 ~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~ 173 (191)
+|||+|||+|..+..+++.++..+++++|+|+.+++.++++.... +...++.+...|....+++ ++||+|++..+++|
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~-gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRAL-GLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc-CCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 699999999999999988776689999999999999999887541 2334688899998766654 58999999999999
Q ss_pred cCChHHHHHHHHhccCCC
Q 029554 174 TNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 174 ~~d~~~~l~~i~r~Lkpg 191 (191)
+++...+++++.++||||
T Consensus 80 ~~~~~~~l~~~~~~Lkpg 97 (224)
T smart00828 80 IKDKMDLFSNISRHLKDG 97 (224)
T ss_pred CCCHHHHHHHHHHHcCCC
Confidence 999999999999999997
No 42
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.64 E-value=2.7e-15 Score=112.03 Aligned_cols=96 Identities=22% Similarity=0.269 Sum_probs=75.8
Q ss_pred ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC
Q 029554 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC 168 (191)
Q Consensus 89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~ 168 (191)
.....++||+|||.|.++..|+.++ .+++++|+|+..++.|+++.. ...++.+.+.|+.... +++.||+|+++
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~----~~~~V~~~~~dvp~~~-P~~~FDLIV~S 113 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLA----GLPHVEWIQADVPEFW-PEGRFDLIVLS 113 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTT----T-SSEEEEES-TTT----SS-EEEEEEE
T ss_pred ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcC----CCCCeEEEECcCCCCC-CCCCeeEEEEe
Confidence 4456789999999999999999988 899999999999999999985 3457999999987654 67899999999
Q ss_pred CcccCcCC---hHHHHHHHHhccCCC
Q 029554 169 LGLHWTND---LPGAMIQVSIFLLPD 191 (191)
Q Consensus 169 ~~l~~~~d---~~~~l~~i~r~Lkpg 191 (191)
.+++|+.+ +..++.++...|+||
T Consensus 114 EVlYYL~~~~~L~~~l~~l~~~L~pg 139 (201)
T PF05401_consen 114 EVLYYLDDAEDLRAALDRLVAALAPG 139 (201)
T ss_dssp S-GGGSSSHHHHHHHHHHHHHTEEEE
T ss_pred hHhHcCCCHHHHHHHHHHHHHHhCCC
Confidence 99999975 456889999999886
No 43
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.64 E-value=2.8e-15 Score=120.38 Aligned_cols=95 Identities=17% Similarity=0.161 Sum_probs=81.1
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG 170 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~ 170 (191)
++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.++++... ...++.+...|+...++ +++||+|+++.+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g--~~V~avD~s~~ai~~~~~~~~~---~~l~v~~~~~D~~~~~~-~~~fD~I~~~~v 193 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLG--FDVTAVDINQQSLENLQEIAEK---ENLNIRTGLYDINSASI-QEEYDFILSTVV 193 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHH---cCCceEEEEechhcccc-cCCccEEEEcch
Confidence 34589999999999999999876 7999999999999999887754 22367888888876655 578999999999
Q ss_pred ccCcC--ChHHHHHHHHhccCCC
Q 029554 171 LHWTN--DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 171 l~~~~--d~~~~l~~i~r~Lkpg 191 (191)
+||++ +...+++++.++|+||
T Consensus 194 l~~l~~~~~~~~l~~~~~~Lkpg 216 (287)
T PRK12335 194 LMFLNRERIPAIIKNMQEHTNPG 216 (287)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCC
Confidence 99985 5678999999999997
No 44
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.62 E-value=1.9e-15 Score=113.83 Aligned_cols=122 Identities=20% Similarity=0.159 Sum_probs=91.7
Q ss_pred HHhhhhcCCC---chHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhh
Q 029554 61 DRAAWLTRPN---DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD 137 (191)
Q Consensus 61 ~~~a~~y~~~---~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~ 137 (191)
+..|..|... ...+.++..+-++.+..-.....-|||||||+|..+..|.+.+ ..++|+|+|+.|++.|.++.-+
T Consensus 17 d~eA~kYt~nsri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~G--h~wiGvDiSpsML~~a~~~e~e 94 (270)
T KOG1541|consen 17 DTEAPKYTQNSRIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSG--HQWIGVDISPSMLEQAVERELE 94 (270)
T ss_pred hhhhhhccccceeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCC--ceEEeecCCHHHHHHHHHhhhh
Confidence 3445555553 3456777778887777422235679999999999999999877 8999999999999999873211
Q ss_pred ccCCCCceeeEecCC-CCCCCCCCCcceEEeCCcccCc-------CChH----HHHHHHHhccCCC
Q 029554 138 AHNDNIETCFVVGDE-EFLPLKESSLDLAISCLGLHWT-------NDLP----GAMIQVSIFLLPD 191 (191)
Q Consensus 138 ~~~~~~~~~~~~~d~-~~l~~~~~~fDlVis~~~l~~~-------~d~~----~~l~~i~r~Lkpg 191 (191)
-.++.+|+ +.+||.++.||.|||..+++|. +++. .++..+..+|++|
T Consensus 95 -------gdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg 153 (270)
T KOG1541|consen 95 -------GDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRG 153 (270)
T ss_pred -------cCeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccC
Confidence 45677775 5789999999999999999986 2232 4677777777764
No 45
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.61 E-value=3.1e-15 Score=114.28 Aligned_cols=99 Identities=15% Similarity=0.108 Sum_probs=83.2
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCC-CCCC--CCCCCcceEEe
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE-EFLP--LKESSLDLAIS 167 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~-~~l~--~~~~~fDlVis 167 (191)
+..+|||+|||+|..+..+++..|..+|+++|+|+.|++.++++... ....++.++++|+ +.++ +++++||+|++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~--~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEE--EGLTNLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHH--cCCCCEEEEecCHHHHHHHHcCccccceEEE
Confidence 56789999999999999998877778999999999999999988764 2335689999998 7665 67789999999
Q ss_pred CCcccCcC--------ChHHHHHHHHhccCCC
Q 029554 168 CLGLHWTN--------DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 168 ~~~l~~~~--------d~~~~l~~i~r~Lkpg 191 (191)
++...|.. ....+++++.++||||
T Consensus 118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkpg 149 (202)
T PRK00121 118 NFPDPWPKKRHHKRRLVQPEFLALYARKLKPG 149 (202)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHcCCC
Confidence 88776643 2477899999999996
No 46
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.61 E-value=1.3e-14 Score=115.71 Aligned_cols=123 Identities=20% Similarity=0.167 Sum_probs=86.1
Q ss_pred ccCHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCC---ceEEEEECChh
Q 029554 50 IFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGI---EKLIMMDTSYD 126 (191)
Q Consensus 50 ~~d~~~~~~~~~~~a~~y~~~~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~---~~v~~vD~s~~ 126 (191)
-+++.++......... .....+.+.+...+.+.+ .....+|||+|||+|..+..+.+..+. .+++|+|+|+.
T Consensus 49 ~d~~~~~~ar~~fl~~--g~y~~l~~~i~~~l~~~l---~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~ 123 (272)
T PRK11088 49 GDNKEMMQARRAFLDA--GHYQPLRDAVANLLAERL---DEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKV 123 (272)
T ss_pred CcCHHHHHHHHHHHHC--CChHHHHHHHHHHHHHhc---CCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHH
Confidence 4555555544333221 112234444443333322 234568999999999999988775432 47999999999
Q ss_pred HHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 127 MLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 127 ~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
|++.|+++.. ++.+.++|...+|+++++||+|++.++. ..+.++.|+||||
T Consensus 124 ~l~~A~~~~~-------~~~~~~~d~~~lp~~~~sfD~I~~~~~~-------~~~~e~~rvLkpg 174 (272)
T PRK11088 124 AIKYAAKRYP-------QVTFCVASSHRLPFADQSLDAIIRIYAP-------CKAEELARVVKPG 174 (272)
T ss_pred HHHHHHHhCC-------CCeEEEeecccCCCcCCceeEEEEecCC-------CCHHHHHhhccCC
Confidence 9999976542 3788999999999999999999987652 3468899999996
No 47
>PRK06922 hypothetical protein; Provisional
Probab=99.61 E-value=3.1e-15 Score=129.35 Aligned_cols=98 Identities=15% Similarity=0.150 Sum_probs=84.0
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--CCCCCcceEEeC
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LKESSLDLAISC 168 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~fDlVis~ 168 (191)
++.+|||+|||+|..+..++..+|..+++|+|+|+.|++.++++... ...++.++++|...++ +++++||+|+++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~---~g~~ie~I~gDa~dLp~~fedeSFDvVVsn 494 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQN---EGRSWNVIKGDAINLSSSFEKESVDTIVYS 494 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh---cCCCeEEEEcchHhCccccCCCCEEEEEEc
Confidence 57899999999999999998877889999999999999999887643 2345778889987777 778999999999
Q ss_pred CcccCc-------------CChHHHHHHHHhccCCC
Q 029554 169 LGLHWT-------------NDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 169 ~~l~~~-------------~d~~~~l~~i~r~Lkpg 191 (191)
.++||+ .++..+++++.++||||
T Consensus 495 ~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPG 530 (677)
T PRK06922 495 SILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPG 530 (677)
T ss_pred hHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCC
Confidence 999875 25678999999999997
No 48
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.59 E-value=7.2e-15 Score=111.49 Aligned_cols=90 Identities=18% Similarity=0.110 Sum_probs=75.4
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-C-CCCCCCcceEEeC
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-L-PLKESSLDLAISC 168 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l-~~~~~~fDlVis~ 168 (191)
++.+|||+|||+|.++..+.+.. ...++++|+|+.+++.++++ ++.++++|++. + ++++++||+|+++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~---------~~~~~~~d~~~~l~~~~~~sfD~Vi~~ 82 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR---------GVNVIQGDLDEGLEAFPDKSFDYVILS 82 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc---------CCeEEEEEhhhcccccCCCCcCEEEEh
Confidence 56789999999999999887653 36789999999999888542 15677788764 4 3677899999999
Q ss_pred CcccCcCChHHHHHHHHhccCC
Q 029554 169 LGLHWTNDLPGAMIQVSIFLLP 190 (191)
Q Consensus 169 ~~l~~~~d~~~~l~~i~r~Lkp 190 (191)
.++||++|+..+++++.+++++
T Consensus 83 ~~l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 83 QTLQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred hHhHcCcCHHHHHHHHHHhCCe
Confidence 9999999999999999998875
No 49
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.59 E-value=8.9e-15 Score=116.02 Aligned_cols=101 Identities=13% Similarity=0.004 Sum_probs=78.0
Q ss_pred CCCeEEEEcCCccHH----HHHHhhcCC-----CceEEEEECChhHHHHHHHhhhh-c--cC------------------
Q 029554 91 TFPTALCLGGSLEAV----RRLLRGRGG-----IEKLIMMDTSYDMLKLCKDAQQD-A--HN------------------ 140 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~----~~~l~~~~~-----~~~v~~vD~s~~~l~~a~~~~~~-~--~~------------------ 140 (191)
.+.+|||+|||+|.. +..+.+.++ ..+|+|+|+|+.|++.|++..-. + .+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 346899999999973 444544332 36899999999999999875310 0 00
Q ss_pred ----CCCceeeEecCCCCCCCCCCCcceEEeCCcccCcCC--hHHHHHHHHhccCCC
Q 029554 141 ----DNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTND--LPGAMIQVSIFLLPD 191 (191)
Q Consensus 141 ----~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d--~~~~l~~i~r~Lkpg 191 (191)
...++.|.+.|+...+++.++||+|+|.++++|+++ ...++.++.++|+||
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pG 235 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPG 235 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCC
Confidence 013588999999888777889999999999999964 457999999999997
No 50
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.58 E-value=3.3e-14 Score=106.75 Aligned_cols=94 Identities=14% Similarity=0.057 Sum_probs=77.4
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG 170 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~ 170 (191)
.+.+|||+|||+|.++..++..++..+|+++|+|+.|++.++++... ....++.++++|++.++ ..++||+|+++.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~--~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~- 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAE--LGLNNVEIVNGRAEDFQ-HEEQFDVITSRA- 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHH--hCCCCeEEEecchhhcc-ccCCccEEEehh-
Confidence 46799999999999999888777678899999999999999887754 23346899999988764 357899999976
Q ss_pred ccCcCChHHHHHHHHhccCCC
Q 029554 171 LHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 171 l~~~~d~~~~l~~i~r~Lkpg 191 (191)
++ +....+..+.++|+||
T Consensus 118 ~~---~~~~~~~~~~~~Lkpg 135 (181)
T TIGR00138 118 LA---SLNVLLELTLNLLKVG 135 (181)
T ss_pred hh---CHHHHHHHHHHhcCCC
Confidence 43 5677888899999996
No 51
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.58 E-value=3.8e-14 Score=99.27 Aligned_cols=109 Identities=13% Similarity=0.016 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-
Q 029554 76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF- 154 (191)
Q Consensus 76 ~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~- 154 (191)
++...++..+. ..++.+|||+|||+|..+..+++..+..+|+++|+|+.+++.++++... ....++.++..|...
T Consensus 6 ~~~~~~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~ 81 (124)
T TIGR02469 6 EVRALTLSKLR--LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARR--FGVSNIVIVEGDAPEA 81 (124)
T ss_pred HHHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHH--hCCCceEEEecccccc
Confidence 34444555443 3345699999999999999999887668999999999999999887754 233457788788654
Q ss_pred CCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 155 LPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 155 l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
++...++||.|++....++ ...+++++.++|+||
T Consensus 82 ~~~~~~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~g 115 (124)
T TIGR02469 82 LEDSLPEPDRVFIGGSGGL---LQEILEAIWRRLRPG 115 (124)
T ss_pred ChhhcCCCCEEEECCcchh---HHHHHHHHHHHcCCC
Confidence 3333468999999876553 468899999999996
No 52
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.58 E-value=3.3e-14 Score=109.82 Aligned_cols=107 Identities=20% Similarity=0.143 Sum_probs=83.5
Q ss_pred HHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC
Q 029554 79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK 158 (191)
Q Consensus 79 ~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~ 158 (191)
..++..+.....+..+|||+|||+|.++..++..+ .+++|+|+|+.|++.++++.... ....++.+.+.|+..++
T Consensus 43 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~v~gvD~s~~~i~~a~~~~~~~-~~~~~i~~~~~d~~~~~-- 117 (219)
T TIGR02021 43 RKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRG--AIVKAVDISEQMVQMARNRAQGR-DVAGNVEFEVNDLLSLC-- 117 (219)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhc-CCCCceEEEECChhhCC--
Confidence 34444444212356799999999999999998876 79999999999999999887541 11236889999988775
Q ss_pred CCCcceEEeCCcccCcC--ChHHHHHHHHhccCCC
Q 029554 159 ESSLDLAISCLGLHWTN--DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 159 ~~~fDlVis~~~l~~~~--d~~~~l~~i~r~Lkpg 191 (191)
++||+|++..+++|++ ++..++.++.++++++
T Consensus 118 -~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~ 151 (219)
T TIGR02021 118 -GEFDIVVCMDVLIHYPASDMAKALGHLASLTKER 151 (219)
T ss_pred -CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCC
Confidence 7899999999998874 4567899999888764
No 53
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.58 E-value=1.1e-14 Score=115.72 Aligned_cols=110 Identities=15% Similarity=0.123 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC
Q 029554 75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF 154 (191)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~ 154 (191)
....+.+++.+. .+++.+|||||||.|.++..+++++ .++|+|+.+|+...+.+++++.+. +...++.+...|...
T Consensus 48 ~~k~~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~-gl~~~v~v~~~D~~~ 123 (273)
T PF02353_consen 48 ERKLDLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREA-GLEDRVEVRLQDYRD 123 (273)
T ss_dssp HHHHHHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCS-TSSSTEEEEES-GGG
T ss_pred HHHHHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhc-CCCCceEEEEeeccc
Confidence 333445555554 4588999999999999999999984 389999999999999999988752 334568888899877
Q ss_pred CCCCCCCcceEEeCCcccCc--CChHHHHHHHHhccCCC
Q 029554 155 LPLKESSLDLAISCLGLHWT--NDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 155 l~~~~~~fDlVis~~~l~~~--~d~~~~l~~i~r~Lkpg 191 (191)
++ ++||.|+|..++.|+ .+...+++++.++||||
T Consensus 124 ~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkpg 159 (273)
T PF02353_consen 124 LP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPG 159 (273)
T ss_dssp ------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETT
T ss_pred cC---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCC
Confidence 65 389999999999999 46789999999999997
No 54
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.57 E-value=8.5e-15 Score=109.07 Aligned_cols=90 Identities=14% Similarity=0.077 Sum_probs=79.1
Q ss_pred cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC-CC-CCCCCCcceEEe
Q 029554 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE-FL-PLKESSLDLAIS 167 (191)
Q Consensus 90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~-~l-~~~~~~fDlVis 167 (191)
.++.+|||+|||.|.+...|.+. ...+..|+|+++..+..|.++. +.++++|++ .+ .|++++||.||.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~rG---------v~Viq~Dld~gL~~f~d~sFD~VIl 81 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVARG---------VSVIQGDLDEGLADFPDQSFDYVIL 81 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHcC---------CCEEECCHHHhHhhCCCCCccEEeh
Confidence 47899999999999999999874 3488999999999999997764 678999976 45 489999999999
Q ss_pred CCcccCcCChHHHHHHHHhccC
Q 029554 168 CLGLHWTNDLPGAMIQVSIFLL 189 (191)
Q Consensus 168 ~~~l~~~~d~~~~l~~i~r~Lk 189 (191)
+.+|+++.++..+|.|+.|+=|
T Consensus 82 sqtLQ~~~~P~~vL~EmlRVgr 103 (193)
T PF07021_consen 82 SQTLQAVRRPDEVLEEMLRVGR 103 (193)
T ss_pred HhHHHhHhHHHHHHHHHHHhcC
Confidence 9999999999999999998754
No 55
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.57 E-value=1.2e-14 Score=124.30 Aligned_cols=104 Identities=18% Similarity=0.201 Sum_probs=85.0
Q ss_pred HHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC--CCCC
Q 029554 80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE--FLPL 157 (191)
Q Consensus 80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~--~l~~ 157 (191)
.++..+. ..+..+|||+|||+|.++..|++.+ .+|+++|+|+.|++.+++.. +...++.++++|+. .+++
T Consensus 28 ~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~----~~~~~i~~~~~d~~~~~~~~ 99 (475)
T PLN02336 28 EILSLLP--PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESIN----GHYKNVKFMCADVTSPDLNI 99 (475)
T ss_pred HHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHh----ccCCceEEEEecccccccCC
Confidence 4444444 2356689999999999999999876 79999999999998876532 23456889999975 4677
Q ss_pred CCCCcceEEeCCcccCcCC--hHHHHHHHHhccCCC
Q 029554 158 KESSLDLAISCLGLHWTND--LPGAMIQVSIFLLPD 191 (191)
Q Consensus 158 ~~~~fDlVis~~~l~~~~d--~~~~l~~i~r~Lkpg 191 (191)
++++||+|+++.+++|+.+ ...++.++.++||||
T Consensus 100 ~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~g 135 (475)
T PLN02336 100 SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVG 135 (475)
T ss_pred CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCC
Confidence 8889999999999999976 578999999999996
No 56
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.55 E-value=1.1e-13 Score=112.07 Aligned_cols=106 Identities=17% Similarity=0.068 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhc-ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhcc---CCCCceeeEecCC
Q 029554 77 VAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH---NDNIETCFVVGDE 152 (191)
Q Consensus 77 ~~~~l~~~l~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~---~~~~~~~~~~~d~ 152 (191)
+.+.++..+... ..++.+|||+|||+|.++..+.+.+ .+|+++|+|+.|++.++++..... ....++.+...|+
T Consensus 129 ~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g--~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl 206 (315)
T PLN02585 129 TVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEG--AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL 206 (315)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch
Confidence 334455554421 1256799999999999999999876 799999999999999998875411 1134577888887
Q ss_pred CCCCCCCCCcceEEeCCcccCcCCh--HHHHHHHHhc
Q 029554 153 EFLPLKESSLDLAISCLGLHWTNDL--PGAMIQVSIF 187 (191)
Q Consensus 153 ~~l~~~~~~fDlVis~~~l~~~~d~--~~~l~~i~r~ 187 (191)
+.+ +++||+|+|..+++|+++. ...+..+.++
T Consensus 207 ~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~l 240 (315)
T PLN02585 207 ESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLASL 240 (315)
T ss_pred hhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHhh
Confidence 654 4789999999999888653 3455555543
No 57
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.55 E-value=6.7e-14 Score=107.12 Aligned_cols=107 Identities=9% Similarity=-0.068 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC
Q 029554 76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF 154 (191)
Q Consensus 76 ~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~ 154 (191)
.+...+++.+. ..++.+|||+|||+|+.+..+++.. +..+|+++|+++.+++.+++++... ....++.+..+|...
T Consensus 59 ~~~~~~~~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~-~~~~~v~~~~~d~~~ 135 (205)
T PRK13944 59 HMVAMMCELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERL-GYWGVVEVYHGDGKR 135 (205)
T ss_pred HHHHHHHHhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEECCccc
Confidence 34445555554 3467899999999999998887754 2468999999999999999887641 112357889999776
Q ss_pred CCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 155 LPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 155 l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
.....++||.|+++.++++++ .++.++|+||
T Consensus 136 ~~~~~~~fD~Ii~~~~~~~~~------~~l~~~L~~g 166 (205)
T PRK13944 136 GLEKHAPFDAIIVTAAASTIP------SALVRQLKDG 166 (205)
T ss_pred CCccCCCccEEEEccCcchhh------HHHHHhcCcC
Confidence 544567899999999987764 4677889886
No 58
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.55 E-value=6.6e-15 Score=112.38 Aligned_cols=95 Identities=22% Similarity=0.177 Sum_probs=73.6
Q ss_pred CeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCccc
Q 029554 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLH 172 (191)
Q Consensus 93 ~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~ 172 (191)
..++|+|||+|..++.++..+ .+|+++|+|+.|++.+++..+. ............+...+--.++++|+|+|..++|
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~-~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~H 111 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPV-TYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVH 111 (261)
T ss_pred ceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCc-ccccCCccccccccccccCCCcceeeehhhhhHH
Confidence 379999999998888888887 9999999999999999876532 1111222223233333333378999999999999
Q ss_pred CcCChHHHHHHHHhccCCC
Q 029554 173 WTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 173 ~~~d~~~~l~~i~r~Lkpg 191 (191)
|+ |+..+++++.|+||++
T Consensus 112 WF-dle~fy~~~~rvLRk~ 129 (261)
T KOG3010|consen 112 WF-DLERFYKEAYRVLRKD 129 (261)
T ss_pred hh-chHHHHHHHHHHcCCC
Confidence 99 8999999999999874
No 59
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.55 E-value=2.4e-14 Score=108.67 Aligned_cols=99 Identities=11% Similarity=0.104 Sum_probs=82.0
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC---CCCCCcceEEe
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP---LKESSLDLAIS 167 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~---~~~~~fDlVis 167 (191)
...+|||||||+|.++..++...|..+++|+|+++.+++.++++... ....++.++++|+..++ ++++++|.|++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~--~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANK--LGLKNLHVLCGDANELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHH--hCCCCEEEEccCHHHHHHhhCCCCceeEEEE
Confidence 45689999999999999999988889999999999999999887764 23347899999986542 45678999999
Q ss_pred CCcccCcCCh--------HHHHHHHHhccCCC
Q 029554 168 CLGLHWTNDL--------PGAMIQVSIFLLPD 191 (191)
Q Consensus 168 ~~~l~~~~d~--------~~~l~~i~r~Lkpg 191 (191)
++...|.... ..++.++.++||||
T Consensus 94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~Lkpg 125 (194)
T TIGR00091 94 NFPDPWPKKRHNKRRITQPHFLKEYANVLKKG 125 (194)
T ss_pred ECCCcCCCCCccccccCCHHHHHHHHHHhCCC
Confidence 9887765432 57899999999997
No 60
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.54 E-value=4.3e-14 Score=106.32 Aligned_cols=95 Identities=16% Similarity=0.130 Sum_probs=76.5
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG 170 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~ 170 (191)
++.++||+|||.|.++..|++.| ..|+++|.|+..++.+++.... ....+...+.|++...++ +.||+|++..+
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G--~~VtAvD~s~~al~~l~~~a~~---~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v 103 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQG--FDVTAVDISPVALEKLQRLAEE---EGLDIRTRVADLNDFDFP-EEYDFIVSTVV 103 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHH---TT-TEEEEE-BGCCBS-T-TTEEEEEEESS
T ss_pred CCCcEEEcCCCCcHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHhh---cCceeEEEEecchhcccc-CCcCEEEEEEE
Confidence 56799999999999999999998 8999999999999998776654 344588889998877765 68999999999
Q ss_pred ccCcC--ChHHHHHHHHhccCCC
Q 029554 171 LHWTN--DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 171 l~~~~--d~~~~l~~i~r~Lkpg 191 (191)
++|++ ..+.++..+...++||
T Consensus 104 ~~fL~~~~~~~i~~~m~~~~~pG 126 (192)
T PF03848_consen 104 FMFLQRELRPQIIENMKAATKPG 126 (192)
T ss_dssp GGGS-GGGHHHHHHHHHHTEEEE
T ss_pred eccCCHHHHHHHHHHHHhhcCCc
Confidence 99885 4567899999999886
No 61
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.54 E-value=9.3e-14 Score=109.71 Aligned_cols=106 Identities=13% Similarity=0.044 Sum_probs=88.6
Q ss_pred HHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC
Q 029554 79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK 158 (191)
Q Consensus 79 ~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~ 158 (191)
+.+.+.+. ..++.+|||||||-|.++..+++.+ ..+|+|+++|+++.+.+++++... +...++++...|...+.
T Consensus 62 ~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~-gl~~~v~v~l~d~rd~~-- 135 (283)
T COG2230 62 DLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAAR-GLEDNVEVRLQDYRDFE-- 135 (283)
T ss_pred HHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHc-CCCcccEEEeccccccc--
Confidence 34444444 4689999999999999999999986 589999999999999999988651 23457888888887764
Q ss_pred CCCcceEEeCCcccCcCC--hHHHHHHHHhccCCC
Q 029554 159 ESSLDLAISCLGLHWTND--LPGAMIQVSIFLLPD 191 (191)
Q Consensus 159 ~~~fDlVis~~~l~~~~d--~~~~l~~i~r~Lkpg 191 (191)
+.||-|+|..+++|+.. .+.++..+.++|+||
T Consensus 136 -e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~ 169 (283)
T COG2230 136 -EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPG 169 (283)
T ss_pred -cccceeeehhhHHHhCcccHHHHHHHHHhhcCCC
Confidence 44999999999999965 899999999999997
No 62
>PLN03075 nicotianamine synthase; Provisional
Probab=99.52 E-value=2.4e-13 Score=108.43 Aligned_cols=100 Identities=7% Similarity=0.025 Sum_probs=80.6
Q ss_pred CCCeEEEEcCCccHHHHHH--hhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC
Q 029554 91 TFPTALCLGGSLEAVRRLL--RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC 168 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l--~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~ 168 (191)
.+.+|+|||||.|.++..+ +..+|..+++++|+++.+++.|++.+........++.|..+|+...+...+.||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 6789999999988554443 34567789999999999999999887431233456999999987654334789999999
Q ss_pred CcccCc--CChHHHHHHHHhccCCC
Q 029554 169 LGLHWT--NDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 169 ~~l~~~--~d~~~~l~~i~r~Lkpg 191 (191)
+++++ .++..++.++.++|+||
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPG 226 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPG 226 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCC
Confidence 88877 68999999999999997
No 63
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.52 E-value=1.4e-13 Score=114.49 Aligned_cols=94 Identities=16% Similarity=0.077 Sum_probs=78.5
Q ss_pred ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC
Q 029554 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC 168 (191)
Q Consensus 89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~ 168 (191)
..++.+|||||||+|.++..+++.. ..+|+++|+|+.+++.++++... ..+.+...|...+ +++||.|++.
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~-----l~v~~~~~D~~~l---~~~fD~Ivs~ 235 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAG-----LPVEIRLQDYRDL---NGQFDRIVSV 235 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhcc-----CeEEEEECchhhc---CCCCCEEEEe
Confidence 3477899999999999999898764 36899999999999999987632 2367777787655 3689999999
Q ss_pred CcccCcC--ChHHHHHHHHhccCCC
Q 029554 169 LGLHWTN--DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 169 ~~l~~~~--d~~~~l~~i~r~Lkpg 191 (191)
.+++|++ ++..+++++.++||||
T Consensus 236 ~~~ehvg~~~~~~~l~~i~r~LkpG 260 (383)
T PRK11705 236 GMFEHVGPKNYRTYFEVVRRCLKPD 260 (383)
T ss_pred CchhhCChHHHHHHHHHHHHHcCCC
Confidence 9999985 4578999999999997
No 64
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.52 E-value=2.3e-13 Score=104.65 Aligned_cols=99 Identities=10% Similarity=-0.065 Sum_probs=79.0
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhh----------ccCCCCceeeEecCCCCCCCC-C
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD----------AHNDNIETCFVVGDEEFLPLK-E 159 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~----------~~~~~~~~~~~~~d~~~l~~~-~ 159 (191)
++.+|||+|||.|..+..|+++| .+|+|+|+|+.+++.+.++... ......++++.++|+..++.. .
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G--~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQG--HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCC--CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 56799999999999999999988 8999999999999986443210 001234688999998877633 4
Q ss_pred CCcceEEeCCcccCcC--ChHHHHHHHHhccCCC
Q 029554 160 SSLDLAISCLGLHWTN--DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 160 ~~fDlVis~~~l~~~~--d~~~~l~~i~r~Lkpg 191 (191)
+.||.|+-..+++|++ .....+..+.++||||
T Consensus 112 ~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpg 145 (213)
T TIGR03840 112 GPVDAVYDRAALIALPEEMRQRYAAHLLALLPPG 145 (213)
T ss_pred CCcCEEEechhhccCCHHHHHHHHHHHHHHcCCC
Confidence 6799999999999985 3456899999999997
No 65
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.51 E-value=4e-13 Score=101.32 Aligned_cols=112 Identities=15% Similarity=0.072 Sum_probs=84.9
Q ss_pred chHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEec
Q 029554 71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVG 150 (191)
Q Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~ 150 (191)
...++.+...++..+. ..++.+|||+|||+|.++..++..++..+++++|+|+.+++.++++... ....++.++.+
T Consensus 13 ~~~~~~~r~~~~~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~--~~~~~i~~~~~ 88 (187)
T PRK08287 13 PMTKEEVRALALSKLE--LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQR--FGCGNIDIIPG 88 (187)
T ss_pred CCchHHHHHHHHHhcC--CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--hCCCCeEEEec
Confidence 3445555555555554 3367799999999999999998887778999999999999999987754 22235788888
Q ss_pred CCCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 151 DEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 151 d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
|.. .++ .++||+|+++...+ .+..++.++.++|+||
T Consensus 89 d~~-~~~-~~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~g 124 (187)
T PRK08287 89 EAP-IEL-PGKADAIFIGGSGG---NLTAIIDWSLAHLHPG 124 (187)
T ss_pred Cch-hhc-CcCCCEEEECCCcc---CHHHHHHHHHHhcCCC
Confidence 864 233 35799999987654 3567889999999986
No 66
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.51 E-value=3.1e-13 Score=100.54 Aligned_cols=106 Identities=26% Similarity=0.246 Sum_probs=81.1
Q ss_pred HHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCC
Q 029554 81 LLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKES 160 (191)
Q Consensus 81 l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 160 (191)
|++.+. .....+|||+|||+|.++..++..++..+|+++|+++.+++.++++... +...++.+...|..... +++
T Consensus 23 L~~~l~--~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~--n~~~~v~~~~~d~~~~~-~~~ 97 (170)
T PF05175_consen 23 LLDNLP--KHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAER--NGLENVEVVQSDLFEAL-PDG 97 (170)
T ss_dssp HHHHHH--HHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHH--TTCTTEEEEESSTTTTC-CTT
T ss_pred HHHHHh--hccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh--cCccccccccccccccc-ccc
Confidence 444444 2367789999999999999999998877899999999999999988875 33334888888854322 368
Q ss_pred CcceEEeCCcccCcCC-----hHHHHHHHHhccCCC
Q 029554 161 SLDLAISCLGLHWTND-----LPGAMIQVSIFLLPD 191 (191)
Q Consensus 161 ~fDlVis~~~l~~~~d-----~~~~l~~i~r~Lkpg 191 (191)
+||+|+||--++.-.+ ...++.+..++|+||
T Consensus 98 ~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~ 133 (170)
T PF05175_consen 98 KFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPG 133 (170)
T ss_dssp CEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEE
T ss_pred ceeEEEEccchhcccccchhhHHHHHHHHHHhccCC
Confidence 9999999987766544 467888999999885
No 67
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.51 E-value=3.8e-13 Score=103.46 Aligned_cols=108 Identities=10% Similarity=-0.031 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCC
Q 029554 74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE 152 (191)
Q Consensus 74 ~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~ 152 (191)
...+...+++.+. ..++.+|||+|||+|+.+..++... +..+|+++|+++.+++.++++... ....++.++.+|.
T Consensus 61 ~p~~~~~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~--~g~~~v~~~~gd~ 136 (212)
T PRK13942 61 AIHMVAIMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKK--LGYDNVEVIVGDG 136 (212)
T ss_pred cHHHHHHHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH--cCCCCeEEEECCc
Confidence 3445556666655 4578899999999999999887763 346999999999999999998865 2335689999997
Q ss_pred CCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 153 EFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 153 ~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
.....+.++||+|++..+.++++ ..+.+.||||
T Consensus 137 ~~~~~~~~~fD~I~~~~~~~~~~------~~l~~~Lkpg 169 (212)
T PRK13942 137 TLGYEENAPYDRIYVTAAGPDIP------KPLIEQLKDG 169 (212)
T ss_pred ccCCCcCCCcCEEEECCCcccch------HHHHHhhCCC
Confidence 76555668899999988776542 3566788886
No 68
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.50 E-value=3.9e-13 Score=104.26 Aligned_cols=106 Identities=20% Similarity=0.151 Sum_probs=78.7
Q ss_pred HHHHHHHHhc-ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC
Q 029554 79 ENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL 157 (191)
Q Consensus 79 ~~l~~~l~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~ 157 (191)
..++..+... ..+..+|||+|||+|.++..+.+.+ .+|+++|+|+.|++.++++.... ....++.+..+|++.
T Consensus 50 ~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~-~~~~~i~~~~~d~~~--- 123 (230)
T PRK07580 50 DTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEA-GLAGNITFEVGDLES--- 123 (230)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhc-CCccCcEEEEcCchh---
Confidence 3444444421 2356799999999999999998876 67999999999999999887541 111467888888433
Q ss_pred CCCCcceEEeCCcccCcC--ChHHHHHHHHhccCC
Q 029554 158 KESSLDLAISCLGLHWTN--DLPGAMIQVSIFLLP 190 (191)
Q Consensus 158 ~~~~fDlVis~~~l~~~~--d~~~~l~~i~r~Lkp 190 (191)
.+++||+|++..+++|++ +....++++.+++++
T Consensus 124 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~ 158 (230)
T PRK07580 124 LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRG 158 (230)
T ss_pred ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCC
Confidence 357899999999998875 345677888776654
No 69
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.50 E-value=2.4e-13 Score=112.11 Aligned_cols=100 Identities=9% Similarity=0.019 Sum_probs=84.9
Q ss_pred cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC--CCCCCCcceEEe
Q 029554 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL--PLKESSLDLAIS 167 (191)
Q Consensus 90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l--~~~~~~fDlVis 167 (191)
..+..+||||||+|..+..++...|...++|+|+++.+++.+.++... ....++.++++|+..+ .++++++|.|++
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~--~gL~NV~~i~~DA~~ll~~~~~~s~D~I~l 198 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIEL--LNLKNLLIINYDARLLLELLPSNSVEKIFV 198 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHH--cCCCcEEEEECCHHHhhhhCCCCceeEEEE
Confidence 345689999999999999999998889999999999999999988765 3446799999997643 467899999999
Q ss_pred CCcccCcCCh------HHHHHHHHhccCCC
Q 029554 168 CLGLHWTNDL------PGAMIQVSIFLLPD 191 (191)
Q Consensus 168 ~~~l~~~~d~------~~~l~~i~r~Lkpg 191 (191)
++...|.... ..++.++.++|+||
T Consensus 199 nFPdPW~KkrHRRlv~~~fL~e~~RvLkpG 228 (390)
T PRK14121 199 HFPVPWDKKPHRRVISEDFLNEALRVLKPG 228 (390)
T ss_pred eCCCCccccchhhccHHHHHHHHHHHcCCC
Confidence 9887776443 57899999999997
No 70
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.49 E-value=4.1e-13 Score=100.57 Aligned_cols=94 Identities=15% Similarity=0.092 Sum_probs=76.2
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG 170 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~ 170 (191)
++.+|||+|||+|.++..+...+ .+++++|+|+.+++.++++... ...++.+..+|..... .++||+|+++..
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p 91 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKG--KCILTTDINPFAVKELRENAKL---NNVGLDVVMTDLFKGV--RGKFDVILFNPP 91 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHH---cCCceEEEEccccccc--CCcccEEEECCC
Confidence 55789999999999999999887 4899999999999999988754 2235778888875543 358999999988
Q ss_pred ccCcCC---------------------hHHHHHHHHhccCCC
Q 029554 171 LHWTND---------------------LPGAMIQVSIFLLPD 191 (191)
Q Consensus 171 l~~~~d---------------------~~~~l~~i~r~Lkpg 191 (191)
+++..+ ...++.++.++|+||
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g 133 (179)
T TIGR00537 92 YLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEG 133 (179)
T ss_pred CCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCC
Confidence 776643 245799999999986
No 71
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.49 E-value=9.5e-13 Score=102.45 Aligned_cols=97 Identities=11% Similarity=0.082 Sum_probs=81.0
Q ss_pred cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-CCCCCcceEEeC
Q 029554 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-LKESSLDLAISC 168 (191)
Q Consensus 90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-~~~~~fDlVis~ 168 (191)
.++.+|||+|||+|.++..+.+.+ .+++++|+++.+++.++++... ....+.+...+....+ ..++.||+|+++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~---~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~ 121 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLG--ADVTGIDASEENIEVARLHALE---SGLKIDYRQTTAEELAAEHPGQFDVVTCM 121 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcC--CeEEEEcCCHHHHHHHHHHHHH---cCCceEEEecCHHHhhhhcCCCccEEEEh
Confidence 357789999999999999998876 7899999999999999887653 2224667777766554 345789999999
Q ss_pred CcccCcCChHHHHHHHHhccCCC
Q 029554 169 LGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 169 ~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
.+++|+.++..++.++.++|+||
T Consensus 122 ~~l~~~~~~~~~l~~~~~~L~~g 144 (233)
T PRK05134 122 EMLEHVPDPASFVRACAKLVKPG 144 (233)
T ss_pred hHhhccCCHHHHHHHHHHHcCCC
Confidence 99999999999999999999986
No 72
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.48 E-value=2.7e-13 Score=104.83 Aligned_cols=97 Identities=16% Similarity=0.109 Sum_probs=81.5
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC-CCCcceEEeCC
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK-ESSLDLAISCL 169 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~-~~~fDlVis~~ 169 (191)
.+.+|||+|||+|.++..+.+.+ .+++++|+++.+++.++++... ....++.+...|...++.. .++||+|+++.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~ 120 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKK--DPLLKIEYRCTSVEDLAEKGAKSFDVVTCME 120 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHH--cCCCceEEEeCCHHHhhcCCCCCccEEEehh
Confidence 36689999999999999888766 6799999999999999887754 1222577888887766543 37899999999
Q ss_pred cccCcCChHHHHHHHHhccCCC
Q 029554 170 GLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 170 ~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
+++|+.++..++.++.++|+||
T Consensus 121 ~l~~~~~~~~~l~~~~~~L~~g 142 (224)
T TIGR01983 121 VLEHVPDPQAFIRACAQLLKPG 142 (224)
T ss_pred HHHhCCCHHHHHHHHHHhcCCC
Confidence 9999999999999999999986
No 73
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.47 E-value=7e-13 Score=108.69 Aligned_cols=96 Identities=16% Similarity=0.057 Sum_probs=77.7
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG 170 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~ 170 (191)
..++|||+|||+|.++..+.+.+|..+|+++|+|+.+++.++++... +. ....++..|.... .++.||+|+||..
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~--n~-l~~~~~~~D~~~~--~~~~fDlIvsNPP 270 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAA--NG-LEGEVFASNVFSD--IKGRFDMIISNPP 270 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH--cC-CCCEEEEcccccc--cCCCccEEEECCC
Confidence 45689999999999999999988778999999999999999988765 22 2346666775432 2578999999999
Q ss_pred ccCcC-----ChHHHHHHHHhccCCC
Q 029554 171 LHWTN-----DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 171 l~~~~-----d~~~~l~~i~r~Lkpg 191 (191)
+|+.. ....++.++.++||||
T Consensus 271 FH~g~~~~~~~~~~~i~~a~~~Lkpg 296 (342)
T PRK09489 271 FHDGIQTSLDAAQTLIRGAVRHLNSG 296 (342)
T ss_pred ccCCccccHHHHHHHHHHHHHhcCcC
Confidence 98742 3468899999999996
No 74
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.47 E-value=3.9e-13 Score=111.11 Aligned_cols=99 Identities=9% Similarity=-0.021 Sum_probs=78.0
Q ss_pred CCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccC-CCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHN-DNIETCFVVGDEEFLPLKESSLDLAISCLG 170 (191)
Q Consensus 92 ~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~-~~~~~~~~~~d~~~l~~~~~~fDlVis~~~ 170 (191)
..+|||+|||+|.++..+++.+|..+|+++|+|+.+++.++++...... ...++.+...|.... +++++||+|+||--
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNPP 307 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNPP 307 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECcC
Confidence 4689999999999999999988889999999999999999988754211 123578888885432 24468999999977
Q ss_pred ccCcC-----ChHHHHHHHHhccCCC
Q 029554 171 LHWTN-----DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 171 l~~~~-----d~~~~l~~i~r~Lkpg 191 (191)
+|... ....++.++.++|+||
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpG 333 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKIN 333 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccC
Confidence 77542 2357889999999996
No 75
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.47 E-value=8.3e-13 Score=101.76 Aligned_cols=107 Identities=11% Similarity=-0.057 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC
Q 029554 75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE 153 (191)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~ 153 (191)
..+...+++.+. ..++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.+++++.. ....++.++.+|..
T Consensus 63 p~~~~~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~--~g~~~v~~~~~d~~ 138 (215)
T TIGR00080 63 PHMVAMMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRK--LGLDNVIVIVGDGT 138 (215)
T ss_pred HHHHHHHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH--CCCCCeEEEECCcc
Confidence 334456666655 45778999999999999999987652 35699999999999999998865 23356889999976
Q ss_pred CCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 154 FLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 154 ~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
......++||+|++..+..++. ..+.+.|+||
T Consensus 139 ~~~~~~~~fD~Ii~~~~~~~~~------~~~~~~L~~g 170 (215)
T TIGR00080 139 QGWEPLAPYDRIYVTAAGPKIP------EALIDQLKEG 170 (215)
T ss_pred cCCcccCCCCEEEEcCCccccc------HHHHHhcCcC
Confidence 5443456899999987766553 4567788886
No 76
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.46 E-value=1.4e-14 Score=109.81 Aligned_cols=127 Identities=20% Similarity=0.210 Sum_probs=93.2
Q ss_pred HHHHHHHHHhhhhcCC-----CchHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHH
Q 029554 54 HLKRKQRDRAAWLTRP-----NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDML 128 (191)
Q Consensus 54 ~~~~~~~~~~a~~y~~-----~~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l 128 (191)
.++..-||..++.|+. ..|.-.+...+++..+. ..++.++||+|||||..+..|.... .+++|+|+|+.|+
T Consensus 85 aYVe~LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl 160 (287)
T COG4976 85 AYVETLFDQYAERFDHILVDKLGYSVPELLAEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENML 160 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcc--CCccceeeecccCcCcccHhHHHHH--hhccCCchhHHHH
Confidence 3556666776665554 34444444555555554 4458899999999999999999887 8999999999999
Q ss_pred HHHHHhhhhccCCCCceeeEecCCC-CCC-CCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 129 KLCKDAQQDAHNDNIETCFVVGDEE-FLP-LKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 129 ~~a~~~~~~~~~~~~~~~~~~~d~~-~l~-~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
+.+.++--. -...+.+.. .++ ..+..||+|++.-++.|+.++..++.-+...|+||
T Consensus 161 ~kA~eKg~Y-------D~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~g 218 (287)
T COG4976 161 AKAHEKGLY-------DTLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPG 218 (287)
T ss_pred HHHHhccch-------HHHHHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCC
Confidence 999876421 111222222 222 34567999999999999999999999999999986
No 77
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.46 E-value=6.3e-13 Score=105.39 Aligned_cols=108 Identities=19% Similarity=0.065 Sum_probs=82.2
Q ss_pred HHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC
Q 029554 79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK 158 (191)
Q Consensus 79 ~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~ 158 (191)
+++...+. .-.+.+|||||||.|+.+..+...+ ...|+|+|++.....+.+-...- .+....+......++.+|.
T Consensus 105 ~rl~p~l~--~L~gk~VLDIGC~nGY~~frM~~~G-A~~ViGiDP~~lf~~QF~~i~~~-lg~~~~~~~lplgvE~Lp~- 179 (315)
T PF08003_consen 105 DRLLPHLP--DLKGKRVLDIGCNNGYYSFRMLGRG-AKSVIGIDPSPLFYLQFEAIKHF-LGQDPPVFELPLGVEDLPN- 179 (315)
T ss_pred HHHHhhhC--CcCCCEEEEecCCCcHHHHHHhhcC-CCEEEEECCChHHHHHHHHHHHH-hCCCccEEEcCcchhhccc-
Confidence 34555554 3467899999999999999888877 36799999999877665332211 1112233444456888886
Q ss_pred CCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 159 ESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 159 ~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
.+.||+|+|..+|+|..|+-..|.+++..|+||
T Consensus 180 ~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~g 212 (315)
T PF08003_consen 180 LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPG 212 (315)
T ss_pred cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCC
Confidence 789999999999999999999999999999986
No 78
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.44 E-value=1.7e-12 Score=105.10 Aligned_cols=98 Identities=9% Similarity=-0.012 Sum_probs=80.9
Q ss_pred cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL 169 (191)
Q Consensus 90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~ 169 (191)
.+..+|||||||+|..+..+.+.+|..+++++|. +.+++.++++.... +...++.++.+|+...++++ +|+|++..
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~-gl~~rv~~~~~d~~~~~~~~--~D~v~~~~ 223 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEK-GVADRMRGIAVDIYKESYPE--ADAVLFCR 223 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhC-CccceEEEEecCccCCCCCC--CCEEEeEh
Confidence 3567999999999999999999988889999997 78999998877541 23456899999987655543 69999999
Q ss_pred cccCcCCh--HHHHHHHHhccCCC
Q 029554 170 GLHWTNDL--PGAMIQVSIFLLPD 191 (191)
Q Consensus 170 ~l~~~~d~--~~~l~~i~r~Lkpg 191 (191)
++|++++. ..+++++.++|+||
T Consensus 224 ~lh~~~~~~~~~il~~~~~~L~pg 247 (306)
T TIGR02716 224 ILYSANEQLSTIMCKKAFDAMRSG 247 (306)
T ss_pred hhhcCChHHHHHHHHHHHHhcCCC
Confidence 99988654 57899999999997
No 79
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.42 E-value=2.5e-12 Score=99.27 Aligned_cols=99 Identities=13% Similarity=-0.035 Sum_probs=78.8
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhc----------cCCCCceeeEecCCCCCCCC-C
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA----------HNDNIETCFVVGDEEFLPLK-E 159 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~----------~~~~~~~~~~~~d~~~l~~~-~ 159 (191)
++.+|||+|||.|..+..|++.+ .+|+|+|+|+..++.+.++.... .....++.+.++|+..++.. .
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G--~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQG--HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCC--CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 56799999999999999999988 89999999999999875322100 01234688899998877533 2
Q ss_pred CCcceEEeCCcccCcC--ChHHHHHHHHhccCCC
Q 029554 160 SSLDLAISCLGLHWTN--DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 160 ~~fDlVis~~~l~~~~--d~~~~l~~i~r~Lkpg 191 (191)
+.||+|+-..+++|++ .....+..+.++|+||
T Consensus 115 ~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pg 148 (218)
T PRK13255 115 ADVDAVYDRAALIALPEEMRERYVQQLAALLPAG 148 (218)
T ss_pred CCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCC
Confidence 5799999999999985 3467899999999997
No 80
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=6.3e-13 Score=105.39 Aligned_cols=118 Identities=19% Similarity=0.169 Sum_probs=85.7
Q ss_pred CCCchHHHHH--HHHH-HHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCc
Q 029554 68 RPNDSFVDAV--AENL-LDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIE 144 (191)
Q Consensus 68 ~~~~~~~~~~--~~~l-~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~ 144 (191)
+...|.++.+ ++++ ++.++ .....+|||+|||.|.++..+++..|..+++++|+|...++.++++... |...+
T Consensus 134 ~pGVFS~~~lD~GS~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~--N~~~~ 209 (300)
T COG2813 134 LPGVFSRDKLDKGSRLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAA--NGVEN 209 (300)
T ss_pred CCCCCcCCCcChHHHHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHH--cCCCc
Confidence 3345555444 4444 44444 3345599999999999999999999999999999999999999998875 44444
Q ss_pred eeeEecCCCCCCCCCCCcceEEeCCcccCcCCh-----HHHHHHHHhccCCC
Q 029554 145 TCFVVGDEEFLPLKESSLDLAISCLGLHWTNDL-----PGAMIQVSIFLLPD 191 (191)
Q Consensus 145 ~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~-----~~~l~~i~r~Lkpg 191 (191)
..+...|.-. +.++ +||+||||=-+|--.+. ..++.+..+.|++|
T Consensus 210 ~~v~~s~~~~-~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~g 259 (300)
T COG2813 210 TEVWASNLYE-PVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPG 259 (300)
T ss_pred cEEEEecccc-cccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccC
Confidence 4455555332 2233 89999999888854332 26888999999886
No 81
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.41 E-value=4.7e-12 Score=97.31 Aligned_cols=106 Identities=10% Similarity=-0.084 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC
Q 029554 74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE 153 (191)
Q Consensus 74 ~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~ 153 (191)
...+...++..+. ..++.+|||+|||+|..+..++... .+++++|+++.+++.+++++.. ....++.+..+|..
T Consensus 63 ~p~~~~~l~~~l~--~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~--~~~~~v~~~~~d~~ 136 (212)
T PRK00312 63 QPYMVARMTELLE--LKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQ--LGLHNVSVRHGDGW 136 (212)
T ss_pred cHHHHHHHHHhcC--CCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHH--CCCCceEEEECCcc
Confidence 3444455555554 4567899999999999998887765 5899999999999999988765 23345888888865
Q ss_pred CCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 154 FLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 154 ~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
....+.++||+|++..+++++ ..++.+.|+||
T Consensus 137 ~~~~~~~~fD~I~~~~~~~~~------~~~l~~~L~~g 168 (212)
T PRK00312 137 KGWPAYAPFDRILVTAAAPEI------PRALLEQLKEG 168 (212)
T ss_pred cCCCcCCCcCEEEEccCchhh------hHHHHHhcCCC
Confidence 432234789999998877655 34567888886
No 82
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.41 E-value=4.9e-12 Score=96.28 Aligned_cols=112 Identities=13% Similarity=0.073 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCC
Q 029554 74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE 152 (191)
Q Consensus 74 ~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~ 152 (191)
+.++....+..+. ..++.+|||+|||+|.++..++.. ++..+|+++|+++.+++.++++.... +...++.++.+|.
T Consensus 25 ~~~~r~~~l~~l~--~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~-g~~~~v~~~~~d~ 101 (198)
T PRK00377 25 KEEIRALALSKLR--LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF-GVLNNIVLIKGEA 101 (198)
T ss_pred HHHHHHHHHHHcC--CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh-CCCCCeEEEEech
Confidence 3444333333443 457789999999999999887654 44578999999999999999887651 1135678888887
Q ss_pred CC-CCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 153 EF-LPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 153 ~~-l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
.. ++...+.||.|+++.. ..++..++.++.++|+||
T Consensus 102 ~~~l~~~~~~~D~V~~~~~---~~~~~~~l~~~~~~Lkpg 138 (198)
T PRK00377 102 PEILFTINEKFDRIFIGGG---SEKLKEIISASWEIIKKG 138 (198)
T ss_pred hhhHhhcCCCCCEEEECCC---cccHHHHHHHHHHHcCCC
Confidence 64 3323468999999753 347788999999999996
No 83
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.39 E-value=6e-12 Score=101.71 Aligned_cols=100 Identities=17% Similarity=0.047 Sum_probs=75.2
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CCCCCC----Ccce
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LPLKES----SLDL 164 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~~~~~----~fDl 164 (191)
++.+|||+|||+|..+..|.+..+ ..+|+++|+|+.|++.++++.... ....++.++++|+.. ++++.. ...+
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~-~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD-YPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh-CCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 557899999999999999987754 478999999999999999886531 123457778899764 443322 2334
Q ss_pred EEeCCcccCcC--ChHHHHHHHHhccCCC
Q 029554 165 AISCLGLHWTN--DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 165 Vis~~~l~~~~--d~~~~l~~i~r~Lkpg 191 (191)
+++..++++++ +...+++++.++|+||
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pg 170 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPG 170 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCCC
Confidence 55556788775 4567899999999997
No 84
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.39 E-value=2.6e-12 Score=98.63 Aligned_cols=89 Identities=17% Similarity=0.066 Sum_probs=70.7
Q ss_pred cCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--------CCCC
Q 029554 90 KTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--------LKES 160 (191)
Q Consensus 90 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--------~~~~ 160 (191)
.++.+|||+|||+|.++..+++.. +...|+++|+++ |. ...++.++++|+...+ +.++
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~------------~~~~v~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD------------PIVGVDFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc------------CCCCcEEEecCCCChHHHHHHHHHhCCC
Confidence 467799999999999999888764 446999999998 21 1234788999987643 5678
Q ss_pred CcceEEeCCcccCcCCh-----------HHHHHHHHhccCCC
Q 029554 161 SLDLAISCLGLHWTNDL-----------PGAMIQVSIFLLPD 191 (191)
Q Consensus 161 ~fDlVis~~~l~~~~d~-----------~~~l~~i~r~Lkpg 191 (191)
+||+|+|+.+.++..++ ..++.++.++||||
T Consensus 117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpG 158 (209)
T PRK11188 117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPG 158 (209)
T ss_pred CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999988886543 35789999999997
No 85
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.37 E-value=8.3e-12 Score=100.30 Aligned_cols=96 Identities=10% Similarity=-0.012 Sum_probs=72.5
Q ss_pred ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC
Q 029554 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC 168 (191)
Q Consensus 89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~ 168 (191)
..++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.++++... .+....+.+...+.. +..+++||+|++|
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~-n~~~~~~~~~~~~~~--~~~~~~fDlVvan 232 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAEL-NQVSDRLQVKLIYLE--QPIEGKADVIVAN 232 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHH-cCCCcceEEEecccc--cccCCCceEEEEe
Confidence 3467899999999999998887765 46899999999999999988764 122233455555532 2345789999998
Q ss_pred CcccCcCChHHHHHHHHhccCCC
Q 029554 169 LGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 169 ~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
...+ ....++.++.++||||
T Consensus 233 ~~~~---~l~~ll~~~~~~Lkpg 252 (288)
T TIGR00406 233 ILAE---VIKELYPQFSRLVKPG 252 (288)
T ss_pred cCHH---HHHHHHHHHHHHcCCC
Confidence 7654 3467899999999996
No 86
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.36 E-value=1.6e-11 Score=93.34 Aligned_cols=112 Identities=11% Similarity=0.017 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecC
Q 029554 72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGD 151 (191)
Q Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d 151 (191)
..+.++...++..+. ..++.+|||+|||+|.++..++...+..+|+++|+|+.+++.++++... ....+++++.+|
T Consensus 23 ~t~~~v~~~l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~--~~~~~v~~~~~d 98 (196)
T PRK07402 23 LTKREVRLLLISQLR--LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDR--FGVKNVEVIEGS 98 (196)
T ss_pred CCHHHHHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH--hCCCCeEEEECc
Confidence 344555545555554 3467899999999999999887766668999999999999999988764 223468888888
Q ss_pred CCC-CCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 152 EEF-LPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 152 ~~~-l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
+.. ++.....+|.|+... ..+...++.++.++|+||
T Consensus 99 ~~~~~~~~~~~~d~v~~~~----~~~~~~~l~~~~~~Lkpg 135 (196)
T PRK07402 99 APECLAQLAPAPDRVCIEG----GRPIKEILQAVWQYLKPG 135 (196)
T ss_pred hHHHHhhCCCCCCEEEEEC----CcCHHHHHHHHHHhcCCC
Confidence 653 222223467765532 235678999999999997
No 87
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.35 E-value=1.4e-11 Score=96.60 Aligned_cols=98 Identities=18% Similarity=0.094 Sum_probs=75.8
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG 170 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~ 170 (191)
...+|||+|||+|..+..++...+..+++++|+|+.+++.+++.... ....++.+..+|... ++++++||+|++|--
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~--~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npP 163 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAAR--LGLDNVTFLQSDWFE-PLPGGKFDLIVSNPP 163 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--cCCCeEEEEECchhc-cCcCCceeEEEECCC
Confidence 44589999999999999999887778999999999999999988764 233468889999755 345688999999754
Q ss_pred ccCcC--------------------------ChHHHHHHHHhccCCC
Q 029554 171 LHWTN--------------------------DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 171 l~~~~--------------------------d~~~~l~~i~r~Lkpg 191 (191)
..... ....++.++.++|+||
T Consensus 164 y~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~g 210 (251)
T TIGR03534 164 YIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPG 210 (251)
T ss_pred CCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccC
Confidence 32111 1235678899999986
No 88
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.34 E-value=1.2e-11 Score=82.60 Aligned_cols=95 Identities=27% Similarity=0.261 Sum_probs=77.6
Q ss_pred eEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC-CCCCcceEEeCCccc
Q 029554 94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL-KESSLDLAISCLGLH 172 (191)
Q Consensus 94 ~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~-~~~~fDlVis~~~l~ 172 (191)
+|||+|||.|..+..+.. .+..+++++|+++..+..+++.... ....++.+...|...... ..++||+|+++..++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAA--LLADNVEVLKGDAEELPPEADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhc--ccccceEEEEcChhhhccccCCceEEEEEcccee
Confidence 489999999999998887 4468999999999999988743322 344568888888776543 457899999999999
Q ss_pred C-cCChHHHHHHHHhccCCC
Q 029554 173 W-TNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 173 ~-~~d~~~~l~~i~r~Lkpg 191 (191)
+ ..+....+..+.++|+||
T Consensus 78 ~~~~~~~~~l~~~~~~l~~~ 97 (107)
T cd02440 78 HLVEDLARFLEEARRLLKPG 97 (107)
T ss_pred ehhhHHHHHHHHHHHHcCCC
Confidence 8 778889999999999986
No 89
>PRK14967 putative methyltransferase; Provisional
Probab=99.34 E-value=2.1e-11 Score=94.50 Aligned_cols=97 Identities=13% Similarity=0.023 Sum_probs=73.0
Q ss_pred cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL 169 (191)
Q Consensus 90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~ 169 (191)
.++.+|||+|||+|.++..++..+ ..+++++|+|+.+++.++++... ...++.++.+|+... +++++||+|+++-
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~---~~~~~~~~~~d~~~~-~~~~~fD~Vi~np 109 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALL---AGVDVDVRRGDWARA-VEFRPFDVVVSNP 109 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHH---hCCeeEEEECchhhh-ccCCCeeEEEECC
Confidence 356799999999999999888764 35999999999999999887754 223477788886543 3567899999985
Q ss_pred cccCcCC---------------------hHHHHHHHHhccCCC
Q 029554 170 GLHWTND---------------------LPGAMIQVSIFLLPD 191 (191)
Q Consensus 170 ~l~~~~d---------------------~~~~l~~i~r~Lkpg 191 (191)
-.....+ ...++.++.++||||
T Consensus 110 Py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~g 152 (223)
T PRK14967 110 PYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPG 152 (223)
T ss_pred CCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCC
Confidence 4322111 345788899999986
No 90
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.34 E-value=3.1e-12 Score=94.24 Aligned_cols=73 Identities=22% Similarity=0.194 Sum_probs=63.1
Q ss_pred EEEECChhHHHHHHHhhhhcc-CCCCceeeEecCCCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 119 IMMDTSYDMLKLCKDAQQDAH-NDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 119 ~~vD~s~~~l~~a~~~~~~~~-~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
+|+|+|++|++.|+++..... ....++.++++|.+.+|+++++||+|++.+++||++|+..+++++.|+||||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpG 74 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPG 74 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcC
Confidence 489999999999987654200 1124689999999999999999999999999999999999999999999997
No 91
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.33 E-value=3.5e-11 Score=100.08 Aligned_cols=76 Identities=17% Similarity=0.016 Sum_probs=61.8
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC-CCCCcceEEeCC
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL-KESSLDLAISCL 169 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~-~~~~fDlVis~~ 169 (191)
+..+|||+|||+|.++..++...+..+++++|+|+.+++.++++... ...++.++++|+....+ ..++||+|+||-
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~---~g~rV~fi~gDl~e~~l~~~~~FDLIVSNP 327 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAAD---LGARVEFAHGSWFDTDMPSEGKWDIIVSNP 327 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH---cCCcEEEEEcchhccccccCCCccEEEECC
Confidence 44689999999999999988776778999999999999999998764 22368899999754322 246799999975
No 92
>PRK14968 putative methyltransferase; Provisional
Probab=99.33 E-value=2.1e-11 Score=91.50 Aligned_cols=99 Identities=16% Similarity=0.094 Sum_probs=73.9
Q ss_pred cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL 169 (191)
Q Consensus 90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~ 169 (191)
.++.+|||+|||+|.++..++..+ .+++++|+|+.+++.++++..........+.++..|... ++.+.+||+|+++.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~ 98 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG--KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNP 98 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc--ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECC
Confidence 356789999999999999998875 899999999999999988775421111126777888554 23445899999986
Q ss_pred cccCcC---------------------ChHHHHHHHHhccCCC
Q 029554 170 GLHWTN---------------------DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 170 ~l~~~~---------------------d~~~~l~~i~r~Lkpg 191 (191)
.+.+.. .+..++.++.++||||
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~g 141 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPG 141 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCC
Confidence 543311 1356789999999986
No 93
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.32 E-value=2.2e-11 Score=99.61 Aligned_cols=113 Identities=13% Similarity=0.019 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCC
Q 029554 73 FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE 152 (191)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~ 152 (191)
+...++..++.... ..++.+|||+|||+|.++..++..+ .+++|+|+++.|+..+++++.. ....++.+..+|+
T Consensus 166 l~~~la~~~~~l~~--~~~g~~vLDp~cGtG~~lieaa~~~--~~v~g~Di~~~~~~~a~~nl~~--~g~~~i~~~~~D~ 239 (329)
T TIGR01177 166 MDPKLARAMVNLAR--VTEGDRVLDPFCGTGGFLIEAGLMG--AKVIGCDIDWKMVAGARINLEH--YGIEDFFVKRGDA 239 (329)
T ss_pred CCHHHHHHHHHHhC--CCCcCEEEECCCCCCHHHHHHHHhC--CeEEEEcCCHHHHHHHHHHHHH--hCCCCCeEEecch
Confidence 44455555554433 3467799999999999987776655 8999999999999999988765 2223378889999
Q ss_pred CCCCCCCCCcceEEeCCccc------C--cCC-hHHHHHHHHhccCCC
Q 029554 153 EFLPLKESSLDLAISCLGLH------W--TND-LPGAMIQVSIFLLPD 191 (191)
Q Consensus 153 ~~l~~~~~~fDlVis~~~l~------~--~~d-~~~~l~~i~r~Lkpg 191 (191)
..+++++++||+|+++--.. . ..+ ...++.++.++|+||
T Consensus 240 ~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~g 287 (329)
T TIGR01177 240 TKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSE 287 (329)
T ss_pred hcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCC
Confidence 98888788999999973211 1 111 467899999999986
No 94
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.32 E-value=3.6e-11 Score=96.42 Aligned_cols=97 Identities=18% Similarity=0.161 Sum_probs=73.8
Q ss_pred CeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC---
Q 029554 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL--- 169 (191)
Q Consensus 93 ~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~--- 169 (191)
.+|||+|||+|.++..++..++..+++++|+|+.+++.++++.... ....++.++.+|+.. ++++.+||+|++|-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~-~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKN-QLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc-CCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 6899999999999999998877789999999999999999887641 122348899999654 23445899999972
Q ss_pred ----------cccCcC------------ChHHHHHHHHhccCCC
Q 029554 170 ----------GLHWTN------------DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 170 ----------~l~~~~------------d~~~~l~~i~r~Lkpg 191 (191)
+++|-+ ....++.++.++|+||
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~g 237 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPN 237 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCC
Confidence 222221 2446788888899886
No 95
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.32 E-value=2.3e-11 Score=95.87 Aligned_cols=96 Identities=16% Similarity=0.172 Sum_probs=68.5
Q ss_pred HHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCC-CceeeEecCCCCCCCCCC
Q 029554 82 LDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN-IETCFVVGDEEFLPLKES 160 (191)
Q Consensus 82 ~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~-~~~~~~~~d~~~l~~~~~ 160 (191)
+..+.....++.+|||+|||+|.++..+...+ ..+|+++|+|+.+++.++++... +.. ..+.+..+ +.
T Consensus 110 l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g-~~~v~giDis~~~l~~A~~n~~~--~~~~~~~~~~~~--------~~ 178 (250)
T PRK00517 110 LEALEKLVLPGKTVLDVGCGSGILAIAAAKLG-AKKVLAVDIDPQAVEAARENAEL--NGVELNVYLPQG--------DL 178 (250)
T ss_pred HHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHH--cCCCceEEEccC--------CC
Confidence 33333323467899999999999998887765 34699999999999999988754 221 12222211 22
Q ss_pred CcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 161 SLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 161 ~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
+||+|++|...+ ....++.++.++||||
T Consensus 179 ~fD~Vvani~~~---~~~~l~~~~~~~Lkpg 206 (250)
T PRK00517 179 KADVIVANILAN---PLLELAPDLARLLKPG 206 (250)
T ss_pred CcCEEEEcCcHH---HHHHHHHHHHHhcCCC
Confidence 799999986543 2467889999999996
No 96
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.31 E-value=1.6e-11 Score=91.17 Aligned_cols=85 Identities=12% Similarity=0.094 Sum_probs=69.5
Q ss_pred HHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCC
Q 029554 80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKE 159 (191)
Q Consensus 80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 159 (191)
.+++.+. ..++.+|||+|||+|.++..+++++ .+++++|+++.+++.++++... ..++.++.+|+..+++++
T Consensus 4 ~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~~--~~v~~vE~~~~~~~~~~~~~~~----~~~v~ii~~D~~~~~~~~ 75 (169)
T smart00650 4 KIVRAAN--LRPGDTVLEIGPGKGALTEELLERA--ARVTAIEIDPRLAPRLREKFAA----ADNLTVIHGDALKFDLPK 75 (169)
T ss_pred HHHHhcC--CCCcCEEEEECCCccHHHHHHHhcC--CeEEEEECCHHHHHHHHHHhcc----CCCEEEEECchhcCCccc
Confidence 4444444 3456789999999999999999875 8999999999999999887642 346889999999888777
Q ss_pred CCcceEEeCCccc
Q 029554 160 SSLDLAISCLGLH 172 (191)
Q Consensus 160 ~~fDlVis~~~l~ 172 (191)
..||.|++|.-.+
T Consensus 76 ~~~d~vi~n~Py~ 88 (169)
T smart00650 76 LQPYKVVGNLPYN 88 (169)
T ss_pred cCCCEEEECCCcc
Confidence 7799999987655
No 97
>PRK04266 fibrillarin; Provisional
Probab=99.31 E-value=2.4e-11 Score=94.27 Aligned_cols=96 Identities=9% Similarity=0.017 Sum_probs=71.5
Q ss_pred ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC----CCCCCCCcce
Q 029554 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF----LPLKESSLDL 164 (191)
Q Consensus 89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~----l~~~~~~fDl 164 (191)
..++.+|||+|||+|.++..+++..+...|+++|+++.|++.+.+++.. ..++.++.+|... .++. .+||+
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~----~~nv~~i~~D~~~~~~~~~l~-~~~D~ 144 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE----RKNIIPILADARKPERYAHVV-EKVDV 144 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh----cCCcEEEECCCCCcchhhhcc-ccCCE
Confidence 3477899999999999999998875446899999999999988766543 2457888888753 1223 46999
Q ss_pred EEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 165 AISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 165 Vis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
|++.....| ....++.++.++||||
T Consensus 145 i~~d~~~p~--~~~~~L~~~~r~LKpG 169 (226)
T PRK04266 145 IYQDVAQPN--QAEIAIDNAEFFLKDG 169 (226)
T ss_pred EEECCCChh--HHHHHHHHHHHhcCCC
Confidence 996543211 1234689999999997
No 98
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.30 E-value=2.4e-11 Score=89.37 Aligned_cols=98 Identities=20% Similarity=0.085 Sum_probs=76.8
Q ss_pred CCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCC-CceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN-IETCFVVGDEEFLPLKESSLDLAISCLG 170 (191)
Q Consensus 92 ~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~-~~~~~~~~d~~~l~~~~~~fDlVis~~~ 170 (191)
..+|||+|||+|.+...|++.+-...++|+|.|+..++.|+..++. ... ..+.|.+.|+....+..++||+|.--..
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~--~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT 145 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAER--DGFSNEIRFQQLDITDPDFLSGQFDLVLDKGT 145 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHh--cCCCcceeEEEeeccCCcccccceeEEeecCc
Confidence 3489999999999999999876445699999999999999887765 233 3499999998877778899999987665
Q ss_pred ccCc---C-----ChHHHHHHHHhccCCC
Q 029554 171 LHWT---N-----DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 171 l~~~---~-----d~~~~l~~i~r~Lkpg 191 (191)
+.-+ + .+...+..+.+.|+||
T Consensus 146 ~DAisLs~d~~~~r~~~Y~d~v~~ll~~~ 174 (227)
T KOG1271|consen 146 LDAISLSPDGPVGRLVVYLDSVEKLLSPG 174 (227)
T ss_pred eeeeecCCCCcccceeeehhhHhhccCCC
Confidence 5443 1 2344677788888876
No 99
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.30 E-value=3.6e-12 Score=88.57 Aligned_cols=98 Identities=16% Similarity=0.140 Sum_probs=76.4
Q ss_pred CCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--CCCCCcceEEeCC
Q 029554 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LKESSLDLAISCL 169 (191)
Q Consensus 92 ~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~fDlVis~~ 169 (191)
+.+|||+|||+|.++..+.+.+ ..+++++|+++..++.++.++.. .....++.++++|..... +++++||+|++|-
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~np 78 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPR-NGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNP 78 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHH-CTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHH-ccCCceEEEEECchhhchhhccCceeEEEEECC
Confidence 3579999999999999998887 78999999999999999988865 123356899999976543 6778999999986
Q ss_pred cccCcC--------ChHHHHHHHHhccCCC
Q 029554 170 GLHWTN--------DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 170 ~l~~~~--------d~~~~l~~i~r~Lkpg 191 (191)
-..... ....+++++.++||||
T Consensus 79 P~~~~~~~~~~~~~~~~~~~~~~~~~L~~g 108 (117)
T PF13659_consen 79 PYGPRSGDKAALRRLYSRFLEAAARLLKPG 108 (117)
T ss_dssp STTSBTT----GGCHHHHHHHHHHHHEEEE
T ss_pred CCccccccchhhHHHHHHHHHHHHHHcCCC
Confidence 654321 2357899999999885
No 100
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.30 E-value=2.2e-11 Score=98.88 Aligned_cols=104 Identities=13% Similarity=0.078 Sum_probs=76.7
Q ss_pred HHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC
Q 029554 78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP 156 (191)
Q Consensus 78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~ 156 (191)
...+++.+. ..++.+|||+|||+|.++..+++..+ ...|+++|+++.+++.++++... ....++.++.+|.....
T Consensus 69 ~a~ll~~L~--i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~--~g~~nV~~i~gD~~~~~ 144 (322)
T PRK13943 69 MALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRR--LGIENVIFVCGDGYYGV 144 (322)
T ss_pred HHHHHHhcC--CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHH--cCCCcEEEEeCChhhcc
Confidence 334444443 34678999999999999999987653 24799999999999999988765 23456888888876554
Q ss_pred CCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 157 LKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 157 ~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
...++||+|++..++..++ ..+.+.|+||
T Consensus 145 ~~~~~fD~Ii~~~g~~~ip------~~~~~~Lkpg 173 (322)
T PRK13943 145 PEFAPYDVIFVTVGVDEVP------ETWFTQLKEG 173 (322)
T ss_pred cccCCccEEEECCchHHhH------HHHHHhcCCC
Confidence 4556899999987766442 3456677775
No 101
>PTZ00146 fibrillarin; Provisional
Probab=99.26 E-value=5.1e-11 Score=94.88 Aligned_cols=120 Identities=10% Similarity=0.074 Sum_probs=86.0
Q ss_pred hcCCCchHHHHHHHHHHHHHHhc-ccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCC
Q 029554 66 LTRPNDSFVDAVAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI 143 (191)
Q Consensus 66 ~y~~~~~~~~~~~~~l~~~l~~~-~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~ 143 (191)
.|+.++..+.-++..++.-+..+ ..++.+|||+|||+|.++..+++.. +...|+++|+|+.|++...+.... ..
T Consensus 106 eyR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~----r~ 181 (293)
T PTZ00146 106 EYRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK----RP 181 (293)
T ss_pred eeeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh----cC
Confidence 47888888888877776665544 3577799999999999999998864 346899999999866544443321 14
Q ss_pred ceeeEecCCCC---CCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 144 ETCFVVGDEEF---LPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 144 ~~~~~~~d~~~---l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
++.++..|+.. .....++||+|++... ..++...++.++.++||||
T Consensus 182 NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva--~pdq~~il~~na~r~LKpG 230 (293)
T PTZ00146 182 NIVPIIEDARYPQKYRMLVPMVDVIFADVA--QPDQARIVALNAQYFLKNG 230 (293)
T ss_pred CCEEEECCccChhhhhcccCCCCEEEEeCC--CcchHHHHHHHHHHhccCC
Confidence 57788888653 2223357999999875 2333445667899999996
No 102
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.25 E-value=1.8e-10 Score=92.36 Aligned_cols=76 Identities=14% Similarity=-0.009 Sum_probs=61.6
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC 168 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~ 168 (191)
+..+|||+|||+|.++..++..++..+++++|+|+.+++.++++.... +...++.++.+|+.. ++++++||+|++|
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~-~~~~~i~~~~~D~~~-~~~~~~fD~Iv~N 196 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERH-GLEDRVTLIQSDLFA-ALPGRKYDLIVSN 196 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc-CCCCcEEEEECchhh-ccCCCCccEEEEC
Confidence 456899999999999999998877789999999999999999987651 122468899999643 2245689999997
No 103
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.24 E-value=1.1e-10 Score=94.55 Aligned_cols=97 Identities=13% Similarity=0.015 Sum_probs=73.6
Q ss_pred CeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc--
Q 029554 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG-- 170 (191)
Q Consensus 93 ~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~-- 170 (191)
.+|||+|||+|.++..++..++..+++++|+|+.+++.++++.... +...++.++.+|+... +++++||+|++|--
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~-~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERH-GLEDRVTLIESDLFAA-LPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh-CCCCcEEEEECchhhh-CCCCCccEEEECCCCC
Confidence 6899999999999999998877789999999999999999987641 1224588999996432 23468999999721
Q ss_pred -----------ccCcCC------------hHHHHHHHHhccCCC
Q 029554 171 -----------LHWTND------------LPGAMIQVSIFLLPD 191 (191)
Q Consensus 171 -----------l~~~~d------------~~~~l~~i~r~Lkpg 191 (191)
++|-+. ...++.++.++|+||
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pg 256 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTED 256 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCC
Confidence 111111 246788888999986
No 104
>PRK00811 spermidine synthase; Provisional
Probab=99.24 E-value=1e-10 Score=93.74 Aligned_cols=101 Identities=17% Similarity=0.176 Sum_probs=78.1
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccC---CCCceeeEecCCCC-CCCCCCCcceEE
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHN---DNIETCFVVGDEEF-LPLKESSLDLAI 166 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~---~~~~~~~~~~d~~~-l~~~~~~fDlVi 166 (191)
.+.+||++|||+|..+..+.+..+..+|+++|+++.+++.|++.+..... ...++.++.+|... +...+++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 45689999999999999988765568999999999999999987754221 24578899999653 333467899999
Q ss_pred eCCcccCcCC----hHHHHHHHHhccCCC
Q 029554 167 SCLGLHWTND----LPGAMIQVSIFLLPD 191 (191)
Q Consensus 167 s~~~l~~~~d----~~~~l~~i~r~Lkpg 191 (191)
+...-.+... ...+++.+.++|+||
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~g 184 (283)
T PRK00811 156 VDSTDPVGPAEGLFTKEFYENCKRALKED 184 (283)
T ss_pred ECCCCCCCchhhhhHHHHHHHHHHhcCCC
Confidence 9765544322 256789999999986
No 105
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.24 E-value=1.3e-10 Score=89.72 Aligned_cols=99 Identities=10% Similarity=-0.120 Sum_probs=79.7
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhh----------ccCCCCceeeEecCCCCCCCC--
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD----------AHNDNIETCFVVGDEEFLPLK-- 158 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~----------~~~~~~~~~~~~~d~~~l~~~-- 158 (191)
++.+||..|||.|....+|++.| .+|+|+|+|+..++.+.+.... .......+.+.++|+-.++..
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G--~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKG--VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCC--CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 46799999999999999999988 8899999999999998663210 001245789999998887632
Q ss_pred -CCCcceEEeCCcccCcC--ChHHHHHHHHhccCCC
Q 029554 159 -ESSLDLAISCLGLHWTN--DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 159 -~~~fDlVis~~~l~~~~--d~~~~l~~i~r~Lkpg 191 (191)
.+.||+|+-..++++++ ......+.+.++|+||
T Consensus 121 ~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pg 156 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNN 156 (226)
T ss_pred ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCC
Confidence 26899999999999985 3467899999999996
No 106
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.23 E-value=8e-11 Score=91.58 Aligned_cols=109 Identities=18% Similarity=0.122 Sum_probs=82.3
Q ss_pred HHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--CC
Q 029554 81 LLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LK 158 (191)
Q Consensus 81 l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--~~ 158 (191)
|+....... ...+|||+|||+|.++..++++.+..++++||+.+.+.+.|++.... +....++++++.|+..+. ..
T Consensus 35 LL~~~~~~~-~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~l-n~l~~ri~v~~~Di~~~~~~~~ 112 (248)
T COG4123 35 LLAAFAPVP-KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVAL-NPLEERIQVIEADIKEFLKALV 112 (248)
T ss_pred HHHhhcccc-cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHh-CcchhceeEehhhHHHhhhccc
Confidence 343444323 37799999999999999999997779999999999999999988765 334567999999988653 34
Q ss_pred CCCcceEEeCCcccC----------------c--CChHHHHHHHHhccCCC
Q 029554 159 ESSLDLAISCLGLHW----------------T--NDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 159 ~~~fDlVis~~~l~~----------------~--~d~~~~l~~i~r~Lkpg 191 (191)
..+||+|+||=-..- . -+.+..++...++||||
T Consensus 113 ~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~ 163 (248)
T COG4123 113 FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPG 163 (248)
T ss_pred ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCC
Confidence 457999999732211 1 24567777788888875
No 107
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.7e-10 Score=87.38 Aligned_cols=95 Identities=14% Similarity=0.094 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC
Q 029554 74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE 153 (191)
Q Consensus 74 ~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~ 153 (191)
...+..++++.|. ..++.+|||||||+|+.+..|++.. .+|+.+|..+...+.|++++.. -...++.+.++|-.
T Consensus 57 ~P~~vA~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~~--lg~~nV~v~~gDG~ 130 (209)
T COG2518 57 APHMVARMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLET--LGYENVTVRHGDGS 130 (209)
T ss_pred CcHHHHHHHHHhC--CCCCCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHHH--cCCCceEEEECCcc
Confidence 3445667777777 6688999999999999999999987 6999999999999999999876 34456999999955
Q ss_pred -CCCCCCCCcceEEeCCcccCcC
Q 029554 154 -FLPLKESSLDLAISCLGLHWTN 175 (191)
Q Consensus 154 -~l~~~~~~fDlVis~~~l~~~~ 175 (191)
.++ +.++||.|+.+.+...++
T Consensus 131 ~G~~-~~aPyD~I~Vtaaa~~vP 152 (209)
T COG2518 131 KGWP-EEAPYDRIIVTAAAPEVP 152 (209)
T ss_pred cCCC-CCCCcCEEEEeeccCCCC
Confidence 454 568999999998877664
No 108
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.22 E-value=1.5e-10 Score=92.16 Aligned_cols=77 Identities=21% Similarity=0.141 Sum_probs=62.5
Q ss_pred cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL 169 (191)
Q Consensus 90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~ 169 (191)
.+..+|||+|||+|.++..++...+..+++++|+|+.+++.++++... ....++.++.+|.... +++++||+|++|-
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~--~~~~~i~~~~~d~~~~-~~~~~fD~Iv~np 183 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKH--GLGARVEFLQGDWFEP-LPGGRFDLIVSNP 183 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh--CCCCcEEEEEccccCc-CCCCceeEEEECC
Confidence 356789999999999999999887778999999999999999988752 2344688898886432 2357899999973
No 109
>PHA03411 putative methyltransferase; Provisional
Probab=99.22 E-value=1.8e-10 Score=90.97 Aligned_cols=77 Identities=14% Similarity=0.121 Sum_probs=63.0
Q ss_pred cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL 169 (191)
Q Consensus 90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~ 169 (191)
....+|||+|||+|.++..+..+.+..+++++|+|+.|++.++++.. ++.++++|+..+. .+.+||+|++|-
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~-------~v~~v~~D~~e~~-~~~kFDlIIsNP 134 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP-------EAEWITSDVFEFE-SNEKFDVVISNP 134 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-------CCEEEECchhhhc-ccCCCcEEEEcC
Confidence 34578999999999999888776545799999999999999987642 3788999987765 346899999998
Q ss_pred cccCc
Q 029554 170 GLHWT 174 (191)
Q Consensus 170 ~l~~~ 174 (191)
.+++.
T Consensus 135 PF~~l 139 (279)
T PHA03411 135 PFGKI 139 (279)
T ss_pred Ccccc
Confidence 88775
No 110
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.21 E-value=4.6e-10 Score=83.35 Aligned_cols=110 Identities=15% Similarity=0.097 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCC
Q 029554 73 FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE 152 (191)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~ 152 (191)
-++++..-.+..|. ..++.+++|||||+|..+..++..+|..+++++|-++++++..+++.... ..+++.++.++.
T Consensus 18 TK~EIRal~ls~L~--~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~f--g~~n~~vv~g~A 93 (187)
T COG2242 18 TKEEIRALTLSKLR--PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARF--GVDNLEVVEGDA 93 (187)
T ss_pred cHHHHHHHHHHhhC--CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHh--CCCcEEEEeccc
Confidence 45566555566666 67889999999999999999997788899999999999999999888763 477899999996
Q ss_pred C-CCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 153 E-FLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 153 ~-~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
- .++-. .++|.|+...+ . ..+.++..+...||||
T Consensus 94 p~~L~~~-~~~daiFIGGg-~---~i~~ile~~~~~l~~g 128 (187)
T COG2242 94 PEALPDL-PSPDAIFIGGG-G---NIEEILEAAWERLKPG 128 (187)
T ss_pred hHhhcCC-CCCCEEEECCC-C---CHHHHHHHHHHHcCcC
Confidence 4 44422 27999999988 3 5688888888888886
No 111
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=1.3e-10 Score=92.78 Aligned_cols=95 Identities=15% Similarity=0.066 Sum_probs=69.6
Q ss_pred cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCc-eeeEecCCCCCCCCCCCcceEEeC
Q 029554 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIE-TCFVVGDEEFLPLKESSLDLAISC 168 (191)
Q Consensus 90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~-~~~~~~d~~~l~~~~~~fDlVis~ 168 (191)
.++.+|||+|||+|.++...++.| ..+++|+|++|..++.++++... |.... ......+....+ ..++||+||+|
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~--N~v~~~~~~~~~~~~~~~-~~~~~DvIVAN 236 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARL--NGVELLVQAKGFLLLEVP-ENGPFDVIVAN 236 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHH--cCCchhhhcccccchhhc-ccCcccEEEeh
Confidence 478899999999999999998876 46799999999999999998865 33222 222222222222 33689999998
Q ss_pred CcccCcCChHHHHHHHHhccCCC
Q 029554 169 LGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 169 ~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
- |-.+ +..+..++.+.||||
T Consensus 237 I-LA~v--l~~La~~~~~~lkpg 256 (300)
T COG2264 237 I-LAEV--LVELAPDIKRLLKPG 256 (300)
T ss_pred h-hHHH--HHHHHHHHHHHcCCC
Confidence 6 3322 357788889999986
No 112
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.20 E-value=7.6e-11 Score=90.29 Aligned_cols=98 Identities=15% Similarity=0.114 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecC
Q 029554 73 FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGD 151 (191)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d 151 (191)
....+..++++.+. .+++.+|||||||+|+.+..|+.. ++...|+++|..+.+.+.|++++.. ....++.++.+|
T Consensus 56 s~P~~~a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~--~~~~nv~~~~gd 131 (209)
T PF01135_consen 56 SAPSMVARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLAR--LGIDNVEVVVGD 131 (209)
T ss_dssp --HHHHHHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHH--HTTHSEEEEES-
T ss_pred hHHHHHHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHH--hccCceeEEEcc
Confidence 44556667777776 568899999999999999999876 3445799999999999999999875 234478999999
Q ss_pred CCCCCCCCCCcceEEeCCcccCc
Q 029554 152 EEFLPLKESSLDLAISCLGLHWT 174 (191)
Q Consensus 152 ~~~l~~~~~~fDlVis~~~l~~~ 174 (191)
........++||.|+++.+...+
T Consensus 132 g~~g~~~~apfD~I~v~~a~~~i 154 (209)
T PF01135_consen 132 GSEGWPEEAPFDRIIVTAAVPEI 154 (209)
T ss_dssp GGGTTGGG-SEEEEEESSBBSS-
T ss_pred hhhccccCCCcCEEEEeeccchH
Confidence 65433345789999999887644
No 113
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.19 E-value=4.7e-11 Score=97.35 Aligned_cols=100 Identities=17% Similarity=0.191 Sum_probs=70.1
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCC--------CCceeeEecCCCC------CC
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHND--------NIETCFVVGDEEF------LP 156 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~--------~~~~~~~~~d~~~------l~ 156 (191)
++.+|||+|||-|..+..+... ....++|+|+|...+++|+++....... .-...++.+|.-. ++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 6779999999999888888664 4689999999999999999998321111 1245667777442 22
Q ss_pred CCCCCcceEEeCCcccCc-CC---hHHHHHHHHhccCCC
Q 029554 157 LKESSLDLAISCLGLHWT-ND---LPGAMIQVSIFLLPD 191 (191)
Q Consensus 157 ~~~~~fDlVis~~~l~~~-~d---~~~~l~~i~r~Lkpg 191 (191)
.....||+|-|.+++||. .+ ...+|.++.+.|+||
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~G 179 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPG 179 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Confidence 233599999999999986 32 335899999999986
No 114
>PRK04457 spermidine synthase; Provisional
Probab=99.19 E-value=2.3e-10 Score=90.74 Aligned_cols=100 Identities=7% Similarity=-0.070 Sum_probs=76.0
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CCCCCCCcceEEeCC
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LPLKESSLDLAISCL 169 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~~~~~~fDlVis~~ 169 (191)
.+.+|||||||+|.++..+....|..+++++|+++.+++.|++.+.. .....++.++.+|... +....++||+|++..
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~-~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFEL-PENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCC-CCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 45689999999999999998888888999999999999999987643 1123578899999542 332346899999863
Q ss_pred cc-cCcC---ChHHHHHHHHhccCCC
Q 029554 170 GL-HWTN---DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 170 ~l-~~~~---d~~~~l~~i~r~Lkpg 191 (191)
.- ...+ ....+++++.++|+||
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pg 170 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSD 170 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCC
Confidence 11 1111 2368999999999996
No 115
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.18 E-value=2.5e-10 Score=96.47 Aligned_cols=102 Identities=11% Similarity=-0.028 Sum_probs=75.2
Q ss_pred ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC--CCCCcceEE
Q 029554 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL--KESSLDLAI 166 (191)
Q Consensus 89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~--~~~~fDlVi 166 (191)
..++.+|||+|||+|..+..++...+..+++++|+++.+++.++++....+- ...+.+..+|....+. ++++||.|+
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~-~~~v~~~~~d~~~~~~~~~~~~fD~Vl 314 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL-TIKAETKDGDGRGPSQWAENEQFDRIL 314 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeccccccccccccccccCEEE
Confidence 4577899999999999999998765557999999999999999998875221 1233445566554433 457899999
Q ss_pred eC------CcccCcCC----------------hHHHHHHHHhccCCC
Q 029554 167 SC------LGLHWTND----------------LPGAMIQVSIFLLPD 191 (191)
Q Consensus 167 s~------~~l~~~~d----------------~~~~l~~i~r~Lkpg 191 (191)
+. .++++.++ ...++.++.++||||
T Consensus 315 lDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkpg 361 (426)
T TIGR00563 315 LDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTG 361 (426)
T ss_pred EcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 53 23554444 356899999999997
No 116
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.17 E-value=3.8e-10 Score=95.42 Aligned_cols=100 Identities=11% Similarity=0.115 Sum_probs=75.7
Q ss_pred ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--CCCCCcceEE
Q 029554 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LKESSLDLAI 166 (191)
Q Consensus 89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~fDlVi 166 (191)
..++.+|||+|||+|..+..++...+..+|+++|+|+.+++.++++.... ...+.++++|...++ +++++||.|+
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~---g~~~~~~~~D~~~~~~~~~~~~fD~Vl 318 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL---GLKATVIVGDARDPAQWWDGQPFDRIL 318 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc---CCCeEEEEcCcccchhhcccCCCCEEE
Confidence 45778999999999999999988765579999999999999999988652 223678888987653 3457899999
Q ss_pred eCCc------c------cCcCC----------hHHHHHHHHhccCCC
Q 029554 167 SCLG------L------HWTND----------LPGAMIQVSIFLLPD 191 (191)
Q Consensus 167 s~~~------l------~~~~d----------~~~~l~~i~r~Lkpg 191 (191)
++.- + .|... ...++.++.++||||
T Consensus 319 ~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpG 365 (427)
T PRK10901 319 LDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPG 365 (427)
T ss_pred ECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5431 1 12211 236789999999997
No 117
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.16 E-value=1.1e-10 Score=93.20 Aligned_cols=88 Identities=16% Similarity=0.183 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC
Q 029554 74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE 153 (191)
Q Consensus 74 ~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~ 153 (191)
...+...+++.+. ..++.+|||+|||+|.++..+++.+ .+|+++|+++.|++.++++.. ..++.++++|+.
T Consensus 27 ~~~i~~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~-----~~~v~~i~~D~~ 97 (272)
T PRK00274 27 DENILDKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFA-----EDNLTIIEGDAL 97 (272)
T ss_pred CHHHHHHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhc-----cCceEEEEChhh
Confidence 3345566666554 3467799999999999999999987 599999999999999987652 146899999988
Q ss_pred CCCCCCCCcceEEeCCc
Q 029554 154 FLPLKESSLDLAISCLG 170 (191)
Q Consensus 154 ~l~~~~~~fDlVis~~~ 170 (191)
.+++++-.+|.||+|.-
T Consensus 98 ~~~~~~~~~~~vv~NlP 114 (272)
T PRK00274 98 KVDLSELQPLKVVANLP 114 (272)
T ss_pred cCCHHHcCcceEEEeCC
Confidence 88765322588998854
No 118
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.15 E-value=3.9e-10 Score=85.11 Aligned_cols=89 Identities=19% Similarity=0.147 Sum_probs=65.2
Q ss_pred cCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--------CCCC
Q 029554 90 KTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--------LKES 160 (191)
Q Consensus 90 ~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--------~~~~ 160 (191)
.++.+|||+|||+|.++..+.... +..+++++|+|+.+ .. .++.+++.|+...+ ++++
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~-------~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PI-------ENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cC-------CCceEEEeeCCChhHHHHHHHHhCCC
Confidence 467899999999999999887765 34689999999865 11 12667777866532 3566
Q ss_pred CcceEEeCCccc----CcC-------ChHHHHHHHHhccCCC
Q 029554 161 SLDLAISCLGLH----WTN-------DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 161 ~fDlVis~~~l~----~~~-------d~~~~l~~i~r~Lkpg 191 (191)
+||+|+++.+.+ |.. +...++.++.++|+||
T Consensus 98 ~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkpg 139 (188)
T TIGR00438 98 KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPK 139 (188)
T ss_pred CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCC
Confidence 899999976432 211 1367899999999986
No 119
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.15 E-value=4.5e-10 Score=95.15 Aligned_cols=101 Identities=14% Similarity=0.010 Sum_probs=78.4
Q ss_pred ccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----CCCCCcc
Q 029554 89 RKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----LKESSLD 163 (191)
Q Consensus 89 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----~~~~~fD 163 (191)
..++.+|||+|||+|..+..++... +..+|+++|+++.+++.++++... ....++.+++.|...++ +..++||
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r--~g~~~v~~~~~D~~~~~~~~~~~~~~fD 327 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQR--LGLKSIKILAADSRNLLELKPQWRGYFD 327 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHH--cCCCeEEEEeCChhhcccccccccccCC
Confidence 4567899999999999999887753 346899999999999999998865 23346888999987664 3457899
Q ss_pred eEEeC------CcccCcCC----------------hHHHHHHHHhccCCC
Q 029554 164 LAISC------LGLHWTND----------------LPGAMIQVSIFLLPD 191 (191)
Q Consensus 164 lVis~------~~l~~~~d----------------~~~~l~~i~r~Lkpg 191 (191)
.|++. .++++.+| ...++.++.++||||
T Consensus 328 ~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpg 377 (434)
T PRK14901 328 RILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPG 377 (434)
T ss_pred EEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99973 24444433 356799999999996
No 120
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.15 E-value=3.4e-10 Score=89.62 Aligned_cols=90 Identities=17% Similarity=0.197 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC
Q 029554 74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE 153 (191)
Q Consensus 74 ~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~ 153 (191)
...+.+.+++.+. ..++.+|||+|||+|.++..+.+.+ .+++++|+++.|++.++++... ..++.++++|+.
T Consensus 14 d~~~~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~----~~~v~ii~~D~~ 85 (258)
T PRK14896 14 DDRVVDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIA----AGNVEIIEGDAL 85 (258)
T ss_pred CHHHHHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhcc----CCCEEEEEeccc
Confidence 3445666666554 3467899999999999999999886 7899999999999999887632 346899999998
Q ss_pred CCCCCCCCcceEEeCCcccC
Q 029554 154 FLPLKESSLDLAISCLGLHW 173 (191)
Q Consensus 154 ~l~~~~~~fDlVis~~~l~~ 173 (191)
.++++ .||.|++|.-.+.
T Consensus 86 ~~~~~--~~d~Vv~NlPy~i 103 (258)
T PRK14896 86 KVDLP--EFNKVVSNLPYQI 103 (258)
T ss_pred cCCch--hceEEEEcCCccc
Confidence 87765 4899999977553
No 121
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.14 E-value=1.8e-10 Score=91.70 Aligned_cols=102 Identities=20% Similarity=0.225 Sum_probs=79.5
Q ss_pred ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCC----CceeeEecCCC------CCCCC
Q 029554 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN----IETCFVVGDEE------FLPLK 158 (191)
Q Consensus 89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~----~~~~~~~~d~~------~l~~~ 158 (191)
..+...++++|||-|..+..+...+ +.+++|+||++..+++|+++.....+.. -.+.|+.+|.. .++++
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~ 193 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFK 193 (389)
T ss_pred hccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCC
Confidence 3467789999999999988887654 6899999999999999999886422222 24677888743 24556
Q ss_pred CCCcceEEeCCcccCc----CChHHHHHHHHhccCCC
Q 029554 159 ESSLDLAISCLGLHWT----NDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 159 ~~~fDlVis~~~l~~~----~d~~~~l~~i~r~Lkpg 191 (191)
+.+||+|-|.+++||. .....+|.++.+.|+||
T Consensus 194 dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpG 230 (389)
T KOG1975|consen 194 DPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPG 230 (389)
T ss_pred CCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCC
Confidence 6669999999999985 23456899999999997
No 122
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.13 E-value=3.3e-10 Score=90.91 Aligned_cols=101 Identities=19% Similarity=0.153 Sum_probs=67.4
Q ss_pred HHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCC
Q 029554 82 LDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESS 161 (191)
Q Consensus 82 ~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 161 (191)
+..+.....++.+|||+|||+|.++...++.| ..+|+++|+++..++.++++... |.... .+........ ..++
T Consensus 152 l~~l~~~~~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~--N~~~~-~~~v~~~~~~--~~~~ 225 (295)
T PF06325_consen 152 LELLEKYVKPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAEL--NGVED-RIEVSLSEDL--VEGK 225 (295)
T ss_dssp HHHHHHHSSTTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHH--TT-TT-CEEESCTSCT--CCS-
T ss_pred HHHHHHhccCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHH--cCCCe-eEEEEEeccc--cccc
Confidence 33333334577899999999999999888876 46899999999999999998875 33222 2222222222 3488
Q ss_pred cceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 162 LDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 162 fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
||+|++|-... -+...+..+.++|+||
T Consensus 226 ~dlvvANI~~~---vL~~l~~~~~~~l~~~ 252 (295)
T PF06325_consen 226 FDLVVANILAD---VLLELAPDIASLLKPG 252 (295)
T ss_dssp EEEEEEES-HH---HHHHHHHHCHHHEEEE
T ss_pred CCEEEECCCHH---HHHHHHHHHHHhhCCC
Confidence 99999986544 2345666677777764
No 123
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.12 E-value=2.9e-10 Score=87.15 Aligned_cols=98 Identities=19% Similarity=0.124 Sum_probs=77.9
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCC--ceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC----CCCCCCCCcce
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGI--EKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE----FLPLKESSLDL 164 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~----~l~~~~~~fDl 164 (191)
+..+|||+|||.|.....+.+..+. -.++++|.|+..++..+++... ...++...+.|+. .-+.+.+++|+
T Consensus 71 ~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~---~e~~~~afv~Dlt~~~~~~~~~~~svD~ 147 (264)
T KOG2361|consen 71 SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGY---DESRVEAFVWDLTSPSLKEPPEEGSVDI 147 (264)
T ss_pred ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhcccc---chhhhcccceeccchhccCCCCcCccce
Confidence 3347999999999999988877655 7899999999999999876543 3345555566644 23567899999
Q ss_pred EEeCCcccCcC--ChHHHHHHHHhccCCC
Q 029554 165 AISCLGLHWTN--DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 165 Vis~~~l~~~~--d~~~~l~~i~r~Lkpg 191 (191)
|++.++|.-+. ....++.++.++||||
T Consensus 148 it~IFvLSAi~pek~~~a~~nl~~llKPG 176 (264)
T KOG2361|consen 148 ITLIFVLSAIHPEKMQSVIKNLRTLLKPG 176 (264)
T ss_pred EEEEEEEeccChHHHHHHHHHHHHHhCCC
Confidence 99999988763 4678999999999997
No 124
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.10 E-value=9.7e-10 Score=87.57 Aligned_cols=101 Identities=19% Similarity=0.144 Sum_probs=74.1
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccC--CCCceeeEecCCC-CCCCCCCCcceEEe
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHN--DNIETCFVVGDEE-FLPLKESSLDLAIS 167 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~--~~~~~~~~~~d~~-~l~~~~~~fDlVis 167 (191)
.+.+||++|||+|..+..+.+..+..+++++|+++.+++.+++.+..+.. ...++.++..|.. .+...+++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 34599999999999998887776568999999999999999987654211 1245677777743 22223478999999
Q ss_pred CCcccCcC--C--hHHHHHHHHhccCCC
Q 029554 168 CLGLHWTN--D--LPGAMIQVSIFLLPD 191 (191)
Q Consensus 168 ~~~l~~~~--d--~~~~l~~i~r~Lkpg 191 (191)
........ + ...+++.+.++|+||
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pg 179 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNED 179 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCC
Confidence 76533322 2 357889999999986
No 125
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.07 E-value=8.3e-10 Score=89.84 Aligned_cols=74 Identities=12% Similarity=0.030 Sum_probs=61.4
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC-CCCCcceEEeC
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL-KESSLDLAISC 168 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~-~~~~fDlVis~ 168 (191)
++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.++++... +...++.++++|+..+.. ..++||+|+++
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~--~~V~gvD~s~~av~~A~~n~~~--~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG--MQLTGIEISAEAIACAKQSAAE--LGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHH--cCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 45789999999999999999876 8999999999999999988765 333568999999875432 23579999987
No 126
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=1.2e-09 Score=87.40 Aligned_cols=70 Identities=29% Similarity=0.308 Sum_probs=57.5
Q ss_pred eEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecC-CCCCCCCCCCcceEEeC
Q 029554 94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGD-EEFLPLKESSLDLAISC 168 (191)
Q Consensus 94 ~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d-~~~l~~~~~~fDlVis~ 168 (191)
+|||+|||+|.++..++..++..+|+++|+|+..++.|++++.. +...++.++.+| ++.++ ++||+||||
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~--~~l~~~~~~~~dlf~~~~---~~fDlIVsN 183 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAER--NGLVRVLVVQSDLFEPLR---GKFDLIVSN 183 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHH--cCCccEEEEeeecccccC---CceeEEEeC
Confidence 79999999999999999999888999999999999999998875 222455666665 23332 489999998
No 127
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.07 E-value=3.1e-09 Score=83.80 Aligned_cols=73 Identities=16% Similarity=0.034 Sum_probs=57.5
Q ss_pred CCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CCC-CCCCcceEEeCC
Q 029554 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LPL-KESSLDLAISCL 169 (191)
Q Consensus 92 ~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~~-~~~~fDlVis~~ 169 (191)
..+|||+|||+|.++..++...+..+++++|+|+.+++.++++... +. ..++++|+.. ++- ..++||+|++|-
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~--~~---~~~~~~D~~~~l~~~~~~~fDlVv~NP 161 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLAD--AG---GTVHEGDLYDALPTALRGRVDILAANA 161 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH--cC---CEEEEeechhhcchhcCCCEeEEEECC
Confidence 3489999999999999998776667999999999999999988754 22 4678888653 321 135799999984
No 128
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.07 E-value=1.3e-09 Score=93.96 Aligned_cols=76 Identities=16% Similarity=0.100 Sum_probs=60.2
Q ss_pred CCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL 169 (191)
Q Consensus 92 ~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~ 169 (191)
..+|||+|||+|.++..++...+..+++++|+|+.+++.++++.... +...++.++.+|+.. +++.++||+|+||-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~-~l~~~v~~~~~D~~~-~~~~~~fDlIvsNP 214 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKY-EVTDRIQIIHSNWFE-NIEKQKFDFIVSNP 214 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHc-CCccceeeeecchhh-hCcCCCccEEEECC
Confidence 45899999999999999887777789999999999999999887541 223468888888543 12356899999963
No 129
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.07 E-value=9.9e-10 Score=93.31 Aligned_cols=76 Identities=13% Similarity=0.062 Sum_probs=62.2
Q ss_pred cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC----CCCCCCCcceE
Q 029554 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF----LPLKESSLDLA 165 (191)
Q Consensus 90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~----l~~~~~~fDlV 165 (191)
.++.+|||+|||+|.++..++..+ .+|+++|+|+.|++.|+++... +...++.+.++|+.. .++.+++||+|
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~--~~~~~v~~~~~d~~~~l~~~~~~~~~fD~V 371 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARR--NGLDNVTFYHANLEEDFTDQPWALGGFDKV 371 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHH--cCCCceEEEEeChHHhhhhhhhhcCCCCEE
Confidence 456799999999999999999876 7999999999999999988764 334568999999753 23445689999
Q ss_pred EeCC
Q 029554 166 ISCL 169 (191)
Q Consensus 166 is~~ 169 (191)
+++-
T Consensus 372 i~dP 375 (443)
T PRK13168 372 LLDP 375 (443)
T ss_pred EECc
Confidence 9863
No 130
>PHA03412 putative methyltransferase; Provisional
Probab=99.05 E-value=2.3e-09 Score=82.90 Aligned_cols=93 Identities=13% Similarity=0.076 Sum_probs=69.4
Q ss_pred CCCeEEEEcCCccHHHHHHhhcC---CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEe
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRG---GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAIS 167 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~---~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis 167 (191)
...+|||+|||+|.++..++... +..+++++|+++.+++.|++... ++.+...|+...++ +++||+||+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-------~~~~~~~D~~~~~~-~~~FDlIIs 120 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-------EATWINADALTTEF-DTLFDMAIS 120 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-------CCEEEEcchhcccc-cCCccEEEE
Confidence 36799999999999999887642 24689999999999999987643 27788899876654 468999999
Q ss_pred CCcccCc--C---------C-hHHHHHHHHhccCCC
Q 029554 168 CLGLHWT--N---------D-LPGAMIQVSIFLLPD 191 (191)
Q Consensus 168 ~~~l~~~--~---------d-~~~~l~~i~r~Lkpg 191 (191)
|=-..-. . + ...++..+.++++||
T Consensus 121 NPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G 156 (241)
T PHA03412 121 NPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQG 156 (241)
T ss_pred CCCCCCccccccCCcccccHHHHHHHHHHHHHcCCC
Confidence 8432211 1 1 234778888877776
No 131
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.05 E-value=8.1e-10 Score=86.00 Aligned_cols=87 Identities=15% Similarity=-0.008 Sum_probs=72.5
Q ss_pred CCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcc
Q 029554 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGL 171 (191)
Q Consensus 92 ~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l 171 (191)
..++||||+|.|..+..++..+ .+|+++|.|+.|..+.+++. .. +.+...+.-.+.+||+|.|.++|
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr~rL~~kg---------~~--vl~~~~w~~~~~~fDvIscLNvL 161 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMRWRLSKKG---------FT--VLDIDDWQQTDFKFDVISCLNVL 161 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHHHHHHhCC---------Ce--EEehhhhhccCCceEEEeehhhh
Confidence 4579999999999999999987 89999999999988887643 22 23333343345689999999999
Q ss_pred cCcCChHHHHHHHHhccCCC
Q 029554 172 HWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 172 ~~~~d~~~~l~~i~r~Lkpg 191 (191)
....+|...|++|++.|+|+
T Consensus 162 DRc~~P~~LL~~i~~~l~p~ 181 (265)
T PF05219_consen 162 DRCDRPLTLLRDIRRALKPN 181 (265)
T ss_pred hccCCHHHHHHHHHHHhCCC
Confidence 99999999999999999985
No 132
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.04 E-value=1.4e-09 Score=85.89 Aligned_cols=88 Identities=15% Similarity=0.164 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC
Q 029554 75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF 154 (191)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~ 154 (191)
..+...+++.+. ..++.+|||+|||+|.++..+.+.+ .+|+++|+++.+++.++++.. ...++.++.+|+..
T Consensus 15 ~~i~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~----~~~~v~v~~~D~~~ 86 (253)
T TIGR00755 15 ESVIQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLS----LYERLEVIEGDALK 86 (253)
T ss_pred HHHHHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhC----cCCcEEEEECchhc
Confidence 345556666554 3467799999999999999999988 679999999999999987763 24568899999888
Q ss_pred CCCCCCCcc---eEEeCCccc
Q 029554 155 LPLKESSLD---LAISCLGLH 172 (191)
Q Consensus 155 l~~~~~~fD---lVis~~~l~ 172 (191)
++++ .|| +|++|.-.+
T Consensus 87 ~~~~--~~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 87 VDLP--DFPKQLKVVSNLPYN 105 (253)
T ss_pred CChh--HcCCcceEEEcCChh
Confidence 7764 466 888887655
No 133
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.04 E-value=1.3e-09 Score=87.67 Aligned_cols=93 Identities=15% Similarity=0.166 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC
Q 029554 75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF 154 (191)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~ 154 (191)
..+...+++.+. ..++.+|||||||+|.++..+.+.+ .+|+++|+++.|++.+++++... ....++.++.+|+..
T Consensus 22 ~~i~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~-~~~~~v~ii~~Dal~ 96 (294)
T PTZ00338 22 PLVLDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNS-PLASKLEVIEGDALK 96 (294)
T ss_pred HHHHHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhc-CCCCcEEEEECCHhh
Confidence 345556665554 3467899999999999999998876 78999999999999999887531 124578999999877
Q ss_pred CCCCCCCcceEEeCCcccCc
Q 029554 155 LPLKESSLDLAISCLGLHWT 174 (191)
Q Consensus 155 l~~~~~~fDlVis~~~l~~~ 174 (191)
.++ ..||.|++|.-.+..
T Consensus 97 ~~~--~~~d~VvaNlPY~Is 114 (294)
T PTZ00338 97 TEF--PYFDVCVANVPYQIS 114 (294)
T ss_pred hcc--cccCEEEecCCcccC
Confidence 654 368999998655533
No 134
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.04 E-value=2.3e-09 Score=91.10 Aligned_cols=100 Identities=13% Similarity=0.021 Sum_probs=74.9
Q ss_pred ccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--CCCCCcceE
Q 029554 89 RKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LKESSLDLA 165 (191)
Q Consensus 89 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~fDlV 165 (191)
..++.+|||+|||+|..+..++... +..+++++|+++.+++.+++++.. ....++.++++|...++ ++ ++||+|
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~--~g~~~v~~~~~D~~~~~~~~~-~~fD~V 324 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKR--LGLTNIETKALDARKVHEKFA-EKFDKI 324 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH--cCCCeEEEEeCCcccccchhc-ccCCEE
Confidence 3467799999999999999888753 457999999999999999988865 23345888999977653 33 689999
Q ss_pred EeCCc------ccCcCC----------------hHHHHHHHHhccCCC
Q 029554 166 ISCLG------LHWTND----------------LPGAMIQVSIFLLPD 191 (191)
Q Consensus 166 is~~~------l~~~~d----------------~~~~l~~i~r~Lkpg 191 (191)
+++.- +.+.++ ...++.++.++||||
T Consensus 325 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG 372 (444)
T PRK14902 325 LVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKG 372 (444)
T ss_pred EEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 98532 111111 135788899999997
No 135
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.03 E-value=1.7e-09 Score=91.42 Aligned_cols=101 Identities=12% Similarity=0.022 Sum_probs=75.5
Q ss_pred ccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-CCCCCcceEE
Q 029554 89 RKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-LKESSLDLAI 166 (191)
Q Consensus 89 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-~~~~~fDlVi 166 (191)
..++.+|||+|||+|..+..++... +..+|+++|+|+.+++.+++++... ...++.+.+.|...++ +..++||.|+
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~--g~~~v~~~~~Da~~l~~~~~~~fD~Vl 312 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRL--KLSSIEIKIADAERLTEYVQDTFDRIL 312 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHc--CCCeEEEEECchhhhhhhhhccCCEEE
Confidence 4577899999999999998887653 3479999999999999999988752 2335788889977665 4457899999
Q ss_pred eCC---cccCc---CC----------------hHHHHHHHHhccCCC
Q 029554 167 SCL---GLHWT---ND----------------LPGAMIQVSIFLLPD 191 (191)
Q Consensus 167 s~~---~l~~~---~d----------------~~~~l~~i~r~Lkpg 191 (191)
+.. ++..+ ++ ....+.++.++||||
T Consensus 313 ~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG 359 (431)
T PRK14903 313 VDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKG 359 (431)
T ss_pred ECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 632 22221 11 245688899999986
No 136
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.03 E-value=2.1e-09 Score=84.18 Aligned_cols=89 Identities=21% Similarity=0.146 Sum_probs=72.5
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG 170 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~ 170 (191)
...+|||||+|.|.++..+.+.+|..+++.+|. |..++.+++ ..++.++.+|+. .++|. +|+|+...+
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~--------~~rv~~~~gd~f-~~~P~--~D~~~l~~v 167 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE--------ADRVEFVPGDFF-DPLPV--ADVYLLRHV 167 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH--------TTTEEEEES-TT-TCCSS--ESEEEEESS
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc--------ccccccccccHH-hhhcc--ccceeeehh
Confidence 456899999999999999999999999999998 777877766 334999999987 55554 999999999
Q ss_pred ccCcCCh--HHHHHHHHhccCCC
Q 029554 171 LHWTNDL--PGAMIQVSIFLLPD 191 (191)
Q Consensus 171 l~~~~d~--~~~l~~i~r~Lkpg 191 (191)
||+++|. ..+|++++++|+||
T Consensus 168 Lh~~~d~~~~~iL~~~~~al~pg 190 (241)
T PF00891_consen 168 LHDWSDEDCVKILRNAAAALKPG 190 (241)
T ss_dssp GGGS-HHHHHHHHHHHHHHSEEC
T ss_pred hhhcchHHHHHHHHHHHHHhCCC
Confidence 9988654 46899999999986
No 137
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.03 E-value=3.6e-10 Score=85.98 Aligned_cols=97 Identities=18% Similarity=0.128 Sum_probs=69.7
Q ss_pred CCCeEEEEcCCccHHHHHH-hhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554 91 TFPTALCLGGSLEAVRRLL-RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL 169 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l-~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~ 169 (191)
...+.||.|||-|+.+..+ .+.+ .+|..+|+.+..++.|++.... .......+.+..++.+.++++.||+||+..
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f--~~VDlVEp~~~Fl~~a~~~l~~--~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW 130 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVF--DEVDLVEPVEKFLEQAKEYLGK--DNPRVGEFYCVGLQDFTPEEGKYDLIWIQW 130 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCC--GGCCEEEEEES-GGG----TT-EEEEEEES
T ss_pred CcceEEecccccchhHHHHHHHhc--CEeEEeccCHHHHHHHHHHhcc--cCCCcceEEecCHhhccCCCCcEeEEEehH
Confidence 3568999999999999866 4555 8999999999999999876642 122346777788887765668999999999
Q ss_pred cccCcC--ChHHHHHHHHhccCCC
Q 029554 170 GLHWTN--DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 170 ~l~~~~--d~~~~l~~i~r~Lkpg 191 (191)
++.|+. |+..+|.++...|+|+
T Consensus 131 ~lghLTD~dlv~fL~RCk~~L~~~ 154 (218)
T PF05891_consen 131 CLGHLTDEDLVAFLKRCKQALKPN 154 (218)
T ss_dssp -GGGS-HHHHHHHHHHHHHHEEEE
T ss_pred hhccCCHHHHHHHHHHHHHhCcCC
Confidence 999996 5678999999999875
No 138
>PRK01581 speE spermidine synthase; Validated
Probab=99.02 E-value=2.6e-09 Score=87.45 Aligned_cols=101 Identities=16% Similarity=0.110 Sum_probs=74.2
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHh--hhhccC---CCCceeeEecCCCC-CCCCCCCcce
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDA--QQDAHN---DNIETCFVVGDEEF-LPLKESSLDL 164 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~--~~~~~~---~~~~~~~~~~d~~~-l~~~~~~fDl 164 (191)
.+.+||++|||+|..+..+.+..+..+++++|+++.+++.|++. +..+.. ...++.++.+|... ++...+.||+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 45699999999999988888766678999999999999999862 111111 24578889998553 4444578999
Q ss_pred EEeCCcccC---cCC--hHHHHHHHHhccCCC
Q 029554 165 AISCLGLHW---TND--LPGAMIQVSIFLLPD 191 (191)
Q Consensus 165 Vis~~~l~~---~~d--~~~~l~~i~r~Lkpg 191 (191)
|++...-.. ... -..+++.+.+.|+||
T Consensus 230 IIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPg 261 (374)
T PRK01581 230 IIIDFPDPATELLSTLYTSELFARIATFLTED 261 (374)
T ss_pred EEEcCCCccccchhhhhHHHHHHHHHHhcCCC
Confidence 999853111 111 146889999999997
No 139
>PLN02366 spermidine synthase
Probab=99.01 E-value=6.6e-09 Score=84.07 Aligned_cols=101 Identities=18% Similarity=0.128 Sum_probs=76.7
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhcc--CCCCceeeEecCCCC-CC-CCCCCcceEE
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH--NDNIETCFVVGDEEF-LP-LKESSLDLAI 166 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~--~~~~~~~~~~~d~~~-l~-~~~~~fDlVi 166 (191)
.+.+||+||||.|.....+.+..+..+++++|+++.+++.+++.+.... ....++.++.+|... +. .+++.||+|+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 4678999999999999999877556899999999999999999875421 124578999999532 22 2356899999
Q ss_pred eCCcccCcCC----hHHHHHHHHhccCCC
Q 029554 167 SCLGLHWTND----LPGAMIQVSIFLLPD 191 (191)
Q Consensus 167 s~~~l~~~~d----~~~~l~~i~r~Lkpg 191 (191)
+...-.+.+. -..+++.+.++|+||
T Consensus 171 ~D~~dp~~~~~~L~t~ef~~~~~~~L~pg 199 (308)
T PLN02366 171 VDSSDPVGPAQELFEKPFFESVARALRPG 199 (308)
T ss_pred EcCCCCCCchhhhhHHHHHHHHHHhcCCC
Confidence 9765443321 246899999999996
No 140
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.00 E-value=2.7e-09 Score=90.70 Aligned_cols=100 Identities=13% Similarity=0.055 Sum_probs=74.4
Q ss_pred ccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEe
Q 029554 89 RKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAIS 167 (191)
Q Consensus 89 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis 167 (191)
..++.+|||+|||+|..+..+++.. +..+|+++|+|+.+++.+++++... ...++.++++|...++ ++++||.|++
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~--g~~~v~~~~~Da~~~~-~~~~fD~Vl~ 324 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL--GITIIETIEGDARSFS-PEEQPDAILL 324 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh--CCCeEEEEeCcccccc-cCCCCCEEEE
Confidence 3467899999999999988877643 2368999999999999999988652 3346888999987765 4578999996
Q ss_pred C----C--ccc------CcCC----------hHHHHHHHHhccCCC
Q 029554 168 C----L--GLH------WTND----------LPGAMIQVSIFLLPD 191 (191)
Q Consensus 168 ~----~--~l~------~~~d----------~~~~l~~i~r~Lkpg 191 (191)
. . .+. |..+ ...++.++.++||||
T Consensus 325 D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg 370 (445)
T PRK14904 325 DAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPG 370 (445)
T ss_pred cCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 2 1 111 1111 235799999999997
No 141
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.00 E-value=5.5e-09 Score=81.56 Aligned_cols=107 Identities=10% Similarity=-0.043 Sum_probs=78.2
Q ss_pred HHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC-C-
Q 029554 80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-P- 156 (191)
Q Consensus 80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l-~- 156 (191)
+++..+.. .....+|||+|||+|+.+..++... +..+++++|+++.+++.|++.+... +...++.++.+|.... +
T Consensus 58 ~~L~~l~~-~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~-gl~~~i~~~~gda~~~L~~ 135 (234)
T PLN02781 58 LFLSMLVK-IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA-GVDHKINFIQSDALSALDQ 135 (234)
T ss_pred HHHHHHHH-HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-CCCCcEEEEEccHHHHHHH
Confidence 34444443 3356789999999999888887643 3579999999999999999988752 2235688999986542 2
Q ss_pred ----CCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 157 ----LKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 157 ----~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
.+.++||+|+....- +.....+.++.++|+||
T Consensus 136 l~~~~~~~~fD~VfiDa~k---~~y~~~~~~~~~ll~~G 171 (234)
T PLN02781 136 LLNNDPKPEFDFAFVDADK---PNYVHFHEQLLKLVKVG 171 (234)
T ss_pred HHhCCCCCCCCEEEECCCH---HHHHHHHHHHHHhcCCC
Confidence 124689999986431 24457788889999987
No 142
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.00 E-value=2.4e-09 Score=85.00 Aligned_cols=101 Identities=7% Similarity=-0.075 Sum_probs=75.0
Q ss_pred ccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEe
Q 029554 89 RKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAIS 167 (191)
Q Consensus 89 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis 167 (191)
..++.+|||+|||+|..+..++... +...|+++|+++.+++.+++++.. ....++.+...|...++...+.||.|++
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~--~g~~~v~~~~~D~~~~~~~~~~fD~Vl~ 146 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINR--CGVLNVAVTNFDGRVFGAAVPKFDAILL 146 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHH--cCCCcEEEecCCHHHhhhhccCCCEEEE
Confidence 4577899999999999999887653 235899999999999999998875 2334678888887766544567999996
Q ss_pred CC------cccCcCC----------------hHHHHHHHHhccCCC
Q 029554 168 CL------GLHWTND----------------LPGAMIQVSIFLLPD 191 (191)
Q Consensus 168 ~~------~l~~~~d----------------~~~~l~~i~r~Lkpg 191 (191)
.. ++..-++ ...+|.++.++||||
T Consensus 147 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg 192 (264)
T TIGR00446 147 DAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPG 192 (264)
T ss_pred cCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 32 1211111 234888888999986
No 143
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.99 E-value=1.3e-09 Score=82.83 Aligned_cols=98 Identities=16% Similarity=0.135 Sum_probs=75.9
Q ss_pred CCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CC--CCCCCcceEEeC
Q 029554 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LP--LKESSLDLAISC 168 (191)
Q Consensus 92 ~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~--~~~~~fDlVis~ 168 (191)
...+||||||.|.++..++...|...++|+|++...+..+.++... ....++.++++|+.. ++ ++++++|.|+.+
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~--~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEK--RGLKNVRFLRGDARELLRRLFPPGSVDRIYIN 95 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHH--HTTSSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHh--hcccceEEEEccHHHHHhhcccCCchheEEEe
Confidence 3479999999999999999999999999999999999999888765 356789999999775 32 467899999999
Q ss_pred CcccCcCC--------hHHHHHHHHhccCCC
Q 029554 169 LGLHWTND--------LPGAMIQVSIFLLPD 191 (191)
Q Consensus 169 ~~l~~~~d--------~~~~l~~i~r~Lkpg 191 (191)
+-=-|... -..++..+.++|+||
T Consensus 96 FPDPWpK~rH~krRl~~~~fl~~~~~~L~~g 126 (195)
T PF02390_consen 96 FPDPWPKKRHHKRRLVNPEFLELLARVLKPG 126 (195)
T ss_dssp S-----SGGGGGGSTTSHHHHHHHHHHEEEE
T ss_pred CCCCCcccchhhhhcCCchHHHHHHHHcCCC
Confidence 87666542 347899999999986
No 144
>PRK03612 spermidine synthase; Provisional
Probab=98.99 E-value=1.8e-09 Score=93.40 Aligned_cols=101 Identities=20% Similarity=0.129 Sum_probs=75.2
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHh--hhhcc---CCCCceeeEecCCCC-CCCCCCCcce
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDA--QQDAH---NDNIETCFVVGDEEF-LPLKESSLDL 164 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~--~~~~~---~~~~~~~~~~~d~~~-l~~~~~~fDl 164 (191)
.+.+|||+|||+|..+..+.+..+..+++++|+++++++.+++. +.... -..++++++.+|... +...+++||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 45789999999999999888764448999999999999999983 32211 123568888898653 3333468999
Q ss_pred EEeCCcccCcCCh-----HHHHHHHHhccCCC
Q 029554 165 AISCLGLHWTNDL-----PGAMIQVSIFLLPD 191 (191)
Q Consensus 165 Vis~~~l~~~~d~-----~~~l~~i~r~Lkpg 191 (191)
|+++..-.+.+.. ..+++.+.++|+||
T Consensus 377 Ii~D~~~~~~~~~~~L~t~ef~~~~~~~L~pg 408 (521)
T PRK03612 377 IIVDLPDPSNPALGKLYSVEFYRLLKRRLAPD 408 (521)
T ss_pred EEEeCCCCCCcchhccchHHHHHHHHHhcCCC
Confidence 9998655443222 35789999999996
No 145
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=6.3e-09 Score=77.28 Aligned_cols=72 Identities=18% Similarity=0.146 Sum_probs=60.7
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL 169 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~ 169 (191)
.+.+|+|+|||||.++....-.+ ...|+++|+++++++.++++..+ ...++.|.+.|+.... +.+|.|+.|=
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lG-a~~V~~vdiD~~a~ei~r~N~~~---l~g~v~f~~~dv~~~~---~~~dtvimNP 116 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLG-ASRVLAVDIDPEALEIARANAEE---LLGDVEFVVADVSDFR---GKFDTVIMNP 116 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcC-CcEEEEEecCHHHHHHHHHHHHh---hCCceEEEEcchhhcC---CccceEEECC
Confidence 56679999999999988776655 47899999999999999998875 5566999999998875 5689999873
No 146
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.97 E-value=2.8e-09 Score=82.29 Aligned_cols=101 Identities=17% Similarity=0.049 Sum_probs=76.5
Q ss_pred ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhh---c-------cCCCCceeeEecCCCCCCCC
Q 029554 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD---A-------HNDNIETCFVVGDEEFLPLK 158 (191)
Q Consensus 89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~---~-------~~~~~~~~~~~~d~~~l~~~ 158 (191)
..++.+||..|||.|.....|++.| .+|+|+|+|+..++.+.+.... . .....++.+.++|+-.++..
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~G--~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQG--HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHTT--EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHCC--CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 3456699999999999999999988 8999999999999998443211 0 01233578999998776533
Q ss_pred C-CCcceEEeCCcccCcC--ChHHHHHHHHhccCCC
Q 029554 159 E-SSLDLAISCLGLHWTN--DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 159 ~-~~fDlVis~~~l~~~~--d~~~~l~~i~r~Lkpg 191 (191)
. ++||+|+=..+++-++ ......+.+.++|+||
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~ 148 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPG 148 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEE
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCC
Confidence 3 5899999988888774 5678899999999985
No 147
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.96 E-value=3.4e-09 Score=94.69 Aligned_cols=98 Identities=14% Similarity=0.006 Sum_probs=73.7
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCC--CceeeEecCCCC-CCCCCCCcceEEe
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN--IETCFVVGDEEF-LPLKESSLDLAIS 167 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~--~~~~~~~~d~~~-l~~~~~~fDlVis 167 (191)
.+.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.+++++.. +.. .++.++++|+.. +.-..++||+||+
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~--ng~~~~~v~~i~~D~~~~l~~~~~~fDlIil 614 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFAL--NGLSGRQHRLIQADCLAWLKEAREQFDLIFI 614 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHH--hCCCccceEEEEccHHHHHHHcCCCcCEEEE
Confidence 46789999999999999998864 35799999999999999998865 222 468999999643 2211468999999
Q ss_pred CCc-----------ccCcCChHHHHHHHHhccCCC
Q 029554 168 CLG-----------LHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 168 ~~~-----------l~~~~d~~~~l~~i~r~Lkpg 191 (191)
+-- .....+....+..+.++|+||
T Consensus 615 DPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~g 649 (702)
T PRK11783 615 DPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPG 649 (702)
T ss_pred CCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCC
Confidence 621 111234566788888899986
No 148
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.94 E-value=9.4e-09 Score=76.65 Aligned_cols=102 Identities=15% Similarity=-0.002 Sum_probs=66.7
Q ss_pred ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhcc-CCCCceeeEecCCCC-C---CCCCCCcc
Q 029554 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH-NDNIETCFVVGDEEF-L---PLKESSLD 163 (191)
Q Consensus 89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~-~~~~~~~~~~~d~~~-l---~~~~~~fD 163 (191)
...+.+|||||||+|..+..++...+..+|+.+|.++ .++.++.+..... ....++.+...|-.. . .....+||
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 3467799999999999999888874568999999999 8888888776511 023456667666432 1 12346899
Q ss_pred eEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 164 LAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 164 lVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
+|+.+-+++.......++.-+.++|+|+
T Consensus 122 ~IlasDv~Y~~~~~~~L~~tl~~ll~~~ 149 (173)
T PF10294_consen 122 VILASDVLYDEELFEPLVRTLKRLLKPN 149 (173)
T ss_dssp EEEEES--S-GGGHHHHHHHHHHHBTT-
T ss_pred EEEEecccchHHHHHHHHHHHHHHhCCC
Confidence 9999999998878888899999998874
No 149
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.92 E-value=5.1e-09 Score=81.06 Aligned_cols=96 Identities=13% Similarity=0.146 Sum_probs=81.8
Q ss_pred CeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCC-ceeeEecCCCCC---CCCCCCcceEEeC
Q 029554 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFL---PLKESSLDLAISC 168 (191)
Q Consensus 93 ~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~-~~~~~~~d~~~l---~~~~~~fDlVis~ 168 (191)
..+||||||.|.++..+++..|...++|+|+....+..|.+++.+ ... ++.+++.|+..+ -+++++.|-|..+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~---~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~ 126 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKE---LGLKNLRLLCGDAVEVLDYLIPDGSLDKIYIN 126 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHH---cCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEE
Confidence 579999999999999999999999999999999999999888875 444 899999996632 2456699999999
Q ss_pred CcccCcCC--------hHHHHHHHHhccCCC
Q 029554 169 LGLHWTND--------LPGAMIQVSIFLLPD 191 (191)
Q Consensus 169 ~~l~~~~d--------~~~~l~~i~r~Lkpg 191 (191)
+.=-|... .+.+++.+.++|+||
T Consensus 127 FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~g 157 (227)
T COG0220 127 FPDPWPKKRHHKRRLTQPEFLKLYARKLKPG 157 (227)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHccCC
Confidence 98887643 347899999999997
No 150
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.91 E-value=1e-08 Score=79.99 Aligned_cols=89 Identities=17% Similarity=0.161 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC
Q 029554 76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL 155 (191)
Q Consensus 76 ~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l 155 (191)
.+.+.+++..+ .+++..|||+|.|||.++..|.+.+ +.|+++|+++.|++...++... .....+.+++.+|+...
T Consensus 45 ~v~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~~--kkVvA~E~Dprmvael~krv~g-tp~~~kLqV~~gD~lK~ 119 (315)
T KOG0820|consen 45 LVIDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEAG--KKVVAVEIDPRMVAELEKRVQG-TPKSGKLQVLHGDFLKT 119 (315)
T ss_pred HHHHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHhc--CeEEEEecCcHHHHHHHHHhcC-CCccceeeEEecccccC
Confidence 45666666655 5688999999999999999999988 9999999999999999998854 22346789999998876
Q ss_pred CCCCCCcceEEeCCcc
Q 029554 156 PLKESSLDLAISCLGL 171 (191)
Q Consensus 156 ~~~~~~fDlVis~~~l 171 (191)
++| .||.||+|.-.
T Consensus 120 d~P--~fd~cVsNlPy 133 (315)
T KOG0820|consen 120 DLP--RFDGCVSNLPY 133 (315)
T ss_pred CCc--ccceeeccCCc
Confidence 544 59999997543
No 151
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.90 E-value=1.9e-08 Score=76.88 Aligned_cols=135 Identities=13% Similarity=0.061 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHH
Q 029554 52 DRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKL 130 (191)
Q Consensus 52 d~~~~~~~~~~~a~~y~~~~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~ 130 (191)
+.........++..........-.....+++..+.. .....+||||||++|+.+..++...| ..+|+.+|+++...+.
T Consensus 7 ~~~~l~~l~~~t~~~~~~~~~~i~~~~g~lL~~l~~-~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~ 85 (205)
T PF01596_consen 7 EPELLKELREFTRENQGLPQMSISPETGQLLQMLVR-LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEI 85 (205)
T ss_dssp STHHHHHHHHHHHCTTTTGGGSHHHHHHHHHHHHHH-HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHH
T ss_pred CCHHHHHHHHHHHhCcCCCCCccCHHHHHHHHHHHH-hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHH
Confidence 444455555555543322222222223345555554 33567899999999999999997654 5799999999999999
Q ss_pred HHHhhhhccCCCCceeeEecCCCC-CC-----CCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 131 CKDAQQDAHNDNIETCFVVGDEEF-LP-----LKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 131 a~~~~~~~~~~~~~~~~~~~d~~~-l~-----~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
|++.+... +...+++++.+|... ++ -+.++||+|+.-..= .+....+..+.++|+||
T Consensus 86 A~~~~~~a-g~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K---~~y~~y~~~~~~ll~~g 148 (205)
T PF01596_consen 86 ARENFRKA-GLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDADK---RNYLEYFEKALPLLRPG 148 (205)
T ss_dssp HHHHHHHT-TGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEESTG---GGHHHHHHHHHHHEEEE
T ss_pred HHHHHHhc-CCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEcccc---cchhhHHHHHhhhccCC
Confidence 99887651 234579999998542 22 124689999976532 24566777777888775
No 152
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.88 E-value=1.4e-08 Score=77.34 Aligned_cols=77 Identities=6% Similarity=-0.133 Sum_probs=58.8
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CCCCCCCcceEEeCC
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LPLKESSLDLAISCL 169 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~~~~~~fDlVis~~ 169 (191)
.+.+|||+|||+|.++..+..++ ..+|+++|.++..++.+++++.. ....++.++++|+.. ++...++||+|+++=
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~--~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DP 129 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLAT--LKAGNARVVNTNALSFLAQPGTPHNVVFVDP 129 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHH--hCCCcEEEEEchHHHHHhhcCCCceEEEECC
Confidence 45789999999999998644444 37999999999999999988765 223468889898653 332345799999975
Q ss_pred c
Q 029554 170 G 170 (191)
Q Consensus 170 ~ 170 (191)
-
T Consensus 130 P 130 (199)
T PRK10909 130 P 130 (199)
T ss_pred C
Confidence 5
No 153
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=3.7e-08 Score=76.45 Aligned_cols=103 Identities=17% Similarity=0.086 Sum_probs=83.6
Q ss_pred HHHHHHHhcccCCCeEEEEcCCccHHHHHHhh-cCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC
Q 029554 80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG-RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK 158 (191)
Q Consensus 80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~-~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~ 158 (191)
.++.++. ..++.+|||.|.|+|.++..|+. .++..+|+.+|+-++..+.|+++++.+ .....+.+..+|+...-++
T Consensus 85 ~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~-~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 85 YIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF-GLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred HHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh-ccccceEEEeccccccccc
Confidence 3444444 56899999999999999999985 567789999999999999999999763 2233488888997766555
Q ss_pred CCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 159 ESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 159 ~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
+ .||.|+.- ++||..++..+.++|+||
T Consensus 162 ~-~vDav~LD-----mp~PW~~le~~~~~Lkpg 188 (256)
T COG2519 162 E-DVDAVFLD-----LPDPWNVLEHVSDALKPG 188 (256)
T ss_pred c-ccCEEEEc-----CCChHHHHHHHHHHhCCC
Confidence 4 89999854 669999999999999997
No 154
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.85 E-value=7.7e-09 Score=80.20 Aligned_cols=90 Identities=19% Similarity=0.299 Sum_probs=69.3
Q ss_pred HHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC
Q 029554 78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL 157 (191)
Q Consensus 78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~ 157 (191)
.+.+++.+.. ......|-|+|||.+.++. ... ..|+.+|+-+ .+-+++..|+..+|+
T Consensus 168 ld~ii~~ik~-r~~~~vIaD~GCGEakiA~---~~~--~kV~SfDL~a-----------------~~~~V~~cDm~~vPl 224 (325)
T KOG3045|consen 168 LDVIIRKIKR-RPKNIVIADFGCGEAKIAS---SER--HKVHSFDLVA-----------------VNERVIACDMRNVPL 224 (325)
T ss_pred HHHHHHHHHh-CcCceEEEecccchhhhhh---ccc--cceeeeeeec-----------------CCCceeeccccCCcC
Confidence 3455555553 2234579999999998876 222 5788888632 225678899999999
Q ss_pred CCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 158 KESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 158 ~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
++++.|++|.+++|.-. |+..++.++.|+|+||
T Consensus 225 ~d~svDvaV~CLSLMgt-n~~df~kEa~RiLk~g 257 (325)
T KOG3045|consen 225 EDESVDVAVFCLSLMGT-NLADFIKEANRILKPG 257 (325)
T ss_pred ccCcccEEEeeHhhhcc-cHHHHHHHHHHHhccC
Confidence 99999999999888744 8999999999999996
No 155
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.85 E-value=1.4e-08 Score=84.87 Aligned_cols=98 Identities=14% Similarity=0.040 Sum_probs=69.0
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCC--CceeeEecCCCCC-C---CCCCCcce
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN--IETCFVVGDEEFL-P---LKESSLDL 164 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~--~~~~~~~~d~~~l-~---~~~~~fDl 164 (191)
.+.+|||+|||+|.++...+..+ ..+|+++|+|+.+++.+++++.. +.. .++.++++|+... . ...++||+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~g-a~~V~~VD~s~~al~~a~~N~~~--Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDl 296 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVEL--NKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHH--cCCCCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence 46789999999999987655433 46999999999999999998865 332 3688999996542 1 13468999
Q ss_pred EEeCCcccC---------cCChHHHHHHHHhccCCC
Q 029554 165 AISCLGLHW---------TNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 165 Vis~~~l~~---------~~d~~~~l~~i~r~Lkpg 191 (191)
|+++----- ..+....+....++|+||
T Consensus 297 VilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~g 332 (396)
T PRK15128 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPG 332 (396)
T ss_pred EEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 998732100 012334445667788875
No 156
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.84 E-value=1.9e-08 Score=85.24 Aligned_cols=75 Identities=9% Similarity=0.059 Sum_probs=61.1
Q ss_pred cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC----CCCCCCcceE
Q 029554 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL----PLKESSLDLA 165 (191)
Q Consensus 90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l----~~~~~~fDlV 165 (191)
.++.+|||+|||+|.++..+++.. .+|+++|+++.+++.+++++.. +...++.++.+|++.. ++.+++||+|
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~--~~~~nv~~~~~d~~~~l~~~~~~~~~~D~v 366 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAEL--NGIANVEFLAGTLETVLPKQPWAGQIPDVL 366 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHH--hCCCceEEEeCCHHHHHHHHHhcCCCCCEE
Confidence 355789999999999999999876 7899999999999999998765 3445789999997542 2334679999
Q ss_pred EeC
Q 029554 166 ISC 168 (191)
Q Consensus 166 is~ 168 (191)
+.+
T Consensus 367 i~d 369 (431)
T TIGR00479 367 LLD 369 (431)
T ss_pred EEC
Confidence 975
No 157
>PRK04148 hypothetical protein; Provisional
Probab=98.83 E-value=7.7e-08 Score=68.26 Aligned_cols=96 Identities=19% Similarity=0.149 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhcccCCCeEEEEcCCccH-HHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC
Q 029554 77 VAENLLDRLEDCRKTFPTALCLGGSLEA-VRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL 155 (191)
Q Consensus 77 ~~~~l~~~l~~~~~~~~~VLDlGcG~G~-~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l 155 (191)
+++.+.+.+. .....+|||||||.|. .+..|.+.+ .+|+++|+++..++.+++.. +.++..|+-.-
T Consensus 4 i~~~l~~~~~--~~~~~kileIG~GfG~~vA~~L~~~G--~~ViaIDi~~~aV~~a~~~~---------~~~v~dDlf~p 70 (134)
T PRK04148 4 IAEFIAENYE--KGKNKKIVELGIGFYFKVAKKLKESG--FDVIVIDINEKAVEKAKKLG---------LNAFVDDLFNP 70 (134)
T ss_pred HHHHHHHhcc--cccCCEEEEEEecCCHHHHHHHHHCC--CEEEEEECCHHHHHHHHHhC---------CeEEECcCCCC
Confidence 3444444444 2245789999999996 888888877 89999999999988886653 67788886543
Q ss_pred CCC-CCCcceEEeCCcccCcCChHHHHHHHHhcc
Q 029554 156 PLK-ESSLDLAISCLGLHWTNDLPGAMIQVSIFL 188 (191)
Q Consensus 156 ~~~-~~~fDlVis~~~l~~~~d~~~~l~~i~r~L 188 (191)
++. -+.+|+|.+.. -..+++..+.++++.+
T Consensus 71 ~~~~y~~a~liysir---pp~el~~~~~~la~~~ 101 (134)
T PRK04148 71 NLEIYKNAKLIYSIR---PPRDLQPFILELAKKI 101 (134)
T ss_pred CHHHHhcCCEEEEeC---CCHHHHHHHHHHHHHc
Confidence 322 25689998743 3446666666666544
No 158
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.83 E-value=1.5e-08 Score=76.55 Aligned_cols=91 Identities=20% Similarity=0.294 Sum_probs=57.2
Q ss_pred HHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC
Q 029554 79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK 158 (191)
Q Consensus 79 ~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~ 158 (191)
+.+++.+.. ......|-|+|||.+.++..+... ..|...|.-.. +-.+...|+..+|++
T Consensus 61 d~iI~~l~~-~~~~~viaD~GCGdA~la~~~~~~---~~V~SfDLva~-----------------n~~Vtacdia~vPL~ 119 (219)
T PF05148_consen 61 DVIIEWLKK-RPKSLVIADFGCGDAKLAKAVPNK---HKVHSFDLVAP-----------------NPRVTACDIANVPLE 119 (219)
T ss_dssp HHHHHHHCT-S-TTS-EEEES-TT-HHHHH--S------EEEEESS-S-----------------STTEEES-TTS-S--
T ss_pred HHHHHHHHh-cCCCEEEEECCCchHHHHHhcccC---ceEEEeeccCC-----------------CCCEEEecCccCcCC
Confidence 445555553 223468999999999999877542 47999997431 135678999999999
Q ss_pred CCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 159 ESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 159 ~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
++++|++|.+++|.-. |...++.|..|+||||
T Consensus 120 ~~svDv~VfcLSLMGT-n~~~fi~EA~RvLK~~ 151 (219)
T PF05148_consen 120 DESVDVAVFCLSLMGT-NWPDFIREANRVLKPG 151 (219)
T ss_dssp TT-EEEEEEES---SS--HHHHHHHHHHHEEEE
T ss_pred CCceeEEEEEhhhhCC-CcHHHHHHHHheeccC
Confidence 9999999999998866 8999999999999985
No 159
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.82 E-value=4.3e-08 Score=75.26 Aligned_cols=107 Identities=17% Similarity=0.175 Sum_probs=79.6
Q ss_pred HHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHHHHHhhhhccCCCCceeeEe-cCCC-CCC
Q 029554 80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVV-GDEE-FLP 156 (191)
Q Consensus 80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~-~d~~-~l~ 156 (191)
.++..+.. .....+|||+|.+.|+.+.+++...| ..+++.+|.++++.+.|++.+.+. ....++..+. +|.. .+.
T Consensus 49 ~~L~~L~~-~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~a-g~~~~i~~~~~gdal~~l~ 126 (219)
T COG4122 49 ALLRLLAR-LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEA-GVDDRIELLLGGDALDVLS 126 (219)
T ss_pred HHHHHHHH-hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHc-CCcceEEEEecCcHHHHHH
Confidence 34444443 33677999999999999999988776 679999999999999999998762 2233466776 4633 333
Q ss_pred -CCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 157 -LKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 157 -~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
...++||+|+.-.. =.+.+.++..+.++|+||
T Consensus 127 ~~~~~~fDliFIDad---K~~yp~~le~~~~lLr~G 159 (219)
T COG4122 127 RLLDGSFDLVFIDAD---KADYPEYLERALPLLRPG 159 (219)
T ss_pred hccCCCccEEEEeCC---hhhCHHHHHHHHHHhCCC
Confidence 45689999996433 235678899999999987
No 160
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.81 E-value=2.9e-08 Score=82.58 Aligned_cols=74 Identities=11% Similarity=0.031 Sum_probs=59.7
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC-CCCCCCcceEEeC
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-PLKESSLDLAISC 168 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l-~~~~~~fDlVis~ 168 (191)
++.+|||++||+|.++..++..+ .+|+++|+++.+++.++++... +...++.+..+|++.. +...++||+|+.+
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~--~~v~~vE~~~~av~~a~~N~~~--~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D 307 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD--TQLTGIEIESEAIACAQQSAQM--LGLDNLSFAALDSAKFATAQMSAPELVLVN 307 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC--CeEEEEECCHHHHHHHHHHHHH--cCCCcEEEEECCHHHHHHhcCCCCCEEEEC
Confidence 45789999999999999998766 7999999999999999988765 3334789999997643 2122469999986
No 161
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=2.8e-08 Score=70.77 Aligned_cols=100 Identities=12% Similarity=0.041 Sum_probs=71.4
Q ss_pred hcCCCchHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCce
Q 029554 66 LTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIET 145 (191)
Q Consensus 66 ~y~~~~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~ 145 (191)
+|.....+...+..-+-....+ ..+..++|+|||.|.+.....- .....|+|+|+.++.++.+.++..+ ...++
T Consensus 25 QY~T~p~iAasM~~~Ih~Tygd--iEgkkl~DLgcgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNaeE---fEvqi 98 (185)
T KOG3420|consen 25 QYPTRPHIAASMLYTIHNTYGD--IEGKKLKDLGCGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNAEE---FEVQI 98 (185)
T ss_pred hCCCcHHHHHHHHHHHHhhhcc--ccCcchhhhcCchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhchHH---hhhhh
Confidence 3444433333333333333332 3677899999999999854443 3357899999999999999888765 44557
Q ss_pred eeEecCCCCCCCCCCCcceEEeCCcc
Q 029554 146 CFVVGDEEFLPLKESSLDLAISCLGL 171 (191)
Q Consensus 146 ~~~~~d~~~l~~~~~~fDlVis~~~l 171 (191)
.+.+.|...+.+..+.||.++.|--+
T Consensus 99 dlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 99 DLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred heeeeeccchhccCCeEeeEEecCCC
Confidence 88999988888788999999988544
No 162
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.78 E-value=3.2e-08 Score=80.34 Aligned_cols=82 Identities=12% Similarity=0.034 Sum_probs=59.4
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEe-cCCCC----CCCCCCCcceE
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVV-GDEEF----LPLKESSLDLA 165 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~-~d~~~----l~~~~~~fDlV 165 (191)
...+|||||||+|.+...+..+.+..+++++|+++.+++.|++.+....+...++.+.. .+... +..+++.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 45689999999998888887765668999999999999999998876111233555543 23222 11245789999
Q ss_pred EeCCccc
Q 029554 166 ISCLGLH 172 (191)
Q Consensus 166 is~~~l~ 172 (191)
+||==++
T Consensus 194 vcNPPf~ 200 (321)
T PRK11727 194 LCNPPFH 200 (321)
T ss_pred EeCCCCc
Confidence 9996554
No 163
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.78 E-value=4.9e-09 Score=88.16 Aligned_cols=92 Identities=17% Similarity=0.174 Sum_probs=62.8
Q ss_pred eEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcc-c
Q 029554 94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGL-H 172 (191)
Q Consensus 94 ~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l-~ 172 (191)
.+||+|||+|.++..|.+++ |+.+-+++.-...++.++.. ..+....+-......+||+++.||+|.|..++ .
T Consensus 120 ~~LDvGcG~aSF~a~l~~r~----V~t~s~a~~d~~~~qvqfal--eRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~ 193 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLERN----VTTMSFAPNDEHEAQVQFAL--ERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIP 193 (506)
T ss_pred EEEeccceeehhHHHHhhCC----ceEEEcccccCCchhhhhhh--hcCcchhhhhhccccccCCccchhhhhccccccc
Confidence 68999999999999999976 55555444322222222211 11111222223356799999999999999886 5
Q ss_pred CcCChHHHHHHHHhccCCC
Q 029554 173 WTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 173 ~~~d~~~~l~~i~r~Lkpg 191 (191)
|..+-...|-++.|+|+||
T Consensus 194 W~~~~g~~l~evdRvLRpG 212 (506)
T PF03141_consen 194 WHPNDGFLLFEVDRVLRPG 212 (506)
T ss_pred chhcccceeehhhhhhccC
Confidence 6666677899999999997
No 164
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=5.6e-08 Score=76.31 Aligned_cols=86 Identities=13% Similarity=0.140 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC
Q 029554 77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP 156 (191)
Q Consensus 77 ~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~ 156 (191)
+.+++++... ..++..|||||+|.|.+|..|.+++ .+|+++|+++.+++..+++.. ...++.++.+|+...+
T Consensus 18 v~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~----~~~n~~vi~~DaLk~d 89 (259)
T COG0030 18 VIDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKERFA----PYDNLTVINGDALKFD 89 (259)
T ss_pred HHHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHhcc----cccceEEEeCchhcCc
Confidence 4556665555 3357899999999999999999988 889999999999999988763 4567999999998887
Q ss_pred CCCC-CcceEEeCCc
Q 029554 157 LKES-SLDLAISCLG 170 (191)
Q Consensus 157 ~~~~-~fDlVis~~~ 170 (191)
++.- .++.|++|.-
T Consensus 90 ~~~l~~~~~vVaNlP 104 (259)
T COG0030 90 FPSLAQPYKVVANLP 104 (259)
T ss_pred chhhcCCCEEEEcCC
Confidence 7643 6889998853
No 165
>PLN02672 methionine S-methyltransferase
Probab=98.77 E-value=2.5e-08 Score=91.74 Aligned_cols=77 Identities=14% Similarity=-0.067 Sum_probs=60.4
Q ss_pred CCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhcc--------------CCCCceeeEecCCCCCCC
Q 029554 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH--------------NDNIETCFVVGDEEFLPL 157 (191)
Q Consensus 92 ~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~--------------~~~~~~~~~~~d~~~l~~ 157 (191)
+.+|||+|||+|.++..++..++..+|+++|+|+.+++.|+++..... ....++.++++|+.....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 358999999999999999988877899999999999999998876411 012368999999654321
Q ss_pred C-CCCcceEEeC
Q 029554 158 K-ESSLDLAISC 168 (191)
Q Consensus 158 ~-~~~fDlVis~ 168 (191)
. ..+||+||||
T Consensus 199 ~~~~~fDlIVSN 210 (1082)
T PLN02672 199 DNNIELDRIVGC 210 (1082)
T ss_pred ccCCceEEEEEC
Confidence 1 2369999997
No 166
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.74 E-value=2.2e-08 Score=80.19 Aligned_cols=100 Identities=10% Similarity=-0.041 Sum_probs=72.7
Q ss_pred CCeEEEEcCCccHHHHHH----hhcC----CCceEEEEECChhHHHHHHHhhhh-c--------------c-------C-
Q 029554 92 FPTALCLGGSLEAVRRLL----RGRG----GIEKLIMMDTSYDMLKLCKDAQQD-A--------------H-------N- 140 (191)
Q Consensus 92 ~~~VLDlGcG~G~~~~~l----~~~~----~~~~v~~vD~s~~~l~~a~~~~~~-~--------------~-------~- 140 (191)
.-+|+..||++|.-...+ .+.+ ...+++|+|+|+.+++.|++-.-. + . +
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 358999999999543333 3321 135799999999999999875210 0 0 0
Q ss_pred ------CCCceeeEecCCCCCCCC-CCCcceEEeCCcccCcC--ChHHHHHHHHhccCCC
Q 029554 141 ------DNIETCFVVGDEEFLPLK-ESSLDLAISCLGLHWTN--DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 141 ------~~~~~~~~~~d~~~l~~~-~~~fDlVis~~~l~~~~--d~~~~l~~i~r~Lkpg 191 (191)
....+.|.+.|+...+++ .+.||+|+|.+++.|++ ....++.++.+.|+||
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pg 255 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPD 255 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCC
Confidence 013568888887764433 57899999999999995 4678999999999997
No 167
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.73 E-value=5.1e-08 Score=78.75 Aligned_cols=77 Identities=16% Similarity=0.130 Sum_probs=61.6
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG 170 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~ 170 (191)
.+..|||+|||+|.++..-++.| ..+|+++|.|.-+ +.|.+.+.. ++....+.++.+.++++.+|..++|+|+|-+.
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~-N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKD-NGLEDVITVIKGKVEDIELPVEKVDIIVSEWM 136 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHh-cCccceEEEeecceEEEecCccceeEEeehhh
Confidence 56789999999999999988887 6789999988765 777776654 23345688999998877766789999998543
No 168
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.73 E-value=4.7e-08 Score=75.25 Aligned_cols=101 Identities=14% Similarity=0.216 Sum_probs=70.5
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCC----------------------------
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN---------------------------- 142 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~---------------------------- 142 (191)
.+..+|||||-.|.++..+++.+....++|+||++..+..|++..+.-....
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 4567999999999999999998878899999999999999998765310000
Q ss_pred -----CceeeEecC-----CCCCCCCCCCcceEEeCCcccCc-----C-ChHHHHHHHHhccCCC
Q 029554 143 -----IETCFVVGD-----EEFLPLKESSLDLAISCLGLHWT-----N-DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 143 -----~~~~~~~~d-----~~~l~~~~~~fDlVis~~~l~~~-----~-d~~~~l~~i~r~Lkpg 191 (191)
.++.+...+ .+.+.+....||+|+|-.+-.|+ + -+..+++++.++|.||
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pg 202 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPG 202 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcC
Confidence 011111111 00112344679999997665554 2 2568999999999986
No 169
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.71 E-value=1.3e-07 Score=74.00 Aligned_cols=94 Identities=21% Similarity=0.172 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhcc-cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCC-
Q 029554 75 DAVAENLLDRLEDCR-KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE- 152 (191)
Q Consensus 75 ~~~~~~l~~~l~~~~-~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~- 152 (191)
++..+.+++.+.... ..+..|||+|||+|.++..+....|.+.++++|.|+..+..+.+++... .....+.++..++
T Consensus 131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~-~l~g~i~v~~~~me 209 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRL-KLSGRIEVIHNIME 209 (328)
T ss_pred HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHH-hhcCceEEEecccc
Confidence 344444444443211 1334799999999999999988878899999999999999999887652 1223344443332
Q ss_pred ----CCCCCCCCCcceEEeCC
Q 029554 153 ----EFLPLKESSLDLAISCL 169 (191)
Q Consensus 153 ----~~l~~~~~~fDlVis~~ 169 (191)
+..+...+++|+++||-
T Consensus 210 ~d~~~~~~l~~~~~dllvsNP 230 (328)
T KOG2904|consen 210 SDASDEHPLLEGKIDLLVSNP 230 (328)
T ss_pred cccccccccccCceeEEecCC
Confidence 23445679999999984
No 170
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.71 E-value=3.5e-08 Score=74.91 Aligned_cols=101 Identities=13% Similarity=-0.039 Sum_probs=63.0
Q ss_pred CCCeEEEEcCCccHHHHHH----hh---c-CC-CceEEEEECChhHHHHHHHhhh-h--------------c---cC-C-
Q 029554 91 TFPTALCLGGSLEAVRRLL----RG---R-GG-IEKLIMMDTSYDMLKLCKDAQQ-D--------------A---HN-D- 141 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l----~~---~-~~-~~~v~~vD~s~~~l~~a~~~~~-~--------------~---~~-~- 141 (191)
..-+|+..||++|.-.-.| .+ . .+ ..+++|+|+|+.+++.|++-.- . . .+ .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4458999999999554333 33 1 11 3689999999999999987421 0 0 00 0
Q ss_pred ------CCceeeEecCCCCCCCCCCCcceEEeCCcccCcCCh--HHHHHHHHhccCCC
Q 029554 142 ------NIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDL--PGAMIQVSIFLLPD 191 (191)
Q Consensus 142 ------~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~--~~~l~~i~r~Lkpg 191 (191)
...+.|...|+...+.+.+.||+|+|.++|-|+++. ..++..+.+.|+||
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pg 168 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPG 168 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEE
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCC
Confidence 135788888977744456889999999999999643 57899999999986
No 171
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.70 E-value=1.2e-07 Score=71.83 Aligned_cols=96 Identities=14% Similarity=0.021 Sum_probs=69.0
Q ss_pred eEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCc-eeeEecCCCCC--C------CCCCCcce
Q 029554 94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIE-TCFVVGDEEFL--P------LKESSLDL 164 (191)
Q Consensus 94 ~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~-~~~~~~d~~~l--~------~~~~~fDl 164 (191)
+|||||||||....++++..|.....-.|+++..+...+...... ...+ ..-+..|+... + +..++||+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~--~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEA--GLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhc--CCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 599999999999999999999888999999988765444433221 1111 12223444322 2 23568999
Q ss_pred EEeCCcccCcC--ChHHHHHHHHhccCCC
Q 029554 165 AISCLGLHWTN--DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 165 Vis~~~l~~~~--d~~~~l~~i~r~Lkpg 191 (191)
|+|.+++|-.+ ....+|+.+.++|+||
T Consensus 106 i~~~N~lHI~p~~~~~~lf~~a~~~L~~g 134 (204)
T PF06080_consen 106 IFCINMLHISPWSAVEGLFAGAARLLKPG 134 (204)
T ss_pred eeehhHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 99999999664 5678899999999986
No 172
>PLN02476 O-methyltransferase
Probab=98.69 E-value=3.3e-07 Score=72.97 Aligned_cols=107 Identities=13% Similarity=-0.027 Sum_probs=77.7
Q ss_pred HHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CC-
Q 029554 80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LP- 156 (191)
Q Consensus 80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~- 156 (191)
+++..+.. .....+|||+|+++|+.+..++... +..+++.+|.++...+.|++.+++. +...++.++.+|..+ ++
T Consensus 108 ~lL~~L~~-~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~a-Gl~~~I~li~GdA~e~L~~ 185 (278)
T PLN02476 108 QLLAMLVQ-ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELA-GVSHKVNVKHGLAAESLKS 185 (278)
T ss_pred HHHHHHHH-hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-CCCCcEEEEEcCHHHHHHH
Confidence 33444443 2356789999999999999998653 3467999999999999999988762 233578999998643 32
Q ss_pred C----CCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 157 L----KESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 157 ~----~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
+ .+++||+|+.-.. -.+....+..+.++|+||
T Consensus 186 l~~~~~~~~FD~VFIDa~---K~~Y~~y~e~~l~lL~~G 221 (278)
T PLN02476 186 MIQNGEGSSYDFAFVDAD---KRMYQDYFELLLQLVRVG 221 (278)
T ss_pred HHhcccCCCCCEEEECCC---HHHHHHHHHHHHHhcCCC
Confidence 1 2368999997643 124567788888888886
No 173
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.68 E-value=2.1e-07 Score=74.33 Aligned_cols=98 Identities=17% Similarity=0.161 Sum_probs=77.1
Q ss_pred CeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhcc--CCCCceeeEecCC-CCCCCCCCCcceEEeCC
Q 029554 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH--NDNIETCFVVGDE-EFLPLKESSLDLAISCL 169 (191)
Q Consensus 93 ~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~--~~~~~~~~~~~d~-~~l~~~~~~fDlVis~~ 169 (191)
.+||-||-|.|..++.+.+..+..++++||+++..++.+++-+..+. ...+++.++..|. +.+.-...+||+|++..
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 59999999999999999998889999999999999999999886532 1146788888884 34443334899999865
Q ss_pred cccCcC-----ChHHHHHHHHhccCCC
Q 029554 170 GLHWTN-----DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 170 ~l~~~~-----d~~~~l~~i~r~Lkpg 191 (191)
.=. .. .-..+++.++++|+||
T Consensus 158 tdp-~gp~~~Lft~eFy~~~~~~L~~~ 183 (282)
T COG0421 158 TDP-VGPAEALFTEEFYEGCRRALKED 183 (282)
T ss_pred CCC-CCcccccCCHHHHHHHHHhcCCC
Confidence 533 11 1268999999999985
No 174
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.68 E-value=2.7e-08 Score=78.25 Aligned_cols=89 Identities=21% Similarity=0.150 Sum_probs=72.8
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG 170 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~ 170 (191)
.+..+||+|||.|..+- ..|.+.++|+|.+...+..++.... ...+..|+..+|+.+.+||.+++..+
T Consensus 45 ~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~~~--------~~~~~ad~l~~p~~~~s~d~~lsiav 112 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRSGG--------DNVCRADALKLPFREESFDAALSIAV 112 (293)
T ss_pred CcceeeecccCCcccCc----CCCcceeeecchhhhhccccccCCC--------ceeehhhhhcCCCCCCccccchhhhh
Confidence 46789999999986552 2356789999999999888754321 15678899999999999999999999
Q ss_pred ccCcC---ChHHHHHHHHhccCCC
Q 029554 171 LHWTN---DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 171 l~~~~---d~~~~l~~i~r~Lkpg 191 (191)
+||+- ....+++++.++|+||
T Consensus 113 ihhlsT~~RR~~~l~e~~r~lrpg 136 (293)
T KOG1331|consen 113 IHHLSTRERRERALEELLRVLRPG 136 (293)
T ss_pred hhhhhhHHHHHHHHHHHHHHhcCC
Confidence 99984 3467999999999996
No 175
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.67 E-value=1e-07 Score=82.21 Aligned_cols=99 Identities=9% Similarity=-0.017 Sum_probs=81.1
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC--CCCCCCcceEEeC
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL--PLKESSLDLAISC 168 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l--~~~~~~fDlVis~ 168 (191)
....+||||||.|.++..++...|...++|+|++...+..+.++... ....++.++..|++.+ -++++++|.|+.+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~--~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGE--QNITNFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 45689999999999999999999999999999999988888777654 3445777887776532 2678899999999
Q ss_pred CcccCcCC--------hHHHHHHHHhccCCC
Q 029554 169 LGLHWTND--------LPGAMIQVSIFLLPD 191 (191)
Q Consensus 169 ~~l~~~~d--------~~~~l~~i~r~Lkpg 191 (191)
+-=-|... -+.++..+.++||||
T Consensus 425 FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~g 455 (506)
T PRK01544 425 FPDPWIKNKQKKKRIFNKERLKILQDKLKDN 455 (506)
T ss_pred CCCCCCCCCCccccccCHHHHHHHHHhcCCC
Confidence 98777542 357899999999997
No 176
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.66 E-value=2.6e-07 Score=67.40 Aligned_cols=106 Identities=19% Similarity=0.128 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC
Q 029554 77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL 155 (191)
Q Consensus 77 ~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l 155 (191)
+++.+...+. ...+.-|||+|.|||-++..+..++ +...++.+|.|++.+....+.... +.++.+|...+
T Consensus 36 lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~-------~~ii~gda~~l 106 (194)
T COG3963 36 LARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG-------VNIINGDAFDL 106 (194)
T ss_pred HHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC-------ccccccchhhH
Confidence 3444444444 3456679999999999999998775 467899999999999999887643 56788887655
Q ss_pred C-----CCCCCcceEEeCCcccCcC--ChHHHHHHHHhccCCC
Q 029554 156 P-----LKESSLDLAISCLGLHWTN--DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 156 ~-----~~~~~fDlVis~~~l~~~~--d~~~~l~~i~r~Lkpg 191 (191)
. +++..||.|||..-+-.++ -..+.+.++...|.+|
T Consensus 107 ~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~g 149 (194)
T COG3963 107 RTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAG 149 (194)
T ss_pred HHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCC
Confidence 3 6677899999987766654 2345677776666543
No 177
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.65 E-value=1.6e-07 Score=73.62 Aligned_cols=104 Identities=15% Similarity=0.047 Sum_probs=76.3
Q ss_pred HHHHHHHhcccCCCeEEEEcCCccHHHHHHhh-cCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC
Q 029554 80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG-RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK 158 (191)
Q Consensus 80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~-~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~ 158 (191)
-++..+. ..|+.+|||.|.|+|.++..|+. .+|..+|+..|+.++..+.|++.++.+ ....++.+...|+....|.
T Consensus 31 ~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~-gl~~~v~~~~~Dv~~~g~~ 107 (247)
T PF08704_consen 31 YILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH-GLDDNVTVHHRDVCEEGFD 107 (247)
T ss_dssp HHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT-TCCTTEEEEES-GGCG--S
T ss_pred HHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc-CCCCCceeEecceeccccc
Confidence 3444444 56899999999999999999985 467789999999999999999998763 2345789999997543332
Q ss_pred ---CCCcceEEeCCcccCcCChHHHHHHHHhcc-CCC
Q 029554 159 ---ESSLDLAISCLGLHWTNDLPGAMIQVSIFL-LPD 191 (191)
Q Consensus 159 ---~~~fDlVis~~~l~~~~d~~~~l~~i~r~L-kpg 191 (191)
+..+|.|+.- +++|..++..+.++| +||
T Consensus 108 ~~~~~~~DavfLD-----lp~Pw~~i~~~~~~L~~~g 139 (247)
T PF08704_consen 108 EELESDFDAVFLD-----LPDPWEAIPHAKRALKKPG 139 (247)
T ss_dssp TT-TTSEEEEEEE-----SSSGGGGHHHHHHHE-EEE
T ss_pred ccccCcccEEEEe-----CCCHHHHHHHHHHHHhcCC
Confidence 3679999854 568888999999999 665
No 178
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.62 E-value=1.4e-07 Score=75.86 Aligned_cols=89 Identities=22% Similarity=0.148 Sum_probs=68.9
Q ss_pred HHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC
Q 029554 78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP 156 (191)
Q Consensus 78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~ 156 (191)
..++++.+. ..++..+||.+||.|..+..+++.++ ..+|+|+|.++.+++.++++... ..++.++.+++..+.
T Consensus 8 l~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~----~~ri~~i~~~f~~l~ 81 (296)
T PRK00050 8 LDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP----FGRFTLVHGNFSNLK 81 (296)
T ss_pred HHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc----CCcEEEEeCCHHHHH
Confidence 445565655 45778999999999999999998764 57999999999999999887642 346889999877542
Q ss_pred --CCCC--CcceEEeCCccc
Q 029554 157 --LKES--SLDLAISCLGLH 172 (191)
Q Consensus 157 --~~~~--~fDlVis~~~l~ 172 (191)
.+++ ++|.|+..+++.
T Consensus 82 ~~l~~~~~~vDgIl~DLGvS 101 (296)
T PRK00050 82 EVLAEGLGKVDGILLDLGVS 101 (296)
T ss_pred HHHHcCCCccCEEEECCCcc
Confidence 1222 799999987653
No 179
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.62 E-value=4.6e-07 Score=76.91 Aligned_cols=98 Identities=16% Similarity=0.178 Sum_probs=67.4
Q ss_pred CCeEEEEcCCccHHHHHHhhcC----CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEe
Q 029554 92 FPTALCLGGSLEAVRRLLRGRG----GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAIS 167 (191)
Q Consensus 92 ~~~VLDlGcG~G~~~~~l~~~~----~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis 167 (191)
...|||||||+|.+.....+.+ ...+|+++|-|+.+....+++... .+-..+++++.+|++.+..+ .++|+|||
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~-n~w~~~V~vi~~d~r~v~lp-ekvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNA-NGWGDKVTVIHGDMREVELP-EKVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHH-TTTTTTEEEEES-TTTSCHS-S-EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHh-cCCCCeEEEEeCcccCCCCC-CceeEEEE
Confidence 4679999999999987665442 347999999999887776655332 12346799999999988765 48999999
Q ss_pred CC--cccCcCChHHHHHHHHhccCCC
Q 029554 168 CL--GLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 168 ~~--~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
-. ++-.-+-.+..|....+.||||
T Consensus 265 ElLGsfg~nEl~pE~Lda~~rfLkp~ 290 (448)
T PF05185_consen 265 ELLGSFGDNELSPECLDAADRFLKPD 290 (448)
T ss_dssp ---BTTBTTTSHHHHHHHGGGGEEEE
T ss_pred eccCCccccccCHHHHHHHHhhcCCC
Confidence 42 2222223567788888899875
No 180
>PLN02823 spermine synthase
Probab=98.61 E-value=5.3e-07 Score=73.87 Aligned_cols=101 Identities=17% Similarity=0.219 Sum_probs=74.0
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccC--CCCceeeEecCCC-CCCCCCCCcceEEe
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHN--DNIETCFVVGDEE-FLPLKESSLDLAIS 167 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~--~~~~~~~~~~d~~-~l~~~~~~fDlVis 167 (191)
.+.+||.+|+|.|.....+.+..+..+++++|+++.+++.|++.+..... ...++.++.+|.. .+....++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 35689999999999999888766668999999999999999987753111 2457888988854 34444578999998
Q ss_pred CCcccCcCC------hHHHHH-HHHhccCCC
Q 029554 168 CLGLHWTND------LPGAMI-QVSIFLLPD 191 (191)
Q Consensus 168 ~~~l~~~~d------~~~~l~-~i~r~Lkpg 191 (191)
-..=.+... -..+++ .+.++|+||
T Consensus 183 D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~ 213 (336)
T PLN02823 183 DLADPVEGGPCYQLYTKSFYERIVKPKLNPG 213 (336)
T ss_pred cCCCccccCcchhhccHHHHHHHHHHhcCCC
Confidence 742111001 235677 889999986
No 181
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.61 E-value=1.7e-07 Score=70.31 Aligned_cols=118 Identities=17% Similarity=0.078 Sum_probs=76.3
Q ss_pred CchHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCc---------eEEEEECChhHHHHHHHhhhhccC
Q 029554 70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIE---------KLIMMDTSYDMLKLCKDAQQDAHN 140 (191)
Q Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~---------~v~~vD~s~~~l~~a~~~~~~~~~ 140 (191)
...+...++.-|+.... ..++..|||--||+|.+....+..+... +++|.|+++.+++.++++.... +
T Consensus 9 ~a~L~~~lA~~ll~la~--~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~a-g 85 (179)
T PF01170_consen 9 PAPLRPTLAAALLNLAG--WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAA-G 85 (179)
T ss_dssp STSS-HHHHHHHHHHTT----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHT-T
T ss_pred CCCCCHHHHHHHHHHhC--CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhc-c
Confidence 34566677766775544 3467799999999999876554333223 3999999999999999988651 2
Q ss_pred CCCceeeEecCCCCCCCCCCCcceEEeCCcccC-cC---Ch----HHHHHHHHhccCC
Q 029554 141 DNIETCFVVGDEEFLPLKESSLDLAISCLGLHW-TN---DL----PGAMIQVSIFLLP 190 (191)
Q Consensus 141 ~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~-~~---d~----~~~l~~i~r~Lkp 190 (191)
....+.+.+.|+..+++.++++|.||+|--.-- +. +. ..+++++.++|++
T Consensus 86 ~~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 86 VEDYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp -CGGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred cCCceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 334588899999999877789999999843321 11 11 2456777777765
No 182
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.58 E-value=6.1e-07 Score=69.66 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=34.8
Q ss_pred cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHH
Q 029554 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKL 130 (191)
Q Consensus 90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~ 130 (191)
..+.+|||+|||||.++..+++.+ ..+|+++|+++.|+..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHH
Confidence 356689999999999999999874 5789999999988876
No 183
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.49 E-value=1.6e-06 Score=68.79 Aligned_cols=117 Identities=14% Similarity=0.044 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHhccc-CCCeEEEEcCCccHH----HHHHhhcCC-----CceEEEEECChhHHHHHHHhh-h-----h-
Q 029554 75 DAVAENLLDRLEDCRK-TFPTALCLGGSLEAV----RRLLRGRGG-----IEKLIMMDTSYDMLKLCKDAQ-Q-----D- 137 (191)
Q Consensus 75 ~~~~~~l~~~l~~~~~-~~~~VLDlGcG~G~~----~~~l~~~~~-----~~~v~~vD~s~~~l~~a~~~~-~-----~- 137 (191)
..+.+.++..+..... ..-+|+..||++|.- +..|.+.++ ..+++++|+|...++.|+.-. . +
T Consensus 79 ~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~ 158 (268)
T COG1352 79 EELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRG 158 (268)
T ss_pred HHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhcc
Confidence 3345555555543222 255899999999944 333344332 478999999999999997532 1 0
Q ss_pred -----------cc-CC--------CCceeeEecCCCCCCCCCCCcceEEeCCcccCcCC--hHHHHHHHHhccCCC
Q 029554 138 -----------AH-ND--------NIETCFVVGDEEFLPLKESSLDLAISCLGLHWTND--LPGAMIQVSIFLLPD 191 (191)
Q Consensus 138 -----------~~-~~--------~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d--~~~~l~~i~r~Lkpg 191 (191)
.. .. ...+.|...|+...++..+.||+|+|-++|-|++. ...++..++..|+||
T Consensus 159 ~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~g 234 (268)
T COG1352 159 LPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPG 234 (268)
T ss_pred CCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCC
Confidence 00 00 13467777886655535578999999999999964 457899999999987
No 184
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.48 E-value=1.5e-06 Score=72.47 Aligned_cols=94 Identities=14% Similarity=-0.019 Sum_probs=68.6
Q ss_pred CCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcc
Q 029554 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGL 171 (191)
Q Consensus 92 ~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l 171 (191)
..+|||++||+|..+..++...+..+|+++|+++..++.++++++. +...++.+...|+..+-...+.||+|+.+- .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~--N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~ 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLEL--NGLENEKVFNKDANALLHEERKFDVVDIDP-F 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH--hCCCceEEEhhhHHHHHhhcCCCCEEEECC-C
Confidence 4589999999999999997765456899999999999999988765 344456688888764321145799999853 1
Q ss_pred cCcCChHHHHHHHHhccCCC
Q 029554 172 HWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 172 ~~~~d~~~~l~~i~r~Lkpg 191 (191)
..+..++....+.++||
T Consensus 135 ---Gs~~~~l~~al~~~~~~ 151 (382)
T PRK04338 135 ---GSPAPFLDSAIRSVKRG 151 (382)
T ss_pred ---CCcHHHHHHHHHHhcCC
Confidence 34456666655555553
No 185
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.45 E-value=9e-07 Score=73.18 Aligned_cols=58 Identities=9% Similarity=-0.075 Sum_probs=49.8
Q ss_pred CeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC
Q 029554 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF 154 (191)
Q Consensus 93 ~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~ 154 (191)
.+|||++||+|.++..|++.. .+|+++|+++.+++.++++... +...++.++.+|++.
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~--~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAA--NNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHH--cCCCcEEEEEcCHHH
Confidence 479999999999999998876 6999999999999999998865 344568899998764
No 186
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.45 E-value=1.5e-06 Score=69.05 Aligned_cols=90 Identities=23% Similarity=0.246 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCC
Q 029554 73 FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE 152 (191)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~ 152 (191)
....+++.+++.+. ..++..|||+|+|+|.++..|.+.+ .+++++|+++.+.+..++++. ...++.++.+|+
T Consensus 14 ~~~~~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~----~~~~~~vi~~D~ 85 (262)
T PF00398_consen 14 VDPNIADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA----SNPNVEVINGDF 85 (262)
T ss_dssp EHHHHHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT----TCSSEEEEES-T
T ss_pred CCHHHHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh----hcccceeeecch
Confidence 35567778887776 3477899999999999999999988 999999999999999988763 456699999998
Q ss_pred CCCCCCC---CCcceEEeCCc
Q 029554 153 EFLPLKE---SSLDLAISCLG 170 (191)
Q Consensus 153 ~~l~~~~---~~fDlVis~~~ 170 (191)
..+.... ..-..|++|.-
T Consensus 86 l~~~~~~~~~~~~~~vv~NlP 106 (262)
T PF00398_consen 86 LKWDLYDLLKNQPLLVVGNLP 106 (262)
T ss_dssp TTSCGGGHCSSSEEEEEEEET
T ss_pred hccccHHhhcCCceEEEEEec
Confidence 8776543 35567887744
No 187
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.45 E-value=1.3e-06 Score=68.61 Aligned_cols=107 Identities=12% Similarity=-0.014 Sum_probs=76.7
Q ss_pred HHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CCC
Q 029554 80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LPL 157 (191)
Q Consensus 80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~~ 157 (191)
+++..+.. .....+|||||+++|+.+..++... +..+++.+|.++...+.|++.+... +...++.++.++..+ ++-
T Consensus 69 ~lL~~l~~-~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~a-g~~~~I~~~~G~a~e~L~~ 146 (247)
T PLN02589 69 QFLNMLLK-LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKA-GVAHKIDFREGPALPVLDQ 146 (247)
T ss_pred HHHHHHHH-HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHC-CCCCceEEEeccHHHHHHH
Confidence 44444443 2356789999999999999887653 4579999999999999999888752 234679999998543 321
Q ss_pred ------CCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 158 ------KESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 158 ------~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
..++||+|+.-.. -......+..+.+.|+||
T Consensus 147 l~~~~~~~~~fD~iFiDad---K~~Y~~y~~~~l~ll~~G 183 (247)
T PLN02589 147 MIEDGKYHGTFDFIFVDAD---KDNYINYHKRLIDLVKVG 183 (247)
T ss_pred HHhccccCCcccEEEecCC---HHHhHHHHHHHHHhcCCC
Confidence 1368999997543 123456677777888886
No 188
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.45 E-value=7.1e-07 Score=74.04 Aligned_cols=58 Identities=10% Similarity=-0.087 Sum_probs=49.6
Q ss_pred CeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC
Q 029554 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF 154 (191)
Q Consensus 93 ~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~ 154 (191)
.+|||++||+|.++..+++.. .+|+++|+++.+++.+++++.. +...++.++.+|+..
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~--~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAA--NGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHH--hCCCcEEEEECCHHH
Confidence 579999999999999998876 7999999999999999988765 334478899998754
No 189
>PRK00536 speE spermidine synthase; Provisional
Probab=98.41 E-value=4.8e-06 Score=65.85 Aligned_cols=110 Identities=12% Similarity=-0.006 Sum_probs=76.0
Q ss_pred CCchHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccC--CCCcee
Q 029554 69 PNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHN--DNIETC 146 (191)
Q Consensus 69 ~~~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~--~~~~~~ 146 (191)
..++.+.++..+.. .+. ...+.+||=+|.|.|...+.+.+.- .+|++||+++.+++.+++-++.+.. ..+++.
T Consensus 53 ~dEfiYHEmLvHpp-l~~--h~~pk~VLIiGGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~ 127 (262)
T PRK00536 53 NFLHIESELLAHMG-GCT--KKELKEVLIVDGFDLELAHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKNFT 127 (262)
T ss_pred chhhhHHHHHHHHH-Hhh--CCCCCeEEEEcCCchHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEE
Confidence 34555555543333 222 2245799999999999999999874 5999999999999999996654322 234455
Q ss_pred eEecCCCCCCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 147 FVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 147 ~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
++. .+.. ...++||+||+-.. ....+.+.+.++|+||
T Consensus 128 l~~-~~~~--~~~~~fDVIIvDs~-----~~~~fy~~~~~~L~~~ 164 (262)
T PRK00536 128 HAK-QLLD--LDIKKYDLIICLQE-----PDIHKIDGLKRMLKED 164 (262)
T ss_pred Eee-hhhh--ccCCcCCEEEEcCC-----CChHHHHHHHHhcCCC
Confidence 553 1111 12368999998743 3477889999999986
No 190
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.41 E-value=6.2e-06 Score=62.36 Aligned_cols=76 Identities=11% Similarity=-0.051 Sum_probs=57.0
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CC-C-CC-CCcceEE
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LP-L-KE-SSLDLAI 166 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~-~-~~-~~fDlVi 166 (191)
.+.+|||++||+|.++..+..++ ..+|+++|.++.+++.+++++... ....++.++.+|+.. +. + .. ..||+|+
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg-a~~v~~vE~~~~a~~~~~~N~~~~-~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~ 126 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG-AKVAFLEEDDRKANQTLKENLALL-KSGEQAEVVRNSALRALKFLAKKPTFDNVIY 126 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHh-CCcccEEEEehhHHHHHHHhhccCCCceEEE
Confidence 56789999999999999999887 358999999999999999887652 122357888888732 22 1 12 2478887
Q ss_pred eC
Q 029554 167 SC 168 (191)
Q Consensus 167 s~ 168 (191)
..
T Consensus 127 ~D 128 (189)
T TIGR00095 127 LD 128 (189)
T ss_pred EC
Confidence 64
No 191
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.39 E-value=4.9e-06 Score=58.73 Aligned_cols=92 Identities=30% Similarity=0.388 Sum_probs=63.6
Q ss_pred EEEEcCCccHHHHHHhhcCCC-ceEEEEECChhHHHHHHHhhhhccCCCCc-eeeEecCCCC--CCCCC-CCcceEEeCC
Q 029554 95 ALCLGGSLEAVRRLLRGRGGI-EKLIMMDTSYDMLKLCKDAQQDAHNDNIE-TCFVVGDEEF--LPLKE-SSLDLAISCL 169 (191)
Q Consensus 95 VLDlGcG~G~~~~~l~~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~~-~~~~~~d~~~--l~~~~-~~fDlVis~~ 169 (191)
++|+|||+|... .+....+. ..++++|+++.++...+.... ..... +.+...+... +++.. ..||++.+..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAE---GAGLGLVDFVVADALGGVLPFEDSASFDLVISLL 127 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhh---hcCCCceEEEEeccccCCCCCCCCCceeEEeeee
Confidence 999999999965 33332211 479999999999988544331 11111 5677777664 77776 4899994444
Q ss_pred cccCcCChHHHHHHHHhccCCC
Q 029554 170 GLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 170 ~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
.+++.. ....+.++.++|+|+
T Consensus 128 ~~~~~~-~~~~~~~~~~~l~~~ 148 (257)
T COG0500 128 VLHLLP-PAKALRELLRVLKPG 148 (257)
T ss_pred ehhcCC-HHHHHHHHHHhcCCC
Confidence 455554 888999999999874
No 192
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.38 E-value=8.1e-07 Score=73.35 Aligned_cols=101 Identities=15% Similarity=0.087 Sum_probs=83.1
Q ss_pred ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC
Q 029554 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC 168 (191)
Q Consensus 89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~ 168 (191)
..++..++|+|||.|.....+... ..+.++|+|.++..+.++....... ....+..++..|+..-|+++..||.|.+.
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f-~~~~~~Gl~~n~~e~~~~~~~~~~~-~l~~k~~~~~~~~~~~~fedn~fd~v~~l 185 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVF-KKAGVVGLDNNAYEAFRANELAKKA-YLDNKCNFVVADFGKMPFEDNTFDGVRFL 185 (364)
T ss_pred CcccccccccCcCcCchhHHHHHh-ccCCccCCCcCHHHHHHHHHHHHHH-HhhhhcceehhhhhcCCCCccccCcEEEE
Confidence 346668999999999999888654 3588999999998887776554321 12234555778899999999999999999
Q ss_pred CcccCcCChHHHHHHHHhccCCC
Q 029554 169 LGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 169 ~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
-+.+|.+++..++.|+.++++||
T Consensus 186 d~~~~~~~~~~~y~Ei~rv~kpG 208 (364)
T KOG1269|consen 186 EVVCHAPDLEKVYAEIYRVLKPG 208 (364)
T ss_pred eecccCCcHHHHHHHHhcccCCC
Confidence 99999999999999999999997
No 193
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=3.1e-06 Score=63.97 Aligned_cols=104 Identities=13% Similarity=0.027 Sum_probs=73.6
Q ss_pred HHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhc--CCCceEEEEECChhHHHHHHHhhhhccC--------CCCceeeE
Q 029554 79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR--GGIEKLIMMDTSYDMLKLCKDAQQDAHN--------DNIETCFV 148 (191)
Q Consensus 79 ~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~--~~~~~v~~vD~s~~~l~~a~~~~~~~~~--------~~~~~~~~ 148 (191)
..+++.|.....|+.+.||+|+|+|+++..+... .+....+|+|.-++.++.+++++..+-. ...+..++
T Consensus 70 a~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~iv 149 (237)
T KOG1661|consen 70 ATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIV 149 (237)
T ss_pred HHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEE
Confidence 3445555544568999999999999998877632 2235569999999999999998865321 12457888
Q ss_pred ecCCCCCCCCCCCcceEEeCCcccCcCChHHHHHHH
Q 029554 149 VGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQV 184 (191)
Q Consensus 149 ~~d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i 184 (191)
++|....-.+..+||.|.+..+..- .++..+.++
T Consensus 150 vGDgr~g~~e~a~YDaIhvGAaa~~--~pq~l~dqL 183 (237)
T KOG1661|consen 150 VGDGRKGYAEQAPYDAIHVGAAASE--LPQELLDQL 183 (237)
T ss_pred eCCccccCCccCCcceEEEccCccc--cHHHHHHhh
Confidence 9998777667789999999855432 234444443
No 194
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.34 E-value=1.1e-05 Score=65.28 Aligned_cols=97 Identities=18% Similarity=0.226 Sum_probs=69.8
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC-
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL- 169 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~- 169 (191)
.+..|||+|||.|.++...+..| .++|++++.| +|.+.|++-... ++...++.++.+-+|++.+| ++.|+||+--
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS-~MAqyA~~Lv~~-N~~~~rItVI~GKiEdieLP-Ek~DviISEPM 252 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEAS-EMAQYARKLVAS-NNLADRITVIPGKIEDIELP-EKVDVIISEPM 252 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC-cceEEEEehh-HHHHHHHHHHhc-CCccceEEEccCccccccCc-hhccEEEeccc
Confidence 45689999999999999888776 5789999976 477777776654 35567899999999988876 6799999842
Q ss_pred cccCcC-ChHHHHHHHHhccCCC
Q 029554 170 GLHWTN-DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 170 ~l~~~~-d~~~~l~~i~r~Lkpg 191 (191)
+..-++ ..-...-..++.|||.
T Consensus 253 G~mL~NERMLEsYl~Ark~l~P~ 275 (517)
T KOG1500|consen 253 GYMLVNERMLESYLHARKWLKPN 275 (517)
T ss_pred hhhhhhHHHHHHHHHHHhhcCCC
Confidence 211122 2233344455788873
No 195
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.34 E-value=2.4e-06 Score=67.23 Aligned_cols=101 Identities=18% Similarity=0.197 Sum_probs=71.8
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccC--CCCceeeEecCCC-CCCCCCC-CcceEE
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHN--DNIETCFVVGDEE-FLPLKES-SLDLAI 166 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~--~~~~~~~~~~d~~-~l~~~~~-~fDlVi 166 (191)
.+.+||-||.|.|.....+.+..+..++++||+++.+++.|++-+..... ...++.++..|.. .+.-... .||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 57799999999999999998876678999999999999999987654221 2457888888843 2322234 899999
Q ss_pred eCCcccCcCC----hHHHHHHHHhccCCC
Q 029554 167 SCLGLHWTND----LPGAMIQVSIFLLPD 191 (191)
Q Consensus 167 s~~~l~~~~d----~~~~l~~i~r~Lkpg 191 (191)
.-..-..... -..+++.+.++|+||
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~ 184 (246)
T PF01564_consen 156 VDLTDPDGPAPNLFTREFYQLCKRRLKPD 184 (246)
T ss_dssp EESSSTTSCGGGGSSHHHHHHHHHHEEEE
T ss_pred EeCCCCCCCcccccCHHHHHHHHhhcCCC
Confidence 8544322111 257889999999875
No 196
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.31 E-value=5.8e-06 Score=66.09 Aligned_cols=95 Identities=18% Similarity=0.102 Sum_probs=58.6
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCC-CCCCCCCCCcceEEeC
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE-EFLPLKESSLDLAISC 168 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~-~~l~~~~~~fDlVis~ 168 (191)
.+.+|||+|||+|..+-.+.+..+ ..+++++|.|+.|++.++.-.... ............. +..++. ..|+|+++
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~--~~DLvi~s 109 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG-PNNRNAEWRRVLYRDFLPFP--PDDLVIAS 109 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc-cccccchhhhhhhcccccCC--CCcEEEEe
Confidence 456899999999987666655432 578999999999999988765431 1111111111111 112222 33999999
Q ss_pred CcccCcCC--hHHHHHHHHhcc
Q 029554 169 LGLHWTND--LPGAMIQVSIFL 188 (191)
Q Consensus 169 ~~l~~~~d--~~~~l~~i~r~L 188 (191)
++|..+++ ...+++++.+.+
T Consensus 110 ~~L~EL~~~~r~~lv~~LW~~~ 131 (274)
T PF09243_consen 110 YVLNELPSAARAELVRSLWNKT 131 (274)
T ss_pred hhhhcCCchHHHHHHHHHHHhc
Confidence 99988876 223455544333
No 197
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.29 E-value=5e-06 Score=65.91 Aligned_cols=99 Identities=15% Similarity=0.126 Sum_probs=74.1
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhh---------------cc----------------
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD---------------AH---------------- 139 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~---------------~~---------------- 139 (191)
...+||--|||.|+++-.++..+ -.+.|.|.|--|+-...=.... +.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G--~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLG--YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhcc--ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 35689999999999999999987 8999999999996554321110 00
Q ss_pred -------CCCCceeeEecCCCCCCCCC---CCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 140 -------NDNIETCFVVGDEEFLPLKE---SSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 140 -------~~~~~~~~~~~d~~~l~~~~---~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
....++....+|+...-.++ ++||.|++++-+.-..+....+..|.++||||
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpg 195 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPG 195 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccC
Confidence 01224555566665543333 79999999988888888999999999999997
No 198
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=5.5e-06 Score=70.08 Aligned_cols=85 Identities=19% Similarity=0.140 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC
Q 029554 77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP 156 (191)
Q Consensus 77 ~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~ 156 (191)
+....++.+. ..+..++||+=||.|.++..|++.. .+|+|+|+++.+++.|+++++. +...++.|..++.+...
T Consensus 281 l~~~a~~~~~--~~~~~~vlDlYCGvG~f~l~lA~~~--~~V~gvEi~~~aV~~A~~NA~~--n~i~N~~f~~~~ae~~~ 354 (432)
T COG2265 281 LYETALEWLE--LAGGERVLDLYCGVGTFGLPLAKRV--KKVHGVEISPEAVEAAQENAAA--NGIDNVEFIAGDAEEFT 354 (432)
T ss_pred HHHHHHHHHh--hcCCCEEEEeccCCChhhhhhcccC--CEEEEEecCHHHHHHHHHHHHH--cCCCcEEEEeCCHHHHh
Confidence 3334444444 3456789999999999999999876 9999999999999999999876 66777999999987654
Q ss_pred CC---CCCcceEEe
Q 029554 157 LK---ESSLDLAIS 167 (191)
Q Consensus 157 ~~---~~~fDlVis 167 (191)
.. ...+|.|+.
T Consensus 355 ~~~~~~~~~d~Vvv 368 (432)
T COG2265 355 PAWWEGYKPDVVVV 368 (432)
T ss_pred hhccccCCCCEEEE
Confidence 22 347899986
No 199
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.27 E-value=2.4e-06 Score=65.29 Aligned_cols=110 Identities=16% Similarity=0.116 Sum_probs=63.2
Q ss_pred HHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhh-------ccCCCCceeeEecC
Q 029554 79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD-------AHNDNIETCFVVGD 151 (191)
Q Consensus 79 ~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~-------~~~~~~~~~~~~~d 151 (191)
..+++.+. ..+....+|||||.|......+-..+..+++|+|+.+...+.+++.... ++....++.+..+|
T Consensus 32 ~~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd 109 (205)
T PF08123_consen 32 SKILDELN--LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD 109 (205)
T ss_dssp HHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred HHHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence 34555554 4467899999999999877666554567799999999988777653322 22334567778888
Q ss_pred CCCCCCCC---CCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 152 EEFLPLKE---SSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 152 ~~~l~~~~---~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
+...++.. ...|+|++|..+- -+++...+.++..-||||
T Consensus 110 fl~~~~~~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G 151 (205)
T PF08123_consen 110 FLDPDFVKDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPG 151 (205)
T ss_dssp TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT
T ss_pred ccccHhHhhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCC
Confidence 65432111 3469999987642 335556667777777776
No 200
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.25 E-value=9.6e-06 Score=66.02 Aligned_cols=113 Identities=17% Similarity=0.075 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEec-C
Q 029554 73 FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVG-D 151 (191)
Q Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~-d 151 (191)
+...++.-++.... .+++..|||==||||.+.....-.| .+++|+|++..|+.-++.+++. -......+... |
T Consensus 181 ~~P~lAR~mVNLa~--v~~G~~vlDPFcGTGgiLiEagl~G--~~viG~Did~~mv~gak~Nl~~--y~i~~~~~~~~~D 254 (347)
T COG1041 181 MDPRLARAMVNLAR--VKRGELVLDPFCGTGGILIEAGLMG--ARVIGSDIDERMVRGAKINLEY--YGIEDYPVLKVLD 254 (347)
T ss_pred cCHHHHHHHHHHhc--cccCCEeecCcCCccHHHHhhhhcC--ceEeecchHHHHHhhhhhhhhh--hCcCceeEEEecc
Confidence 44455544553333 4578899999999999998887777 9999999999999999998875 22344545555 9
Q ss_pred CCCCCCCCCCcceEEeCC--c----ccCc--CC-hHHHHHHHHhccCCC
Q 029554 152 EEFLPLKESSLDLAISCL--G----LHWT--ND-LPGAMIQVSIFLLPD 191 (191)
Q Consensus 152 ~~~l~~~~~~fDlVis~~--~----l~~~--~d-~~~~l~~i~r~Lkpg 191 (191)
+..+|+++.++|.|++-- + ..-. ++ ...++..+.++|++|
T Consensus 255 a~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~g 303 (347)
T COG1041 255 ATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPG 303 (347)
T ss_pred cccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcC
Confidence 999999988899999832 1 1111 12 356888999999885
No 201
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.24 E-value=3.5e-06 Score=64.15 Aligned_cols=96 Identities=14% Similarity=0.047 Sum_probs=62.5
Q ss_pred ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC
Q 029554 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC 168 (191)
Q Consensus 89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~ 168 (191)
..++..|||+-||-|.++..+++....+.|+++|++|..++.+++.... ++....+..+.+|...+.. .+.||-|+++
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~l-Nkv~~~i~~~~~D~~~~~~-~~~~drvim~ 176 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRL-NKVENRIEVINGDAREFLP-EGKFDRVIMN 176 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHH-TT-TTTEEEEES-GGG----TT-EEEEEE-
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHH-cCCCCeEEEEcCCHHHhcC-ccccCEEEEC
Confidence 4478899999999999999999855558999999999999999888765 2233457888999877654 6889999987
Q ss_pred CcccCcCChHHHHHHHHhccCC
Q 029554 169 LGLHWTNDLPGAMIQVSIFLLP 190 (191)
Q Consensus 169 ~~l~~~~d~~~~l~~i~r~Lkp 190 (191)
.--. ...++..+.+++++
T Consensus 177 lp~~----~~~fl~~~~~~~~~ 194 (200)
T PF02475_consen 177 LPES----SLEFLDAALSLLKE 194 (200)
T ss_dssp -TSS----GGGGHHHHHHHEEE
T ss_pred ChHH----HHHHHHHHHHHhcC
Confidence 5322 12344555555543
No 202
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.23 E-value=1.8e-05 Score=56.90 Aligned_cols=85 Identities=20% Similarity=0.222 Sum_probs=60.2
Q ss_pred cCCCeEEEEcCCccHHHHHHhh-----cCCCceEEEEECChhHHHHHHHhhhhccCCC-CceeeEecCCCCCCCCCCCcc
Q 029554 90 KTFPTALCLGGSLEAVRRLLRG-----RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN-IETCFVVGDEEFLPLKESSLD 163 (191)
Q Consensus 90 ~~~~~VLDlGcG~G~~~~~l~~-----~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~-~~~~~~~~d~~~l~~~~~~fD 163 (191)
.+..+|+|+|||.|+++..|+. . +..+|+++|.++..++.+.++...+.... .+..+...+....+ .....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence 4567899999999999999987 4 56899999999999999988876533222 44555655544332 134566
Q ss_pred eEEeCCcccCcCChHH
Q 029554 164 LAISCLGLHWTNDLPG 179 (191)
Q Consensus 164 lVis~~~l~~~~d~~~ 179 (191)
+++. ||-..|+..
T Consensus 102 ~~vg---LHaCG~Ls~ 114 (141)
T PF13679_consen 102 ILVG---LHACGDLSD 114 (141)
T ss_pred EEEE---eecccchHH
Confidence 6664 666666643
No 203
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.23 E-value=8.4e-06 Score=61.29 Aligned_cols=93 Identities=13% Similarity=0.038 Sum_probs=65.6
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG 170 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~ 170 (191)
...+|+|+|+|.|.=+..|+=..|..+++.+|.+..-+...+.-.... .-.++.++...++. +.....||+|++..+
T Consensus 48 ~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L--~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv 124 (184)
T PF02527_consen 48 FGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVREL--GLSNVEVINGRAEE-PEYRESFDVVTARAV 124 (184)
T ss_dssp CCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHH--T-SSEEEEES-HHH-TTTTT-EEEEEEESS
T ss_pred CCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHh--CCCCEEEEEeeecc-cccCCCccEEEeehh
Confidence 333899999999988888877778899999999998666665544431 23468889988887 445688999998765
Q ss_pred ccCcCChHHHHHHHHhccCC
Q 029554 171 LHWTNDLPGAMIQVSIFLLP 190 (191)
Q Consensus 171 l~~~~d~~~~l~~i~r~Lkp 190 (191)
- .+...+.-+...|++
T Consensus 125 ~----~l~~l~~~~~~~l~~ 140 (184)
T PF02527_consen 125 A----PLDKLLELARPLLKP 140 (184)
T ss_dssp S----SHHHHHHHHGGGEEE
T ss_pred c----CHHHHHHHHHHhcCC
Confidence 3 455666666666655
No 204
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.19 E-value=7.6e-06 Score=67.68 Aligned_cols=58 Identities=17% Similarity=0.143 Sum_probs=46.1
Q ss_pred CeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC
Q 029554 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF 154 (191)
Q Consensus 93 ~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~ 154 (191)
.+|||+=||.|.++..|++.+ .+|+|+|+++.+++.|++++.. +...++.|+.++.+.
T Consensus 198 ~~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~--N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKL--NGIDNVEFIRGDAED 255 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHH--TT--SEEEEE--SHH
T ss_pred CcEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHH--cCCCcceEEEeeccc
Confidence 379999999999999999987 8999999999999999998876 666788998876543
No 205
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.19 E-value=1.8e-06 Score=66.30 Aligned_cols=101 Identities=17% Similarity=0.065 Sum_probs=72.3
Q ss_pred ccCCCeEEEEcCCccHHHHHHhhcCCCc-eEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC--CCCCCCcceE
Q 029554 89 RKTFPTALCLGGSLEAVRRLLRGRGGIE-KLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL--PLKESSLDLA 165 (191)
Q Consensus 89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l--~~~~~~fDlV 165 (191)
.+.+.+|||.+.|.|+.+....+++ + +|+.++.++..++.|.-+-=...-....+.++.+|..+. .|++.+||+|
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rG--A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaI 209 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERG--AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAI 209 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcC--CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceE
Confidence 3468899999999999999888888 6 999999999999888543211011123578899996542 4788999999
Q ss_pred EeC---CcccCcCChHHHHHHHHhccCCC
Q 029554 166 ISC---LGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 166 is~---~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
|-. +++.----...+.+|+.|+||||
T Consensus 210 iHDPPRfS~AgeLYseefY~El~RiLkrg 238 (287)
T COG2521 210 IHDPPRFSLAGELYSEEFYRELYRILKRG 238 (287)
T ss_pred eeCCCccchhhhHhHHHHHHHHHHHcCcC
Confidence 742 12111001346899999999997
No 206
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.18 E-value=1.5e-05 Score=64.90 Aligned_cols=84 Identities=17% Similarity=0.096 Sum_probs=58.6
Q ss_pred cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC-CCCCCCCCcceEEeC
Q 029554 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE-FLPLKESSLDLAISC 168 (191)
Q Consensus 90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~-~l~~~~~~fDlVis~ 168 (191)
.++.++|||||++|.++..|.+++ .+|++||..+ |-... ....++.....|.. ..| +.+.+|+|+|-
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG--~~V~AVD~g~-l~~~L--------~~~~~V~h~~~d~fr~~p-~~~~vDwvVcD 277 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRG--MFVTAVDNGP-MAQSL--------MDTGQVEHLRADGFKFRP-PRKNVDWLVCD 277 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcC--CEEEEEechh-cCHhh--------hCCCCEEEEeccCcccCC-CCCCCCEEEEe
Confidence 477899999999999999999988 7999999554 22222 13445777777743 443 36789999997
Q ss_pred CcccCcCChHHHHHHHHhccC
Q 029554 169 LGLHWTNDLPGAMIQVSIFLL 189 (191)
Q Consensus 169 ~~l~~~~d~~~~l~~i~r~Lk 189 (191)
.+.. |..+..-+.+.|.
T Consensus 278 mve~----P~rva~lm~~Wl~ 294 (357)
T PRK11760 278 MVEK----PARVAELMAQWLV 294 (357)
T ss_pred cccC----HHHHHHHHHHHHh
Confidence 6633 4555555555543
No 207
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.11 E-value=4.9e-07 Score=68.23 Aligned_cols=86 Identities=21% Similarity=0.189 Sum_probs=68.8
Q ss_pred CCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcc
Q 029554 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGL 171 (191)
Q Consensus 92 ~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l 171 (191)
+.++||+|+|.|..+..++..+ .+|.+++.|..|..+.+++.-. +.+..+.+. .+-+||+|.|-..|
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~kk~yn----------Vl~~~ew~~-t~~k~dli~clNlL 179 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKKKNYN----------VLTEIEWLQ-TDVKLDLILCLNLL 179 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhhcCCc----------eeeehhhhh-cCceeehHHHHHHH
Confidence 4589999999999999999877 8999999999999998765311 112223222 23469999999999
Q ss_pred cCcCChHHHHHHHHhccCC
Q 029554 172 HWTNDLPGAMIQVSIFLLP 190 (191)
Q Consensus 172 ~~~~d~~~~l~~i~r~Lkp 190 (191)
.-..|+...+..|..+|+|
T Consensus 180 DRc~~p~kLL~Di~~vl~p 198 (288)
T KOG3987|consen 180 DRCFDPFKLLEDIHLVLAP 198 (288)
T ss_pred HhhcChHHHHHHHHHHhcc
Confidence 8888999999999999987
No 208
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.11 E-value=4.1e-06 Score=61.59 Aligned_cols=72 Identities=18% Similarity=0.116 Sum_probs=51.2
Q ss_pred eEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC-C-CCCCC-cceEEeC
Q 029554 94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-P-LKESS-LDLAISC 168 (191)
Q Consensus 94 ~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l-~-~~~~~-fDlVis~ 168 (191)
.|+|+.||.|..+..++..+ .+|+++|+++..++.++.++.- .....++.++++|...+ + +.... ||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~v-YGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEV-YGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHH-TT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHH-cCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 58999999999999999987 8999999999999999988764 12356799999996543 1 22222 8999864
No 209
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.09 E-value=9.2e-06 Score=67.68 Aligned_cols=100 Identities=18% Similarity=0.093 Sum_probs=74.4
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC-CCC---CCCCCcceEE
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE-FLP---LKESSLDLAI 166 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~-~l~---~~~~~fDlVi 166 (191)
.+.+||++=|=||.++...+..| ..+|+.||.|...++.|+++++..+-...+..++++|+- .+. -...+||+||
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 38899999999999999888766 349999999999999999998762223456889999954 332 2335899999
Q ss_pred eC---C-----cc-cCcCChHHHHHHHHhccCCC
Q 029554 167 SC---L-----GL-HWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 167 s~---~-----~l-~~~~d~~~~l~~i~r~Lkpg 191 (191)
.- + .. .-..|....+..+.++|+||
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pg 329 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPG 329 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCC
Confidence 72 1 11 11235667788888888886
No 210
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.09 E-value=2.5e-05 Score=63.47 Aligned_cols=88 Identities=16% Similarity=0.015 Sum_probs=68.9
Q ss_pred CeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCccc
Q 029554 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLH 172 (191)
Q Consensus 93 ~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~ 172 (191)
...+|+|.|.|..+..+...+ .++-++++....+..++... . ..+..+.+|.-+. .|. -|+||+..+||
T Consensus 179 ~~avDvGgGiG~v~k~ll~~f--p~ik~infdlp~v~~~a~~~-----~-~gV~~v~gdmfq~-~P~--~daI~mkWiLh 247 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKY--PHIKGINFDLPFVLAAAPYL-----A-PGVEHVAGDMFQD-TPK--GDAIWMKWILH 247 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhC--CCCceeecCHHHHHhhhhhh-----c-CCcceeccccccc-CCC--cCeEEEEeecc
Confidence 578999999999999998877 56888888887776665544 1 2377788885543 333 36999999999
Q ss_pred CcCC--hHHHHHHHHhccCCC
Q 029554 173 WTND--LPGAMIQVSIFLLPD 191 (191)
Q Consensus 173 ~~~d--~~~~l~~i~r~Lkpg 191 (191)
|+.| ...+|+++...|+||
T Consensus 248 dwtDedcvkiLknC~~sL~~~ 268 (342)
T KOG3178|consen 248 DWTDEDCVKILKNCKKSLPPG 268 (342)
T ss_pred cCChHHHHHHHHHHHHhCCCC
Confidence 9864 678999999999986
No 211
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.08 E-value=2.8e-05 Score=64.16 Aligned_cols=102 Identities=11% Similarity=-0.121 Sum_probs=78.1
Q ss_pred hhcCCCchHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCC------------------------------
Q 029554 65 WLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG------------------------------ 114 (191)
Q Consensus 65 ~~y~~~~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~------------------------------ 114 (191)
..|+....++..++..++.+..+ .++..++|--||+|.+....+-.++
T Consensus 167 R~~~g~ApLketLAaAil~lagw--~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea 244 (381)
T COG0116 167 RVYDGPAPLKETLAAAILLLAGW--KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEA 244 (381)
T ss_pred cccCCCCCchHHHHHHHHHHcCC--CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHH
Confidence 34566788999999888866664 3446899999999998776554331
Q ss_pred --Cc-------eEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554 115 --IE-------KLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL 169 (191)
Q Consensus 115 --~~-------~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~ 169 (191)
.. .++|+|+++.+++.|+.++.. ....+.+.|.+.|+..++.+...+|+||||-
T Consensus 245 ~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~-AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NP 307 (381)
T COG0116 245 EERARRGKELPIIYGSDIDPRHIEGAKANARA-AGVGDLIEFKQADATDLKEPLEEYGVVISNP 307 (381)
T ss_pred HHHHhhcCccceEEEecCCHHHHHHHHHHHHh-cCCCceEEEEEcchhhCCCCCCcCCEEEeCC
Confidence 01 378999999999999998865 2345679999999998864447899999984
No 212
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.08 E-value=0.00014 Score=57.93 Aligned_cols=100 Identities=13% Similarity=-0.015 Sum_probs=75.2
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCC--ceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC---CCCCCCCcceE
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGI--EKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF---LPLKESSLDLA 165 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~---l~~~~~~fDlV 165 (191)
.+-+||||.||.|.-........|. .++...|.|+.-++..++.+++ .+....++|.++|+-. +.--+...+++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~-~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAE-RGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHH-cCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 4558999999999877666555554 7899999999999999988765 1223335999988542 22123457999
Q ss_pred EeCCcccCcCC---hHHHHHHHHhccCCC
Q 029554 166 ISCLGLHWTND---LPGAMIQVSIFLLPD 191 (191)
Q Consensus 166 is~~~l~~~~d---~~~~l~~i~r~Lkpg 191 (191)
|.+.....++| ....+..+.+++.||
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pg 242 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPG 242 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCC
Confidence 99999999987 345788999999886
No 213
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.07 E-value=1.4e-05 Score=57.20 Aligned_cols=56 Identities=9% Similarity=0.191 Sum_probs=44.7
Q ss_pred eEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecC
Q 029554 94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGD 151 (191)
Q Consensus 94 ~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d 151 (191)
+|||+|||.|..+..+...++..+++++|+++.+.+.+++.... +...++.++...
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~--n~~~~v~~~~~a 56 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKL--NNLPNVVLLNAA 56 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHH--cCCCcEEEEEee
Confidence 48999999999999999888777999999999999999888754 222335555543
No 214
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.06 E-value=0.00012 Score=59.67 Aligned_cols=101 Identities=11% Similarity=-0.029 Sum_probs=67.7
Q ss_pred CCCeEEEEcCCccHHHHHHhhc----CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC----CCC--CCC
Q 029554 91 TFPTALCLGGSLEAVRRLLRGR----GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF----LPL--KES 160 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~----~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~----l~~--~~~ 160 (191)
++..|+|+|||.|.=+..|.+. .....|+.+|+|..+++.+.++.....-....+.-+++|... ++- ...
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence 5568999999999877665443 234679999999999999988876201112334447777643 321 123
Q ss_pred CcceEEeC-CcccCcCCh--HHHHHHHHh-ccCCC
Q 029554 161 SLDLAISC-LGLHWTNDL--PGAMIQVSI-FLLPD 191 (191)
Q Consensus 161 ~fDlVis~-~~l~~~~d~--~~~l~~i~r-~Lkpg 191 (191)
...+|+.- .++..++.. ..+|+++++ +|+||
T Consensus 156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~ 190 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPS 190 (319)
T ss_pred CccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCC
Confidence 35666654 467777543 468999999 99885
No 215
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=6.1e-05 Score=55.88 Aligned_cols=74 Identities=16% Similarity=0.112 Sum_probs=55.7
Q ss_pred CCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC-CCCCCCCCcceEEeC
Q 029554 91 TFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE-FLPLKESSLDLAISC 168 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~-~l~~~~~~fDlVis~ 168 (191)
...-+||||||+|..+..|++. +|...+.++|+++..++...+.+.. ...++..++.|+. .+. .++.|+++-|
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~---n~~~~~~V~tdl~~~l~--~~~VDvLvfN 117 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARC---NRVHIDVVRTDLLSGLR--NESVDVLVFN 117 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHh---cCCccceeehhHHhhhc--cCCccEEEEC
Confidence 3567999999999999988765 5678899999999999887776653 2334677777754 343 2788888876
Q ss_pred C
Q 029554 169 L 169 (191)
Q Consensus 169 ~ 169 (191)
-
T Consensus 118 P 118 (209)
T KOG3191|consen 118 P 118 (209)
T ss_pred C
Confidence 3
No 216
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.00 E-value=7.8e-05 Score=63.79 Aligned_cols=101 Identities=8% Similarity=-0.019 Sum_probs=72.3
Q ss_pred ccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-CCCCCcceEE
Q 029554 89 RKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-LKESSLDLAI 166 (191)
Q Consensus 89 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-~~~~~fDlVi 166 (191)
..++.+|||++||+|.=+..++... ....++++|+++.-+...++++.++ ...++.+...|...++ ...+.||.|+
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~--G~~nv~v~~~D~~~~~~~~~~~fD~IL 188 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRC--GVSNVALTHFDGRVFGAALPETFDAIL 188 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc--CCCeEEEEeCchhhhhhhchhhcCeEE
Confidence 4578899999999999988887753 3358999999999999999888763 3345777777766542 2236799999
Q ss_pred e----CC--cccCcCC----------------hHHHHHHHHhccCCC
Q 029554 167 S----CL--GLHWTND----------------LPGAMIQVSIFLLPD 191 (191)
Q Consensus 167 s----~~--~l~~~~d----------------~~~~l~~i~r~Lkpg 191 (191)
. +. ++..-++ ...+|.+..+.||||
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpG 235 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPG 235 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4 32 2222111 145778888889886
No 217
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.99 E-value=1.4e-05 Score=60.07 Aligned_cols=104 Identities=15% Similarity=0.103 Sum_probs=64.7
Q ss_pred HHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC-CCC-
Q 029554 79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE-FLP- 156 (191)
Q Consensus 79 ~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~-~l~- 156 (191)
+.+...+......+.+|||+=||+|.++.....+| ..+|+.||.++..+...+++.... +...++.++..|.. .++
T Consensus 30 ealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l-~~~~~~~v~~~d~~~~l~~ 107 (183)
T PF03602_consen 30 EALFNILQPRNLEGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKL-GLEDKIRVIKGDAFKFLLK 107 (183)
T ss_dssp HHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHH-T-GGGEEEEESSHHHHHHH
T ss_pred HHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHh-CCCcceeeeccCHHHHHHh
Confidence 34444444311367899999999999998777776 579999999999999999988752 22335777888843 332
Q ss_pred --CCCCCcceEEeCCcccCcCC-hHHHHHHHH
Q 029554 157 --LKESSLDLAISCLGLHWTND-LPGAMIQVS 185 (191)
Q Consensus 157 --~~~~~fDlVis~~~l~~~~d-~~~~l~~i~ 185 (191)
-...+||+|+..=-... .. ...++..+.
T Consensus 108 ~~~~~~~fDiIflDPPY~~-~~~~~~~l~~l~ 138 (183)
T PF03602_consen 108 LAKKGEKFDIIFLDPPYAK-GLYYEELLELLA 138 (183)
T ss_dssp HHHCTS-EEEEEE--STTS-CHHHHHHHHHHH
T ss_pred hcccCCCceEEEECCCccc-chHHHHHHHHHH
Confidence 24578999997522111 11 255666555
No 218
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.97 E-value=7.1e-05 Score=63.28 Aligned_cols=97 Identities=22% Similarity=0.208 Sum_probs=78.1
Q ss_pred CCC-eEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554 91 TFP-TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL 169 (191)
Q Consensus 91 ~~~-~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~ 169 (191)
+.. ++|-+|||...+...+-+.+ ...++-+|+|+..++....+... ......+...|...+.|++.+||+|+--.
T Consensus 47 p~~~~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~---~~~~~~~~~~d~~~l~fedESFdiVIdkG 122 (482)
T KOG2352|consen 47 PSDFKILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAK---ERPEMQMVEMDMDQLVFEDESFDIVIDKG 122 (482)
T ss_pred hhhceeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhcccc---CCcceEEEEecchhccCCCcceeEEEecC
Confidence 444 89999999999999887764 68899999999988887665422 34458889999999999999999999999
Q ss_pred cccCcC-C---------hHHHHHHHHhccCCC
Q 029554 170 GLHWTN-D---------LPGAMIQVSIFLLPD 191 (191)
Q Consensus 170 ~l~~~~-d---------~~~~l~~i~r~Lkpg 191 (191)
.++++- | ....+.++.++|+||
T Consensus 123 tlDal~~de~a~~~~~~v~~~~~eVsrvl~~~ 154 (482)
T KOG2352|consen 123 TLDALFEDEDALLNTAHVSNMLDEVSRVLAPG 154 (482)
T ss_pred ccccccCCchhhhhhHHhhHHHhhHHHHhccC
Confidence 988762 1 224578888988875
No 219
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.94 E-value=5.1e-05 Score=68.22 Aligned_cols=98 Identities=14% Similarity=-0.050 Sum_probs=70.8
Q ss_pred CchHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhc------------C------------------------
Q 029554 70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR------------G------------------------ 113 (191)
Q Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~------------~------------------------ 113 (191)
...++..++..++..... ..++..++|-+||+|.+....+.. +
T Consensus 170 ~Apl~etlAaa~l~~a~w-~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~ 248 (702)
T PRK11783 170 EAPLKENLAAAILLRSGW-PQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERA 248 (702)
T ss_pred CCCCcHHHHHHHHHHcCC-CCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence 456778888888855443 235678999999999887654321 0
Q ss_pred ------CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC--CCCcceEEeCC
Q 029554 114 ------GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK--ESSLDLAISCL 169 (191)
Q Consensus 114 ------~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~--~~~fDlVis~~ 169 (191)
...+++|+|+++.+++.|++++... +....+.+.++|+..++.+ .++||+|++|-
T Consensus 249 ~~~~~~~~~~i~G~Did~~av~~A~~N~~~~-g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNP 311 (702)
T PRK11783 249 RAGLAELPSKFYGSDIDPRVIQAARKNARRA-GVAELITFEVKDVADLKNPLPKGPTGLVISNP 311 (702)
T ss_pred hhcccccCceEEEEECCHHHHHHHHHHHHHc-CCCcceEEEeCChhhcccccccCCCCEEEECC
Confidence 0136999999999999999988651 2234578899998776543 35799999983
No 220
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.89 E-value=1e-05 Score=60.53 Aligned_cols=36 Identities=22% Similarity=0.184 Sum_probs=30.9
Q ss_pred CCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChh
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYD 126 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~ 126 (191)
...+|||+||++|.++..+..++ +..+|+++|+.+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 34799999999999999998876 5789999999876
No 221
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.86 E-value=9.1e-05 Score=57.81 Aligned_cols=81 Identities=15% Similarity=0.026 Sum_probs=58.3
Q ss_pred cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL 169 (191)
Q Consensus 90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~ 169 (191)
.+..+|+|||||.-.++..+....+...|++.|++..+++....-... ......+...|....+ +....|+.+.--
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~---l~~~~~~~v~Dl~~~~-~~~~~DlaLllK 179 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAV---LGVPHDARVRDLLSDP-PKEPADLALLLK 179 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHH---TT-CEEEEEE-TTTSH-TTSEESEEEEET
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHh---hCCCcceeEeeeeccC-CCCCcchhhHHH
Confidence 347799999999999999888777778999999999999998776654 3445677777866554 346799998877
Q ss_pred cccCc
Q 029554 170 GLHWT 174 (191)
Q Consensus 170 ~l~~~ 174 (191)
+++-+
T Consensus 180 ~lp~l 184 (251)
T PF07091_consen 180 TLPCL 184 (251)
T ss_dssp -HHHH
T ss_pred HHHHH
Confidence 76655
No 222
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.86 E-value=9.1e-05 Score=59.83 Aligned_cols=90 Identities=13% Similarity=0.112 Sum_probs=68.7
Q ss_pred HHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-
Q 029554 78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP- 156 (191)
Q Consensus 78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~- 156 (191)
.+++++.+. ..+++.++|.-+|.|..+..+.+..+..+|+|+|.++.+++.++++... ...++.++.+++..+.
T Consensus 9 l~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~---~~~R~~~i~~nF~~l~~ 83 (305)
T TIGR00006 9 LDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD---FEGRVVLIHDNFANFFE 83 (305)
T ss_pred HHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh---cCCcEEEEeCCHHHHHH
Confidence 445555554 4577899999999999999998876558999999999999999988753 2346888888876532
Q ss_pred ----CCCCCcceEEeCCccc
Q 029554 157 ----LKESSLDLAISCLGLH 172 (191)
Q Consensus 157 ----~~~~~fDlVis~~~l~ 172 (191)
....++|.|+..+++.
T Consensus 84 ~l~~~~~~~vDgIl~DLGvS 103 (305)
T TIGR00006 84 HLDELLVTKIDGILVDLGVS 103 (305)
T ss_pred HHHhcCCCcccEEEEeccCC
Confidence 2335799999987654
No 223
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.84 E-value=2.8e-05 Score=59.32 Aligned_cols=79 Identities=18% Similarity=0.133 Sum_probs=58.2
Q ss_pred CeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC---CCCCcceEEeCC
Q 029554 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL---KESSLDLAISCL 169 (191)
Q Consensus 93 ~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~---~~~~fDlVis~~ 169 (191)
-++|||||=...+...-.. .-.|+.+|+++.- -.+.+.|+...|. +++.||+|++++
T Consensus 53 lrlLEVGals~~N~~s~~~---~fdvt~IDLns~~-----------------~~I~qqDFm~rplp~~~~e~FdvIs~SL 112 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSG---WFDVTRIDLNSQH-----------------PGILQQDFMERPLPKNESEKFDVISLSL 112 (219)
T ss_pred ceEEeecccCCCCcccccC---ceeeEEeecCCCC-----------------CCceeeccccCCCCCCcccceeEEEEEE
Confidence 5899999975554433222 3469999997621 3446677776654 357899999999
Q ss_pred cccCcCChH---HHHHHHHhccCCC
Q 029554 170 GLHWTNDLP---GAMIQVSIFLLPD 191 (191)
Q Consensus 170 ~l~~~~d~~---~~l~~i~r~Lkpg 191 (191)
+|.+++++. ..+.++.+.|+|+
T Consensus 113 VLNfVP~p~~RG~Ml~r~~~fL~~~ 137 (219)
T PF11968_consen 113 VLNFVPDPKQRGEMLRRAHKFLKPP 137 (219)
T ss_pred EEeeCCCHHHHHHHHHHHHHHhCCC
Confidence 999999875 5789999999874
No 224
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.81 E-value=6.6e-05 Score=60.91 Aligned_cols=81 Identities=12% Similarity=-0.058 Sum_probs=50.3
Q ss_pred ccCCCeEEEEcCCccHHHHHHhhc-------CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-CC-C
Q 029554 89 RKTFPTALCLGGSLEAVRRLLRGR-------GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-LK-E 159 (191)
Q Consensus 89 ~~~~~~VLDlGcG~G~~~~~l~~~-------~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-~~-~ 159 (191)
..++.+|||-+||+|.+...+... ....+++|+|+++.++..++-+..-.+.......+..+|....+ .. .
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 445668999999999998776652 24578999999999998887654321111222346777754333 22 4
Q ss_pred CCcceEEeCC
Q 029554 160 SSLDLAISCL 169 (191)
Q Consensus 160 ~~fDlVis~~ 169 (191)
..||+|++|-
T Consensus 124 ~~~D~ii~NP 133 (311)
T PF02384_consen 124 QKFDVIIGNP 133 (311)
T ss_dssp --EEEEEEE-
T ss_pred cccccccCCC
Confidence 7899999973
No 225
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.72 E-value=5e-05 Score=60.87 Aligned_cols=100 Identities=19% Similarity=0.142 Sum_probs=66.6
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CC--CCCCCcceEEe
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LP--LKESSLDLAIS 167 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~--~~~~~fDlVis 167 (191)
.+.+|||+=|=||.++...+..+ ..+|+.||.|..+++.+++++...+-...++.+++.|+.. +. -..+.||+||+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 46799999999999998776644 4689999999999999999887522223578899988542 32 12468999997
Q ss_pred C---Cc---ccCcCChHHHHHHHHhccCCC
Q 029554 168 C---LG---LHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 168 ~---~~---l~~~~d~~~~l~~i~r~Lkpg 191 (191)
. ++ ..-..+....+..+.++|+||
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~g 231 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPG 231 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 3 11 111124556677777777764
No 226
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.72 E-value=0.00059 Score=52.45 Aligned_cols=76 Identities=12% Similarity=0.010 Sum_probs=56.4
Q ss_pred CCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCC-cceEEeCCc
Q 029554 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESS-LDLAISCLG 170 (191)
Q Consensus 92 ~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-fDlVis~~~ 170 (191)
+.+++|||+|.|.=+..|+=.+|..+|+.+|....-+.-.++-..+ -.-.+++++.+.+|..... .. ||+|+|..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~e--L~L~nv~i~~~RaE~~~~~-~~~~D~vtsRAv 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKE--LGLENVEIVHGRAEEFGQE-KKQYDVVTSRAV 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHH--hCCCCeEEehhhHhhcccc-cccCcEEEeehc
Confidence 5799999999998888877556778899999998765555544433 1334589999998877532 23 999998643
No 227
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.68 E-value=0.00018 Score=62.57 Aligned_cols=75 Identities=11% Similarity=-0.036 Sum_probs=50.8
Q ss_pred CCeEEEEcCCccHHHHHHhhcCC--------CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC-----CCC
Q 029554 92 FPTALCLGGSLEAVRRLLRGRGG--------IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-----PLK 158 (191)
Q Consensus 92 ~~~VLDlGcG~G~~~~~l~~~~~--------~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l-----~~~ 158 (191)
..+|||.|||+|.+...+....+ ..+++|+|+++..+..++....... .....+...|.... .-.
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~--~~~~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA--LLEINVINFNSLSYVLLNIESY 109 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC--CCCceeeecccccccccccccc
Confidence 45899999999999887765431 2579999999999999988765421 11233444442211 111
Q ss_pred CCCcceEEeC
Q 029554 159 ESSLDLAISC 168 (191)
Q Consensus 159 ~~~fDlVis~ 168 (191)
.+.||+||+|
T Consensus 110 ~~~fD~IIgN 119 (524)
T TIGR02987 110 LDLFDIVITN 119 (524)
T ss_pred cCcccEEEeC
Confidence 2579999998
No 228
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.00037 Score=53.01 Aligned_cols=77 Identities=16% Similarity=0.105 Sum_probs=54.9
Q ss_pred HHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--
Q 029554 80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-- 156 (191)
Q Consensus 80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-- 156 (191)
+|.+.. .+..++.+|+||||.+|.+++.+++.. +...|+++|+.|- ....++.++++|+..-+
T Consensus 35 el~~k~-~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-------------~~~~~V~~iq~d~~~~~~~ 100 (205)
T COG0293 35 ELNEKF-KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-------------KPIPGVIFLQGDITDEDTL 100 (205)
T ss_pred HHHHhc-CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-------------ccCCCceEEeeeccCccHH
Confidence 444444 345578899999999999999888764 3345999999773 23344888999876432
Q ss_pred ------CCCCCcceEEeCCc
Q 029554 157 ------LKESSLDLAISCLG 170 (191)
Q Consensus 157 ------~~~~~fDlVis~~~ 170 (191)
+....+|+|+|-++
T Consensus 101 ~~l~~~l~~~~~DvV~sD~a 120 (205)
T COG0293 101 EKLLEALGGAPVDVVLSDMA 120 (205)
T ss_pred HHHHHHcCCCCcceEEecCC
Confidence 44456899998554
No 229
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.0001 Score=62.59 Aligned_cols=60 Identities=20% Similarity=0.158 Sum_probs=52.7
Q ss_pred cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC
Q 029554 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE 153 (191)
Q Consensus 90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~ 153 (191)
..+..+||+.||||.++..+++.. .+|+|++++++.++-|+.++.. +...+..|+++..|
T Consensus 382 ~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~nA~~--NgisNa~Fi~gqaE 441 (534)
T KOG2187|consen 382 PADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKNAQI--NGISNATFIVGQAE 441 (534)
T ss_pred CCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhcchh--cCccceeeeecchh
Confidence 355789999999999999999876 9999999999999999988765 77889999999544
No 230
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.65 E-value=0.00015 Score=55.53 Aligned_cols=73 Identities=18% Similarity=0.095 Sum_probs=53.8
Q ss_pred EEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecC-CCCCCCCCCCcceEEeCC
Q 029554 95 ALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGD-EEFLPLKESSLDLAISCL 169 (191)
Q Consensus 95 VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d-~~~l~~~~~~fDlVis~~ 169 (191)
|.|+||-=|++...|.+.+...+++++|++++-++.|++.... .+...++.+..+| ++.++. ....|.|+...
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~-~~l~~~i~~rlgdGL~~l~~-~e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAK-YGLEDRIEVRLGDGLEVLKP-GEDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHH-TT-TTTEEEEE-SGGGG--G-GG---EEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHH-cCCcccEEEEECCcccccCC-CCCCCEEEEec
Confidence 6899999999999999998888999999999999999998875 2335678899998 666642 22378887643
No 231
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.65 E-value=0.00036 Score=57.19 Aligned_cols=79 Identities=16% Similarity=0.087 Sum_probs=65.2
Q ss_pred ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCC-ceeeEecCCCCCCCCCCCcceEEe
Q 029554 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKESSLDLAIS 167 (191)
Q Consensus 89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~-~~~~~~~d~~~l~~~~~~fDlVis 167 (191)
...+.+|||+=||-|+++..++..+... |+++|++|..++.+++++.. |... .+..+++|.......-+.+|-|++
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~~-V~A~diNP~A~~~L~eNi~L--N~v~~~v~~i~gD~rev~~~~~~aDrIim 262 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRPK-VYAIDINPDAVEYLKENIRL--NKVEGRVEPILGDAREVAPELGVADRIIM 262 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCce-EEEEecCHHHHHHHHHHHHh--cCccceeeEEeccHHHhhhccccCCEEEe
Confidence 3468899999999999999999887333 99999999999999998875 4444 388999998877655588999998
Q ss_pred CCc
Q 029554 168 CLG 170 (191)
Q Consensus 168 ~~~ 170 (191)
++-
T Consensus 263 ~~p 265 (341)
T COG2520 263 GLP 265 (341)
T ss_pred CCC
Confidence 764
No 232
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.64 E-value=0.00022 Score=59.45 Aligned_cols=93 Identities=5% Similarity=-0.115 Sum_probs=68.6
Q ss_pred CCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC-CCCCCCcceEEeCC
Q 029554 92 FPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-PLKESSLDLAISCL 169 (191)
Q Consensus 92 ~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l-~~~~~~fDlVis~~ 169 (191)
..+|||+.||+|..+..++... ...+|+++|+++..++.++++.+. +...++.+.+.|...+ ......||+|...-
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~--N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP 122 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEY--NSVENIEVPNEDAANVLRYRNRKFHVIDIDP 122 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHH--hCCCcEEEEchhHHHHHHHhCCCCCEEEeCC
Confidence 3579999999999999888763 357899999999999999998865 3444577888886643 22235799998743
Q ss_pred cccCcCChHHHHHHHHhccCC
Q 029554 170 GLHWTNDLPGAMIQVSIFLLP 190 (191)
Q Consensus 170 ~l~~~~d~~~~l~~i~r~Lkp 190 (191)
. ..+..++..+.+.+++
T Consensus 123 -f---Gs~~~fld~al~~~~~ 139 (374)
T TIGR00308 123 -F---GTPAPFVDSAIQASAE 139 (374)
T ss_pred -C---CCcHHHHHHHHHhccc
Confidence 2 3445677777766654
No 233
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.60 E-value=0.00086 Score=53.05 Aligned_cols=113 Identities=20% Similarity=0.219 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhcccCCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCC
Q 029554 76 AVAENLLDRLEDCRKTFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE 152 (191)
Q Consensus 76 ~~~~~l~~~l~~~~~~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~ 152 (191)
....+.+..+.. ..--...||||||-- ..-+......|.++|+-+|..+-.+..++..+.. +....+.++.+|+
T Consensus 54 ~Fl~RaVr~la~-~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~--~~~g~t~~v~aD~ 130 (267)
T PF04672_consen 54 AFLRRAVRYLAE-EAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLAD--NPRGRTAYVQADL 130 (267)
T ss_dssp HHHHHHHHHHHC-TT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT---TTSEEEEEE--T
T ss_pred HHHHHHHHHHHH-hcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcC--CCCccEEEEeCCC
Confidence 334444444442 113347999999943 4444444446789999999999999988887643 2222378888887
Q ss_pred CCCC--C----CCCCcc-----eEEeCCcccCcC---ChHHHHHHHHhccCCC
Q 029554 153 EFLP--L----KESSLD-----LAISCLGLHWTN---DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 153 ~~l~--~----~~~~fD-----lVis~~~l~~~~---d~~~~l~~i~r~Lkpg 191 (191)
.... + -.+-+| .|+...+|||++ ++..+++.+.+.|.||
T Consensus 131 r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapG 183 (267)
T PF04672_consen 131 RDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPG 183 (267)
T ss_dssp T-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT
T ss_pred CCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCC
Confidence 6421 0 001222 567788999995 5788999999999887
No 234
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.58 E-value=0.00035 Score=55.70 Aligned_cols=100 Identities=8% Similarity=0.071 Sum_probs=60.1
Q ss_pred CCeEEEEcCCccHHHHHHhh--cCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554 92 FPTALCLGGSLEAVRRLLRG--RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL 169 (191)
Q Consensus 92 ~~~VLDlGcG~G~~~~~l~~--~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~ 169 (191)
+.+|+=||||+=.++..+.. .++...++++|+++..++.+++-.........++.|+.+|....+..-..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 35999999998877765543 2445789999999999999987655211235568999999776554446899998765
Q ss_pred cccC-cCChHHHHHHHHhccCCC
Q 029554 170 GLHW-TNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 170 ~l~~-~~d~~~~l~~i~r~Lkpg 191 (191)
-... -.+...++.++.+.++||
T Consensus 201 lVg~~~e~K~~Il~~l~~~m~~g 223 (276)
T PF03059_consen 201 LVGMDAEPKEEILEHLAKHMAPG 223 (276)
T ss_dssp T-S----SHHHHHHHHHHHS-TT
T ss_pred hcccccchHHHHHHHHHhhCCCC
Confidence 4432 237889999999999987
No 235
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.56 E-value=0.00014 Score=57.43 Aligned_cols=99 Identities=20% Similarity=0.119 Sum_probs=58.4
Q ss_pred CCCeEEEEcCCccHHHH-HHhhcCCCceEEEEECChhHHHHHHHhhhh-----c-----------cCC-----------C
Q 029554 91 TFPTALCLGGSLEAVRR-LLRGRGGIEKLIMMDTSYDMLKLCKDAQQD-----A-----------HND-----------N 142 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~-~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~-----~-----------~~~-----------~ 142 (191)
.+.++||||||+-..-. ...+.+ .+++..|.++.-++..++-.+. | +.. .
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f--~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWF--EEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTE--EEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhh--cceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 45589999999854422 222334 7899999999876654432211 0 000 0
Q ss_pred CceeeEecCCCCC-CCCC-----CCcceEEeCCcccCc-CCh---HHHHHHHHhccCCC
Q 029554 143 IETCFVVGDEEFL-PLKE-----SSLDLAISCLGLHWT-NDL---PGAMIQVSIFLLPD 191 (191)
Q Consensus 143 ~~~~~~~~d~~~l-~~~~-----~~fDlVis~~~l~~~-~d~---~~~l~~i~r~Lkpg 191 (191)
.-..++..|+... |+.+ ..||+|++.++|... .|+ ..+++++.++||||
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpG 192 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPG 192 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence 0123555676543 3332 359999999999865 454 46799999999997
No 236
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.55 E-value=0.00096 Score=51.01 Aligned_cols=98 Identities=16% Similarity=0.127 Sum_probs=72.6
Q ss_pred cCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-C-CCCCCCcceEEe
Q 029554 90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-L-PLKESSLDLAIS 167 (191)
Q Consensus 90 ~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l-~~~~~~fDlVis 167 (191)
..+++||+||-|.|.....+.+.-| .+=+.++..++.++..+...- ....++.+..+--+. + .++++.||-|.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p-~~H~IiE~hp~V~krmr~~gw---~ek~nViil~g~WeDvl~~L~d~~FDGI~y 175 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPP-DEHWIIEAHPDVLKRMRDWGW---REKENVIILEGRWEDVLNTLPDKHFDGIYY 175 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCC-cceEEEecCHHHHHHHHhccc---ccccceEEEecchHhhhccccccCcceeEe
Confidence 4788999999999999988887654 455678999999988876542 234456666665332 2 256788999987
Q ss_pred CCcccCcCChHHHHHHHHhccCCC
Q 029554 168 CLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 168 ~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
----.+-+|...+.+.+.++|||+
T Consensus 176 DTy~e~yEdl~~~hqh~~rLLkP~ 199 (271)
T KOG1709|consen 176 DTYSELYEDLRHFHQHVVRLLKPE 199 (271)
T ss_pred echhhHHHHHHHHHHHHhhhcCCC
Confidence 544455568888899999999996
No 237
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.0017 Score=50.34 Aligned_cols=101 Identities=18% Similarity=0.199 Sum_probs=66.9
Q ss_pred HHHHHHHh--cccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-
Q 029554 80 NLLDRLED--CRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP- 156 (191)
Q Consensus 80 ~l~~~l~~--~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~- 156 (191)
.|...+.. +...+..+||+|+.||.++..+.+++ ..+|+++|...+.+..--+. ...-+.....++..+.
T Consensus 66 KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~------d~rV~~~E~tN~r~l~~ 138 (245)
T COG1189 66 KLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRN------DPRVIVLERTNVRYLTP 138 (245)
T ss_pred HHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhc------CCcEEEEecCChhhCCH
Confidence 44444443 34567899999999999999999885 57999999998876554222 1111333334444332
Q ss_pred --CCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 157 --LKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 157 --~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
+. +..|+|+|-.++- .+..+|..+..+++|+
T Consensus 139 ~~~~-~~~d~~v~DvSFI---SL~~iLp~l~~l~~~~ 171 (245)
T COG1189 139 EDFT-EKPDLIVIDVSFI---SLKLILPALLLLLKDG 171 (245)
T ss_pred HHcc-cCCCeEEEEeehh---hHHHHHHHHHHhcCCC
Confidence 22 3678999876654 5677777787777764
No 238
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.45 E-value=0.00029 Score=52.67 Aligned_cols=91 Identities=16% Similarity=0.140 Sum_probs=66.7
Q ss_pred CeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCccc
Q 029554 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLH 172 (191)
Q Consensus 93 ~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~ 172 (191)
+.+.|+|+|+|.++...+... .+|++++.+|.-...+.++..- +...+..++.+|.....| ...|+|+|-+-=.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A--~rViAiE~dPk~a~~a~eN~~v--~g~~n~evv~gDA~~y~f--e~ADvvicEmlDT 107 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA--ERVIAIEKDPKRARLAEENLHV--PGDVNWEVVVGDARDYDF--ENADVVICEMLDT 107 (252)
T ss_pred hceeeccCCcchHHHHHHhhh--ceEEEEecCcHHHHHhhhcCCC--CCCcceEEEecccccccc--cccceeHHHHhhH
Confidence 568999999999998877765 8999999999999888887643 456689999999998887 4579999854211
Q ss_pred --CcCChHHHHHHHHhccC
Q 029554 173 --WTNDLPGAMIQVSIFLL 189 (191)
Q Consensus 173 --~~~d~~~~l~~i~r~Lk 189 (191)
-.+....++..+.+.||
T Consensus 108 aLi~E~qVpV~n~vleFLr 126 (252)
T COG4076 108 ALIEEKQVPVINAVLEFLR 126 (252)
T ss_pred HhhcccccHHHHHHHHHhh
Confidence 11223345555554444
No 239
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=0.0023 Score=53.07 Aligned_cols=112 Identities=16% Similarity=0.020 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCC--CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC
Q 029554 77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG--IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF 154 (191)
Q Consensus 77 ~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~ 154 (191)
.+..+...+.. ..++.+|||+++++|.=+.++++... ...|+++|+++.-+...+++..+. ...++.....|...
T Consensus 143 ~sS~l~a~~L~-p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~Rl--G~~nv~~~~~d~~~ 219 (355)
T COG0144 143 EASQLPALVLD-PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRL--GVRNVIVVNKDARR 219 (355)
T ss_pred HHHHHHHHHcC-CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHc--CCCceEEEeccccc
Confidence 34455544443 67889999999999988888877643 255799999999998888888762 33446667777553
Q ss_pred CC---CCCCCcceEEeC------CcccCcCC----------------hHHHHHHHHhccCCC
Q 029554 155 LP---LKESSLDLAISC------LGLHWTND----------------LPGAMIQVSIFLLPD 191 (191)
Q Consensus 155 l~---~~~~~fDlVis~------~~l~~~~d----------------~~~~l~~i~r~Lkpg 191 (191)
.+ ...++||.|+.- .+++--+| ...+|....++||||
T Consensus 220 ~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~G 281 (355)
T COG0144 220 LAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPG 281 (355)
T ss_pred ccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 32 222369999852 23321111 235677777888876
No 240
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.40 E-value=0.00058 Score=54.99 Aligned_cols=82 Identities=10% Similarity=0.020 Sum_probs=46.4
Q ss_pred CeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC-----CCCCCCCCcceEEe
Q 029554 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE-----FLPLKESSLDLAIS 167 (191)
Q Consensus 93 ~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~-----~l~~~~~~fDlVis 167 (191)
-++||||+|..-+-..|..+....+++|+|+++..++.|++......+...++.+....-. .+..++..||+++|
T Consensus 104 v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmC 183 (299)
T PF05971_consen 104 VRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTMC 183 (299)
T ss_dssp -EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE
T ss_pred eEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEec
Confidence 4799999999866555543322489999999999999999988762234455666544211 12233468999999
Q ss_pred CCcccCc
Q 029554 168 CLGLHWT 174 (191)
Q Consensus 168 ~~~l~~~ 174 (191)
|=-++--
T Consensus 184 NPPFy~s 190 (299)
T PF05971_consen 184 NPPFYSS 190 (299)
T ss_dssp -----SS
T ss_pred CCccccC
Confidence 8766643
No 241
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.38 E-value=0.0014 Score=49.10 Aligned_cols=90 Identities=17% Similarity=0.096 Sum_probs=63.7
Q ss_pred HHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CCC
Q 029554 79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LPL 157 (191)
Q Consensus 79 ~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~~ 157 (191)
+.+...+......+.++||+=+|+|.++.....++ ..+++.+|.+...+...+++.... +...+..++..|... ++.
T Consensus 31 EalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l-~~~~~~~~~~~da~~~L~~ 108 (187)
T COG0742 31 EALFNILAPDEIEGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKAL-GLEGEARVLRNDALRALKQ 108 (187)
T ss_pred HHHHHhccccccCCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHh-CCccceEEEeecHHHHHHh
Confidence 34444444201367899999999999998888876 578999999999999999887652 223567777777552 222
Q ss_pred CCC--CcceEEeCCc
Q 029554 158 KES--SLDLAISCLG 170 (191)
Q Consensus 158 ~~~--~fDlVis~~~ 170 (191)
... +||+|+.-=-
T Consensus 109 ~~~~~~FDlVflDPP 123 (187)
T COG0742 109 LGTREPFDLVFLDPP 123 (187)
T ss_pred cCCCCcccEEEeCCC
Confidence 223 4999997533
No 242
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.37 E-value=0.0036 Score=49.53 Aligned_cols=95 Identities=11% Similarity=-0.038 Sum_probs=69.8
Q ss_pred ccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC--CCCCcceE
Q 029554 89 RKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL--KESSLDLA 165 (191)
Q Consensus 89 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~--~~~~fDlV 165 (191)
..|+.+|||-|.|.|.++-.+++. +|..+++.+|+-+.-.+.+.+.+++ ..-..++.+..-|+....| ++..+|.|
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~-hgi~~~vt~~hrDVc~~GF~~ks~~aDaV 181 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFRE-HGIGDNVTVTHRDVCGSGFLIKSLKADAV 181 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHH-hCCCcceEEEEeecccCCccccccccceE
Confidence 568999999999999998888764 5778999999988877777777654 2245678888888876543 35779999
Q ss_pred EeCCcccCcCChHHHHHHHHhccC
Q 029554 166 ISCLGLHWTNDLPGAMIQVSIFLL 189 (191)
Q Consensus 166 is~~~l~~~~d~~~~l~~i~r~Lk 189 (191)
+.-. +.|..++..+..+||
T Consensus 182 FLDl-----PaPw~AiPha~~~lk 200 (314)
T KOG2915|consen 182 FLDL-----PAPWEAIPHAAKILK 200 (314)
T ss_pred EEcC-----CChhhhhhhhHHHhh
Confidence 8643 344445555555554
No 243
>PRK10742 putative methyltransferase; Provisional
Probab=97.28 E-value=0.002 Score=50.55 Aligned_cols=79 Identities=10% Similarity=0.004 Sum_probs=57.7
Q ss_pred CeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhcc-----CC--CCceeeEecCCC-CCCCCCCCcce
Q 029554 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH-----ND--NIETCFVVGDEE-FLPLKESSLDL 164 (191)
Q Consensus 93 ~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~-----~~--~~~~~~~~~d~~-~l~~~~~~fDl 164 (191)
.+|||+-+|.|..+..++.++ ++|+++|-++.+....++...... .. ..+++++.+|.. .+.-...+||+
T Consensus 90 p~VLD~TAGlG~Da~~las~G--~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDV 167 (250)
T PRK10742 90 PDVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV 167 (250)
T ss_pred CEEEECCCCccHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcE
Confidence 389999999999999999988 779999999998888877665410 11 135777778744 33322347999
Q ss_pred EEeCCcccC
Q 029554 165 AISCLGLHW 173 (191)
Q Consensus 165 Vis~~~l~~ 173 (191)
|+.-=...|
T Consensus 168 VYlDPMfp~ 176 (250)
T PRK10742 168 VYLDPMFPH 176 (250)
T ss_pred EEECCCCCC
Confidence 997544444
No 244
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.15 E-value=0.0042 Score=47.66 Aligned_cols=77 Identities=12% Similarity=0.034 Sum_probs=60.5
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCC-CCCCCCCCCcceEEeCC
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE-EFLPLKESSLDLAISCL 169 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~-~~l~~~~~~fDlVis~~ 169 (191)
.+.++.|+||-=+++...|.+.++...+++.|++++-++.|.+.+.. .+....++...+|- ..+. ++..+|.|+...
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~-~~l~~~i~vr~~dgl~~l~-~~d~~d~ivIAG 93 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKK-NNLSERIDVRLGDGLAVLE-LEDEIDVIVIAG 93 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHh-cCCcceEEEeccCCccccC-ccCCcCEEEEeC
Confidence 45569999999999999999999899999999999999999888765 23455677777774 3343 334789887654
No 245
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.11 E-value=0.0061 Score=47.03 Aligned_cols=97 Identities=10% Similarity=0.008 Sum_probs=68.6
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC-CCC-----CCCCCcc
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE-FLP-----LKESSLD 163 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~-~l~-----~~~~~fD 163 (191)
.+.++||||.=||+.+..++...| ..+|+++|+++...+.+....+. .....++.++++... .++ .+.++||
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~-agv~~KI~~i~g~a~esLd~l~~~~~~~tfD 151 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKL-AGVDHKITFIEGPALESLDELLADGESGTFD 151 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHh-ccccceeeeeecchhhhHHHHHhcCCCCcee
Confidence 567899999988888777765543 47999999999999888655443 234567889988743 322 3568999
Q ss_pred eEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 164 LAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 164 lVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
+++.- +|=.+......++.++||+|
T Consensus 152 faFvD---adK~nY~~y~e~~l~Llr~G 176 (237)
T KOG1663|consen 152 FAFVD---ADKDNYSNYYERLLRLLRVG 176 (237)
T ss_pred EEEEc---cchHHHHHHHHHHHhhcccc
Confidence 99853 22223346777888888876
No 246
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.05 E-value=0.0018 Score=49.64 Aligned_cols=88 Identities=14% Similarity=0.078 Sum_probs=62.4
Q ss_pred HHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC---
Q 029554 78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF--- 154 (191)
Q Consensus 78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~--- 154 (191)
+..+..+..... ....|+|.-||.|..+...+..+ ..|+++|+++.-+..|+++++- .+-..++.|+++|+..
T Consensus 82 a~~iA~~v~~~~-~~~~iidaf~g~gGntiqfa~~~--~~VisIdiDPikIa~AkhNaei-YGI~~rItFI~GD~ld~~~ 157 (263)
T KOG2730|consen 82 AEHIANRVVACM-NAEVIVDAFCGVGGNTIQFALQG--PYVIAIDIDPVKIACARHNAEV-YGVPDRITFICGDFLDLAS 157 (263)
T ss_pred HHHHHHHHHHhc-CcchhhhhhhcCCchHHHHHHhC--CeEEEEeccHHHHHHHhcccee-ecCCceeEEEechHHHHHH
Confidence 444444444322 44579999999999988888877 8999999999999999887753 2234589999999653
Q ss_pred -CCCCCCCcceEEeCC
Q 029554 155 -LPLKESSLDLAISCL 169 (191)
Q Consensus 155 -l~~~~~~fDlVis~~ 169 (191)
+.+....+|+|..+-
T Consensus 158 ~lq~~K~~~~~vf~sp 173 (263)
T KOG2730|consen 158 KLKADKIKYDCVFLSP 173 (263)
T ss_pred HHhhhhheeeeeecCC
Confidence 334444566776543
No 247
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.03 E-value=0.004 Score=50.17 Aligned_cols=136 Identities=21% Similarity=0.155 Sum_probs=79.4
Q ss_pred HHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHh--cccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHH
Q 029554 54 HLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLED--CRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLC 131 (191)
Q Consensus 54 ~~~~~~~~~~a~~y~~~~~~~~~~~~~l~~~l~~--~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a 131 (191)
.++...+++.++...+.+.++..+.++|....+. ..+...+||-=|||.|.++..|+..| -.+-|-+.|--|+-..
T Consensus 111 ~l~~i~RdwssE~~~ERd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G--~~~qGNEfSy~Mli~S 188 (369)
T KOG2798|consen 111 TLKQICRDWSSEGQRERDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLG--FKCQGNEFSYFMLICS 188 (369)
T ss_pred HHHHHHHHhhhccchhhhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhc--ccccccHHHHHHHHHH
Confidence 3455555665543334444444444444444433 12235579999999999999999887 4556667777765322
Q ss_pred -------HHhhhh-----------ccC--------------------CCCceeeEecCCCC-CC--CCCCCcceEEeCCc
Q 029554 132 -------KDAQQD-----------AHN--------------------DNIETCFVVGDEEF-LP--LKESSLDLAISCLG 170 (191)
Q Consensus 132 -------~~~~~~-----------~~~--------------------~~~~~~~~~~d~~~-l~--~~~~~fDlVis~~~ 170 (191)
+..... +.. .........+|+.. .+ -..+.||+|+.++-
T Consensus 189 ~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfF 268 (369)
T KOG2798|consen 189 SFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFF 268 (369)
T ss_pred HHHHHhhccCCcEEEEeeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEE
Confidence 111000 000 00111223344322 11 12247999999987
Q ss_pred ccCcCChHHHHHHHHhccCCC
Q 029554 171 LHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 171 l~~~~d~~~~l~~i~r~Lkpg 191 (191)
+....+.-..+..|..+||||
T Consensus 269 IDTa~NileYi~tI~~iLk~G 289 (369)
T KOG2798|consen 269 IDTAHNILEYIDTIYKILKPG 289 (369)
T ss_pred eechHHHHHHHHHHHHhccCC
Confidence 777778889999999999997
No 248
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.00029 Score=51.41 Aligned_cols=98 Identities=11% Similarity=0.120 Sum_probs=65.2
Q ss_pred CCCeEEEEcCCcc-HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCC---CCceeeEecCCC--CCCCCCCCcce
Q 029554 91 TFPTALCLGGSLE-AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHND---NIETCFVVGDEE--FLPLKESSLDL 164 (191)
Q Consensus 91 ~~~~VLDlGcG~G-~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~---~~~~~~~~~d~~--~l~~~~~~fDl 164 (191)
.+.+|||+|.|-- ..+..++...|...|..+|-++..+...++.... +. ..++....-+.. +.......||.
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~--n~~s~~tsc~vlrw~~~~aqsq~eq~tFDi 106 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNS--NMASSLTSCCVLRWLIWGAQSQQEQHTFDI 106 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhc--ccccccceehhhHHHHhhhHHHHhhCcccE
Confidence 3457999999954 4455556566788999999999999888776533 21 122222222221 11123458999
Q ss_pred EEeCCcccCcCChHHHHHHHHhccCC
Q 029554 165 AISCLGLHWTNDLPGAMIQVSIFLLP 190 (191)
Q Consensus 165 Vis~~~l~~~~d~~~~l~~i~r~Lkp 190 (191)
|++..++-.-+-....++-|...|+|
T Consensus 107 IlaADClFfdE~h~sLvdtIk~lL~p 132 (201)
T KOG3201|consen 107 ILAADCLFFDEHHESLVDTIKSLLRP 132 (201)
T ss_pred EEeccchhHHHHHHHHHHHHHHHhCc
Confidence 99998876555556778888888887
No 249
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.97 E-value=0.0021 Score=52.02 Aligned_cols=89 Identities=17% Similarity=0.092 Sum_probs=60.9
Q ss_pred HHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-
Q 029554 78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP- 156 (191)
Q Consensus 78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~- 156 (191)
..++++.|. ..+++.++|.--|.|..+..+.+..+..+++|+|-++.+++.++++... ...++.++..++..+.
T Consensus 9 l~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~---~~~r~~~~~~~F~~l~~ 83 (310)
T PF01795_consen 9 LKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKK---FDDRFIFIHGNFSNLDE 83 (310)
T ss_dssp HHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCC---CCTTEEEEES-GGGHHH
T ss_pred HHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhh---ccceEEEEeccHHHHHH
Confidence 345555555 5578899999999999999999887779999999999999999887753 3556888888876543
Q ss_pred ----C-CCCCcceEEeCCcc
Q 029554 157 ----L-KESSLDLAISCLGL 171 (191)
Q Consensus 157 ----~-~~~~fDlVis~~~l 171 (191)
. ..+.+|.|+.-+++
T Consensus 84 ~l~~~~~~~~~dgiL~DLGv 103 (310)
T PF01795_consen 84 YLKELNGINKVDGILFDLGV 103 (310)
T ss_dssp HHHHTTTTS-EEEEEEE-S-
T ss_pred HHHHccCCCccCEEEEcccc
Confidence 2 34579999876554
No 250
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.86 E-value=0.0064 Score=46.82 Aligned_cols=119 Identities=16% Similarity=0.129 Sum_probs=69.0
Q ss_pred hcCCCchHHHHHHHHHHHHHHhc-ccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhccCCCC
Q 029554 66 LTRPNDSFVDAVAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI 143 (191)
Q Consensus 66 ~y~~~~~~~~~~~~~l~~~l~~~-~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~ 143 (191)
.|+.++..+..++..++.-+..+ ..++.+||.+|+++|....++++. ++...|++|+.|+......-.-.+. -.
T Consensus 47 eYR~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~----R~ 122 (229)
T PF01269_consen 47 EYRVWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK----RP 122 (229)
T ss_dssp EEEEE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH----ST
T ss_pred ceeecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc----CC
Confidence 56666677777776676655532 357789999999999999998875 3457899999999643333222211 22
Q ss_pred ceeeEecCCCCC----CCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 144 ETCFVVGDEEFL----PLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 144 ~~~~~~~d~~~l----~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
|+.-+..|...- .+- +.+|+|++.-+ +-+....++.+....||+|
T Consensus 123 NIiPIl~DAr~P~~Y~~lv-~~VDvI~~DVa--Qp~Qa~I~~~Na~~fLk~g 171 (229)
T PF01269_consen 123 NIIPILEDARHPEKYRMLV-EMVDVIFQDVA--QPDQARIAALNARHFLKPG 171 (229)
T ss_dssp TEEEEES-TTSGGGGTTTS---EEEEEEE-S--STTHHHHHHHHHHHHEEEE
T ss_pred ceeeeeccCCChHHhhccc-ccccEEEecCC--ChHHHHHHHHHHHhhccCC
Confidence 366566776521 222 47999987644 2222334566666677664
No 251
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.82 E-value=0.0044 Score=48.20 Aligned_cols=79 Identities=20% Similarity=0.168 Sum_probs=46.9
Q ss_pred CeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhcc-CC------CCceeeEecCCC-CCCCCCCCcce
Q 029554 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH-ND------NIETCFVVGDEE-FLPLKESSLDL 164 (191)
Q Consensus 93 ~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~-~~------~~~~~~~~~d~~-~l~~~~~~fDl 164 (191)
.+|||.-+|.|..+..++..| ++|+++|-|+-+....+.-+..+. .. ..+++++.+|.. .+..++.+||+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DV 154 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLG--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDV 154 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SE
T ss_pred CEEEECCCcchHHHHHHHccC--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCE
Confidence 489999999999999998777 799999999987666554332210 11 136888888854 46666789999
Q ss_pred EEeCCcccC
Q 029554 165 AISCLGLHW 173 (191)
Q Consensus 165 Vis~~~l~~ 173 (191)
|+.-=.+.+
T Consensus 155 VY~DPMFp~ 163 (234)
T PF04445_consen 155 VYFDPMFPE 163 (234)
T ss_dssp EEE--S---
T ss_pred EEECCCCCC
Confidence 998655544
No 252
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.81 E-value=0.0044 Score=46.72 Aligned_cols=77 Identities=13% Similarity=0.024 Sum_probs=54.8
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCc
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLG 170 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~ 170 (191)
.+.+|||+|+|.|..+..-+..+ ...|+..|+.+-......-+... ....+.+...|... ++..||+|+..-.
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~a---ngv~i~~~~~d~~g---~~~~~Dl~LagDl 151 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAA---NGVSILFTHADLIG---SPPAFDLLLAGDL 151 (218)
T ss_pred ccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhh---ccceeEEeeccccC---CCcceeEEEeece
Confidence 56799999999998887776655 46899999997766655544432 23446666666544 4567999999877
Q ss_pred ccCc
Q 029554 171 LHWT 174 (191)
Q Consensus 171 l~~~ 174 (191)
+..-
T Consensus 152 fy~~ 155 (218)
T COG3897 152 FYNH 155 (218)
T ss_pred ecCc
Confidence 6543
No 253
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=96.78 E-value=0.0083 Score=47.29 Aligned_cols=45 Identities=9% Similarity=-0.051 Sum_probs=33.9
Q ss_pred CCeEEEEcCCccHHHHHHhhcC--------CCceEEEEECChhHHHHHHHhhh
Q 029554 92 FPTALCLGGSLEAVRRLLRGRG--------GIEKLIMMDTSYDMLKLCKDAQQ 136 (191)
Q Consensus 92 ~~~VLDlGcG~G~~~~~l~~~~--------~~~~v~~vD~s~~~l~~a~~~~~ 136 (191)
..+|+|+|+|+|.++..+.+.. ...+|+.+|+|+.+.+.-++++.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~ 71 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLS 71 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhh
Confidence 3589999999999988876532 23689999999999888777764
No 254
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.61 E-value=0.0032 Score=47.73 Aligned_cols=44 Identities=11% Similarity=0.003 Sum_probs=39.7
Q ss_pred eEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhh
Q 029554 94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD 137 (191)
Q Consensus 94 ~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~ 137 (191)
.+.|||||.|.++..|+..+|..-++|++|--..-+..++++..
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~A 106 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQA 106 (249)
T ss_pred eEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHH
Confidence 58999999999999999999999999999998888888877654
No 255
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.55 E-value=0.019 Score=47.43 Aligned_cols=101 Identities=20% Similarity=0.131 Sum_probs=65.9
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhh--hhccC---CCCceeeEecCCCC-CCCCCCCcce
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ--QDAHN---DNIETCFVVGDEEF-LPLKESSLDL 164 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~--~~~~~---~~~~~~~~~~d~~~-l~~~~~~fDl 164 (191)
...+||-+|.|.|...+.+.+.-...+++-+|.+|.|++.+++.. ...+. ...++.++..|.-+ +.-....||.
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 345799999999999999987433789999999999999998432 22111 23467777777543 3333458999
Q ss_pred EEeCCcccCcCC-----hHHHHHHHHhccCCC
Q 029554 165 AISCLGLHWTND-----LPGAMIQVSIFLLPD 191 (191)
Q Consensus 165 Vis~~~l~~~~d-----~~~~l~~i~r~Lkpg 191 (191)
||..+-=...+. ...+..-+.+.|+++
T Consensus 369 vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~ 400 (508)
T COG4262 369 VIVDLPDPSTPSIGRLYSVEFYRLLSRHLAET 400 (508)
T ss_pred EEEeCCCCCCcchhhhhhHHHHHHHHHhcCcC
Confidence 997543221111 124555666666653
No 256
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.52 E-value=0.011 Score=49.32 Aligned_cols=88 Identities=19% Similarity=0.143 Sum_probs=49.1
Q ss_pred CCeEEEEcCCccHHHHHHhh--------c-------CCCceEEEEECChhHHHHHHHhhhhccC-----------CCCce
Q 029554 92 FPTALCLGGSLEAVRRLLRG--------R-------GGIEKLIMMDTSYDMLKLCKDAQQDAHN-----------DNIET 145 (191)
Q Consensus 92 ~~~VLDlGcG~G~~~~~l~~--------~-------~~~~~v~~vD~s~~~l~~a~~~~~~~~~-----------~~~~~ 145 (191)
..+|+|+|||+|.++..+.. + -|.-+|..-|.-..-....-+....... ...+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 45899999999987755532 1 1345777777655433322222211000 00011
Q ss_pred eeEe---cCCCCCCCCCCCcceEEeCCcccCcCChHH
Q 029554 146 CFVV---GDEEFLPLKESSLDLAISCLGLHWTNDLPG 179 (191)
Q Consensus 146 ~~~~---~d~~~l~~~~~~fDlVis~~~l~~~~d~~~ 179 (191)
.|+. +.+-.-=||.++.++++|..+|||+...+.
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~ 180 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPE 180 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCch
Confidence 1221 222222378899999999999999865433
No 257
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.46 E-value=0.034 Score=42.30 Aligned_cols=68 Identities=15% Similarity=0.062 Sum_probs=53.0
Q ss_pred hhcCCCchHHHHHHHHHHHHHHhc-ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHH
Q 029554 65 WLTRPNDSFVDAVAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCK 132 (191)
Q Consensus 65 ~~y~~~~~~~~~~~~~l~~~l~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~ 132 (191)
..|+.++..+..++..++.-+..+ .+++.+||-+|+.+|....++++..+...+++++.|+.+....-
T Consensus 49 ~eYR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl 117 (231)
T COG1889 49 EEYREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELL 117 (231)
T ss_pred cceeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHH
Confidence 357777777777777777766632 35788999999999999999988766678999999998654443
No 258
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.24 E-value=0.026 Score=44.37 Aligned_cols=96 Identities=11% Similarity=0.043 Sum_probs=54.6
Q ss_pred CCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhh---hccCCCCceeeEecCCCC---CCCCCCC-cce
Q 029554 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQ---DAHNDNIETCFVVGDEEF---LPLKESS-LDL 164 (191)
Q Consensus 92 ~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~---~~~~~~~~~~~~~~d~~~---l~~~~~~-fDl 164 (191)
...|||+|+|+|..+...+..+ ..+|+..|....+......+.. ...+....+.+...+-.. ..+-... ||+
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLL-GAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHh-cceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 4569999999997776665532 4889999987765433322111 111122234444433221 1112233 999
Q ss_pred EEeCCcccCcCChHHHHHHHHhcc
Q 029554 165 AISCLGLHWTNDLPGAMIQVSIFL 188 (191)
Q Consensus 165 Vis~~~l~~~~d~~~~l~~i~r~L 188 (191)
|++..++.........+.-++..|
T Consensus 166 ilasDvvy~~~~~e~Lv~tla~ll 189 (248)
T KOG2793|consen 166 ILASDVVYEEESFEGLVKTLAFLL 189 (248)
T ss_pred EEEeeeeecCCcchhHHHHHHHHH
Confidence 999999877665555555554443
No 259
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=96.24 E-value=0.0058 Score=49.11 Aligned_cols=77 Identities=18% Similarity=0.120 Sum_probs=56.4
Q ss_pred ccCCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC-C-CCCCCcceE
Q 029554 89 RKTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-P-LKESSLDLA 165 (191)
Q Consensus 89 ~~~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l-~-~~~~~fDlV 165 (191)
..++..|||+++++|.=+..+++... ...++++|+++.-+...+++..+ -...++.....|.... + .....||.|
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r--~g~~~v~~~~~D~~~~~~~~~~~~fd~V 160 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKR--LGVFNVIVINADARKLDPKKPESKFDRV 160 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHH--TT-SSEEEEESHHHHHHHHHHTTTEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHh--cCCceEEEEeeccccccccccccccchh
Confidence 56888999999999988888876543 57999999999999998888765 2344566665554433 1 223469999
Q ss_pred Ee
Q 029554 166 IS 167 (191)
Q Consensus 166 is 167 (191)
+.
T Consensus 161 lv 162 (283)
T PF01189_consen 161 LV 162 (283)
T ss_dssp EE
T ss_pred hc
Confidence 86
No 260
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.22 E-value=0.033 Score=44.81 Aligned_cols=90 Identities=16% Similarity=0.114 Sum_probs=67.2
Q ss_pred HHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC
Q 029554 78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP 156 (191)
Q Consensus 78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~ 156 (191)
..+.++.|. ..+.+..+|.--|.|..++.+.+.++ ..+++++|-++.+++.|++.... -..++.++.+.+..+.
T Consensus 12 l~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~---~~~r~~~v~~~F~~l~ 86 (314)
T COG0275 12 LNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKE---FDGRVTLVHGNFANLA 86 (314)
T ss_pred HHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhc---cCCcEEEEeCcHHHHH
Confidence 445555555 56778999999999999998888765 46799999999999999998753 3456888888766432
Q ss_pred -----CCCCCcceEEeCCccc
Q 029554 157 -----LKESSLDLAISCLGLH 172 (191)
Q Consensus 157 -----~~~~~fDlVis~~~l~ 172 (191)
...+++|.|+.-.++.
T Consensus 87 ~~l~~~~i~~vDGiL~DLGVS 107 (314)
T COG0275 87 EALKELGIGKVDGILLDLGVS 107 (314)
T ss_pred HHHHhcCCCceeEEEEeccCC
Confidence 2345788888765543
No 261
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.04 E-value=0.0094 Score=44.73 Aligned_cols=70 Identities=14% Similarity=0.037 Sum_probs=47.3
Q ss_pred ccCCCeEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEec-CCCCC--------CCC
Q 029554 89 RKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVG-DEEFL--------PLK 158 (191)
Q Consensus 89 ~~~~~~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~-d~~~l--------~~~ 158 (191)
.+|+.+|||+||.+|.+++-..++. |..-|.|+|+-.-. ....+.++++ |+..- .++
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~-------------p~~Ga~~i~~~dvtdp~~~~ki~e~lp 133 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE-------------PPEGATIIQGNDVTDPETYRKIFEALP 133 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc-------------CCCCcccccccccCCHHHHHHHHHhCC
Confidence 4578999999999999999887664 88899999974311 1112334444 33221 135
Q ss_pred CCCcceEEeCCcc
Q 029554 159 ESSLDLAISCLGL 171 (191)
Q Consensus 159 ~~~fDlVis~~~l 171 (191)
+...|+|+|-+.-
T Consensus 134 ~r~VdvVlSDMap 146 (232)
T KOG4589|consen 134 NRPVDVVLSDMAP 146 (232)
T ss_pred CCcccEEEeccCC
Confidence 6789999987654
No 262
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.90 E-value=0.046 Score=47.19 Aligned_cols=116 Identities=17% Similarity=0.161 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHhccc-CCCeEEEEcCCccHHHHHHhhc----CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeE
Q 029554 74 VDAVAENLLDRLEDCRK-TFPTALCLGGSLEAVRRLLRGR----GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFV 148 (191)
Q Consensus 74 ~~~~~~~l~~~l~~~~~-~~~~VLDlGcG~G~~~~~l~~~----~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~ 148 (191)
++.+...|+++.+.... ....|+-+|+|-|.+.....+. ...-++++++-+|..+--.+..-.+ .-..++.++
T Consensus 349 q~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~--~W~~~Vtii 426 (649)
T KOG0822|consen 349 QQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFE--CWDNRVTII 426 (649)
T ss_pred HHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchh--hhcCeeEEE
Confidence 34455666666664222 2446888999999887655331 2346899999999987666553221 123459999
Q ss_pred ecCCCCCCCCCCCcceEEeCC--cccCcCChHHHHHHHHhccCCC
Q 029554 149 VGDEEFLPLKESSLDLAISCL--GLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 149 ~~d~~~l~~~~~~fDlVis~~--~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
..|+..++.+..+.|++||-+ ++..=+=-+..|.-+.+.|||+
T Consensus 427 ~~DMR~w~ap~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpd 471 (649)
T KOG0822|consen 427 SSDMRKWNAPREQADIIVSELLGSFGDNELSPECLDGAQKFLKPD 471 (649)
T ss_pred eccccccCCchhhccchHHHhhccccCccCCHHHHHHHHhhcCCC
Confidence 999999885558899999843 2221112467888899999885
No 263
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.85 E-value=0.044 Score=41.46 Aligned_cols=100 Identities=15% Similarity=-0.023 Sum_probs=59.6
Q ss_pred ccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHH----H--HHHHhhhhccCCCCceeeEecCCCCCCCCCCC
Q 029554 89 RKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDML----K--LCKDAQQDAHNDNIETCFVVGDEEFLPLKESS 161 (191)
Q Consensus 89 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l----~--~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 161 (191)
.+++.+|+|+=.|.|++++.+... ++...|+++-+.+... + .......+ ....++..+-.+.-.++ +.+.
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e--~~~aN~e~~~~~~~A~~-~pq~ 122 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAARE--PVYANVEVIGKPLVALG-APQK 122 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhh--hhhhhhhhhCCcccccC-CCCc
Confidence 468899999999999999999764 4555677765554311 0 01001100 12223444444433444 4456
Q ss_pred cceEEeCCcccC-------cCChHHHHHHHHhccCCC
Q 029554 162 LDLAISCLGLHW-------TNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 162 fDlVis~~~l~~-------~~d~~~~l~~i~r~Lkpg 191 (191)
.|+++.+..-|- -.....+.+++.++||||
T Consensus 123 ~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPG 159 (238)
T COG4798 123 LDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPG 159 (238)
T ss_pred ccccccchhhhhhhccccCcchHHHHHHHHHHhcCCC
Confidence 777776443332 234567889999999997
No 264
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=95.66 E-value=0.068 Score=44.11 Aligned_cols=64 Identities=9% Similarity=0.073 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHhcccC-CCeEEEEcCCccHHHHHHhhc----C----CCceEEEEECChhHHHHHHHhhhh
Q 029554 74 VDAVAENLLDRLEDCRKT-FPTALCLGGSLEAVRRLLRGR----G----GIEKLIMMDTSYDMLKLCKDAQQD 137 (191)
Q Consensus 74 ~~~~~~~l~~~l~~~~~~-~~~VLDlGcG~G~~~~~l~~~----~----~~~~v~~vD~s~~~l~~a~~~~~~ 137 (191)
-+.++..++..+..+..| ...++|+|+|.|.++..+.+. . ...++..+++|++..+.=++....
T Consensus 59 Gella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 59 GELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 344566666666654444 347999999999998877643 2 357999999999988776666643
No 265
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.65 E-value=0.0012 Score=44.77 Aligned_cols=90 Identities=19% Similarity=0.100 Sum_probs=32.4
Q ss_pred EEEcCCccHHHHHHhhcCCC---ceEEEEECChh---HHHHHHHhhhhccCCCCceeeEecCCCC-CC-CCCCCcceEEe
Q 029554 96 LCLGGSLEAVRRLLRGRGGI---EKLIMMDTSYD---MLKLCKDAQQDAHNDNIETCFVVGDEEF-LP-LKESSLDLAIS 167 (191)
Q Consensus 96 LDlGcG~G~~~~~l~~~~~~---~~v~~vD~s~~---~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~-~~~~~fDlVis 167 (191)
||+|+..|..+..+++..+. .+++++|..+. ..+..++ . ....+++++.++... ++ ++.++||+|+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~----~~~~~~~~~~g~s~~~l~~~~~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-A----GLSDRVEFIQGDSPDFLPSLPDGPIDLIFI 75 (106)
T ss_dssp --------------------------EEEESS-------------G----GG-BTEEEEES-THHHHHHHHH--EEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-c----CCCCeEEEEEcCcHHHHHHcCCCCEEEEEE
Confidence 69999999998888764322 37999999995 2222222 1 223458888888653 21 23578999998
Q ss_pred CCcccCcCChHHHHHHHHhccCCC
Q 029554 168 CLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 168 ~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
-..-. -+.....+..+...|+||
T Consensus 76 Dg~H~-~~~~~~dl~~~~~~l~~g 98 (106)
T PF13578_consen 76 DGDHS-YEAVLRDLENALPRLAPG 98 (106)
T ss_dssp ES----HHHHHHHHHHHGGGEEEE
T ss_pred CCCCC-HHHHHHHHHHHHHHcCCC
Confidence 65321 223345566666666664
No 266
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.53 E-value=0.091 Score=35.84 Aligned_cols=32 Identities=19% Similarity=0.140 Sum_probs=26.1
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECC
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTS 124 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s 124 (191)
+....+|+|||+|.+.-.|...| -.=.|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EG--y~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEG--YPGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCC--CCccccccc
Confidence 45679999999999999998877 566777753
No 267
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=95.43 E-value=0.28 Score=38.41 Aligned_cols=94 Identities=15% Similarity=0.072 Sum_probs=47.6
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC-CCCCC-CCCcceEEeC
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE-FLPLK-ESSLDLAISC 168 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~-~l~~~-~~~fDlVis~ 168 (191)
.+.+||.+|=+.-. +..++-.++..+++.+|+++.+++..++..++ ...++..+..|+. .+|.+ -++||++++.
T Consensus 44 ~gk~il~lGDDDLt-SlA~al~~~~~~I~VvDiDeRll~fI~~~a~~---~gl~i~~~~~DlR~~LP~~~~~~fD~f~TD 119 (243)
T PF01861_consen 44 EGKRILFLGDDDLT-SLALALTGLPKRITVVDIDERLLDFINRVAEE---EGLPIEAVHYDLRDPLPEELRGKFDVFFTD 119 (243)
T ss_dssp TT-EEEEES-TT-H-HHHHHHHT--SEEEEE-S-HHHHHHHHHHHHH---HT--EEEE---TTS---TTTSS-BSEEEE-
T ss_pred cCCEEEEEcCCcHH-HHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHH---cCCceEEEEecccccCCHHHhcCCCEEEeC
Confidence 56789999854432 22333334568999999999999998877765 2334788888865 45522 3789999974
Q ss_pred CcccCcCChHHHHHHHHhccC
Q 029554 169 LGLHWTNDLPGAMIQVSIFLL 189 (191)
Q Consensus 169 ~~l~~~~d~~~~l~~i~r~Lk 189 (191)
=.-. .+-...++.+-...||
T Consensus 120 PPyT-~~G~~LFlsRgi~~Lk 139 (243)
T PF01861_consen 120 PPYT-PEGLKLFLSRGIEALK 139 (243)
T ss_dssp --SS-HHHHHHHHHHHHHTB-
T ss_pred CCCC-HHHHHHHHHHHHHHhC
Confidence 1100 1122345555555555
No 268
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=95.38 E-value=0.32 Score=38.32 Aligned_cols=98 Identities=20% Similarity=0.179 Sum_probs=63.7
Q ss_pred CCeEEEEcCCccHHHHHHhhc----CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC----CCCCCCCCcc
Q 029554 92 FPTALCLGGSLEAVRRLLRGR----GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE----FLPLKESSLD 163 (191)
Q Consensus 92 ~~~VLDlGcG~G~~~~~l~~~----~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~----~l~~~~~~fD 163 (191)
....+|+|+|+..=++.|.+. +...+++-+|+|...+....+.+.. ......+.-+++|.+ .+| ..+.==
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~-~y~~l~v~~l~~~~~~~La~~~-~~~~Rl 156 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILR-EYPGLEVNALCGDYELALAELP-RGGRRL 156 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHH-hCCCCeEeehhhhHHHHHhccc-CCCeEE
Confidence 457899999999877777554 3447899999999988766554432 123344666667754 233 222222
Q ss_pred eEEeCCcccCc--CChHHHHHHHHhccCCC
Q 029554 164 LAISCLGLHWT--NDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 164 lVis~~~l~~~--~d~~~~l~~i~r~Lkpg 191 (191)
+++...+|..+ ++-..++.+++.+|+||
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pG 186 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPG 186 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCc
Confidence 23334456554 24567899999999997
No 269
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.30 E-value=0.084 Score=42.22 Aligned_cols=70 Identities=14% Similarity=0.111 Sum_probs=51.8
Q ss_pred eEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC--CCCcceEEeCCcc
Q 029554 94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK--ESSLDLAISCLGL 171 (191)
Q Consensus 94 ~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~--~~~fDlVis~~~l 171 (191)
+|+|+-||.|.+..-+...+ ...+.++|+++..++..+.+... .....|+..+... .+.+|+|+...-.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G-~~~v~a~e~~~~a~~~~~~N~~~--------~~~~~Di~~~~~~~~~~~~D~l~~gpPC 72 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEANFPN--------KLIEGDITKIDEKDFIPDIDLLTGGFPC 72 (275)
T ss_pred cEEEEccCcchHHHHHHHcC-CEEEEEEeCCHHHHHHHHHhCCC--------CCccCccccCchhhcCCCCCEEEeCCCC
Confidence 58999999999988888765 56789999999999888776532 1455666655422 3579999986543
Q ss_pred c
Q 029554 172 H 172 (191)
Q Consensus 172 ~ 172 (191)
+
T Consensus 73 q 73 (275)
T cd00315 73 Q 73 (275)
T ss_pred h
Confidence 3
No 270
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.23 E-value=0.063 Score=38.87 Aligned_cols=94 Identities=13% Similarity=0.008 Sum_probs=59.7
Q ss_pred HHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCC
Q 029554 80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKE 159 (191)
Q Consensus 80 ~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 159 (191)
..+..+. ..+.++.+|+|+|.|......++.+ ...-+|++.++=.+...+-..-+ ......+.|..-|+-...+.+
T Consensus 63 nVLSll~--~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R-~g~~k~trf~RkdlwK~dl~d 138 (199)
T KOG4058|consen 63 NVLSLLR--GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWR-AGCAKSTRFRRKDLWKVDLRD 138 (199)
T ss_pred HHHHHcc--CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHH-Hhcccchhhhhhhhhhccccc
Confidence 4444444 4566889999999999987777655 46789999999887776533211 133455777777766555443
Q ss_pred CCcceEEeCCcccCcCChHH
Q 029554 160 SSLDLAISCLGLHWTNDLPG 179 (191)
Q Consensus 160 ~~fDlVis~~~l~~~~d~~~ 179 (191)
|..|+...+-.-++|+..
T Consensus 139 --y~~vviFgaes~m~dLe~ 156 (199)
T KOG4058|consen 139 --YRNVVIFGAESVMPDLED 156 (199)
T ss_pred --cceEEEeehHHHHhhhHH
Confidence 444554444444445443
No 271
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.16 E-value=0.082 Score=40.23 Aligned_cols=53 Identities=11% Similarity=0.065 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHH
Q 029554 76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (191)
Q Consensus 76 ~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~ 133 (191)
.+.++++... ..++..|||.=||+|..+......+ .+++|+|+++...+.|++
T Consensus 179 ~l~~~lI~~~---t~~gdiVlDpF~GSGTT~~aa~~l~--R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 179 ELIERLIKAS---TNPGDIVLDPFAGSGTTAVAAEELG--RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHH---S-TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHhh---hccceeeehhhhccChHHHHHHHcC--CeEEEEeCCHHHHHHhcC
Confidence 3444444332 4578999999999999998888877 889999999999998864
No 272
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=94.83 E-value=0.11 Score=42.78 Aligned_cols=85 Identities=15% Similarity=0.002 Sum_probs=42.6
Q ss_pred CCeEEEEcCCccHHHHHHhhc--------C--------CCceEEEEECChhHHHHHHHhhhhc-----cCCCCceeeEec
Q 029554 92 FPTALCLGGSLEAVRRLLRGR--------G--------GIEKLIMMDTSYDMLKLCKDAQQDA-----HNDNIETCFVVG 150 (191)
Q Consensus 92 ~~~VLDlGcG~G~~~~~l~~~--------~--------~~~~v~~vD~s~~~l~~a~~~~~~~-----~~~~~~~~~~~~ 150 (191)
.-+|+|+||..|.++..+... + |.-+|+-.|.-..-....-+.+... .....-+.-+.+
T Consensus 17 ~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvpg 96 (334)
T PF03492_consen 17 PFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVPG 96 (334)
T ss_dssp EEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEES
T ss_pred ceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecCc
Confidence 348999999999988776531 1 2347888896554333222222110 001111222234
Q ss_pred CCCCCCCCCCCcceEEeCCcccCcCC
Q 029554 151 DEEFLPLKESSLDLAISCLGLHWTND 176 (191)
Q Consensus 151 d~~~l~~~~~~fDlVis~~~l~~~~d 176 (191)
.+-.-=+|+++.|+++|..+|||+..
T Consensus 97 SFy~rLfP~~Svh~~~Ss~alHWLS~ 122 (334)
T PF03492_consen 97 SFYGRLFPSNSVHFGHSSYALHWLSQ 122 (334)
T ss_dssp -TTS--S-TT-EEEEEEES-TTB-SS
T ss_pred hhhhccCCCCceEEEEEechhhhccc
Confidence 44333368899999999999999854
No 273
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.81 E-value=0.14 Score=42.30 Aligned_cols=98 Identities=15% Similarity=0.089 Sum_probs=58.2
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCC-ceEEEEECChhHHHHHHHhhhhccCCCCceeeEecC----CCCCCCCCCCcceE
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGI-EKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGD----EEFLPLKESSLDLA 165 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d----~~~l~~~~~~fDlV 165 (191)
.+.+|||+|.|+|.-...+-...|. .+++.++.|+..-+....-... .......+...| -..+| +...|++|
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~n--v~t~~td~r~s~vt~dRl~lp-~ad~ytl~ 189 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAEN--VSTEKTDWRASDVTEDRLSLP-AADLYTLA 189 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhh--cccccCCCCCCccchhccCCC-ccceeehh
Confidence 4567999999999887777665553 5788899888765555433321 111122333333 23344 23567877
Q ss_pred EeCCcccCcCC---hHHHHHHHHhccCCC
Q 029554 166 ISCLGLHWTND---LPGAMIQVSIFLLPD 191 (191)
Q Consensus 166 is~~~l~~~~d---~~~~l~~i~r~Lkpg 191 (191)
+...-|-+... +...+..+..++.||
T Consensus 190 i~~~eLl~d~~ek~i~~~ie~lw~l~~~g 218 (484)
T COG5459 190 IVLDELLPDGNEKPIQVNIERLWNLLAPG 218 (484)
T ss_pred hhhhhhccccCcchHHHHHHHHHHhccCC
Confidence 76555444432 334677777777765
No 274
>PRK11524 putative methyltransferase; Provisional
Probab=94.73 E-value=0.14 Score=41.19 Aligned_cols=47 Identities=11% Similarity=0.031 Sum_probs=41.9
Q ss_pred ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhh
Q 029554 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD 137 (191)
Q Consensus 89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~ 137 (191)
..+++.|||-=||+|..+....+.+ .+++|+|++++.++.+++++..
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~lg--R~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKASG--RKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHcC--CCEEEEeCCHHHHHHHHHHHHh
Confidence 5688999999999999988887777 8999999999999999998753
No 275
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=94.69 E-value=0.14 Score=42.62 Aligned_cols=42 Identities=10% Similarity=0.067 Sum_probs=34.7
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHH
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~ 133 (191)
+-..|+|+|+|.|++++.+.=.+ ...|.++|.|....++|++
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence 45579999999999999997544 3789999999888777754
No 276
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=94.67 E-value=0.061 Score=41.31 Aligned_cols=60 Identities=17% Similarity=0.111 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhc--ccCCCeEEEEcCCccHHHHHHh--hcCCCceEEEEECChhHHHHHHHhh
Q 029554 76 AVAENLLDRLEDC--RKTFPTALCLGGSLEAVRRLLR--GRGGIEKLIMMDTSYDMLKLCKDAQ 135 (191)
Q Consensus 76 ~~~~~l~~~l~~~--~~~~~~VLDlGcG~G~~~~~l~--~~~~~~~v~~vD~s~~~l~~a~~~~ 135 (191)
.++.++..+.... ...+-++.|-+||.|++.-.+. .......|++-|+++++++.|+++.
T Consensus 34 RLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL 97 (246)
T PF11599_consen 34 RLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNL 97 (246)
T ss_dssp HHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhh
Confidence 4455555554332 2234489999999999866552 3334589999999999999998874
No 277
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=94.65 E-value=0.17 Score=42.96 Aligned_cols=54 Identities=9% Similarity=0.107 Sum_probs=41.8
Q ss_pred eEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEe
Q 029554 94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVV 149 (191)
Q Consensus 94 ~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~ 149 (191)
.|||+|.|||.++......+ ...|++++.-..|.+.+++.... +.-.+++.++.
T Consensus 69 ~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~k-ng~SdkI~vIn 122 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHK-NGMSDKINVIN 122 (636)
T ss_pred EEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHhc-CCCccceeeec
Confidence 58999999999988777666 46799999999999999887754 22234555544
No 278
>PHA01634 hypothetical protein
Probab=94.55 E-value=0.28 Score=34.68 Aligned_cols=47 Identities=11% Similarity=0.045 Sum_probs=39.7
Q ss_pred ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhh
Q 029554 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQ 136 (191)
Q Consensus 89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~ 136 (191)
.-.+.+|+|+|++-|..+..+.-++ ...|+++++++...+..++..+
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~G-AK~Vva~E~~~kl~k~~een~k 72 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLRG-ASFVVQYEKEEKLRKKWEEVCA 72 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhcC-ccEEEEeccCHHHHHHHHHHhh
Confidence 4467899999999999998887665 5789999999999998887654
No 279
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=94.33 E-value=0.4 Score=41.59 Aligned_cols=97 Identities=10% Similarity=-0.033 Sum_probs=59.2
Q ss_pred CchHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCC----CceEEEEECChhHHHHHHHhhhhccCCCC-c
Q 029554 70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG----IEKLIMMDTSYDMLKLCKDAQQDAHNDNI-E 144 (191)
Q Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~----~~~v~~vD~s~~~l~~a~~~~~~~~~~~~-~ 144 (191)
.++....-..+++..+.. +.+..+|+|-.||+|.+.....+... ...++|.|+++.....|+.+.-- +... .
T Consensus 166 GEfyTP~~v~~liv~~l~-~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~l--hgi~~~ 242 (489)
T COG0286 166 GEFYTPREVSELIVELLD-PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLIL--HGIEGD 242 (489)
T ss_pred CccCChHHHHHHHHHHcC-CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHH--hCCCcc
Confidence 445444333344444332 24566999999999987665543221 25699999999999999876532 1111 3
Q ss_pred eeeEecCCCCCC-C----CCCCcceEEeCC
Q 029554 145 TCFVVGDEEFLP-L----KESSLDLAISCL 169 (191)
Q Consensus 145 ~~~~~~d~~~l~-~----~~~~fDlVis~~ 169 (191)
.....+|...-| . ..+.||.|++|-
T Consensus 243 ~~i~~~dtl~~~~~~~~~~~~~~D~viaNP 272 (489)
T COG0286 243 ANIRHGDTLSNPKHDDKDDKGKFDFVIANP 272 (489)
T ss_pred ccccccccccCCcccccCCccceeEEEeCC
Confidence 455555543333 2 336799999973
No 280
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.31 E-value=0.26 Score=38.36 Aligned_cols=87 Identities=15% Similarity=0.078 Sum_probs=57.2
Q ss_pred CCeEEEEcCCccHHHHHHhhcC----C-----CceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC------
Q 029554 92 FPTALCLGGSLEAVRRLLRGRG----G-----IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP------ 156 (191)
Q Consensus 92 ~~~VLDlGcG~G~~~~~l~~~~----~-----~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~------ 156 (191)
-.+++|+++.+|.|++.|.+.. + ...+++||+.+-. ....+..+++|+....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-------------PI~GV~qlq~DIT~~stae~Ii 108 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-------------PIEGVIQLQGDITSASTAEAII 108 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-------------ccCceEEeecccCCHhHHHHHH
Confidence 3579999999999999987642 1 1239999986521 2334677778876532
Q ss_pred --CCCCCcceEEeCCc-----ccCcCCh------HHHHHHHHhccCCC
Q 029554 157 --LKESSLDLAISCLG-----LHWTNDL------PGAMIQVSIFLLPD 191 (191)
Q Consensus 157 --~~~~~fDlVis~~~-----l~~~~d~------~~~l~~i~r~Lkpg 191 (191)
|...+.|+|||-.+ +|.+++. .++|.-...+||||
T Consensus 109 ~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~G 156 (294)
T KOG1099|consen 109 EHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPG 156 (294)
T ss_pred HHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCC
Confidence 55668999999764 5544321 23444555778876
No 281
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=94.27 E-value=0.097 Score=42.42 Aligned_cols=99 Identities=16% Similarity=0.172 Sum_probs=63.1
Q ss_pred CeEEEEcCCccHHHHHHhhcC--------------------CCceEEEEECCh--hHHHHHHHhhhhc------------
Q 029554 93 PTALCLGGSLEAVRRLLRGRG--------------------GIEKLIMMDTSY--DMLKLCKDAQQDA------------ 138 (191)
Q Consensus 93 ~~VLDlGcG~G~~~~~l~~~~--------------------~~~~v~~vD~s~--~~l~~a~~~~~~~------------ 138 (191)
.+||+||.|.|.....++... +.-.++.+|+.+ ..+......+...
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 589999999986655554322 113899999876 4555555444321
Q ss_pred ---cCCCCceeeEecCCCCCCCCC-------CCcceEEeCCcccC-----cCChHHHHHHHHhccCCC
Q 029554 139 ---HNDNIETCFVVGDEEFLPLKE-------SSLDLAISCLGLHW-----TNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 139 ---~~~~~~~~~~~~d~~~l~~~~-------~~fDlVis~~~l~~-----~~d~~~~l~~i~r~Lkpg 191 (191)
....-++.|.+.|+..+..++ ...++|...+++.- +..-..+|.++..+++||
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~G 235 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPG 235 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCC
Confidence 112346788888877654221 24688877666652 234456888888888887
No 282
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.23 E-value=0.17 Score=39.44 Aligned_cols=95 Identities=13% Similarity=-0.001 Sum_probs=55.4
Q ss_pred HHHHHHHHh----cccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEec-CCC
Q 029554 79 ENLLDRLED----CRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVG-DEE 153 (191)
Q Consensus 79 ~~l~~~l~~----~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~-d~~ 153 (191)
..+.+.|.. +..+..++||||.|..-+-..+--+-=..+.+|.|+++..++.|+.......+....++.... |-.
T Consensus 62 h~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~ 141 (292)
T COG3129 62 HHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSD 141 (292)
T ss_pred HHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcc
Confidence 344444443 233455899999886544333322111378999999999999998877542122222333322 211
Q ss_pred ----CCCCCCCCcceEEeCCcccC
Q 029554 154 ----FLPLKESSLDLAISCLGLHW 173 (191)
Q Consensus 154 ----~l~~~~~~fDlVis~~~l~~ 173 (191)
.+--..+.||++.||--+|-
T Consensus 142 ~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 142 AIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred ccccccccccceeeeEecCCCcch
Confidence 11122467999999988774
No 283
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=94.09 E-value=0.35 Score=36.99 Aligned_cols=97 Identities=15% Similarity=0.056 Sum_probs=47.4
Q ss_pred CCCeEEEEcCCccHHHHHHhhc----CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-------C-C
Q 029554 91 TFPTALCLGGSLEAVRRLLRGR----GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-------L-K 158 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~----~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-------~-~ 158 (191)
.+..|+|+|.-.|..+..++.. ++..+|+++|+.-.-........ .....+++++++|..... . .
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~---hp~~~rI~~i~Gds~d~~~~~~v~~~~~ 108 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIES---HPMSPRITFIQGDSIDPEIVDQVRELAS 108 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-------TTEEEEES-SSSTHHHHTSGSS--
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhh---ccccCceEEEECCCCCHHHHHHHHHhhc
Confidence 4678999999999887766542 36689999999755443322111 123456999999855321 1 1
Q ss_pred CCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 159 ESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 159 ~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
...-.+|+ --+-|...+....|.....+++||
T Consensus 109 ~~~~vlVi-lDs~H~~~hvl~eL~~y~plv~~G 140 (206)
T PF04989_consen 109 PPHPVLVI-LDSSHTHEHVLAELEAYAPLVSPG 140 (206)
T ss_dssp --SSEEEE-ESS----SSHHHHHHHHHHT--TT
T ss_pred cCCceEEE-ECCCccHHHHHHHHHHhCccCCCC
Confidence 12233444 333344456677888888888876
No 284
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=93.83 E-value=0.57 Score=39.10 Aligned_cols=94 Identities=18% Similarity=0.145 Sum_probs=58.8
Q ss_pred cCCCeEEEEcCCc-cHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-----C-CC-CCCC
Q 029554 90 KTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-----L-PL-KESS 161 (191)
Q Consensus 90 ~~~~~VLDlGcG~-G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-----l-~~-~~~~ 161 (191)
.++.+||.+|||. |..+..+++.....+++++|.++..++.+++... ..++...... + .+ ....
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~--------~~vi~~~~~~~~~~~l~~~~~~~~ 254 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLG--------AETINFEEVDDVVEALRELTGGRG 254 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC--------cEEEcCCcchHHHHHHHHHcCCCC
Confidence 4677899999987 7777777776544579999999999888876421 1111111110 0 11 2236
Q ss_pred cceEEeCCcc---------------cCcCChHHHHHHHHhccCCC
Q 029554 162 LDLAISCLGL---------------HWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 162 fDlVis~~~l---------------~~~~d~~~~l~~i~r~Lkpg 191 (191)
+|+|+....- +-..|....+.++.++|+|+
T Consensus 255 ~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 299 (386)
T cd08283 255 PDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKG 299 (386)
T ss_pred CCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccC
Confidence 9999875421 11244566788888888764
No 285
>PTZ00357 methyltransferase; Provisional
Probab=93.77 E-value=0.49 Score=42.57 Aligned_cols=97 Identities=12% Similarity=0.045 Sum_probs=58.9
Q ss_pred eEEEEcCCccHHHHHHhhc----CCCceEEEEECChhHHHHHHHh---hhhccCC----CCceeeEecCCCCCCCCC---
Q 029554 94 TALCLGGSLEAVRRLLRGR----GGIEKLIMMDTSYDMLKLCKDA---QQDAHND----NIETCFVVGDEEFLPLKE--- 159 (191)
Q Consensus 94 ~VLDlGcG~G~~~~~l~~~----~~~~~v~~vD~s~~~l~~a~~~---~~~~~~~----~~~~~~~~~d~~~l~~~~--- 159 (191)
.|+-+|+|-|.+.....+. +-..+++++|-++........+ ...|.+. ...+.++..|+..+..+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999886655332 3345899999996633333222 2344332 346899999988764321
Q ss_pred --------CCcceEEeCC--cccCcCChHHHHHHHHhccCC
Q 029554 160 --------SSLDLAISCL--GLHWTNDLPGAMIQVSIFLLP 190 (191)
Q Consensus 160 --------~~fDlVis~~--~l~~~~d~~~~l~~i~r~Lkp 190 (191)
+++|+|||-+ ++-.=+=-++.|.-+.+.||+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKd 823 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLED 823 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhh
Confidence 4799999832 222111124566666666653
No 286
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=93.60 E-value=0.096 Score=41.79 Aligned_cols=39 Identities=15% Similarity=0.047 Sum_probs=30.6
Q ss_pred ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHH
Q 029554 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDML 128 (191)
Q Consensus 89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l 128 (191)
...+.+|||+|||.|.-.......+ ...++..|.|...+
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVL 152 (282)
T ss_pred EecCceeEecCCcccccchhhhhhc-cceeeeEecchhhe
Confidence 4467899999999998887776544 26788888888776
No 287
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=93.57 E-value=0.12 Score=44.41 Aligned_cols=86 Identities=13% Similarity=0.074 Sum_probs=57.1
Q ss_pred CeEEEEcCCccHHHHHHhhcCCCceEEEEECChh----HHHHHHHhhhhccCCCCceeeEecC-CCCCCCCCCCcceEEe
Q 029554 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYD----MLKLCKDAQQDAHNDNIETCFVVGD-EEFLPLKESSLDLAIS 167 (191)
Q Consensus 93 ~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~----~l~~a~~~~~~~~~~~~~~~~~~~d-~~~l~~~~~~fDlVis 167 (191)
..|+|+.+|.|.++..|.+.. |..+..-+. .+...-++. ..-...| .|.++.-+.+||+|.+
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~----VWVMNVVP~~~~ntL~vIydRG---------LIG~yhDWCE~fsTYPRTYDLlHA 433 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDP----VWVMNVVPVSGPNTLPVIYDRG---------LIGVYHDWCEAFSTYPRTYDLLHA 433 (506)
T ss_pred eeeeeecccccHHHHHhccCC----ceEEEecccCCCCcchhhhhcc---------cchhccchhhccCCCCcchhheeh
Confidence 469999999999999998742 444443332 122111110 1112234 4566656689999999
Q ss_pred CCcccCcC---ChHHHHHHHHhccCCC
Q 029554 168 CLGLHWTN---DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 168 ~~~l~~~~---d~~~~l~~i~r~Lkpg 191 (191)
+..+.... +...+|-|+-|+|+|+
T Consensus 434 ~~lfs~~~~rC~~~~illEmDRILRP~ 460 (506)
T PF03141_consen 434 DGLFSLYKDRCEMEDILLEMDRILRPG 460 (506)
T ss_pred hhhhhhhcccccHHHHHHHhHhhcCCC
Confidence 98776543 5788999999999996
No 288
>PRK13699 putative methylase; Provisional
Probab=93.47 E-value=0.35 Score=37.57 Aligned_cols=47 Identities=6% Similarity=-0.090 Sum_probs=41.3
Q ss_pred ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhh
Q 029554 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD 137 (191)
Q Consensus 89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~ 137 (191)
..++..|||-=||+|..+....+.+ .+++|+|+++...+.+.+++..
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~~--r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQSG--RRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHcC--CCEEEEecCHHHHHHHHHHHHH
Confidence 4578899999999999988887777 8999999999999999888754
No 289
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.28 E-value=0.55 Score=38.72 Aligned_cols=72 Identities=19% Similarity=0.201 Sum_probs=47.2
Q ss_pred ccCCCeEEEEcCC-ccHHHHHHhh-cCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEec-CCCCCCCCCCCcceE
Q 029554 89 RKTFPTALCLGGS-LEAVRRLLRG-RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVG-DEEFLPLKESSLDLA 165 (191)
Q Consensus 89 ~~~~~~VLDlGcG-~G~~~~~l~~-~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~-d~~~l~~~~~~fDlV 165 (191)
..|+.+|+=+|+| .|..+..+++ .+ .+|+++|.|++-++.+++-.. ..++.. |.+..+.-.+.||+|
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lGA--------d~~i~~~~~~~~~~~~~~~d~i 233 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLGA--------DHVINSSDSDALEAVKEIADAI 233 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHhCC--------cEEEEcCCchhhHHhHhhCcEE
Confidence 4578888888776 5567777777 45 999999999999988876532 122332 222222111239999
Q ss_pred EeCCc
Q 029554 166 ISCLG 170 (191)
Q Consensus 166 is~~~ 170 (191)
+..-.
T Consensus 234 i~tv~ 238 (339)
T COG1064 234 IDTVG 238 (339)
T ss_pred EECCC
Confidence 98765
No 290
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=93.13 E-value=0.45 Score=37.35 Aligned_cols=70 Identities=16% Similarity=0.166 Sum_probs=51.8
Q ss_pred hhcCCCchHHHHHHHHHHHHHHhc-ccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChh----HHHHHHHh
Q 029554 65 WLTRPNDSFVDAVAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYD----MLKLCKDA 134 (191)
Q Consensus 65 ~~y~~~~~~~~~~~~~l~~~l~~~-~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~----~l~~a~~~ 134 (191)
..|.-++.++..++..++--+..+ ..|+.+||-||++.|....++.+. +|..-|++++.|.. ++..|+++
T Consensus 129 vEyRVWnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR 204 (317)
T KOG1596|consen 129 VEYRVWNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR 204 (317)
T ss_pred EEEEEeChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc
Confidence 346667777888777776655553 358889999999999998888775 56778999999985 44444443
No 291
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=92.81 E-value=0.28 Score=35.21 Aligned_cols=74 Identities=20% Similarity=0.232 Sum_probs=44.2
Q ss_pred eEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--CCCCCcceEEeCCcccCcCC------hH---HHHHHHH
Q 029554 117 KLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LKESSLDLAISCLGLHWTND------LP---GAMIQVS 185 (191)
Q Consensus 117 ~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~fDlVis~~~l~~~~d------~~---~~l~~i~ 185 (191)
+|+++|+-+..++..+++..+. ....++.++..+=+.+. .+++++|+|+-|++.---.| +. .++..+.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~-~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al 79 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEA-GLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAAL 79 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHT-T-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhc-CCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHH
Confidence 5899999999999999998762 22346888876644332 23358999998866322222 33 4566666
Q ss_pred hccCCC
Q 029554 186 IFLLPD 191 (191)
Q Consensus 186 r~Lkpg 191 (191)
++|+||
T Consensus 80 ~lL~~g 85 (140)
T PF06962_consen 80 ELLKPG 85 (140)
T ss_dssp HHEEEE
T ss_pred HhhccC
Confidence 666664
No 292
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=92.67 E-value=0.76 Score=35.68 Aligned_cols=93 Identities=11% Similarity=0.129 Sum_probs=53.0
Q ss_pred HHHHHHHHHhhhhcCCCchHHH-HHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHH
Q 029554 54 HLKRKQRDRAAWLTRPNDSFVD-AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCK 132 (191)
Q Consensus 54 ~~~~~~~~~~a~~y~~~~~~~~-~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~ 132 (191)
+.+..|+-+++....+ +|+-+ .+.+.+......+ ..+-|.+||.|+|..++.+...+ ..++..++.+...+.-.+
T Consensus 15 e~i~lYRLqA~K~LSQ-NfLMD~~lT~KIvK~A~~~--~~~~v~eIgPgpggitR~il~a~-~~RL~vVE~D~RFip~LQ 90 (326)
T KOG0821|consen 15 EIIKLYRLQAAKQLSQ-NFLMDLRLTDKIVKKAGNL--TNAYVYEIGPGPGGITRSILNAD-VARLLVVEKDTRFIPGLQ 90 (326)
T ss_pred HHHHHHHHHHHHHHhH-hHHhhhHHHHHHHHhcccc--ccceeEEecCCCCchhHHHHhcc-hhheeeeeeccccChHHH
Confidence 3444454455433222 23222 2334444333322 34569999999999999998764 468889999887665554
Q ss_pred HhhhhccCCCCceeeEecCCC
Q 029554 133 DAQQDAHNDNIETCFVVGDEE 153 (191)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~d~~ 153 (191)
--.+. ...+..++.+|+.
T Consensus 91 ~L~EA---a~~~~~IHh~D~L 108 (326)
T KOG0821|consen 91 MLSEA---APGKLRIHHGDVL 108 (326)
T ss_pred HHhhc---CCcceEEeccccc
Confidence 32221 2234555555543
No 293
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=92.39 E-value=0.3 Score=39.35 Aligned_cols=101 Identities=19% Similarity=0.156 Sum_probs=70.4
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhc--cCCCCceeeEecC-CCCCC-CCCCCcceEE
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA--HNDNIETCFVVGD-EEFLP-LKESSLDLAI 166 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~--~~~~~~~~~~~~d-~~~l~-~~~~~fDlVi 166 (191)
.+.+||-||-|.|...+....+-...++..+|+....++..++-.+.. +-...++.+..+| +..+. .+.++||+|+
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii 200 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVII 200 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEE
Confidence 356899999999999887777655689999999999999988766542 2234567888887 33222 3478999998
Q ss_pred eCCcccCcC----ChHHHHHHHHhccCCC
Q 029554 167 SCLGLHWTN----DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 167 s~~~l~~~~----d~~~~l~~i~r~Lkpg 191 (191)
.-..=.-.+ =...++.-+.+.||||
T Consensus 201 ~dssdpvgpa~~lf~~~~~~~v~~aLk~d 229 (337)
T KOG1562|consen 201 TDSSDPVGPACALFQKPYFGLVLDALKGD 229 (337)
T ss_pred EecCCccchHHHHHHHHHHHHHHHhhCCC
Confidence 643311111 0234677788888876
No 294
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=91.89 E-value=0.54 Score=39.02 Aligned_cols=92 Identities=12% Similarity=-0.017 Sum_probs=59.7
Q ss_pred CCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC-CCCCcceEEeCCc
Q 029554 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL-KESSLDLAISCLG 170 (191)
Q Consensus 92 ~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~-~~~~fDlVis~~~ 170 (191)
..+|||-=||+|.=+..++...+..+++.-|+|+..++..+++... |...+...+..|...+-. ....||+|=
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~--N~~~~~~v~n~DAN~lm~~~~~~fd~ID---- 126 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRL--NSGEDAEVINKDANALLHELHRAFDVID---- 126 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHh--cCcccceeecchHHHHHHhcCCCccEEe----
Confidence 5689999999998887776655455899999999999999998875 434445555555443211 125677773
Q ss_pred ccCcCChHHHHHHHHhccC
Q 029554 171 LHWTNDLPGAMIQVSIFLL 189 (191)
Q Consensus 171 l~~~~d~~~~l~~i~r~Lk 189 (191)
+.-+..+..++....+.++
T Consensus 127 iDPFGSPaPFlDaA~~s~~ 145 (380)
T COG1867 127 IDPFGSPAPFLDAALRSVR 145 (380)
T ss_pred cCCCCCCchHHHHHHHHhh
Confidence 3333344445554444443
No 295
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=91.61 E-value=2 Score=37.59 Aligned_cols=92 Identities=14% Similarity=0.108 Sum_probs=56.5
Q ss_pred cCCCeEEEEcCCccHH-HHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-----------CC-
Q 029554 90 KTFPTALCLGGSLEAV-RRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-----------LP- 156 (191)
Q Consensus 90 ~~~~~VLDlGcG~G~~-~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-----------l~- 156 (191)
.++.+|+=+|||.=.+ +...++... +.|+++|.++.-++++++-. ..+...+..+ +.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aeslG---------A~~v~i~~~e~~~~~~gya~~~s~ 232 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVESMG---------AEFLELDFEEEGGSGDGYAKVMSE 232 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHcC---------CeEEEeccccccccccchhhhcch
Confidence 3678999999997544 444444332 58999999999988887632 1111111100 00
Q ss_pred ---------CCC--CCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 157 ---------LKE--SSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 157 ---------~~~--~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
+.+ +.+|+||.......-+.+..+.++..+.+|||
T Consensus 233 ~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpG 278 (509)
T PRK09424 233 EFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPG 278 (509)
T ss_pred hHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCC
Confidence 011 46999998876544334444458888888876
No 296
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.25 E-value=0.024 Score=41.25 Aligned_cols=40 Identities=18% Similarity=0.158 Sum_probs=34.1
Q ss_pred CCCCCCCCCCcceEEeCCcccCcC--ChHHHHHHHHhccCCC
Q 029554 152 EEFLPLKESSLDLAISCLGLHWTN--DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 152 ~~~l~~~~~~fDlVis~~~l~~~~--d~~~~l~~i~r~Lkpg 191 (191)
....+|.+++.|+|.+..++.|+. ....+++++.++||||
T Consensus 38 s~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~ 79 (185)
T COG4627 38 SNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPG 79 (185)
T ss_pred hhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcC
Confidence 345678899999999999999874 5567899999999996
No 297
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=90.97 E-value=0.89 Score=38.45 Aligned_cols=76 Identities=13% Similarity=0.030 Sum_probs=55.1
Q ss_pred ccCCCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC---CCCCCcce
Q 029554 89 RKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP---LKESSLDL 164 (191)
Q Consensus 89 ~~~~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~---~~~~~fDl 164 (191)
+.++.+|||+++.+|.=+-+++.. .....+++.|.+..-+...++.+.+ -+..++..+..|...+| ++. +||-
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~r--lGv~ntiv~n~D~~ef~~~~~~~-~fDR 315 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHR--LGVTNTIVSNYDGREFPEKEFPG-SFDR 315 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHH--hCCCceEEEccCcccccccccCc-ccce
Confidence 668889999999998665555432 1235899999999998888887765 23456667777765554 443 8999
Q ss_pred EEe
Q 029554 165 AIS 167 (191)
Q Consensus 165 Vis 167 (191)
|+.
T Consensus 316 VLL 318 (460)
T KOG1122|consen 316 VLL 318 (460)
T ss_pred eee
Confidence 984
No 298
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=90.59 E-value=2.4 Score=35.13 Aligned_cols=87 Identities=28% Similarity=0.263 Sum_probs=56.7
Q ss_pred CCCeEEEEcCCc-cHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC-C-----CCCCC-CCc
Q 029554 91 TFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE-F-----LPLKE-SSL 162 (191)
Q Consensus 91 ~~~~VLDlGcG~-G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~-~-----l~~~~-~~f 162 (191)
++.+|+=+|||+ |.++..+++..+..+|+++|.++.-++.|++.... .......+ . ..... ..+
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~--------~~~~~~~~~~~~~~~~~~t~g~g~ 239 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA--------DVVVNPSEDDAGAEILELTGGRGA 239 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC--------eEeecCccccHHHHHHHHhCCCCC
Confidence 344899999996 56666677777778999999999999999874421 11111111 0 11122 369
Q ss_pred ceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 163 DLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 163 DlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
|+|+=..+ ...++.++.++++|+
T Consensus 240 D~vie~~G------~~~~~~~ai~~~r~g 262 (350)
T COG1063 240 DVVIEAVG------SPPALDQALEALRPG 262 (350)
T ss_pred CEEEECCC------CHHHHHHHHHHhcCC
Confidence 99987655 244677777777764
No 299
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=90.15 E-value=0.88 Score=38.94 Aligned_cols=85 Identities=19% Similarity=0.103 Sum_probs=51.4
Q ss_pred CCCeEEEEcCCccHHHHHH--hhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecC----CCCCCCC-CCCcc
Q 029554 91 TFPTALCLGGSLEAVRRLL--RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGD----EEFLPLK-ESSLD 163 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l--~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d----~~~l~~~-~~~fD 163 (191)
.+..+.|+|.|.|.-...+ .-+.....++.||.|..|.....+.... .......+.-. -..+|.. ...||
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~---~~~~g~~~v~~~~~~r~~~pi~~~~~yD 276 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD---GSHIGEPIVRKLVFHRQRLPIDIKNGYD 276 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcC---hhhcCchhccccchhcccCCCCccccee
Confidence 3456788888766443333 2233357899999999999988776642 11111111111 1123322 34599
Q ss_pred eEEeCCcccCcCChH
Q 029554 164 LAISCLGLHWTNDLP 178 (191)
Q Consensus 164 lVis~~~l~~~~d~~ 178 (191)
+|++.+.+++..+..
T Consensus 277 lvi~ah~l~~~~s~~ 291 (491)
T KOG2539|consen 277 LVICAHKLHELGSKF 291 (491)
T ss_pred eEEeeeeeeccCCch
Confidence 999999999986543
No 300
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=89.93 E-value=0.92 Score=36.05 Aligned_cols=36 Identities=8% Similarity=0.138 Sum_probs=29.5
Q ss_pred cCCCeEEEEcCCccHHHHHHhhcC-----CCceEEEEECCh
Q 029554 90 KTFPTALCLGGSLEAVRRLLRGRG-----GIEKLIMMDTSY 125 (191)
Q Consensus 90 ~~~~~VLDlGcG~G~~~~~l~~~~-----~~~~v~~vD~s~ 125 (191)
.+...++|+|||.|.++.++.... +...++.+|-..
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 456689999999999999998765 456899999754
No 301
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=88.19 E-value=2 Score=36.04 Aligned_cols=137 Identities=8% Similarity=-0.063 Sum_probs=75.6
Q ss_pred cccCHHHHHHHHH-HhhhhcCCCchHHHHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhH
Q 029554 49 SIFDRHLKRKQRD-RAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDM 127 (191)
Q Consensus 49 ~~~d~~~~~~~~~-~~a~~y~~~~~~~~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~ 127 (191)
.+.|+..++.+|. ..++.|.+.. .+-...+.+.+. ..+.+...|+|+|-|.....++..+.+..-+|+++...-
T Consensus 154 sipd~~~L~~hYk~~ss~~YGE~~---~~ql~si~dEl~--~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~p 228 (419)
T KOG3924|consen 154 SIPDPAILNQHYKSFSSETYGETQ---LEQLRSIVDELK--LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKP 228 (419)
T ss_pred ccCCHHHHHHhhccccccchhhhh---HHHHHHHHHHhc--cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCc
Confidence 4678877774444 3344444421 111223444444 457778899999999999998887767788888887654
Q ss_pred HHHHHHhhh-------hccCCCCceeeEecCCCCCC---CCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 128 LKLCKDAQQ-------DAHNDNIETCFVVGDEEFLP---LKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 128 l~~a~~~~~-------~~~~~~~~~~~~~~d~~~l~---~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
-+.+..+.. ..+.....+..+.+++..-. .-....++|++|.+.-- +++..-+.++..-+++|
T Consensus 229 S~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~Fd-p~L~lr~~eil~~ck~g 301 (419)
T KOG3924|consen 229 SQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEIQTEATVIFVNNVAFD-PELKLRSKEILQKCKDG 301 (419)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHHhhcceEEEEecccCC-HHHHHhhHHHHhhCCCc
Confidence 433332211 12233344566666544211 11245788888776542 22222333554444443
No 302
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=87.28 E-value=0.58 Score=37.87 Aligned_cols=73 Identities=10% Similarity=-0.040 Sum_probs=48.8
Q ss_pred CCCeEEEEcCCccHHHH-HHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEE
Q 029554 91 TFPTALCLGGSLEAVRR-LLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAI 166 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~-~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVi 166 (191)
.+..|+|+=+|-|+++. .|...+ ...|+++|.+|..++..+..+.. ++......++.+|....- +....|-|.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~ag-Ak~V~A~EwNp~svEaLrR~~~~-N~V~~r~~i~~gd~R~~~-~~~~AdrVn 267 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAG-AKTVFACEWNPWSVEALRRNAEA-NNVMDRCRITEGDNRNPK-PRLRADRVN 267 (351)
T ss_pred ccchhhhhhcccceEEeehhhccC-ccEEEEEecCHHHHHHHHHHHHh-cchHHHHHhhhccccccC-ccccchhee
Confidence 34689999999999998 555543 57899999999999998877654 122233444444433322 334555554
No 303
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=87.16 E-value=2.5 Score=35.47 Aligned_cols=93 Identities=12% Similarity=-0.050 Sum_probs=57.6
Q ss_pred CCeEEEEcCCccHHHHHHhhc-CCCceEEEEECChhHHHHHHHhhhhccCCCC-ceeeEecCCCCC-CCCCCCcceEEeC
Q 029554 92 FPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFL-PLKESSLDLAISC 168 (191)
Q Consensus 92 ~~~VLDlGcG~G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~-~~~~~~~d~~~l-~~~~~~fDlVis~ 168 (191)
.-+|||.=+|+|.=+..++.. ....+|+.-|+|+..++..+++.+. ++... .+.+...|+..+ ......||+|=
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~-N~~~~~~~~v~~~DAn~ll~~~~~~fD~ID-- 126 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLEL-NGLEDERIEVSNMDANVLLYSRQERFDVID-- 126 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHH-CT-SGCCEEEEES-HHHHHCHSTT-EEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhh-ccccCceEEEehhhHHHHhhhccccCCEEE--
Confidence 458999999999777766655 4457999999999999999998765 22222 466667775532 12356799984
Q ss_pred CcccCcCChHHHHHHHHhccC
Q 029554 169 LGLHWTNDLPGAMIQVSIFLL 189 (191)
Q Consensus 169 ~~l~~~~d~~~~l~~i~r~Lk 189 (191)
|.-...+..++....+.++
T Consensus 127 --lDPfGSp~pfldsA~~~v~ 145 (377)
T PF02005_consen 127 --LDPFGSPAPFLDSALQAVK 145 (377)
T ss_dssp --E--SS--HHHHHHHHHHEE
T ss_pred --eCCCCCccHhHHHHHHHhh
Confidence 3333455666666665554
No 304
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=86.45 E-value=5.1 Score=32.70 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=29.4
Q ss_pred CCCeEEEEcCC-ccHHHHHHhhcCCCceEEEEECChhHHHHHHH
Q 029554 91 TFPTALCLGGS-LEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (191)
Q Consensus 91 ~~~~VLDlGcG-~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~ 133 (191)
++.+||=.||| .|..+..+++.....+++++|.++.-++.+++
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence 57788888875 23344444444333479999999988888765
No 305
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=86.40 E-value=1.7 Score=31.14 Aligned_cols=38 Identities=8% Similarity=0.064 Sum_probs=24.7
Q ss_pred EEcCCcc--HHHHHHh--hcCCCceEEEEECChhHHHHHHHh
Q 029554 97 CLGGSLE--AVRRLLR--GRGGIEKLIMMDTSYDMLKLCKDA 134 (191)
Q Consensus 97 DlGcG~G--~~~~~l~--~~~~~~~v~~vD~s~~~l~~a~~~ 134 (191)
|||++.| .....+. ..++..+|+++|+++..++..++.
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5555442 345668999999999998888777
No 306
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=86.32 E-value=2.5 Score=35.57 Aligned_cols=45 Identities=9% Similarity=-0.092 Sum_probs=35.9
Q ss_pred ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhh
Q 029554 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ 135 (191)
Q Consensus 89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~ 135 (191)
..++.+||-|.+|.......|...- .+|++||+|+..+...+=+.
T Consensus 33 i~~~d~vl~ItSaG~N~L~yL~~~P--~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 33 IGPDDRVLTITSAGCNALDYLLAGP--KRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred CCCCCeEEEEccCCchHHHHHhcCC--ceEEEEeCCHHHHHHHHHHH
Confidence 4578899999988887777776643 89999999999877776544
No 307
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=86.25 E-value=3.7 Score=37.03 Aligned_cols=102 Identities=12% Similarity=-0.021 Sum_probs=56.6
Q ss_pred cCCCeEEEEcCCccHHHHHHhhc-------CC-----CceEEEEECCh---hHHHHHHHh-----------hhhccC---
Q 029554 90 KTFPTALCLGGSLEAVRRLLRGR-------GG-----IEKLIMMDTSY---DMLKLCKDA-----------QQDAHN--- 140 (191)
Q Consensus 90 ~~~~~VLDlGcG~G~~~~~l~~~-------~~-----~~~v~~vD~s~---~~l~~a~~~-----------~~~~~~--- 140 (191)
...-+|||+|-|+|.+.....+. .+ .-+++.+|..+ ..+..+.+. ...|..
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 34468999999999875544321 12 34899999644 333222211 111111
Q ss_pred ---------CCCceeeEecCCCC-CCCCCCCcceEEeC-CcccCcCCh--HHHHHHHHhccCCC
Q 029554 141 ---------DNIETCFVVGDEEF-LPLKESSLDLAISC-LGLHWTNDL--PGAMIQVSIFLLPD 191 (191)
Q Consensus 141 ---------~~~~~~~~~~d~~~-l~~~~~~fDlVis~-~~l~~~~d~--~~~l~~i~r~Lkpg 191 (191)
.........+|+.+ ++--...||+|+.- ++-..-++. ..++.++.++++||
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~ 199 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPG 199 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCC
Confidence 11234455567542 22122569999863 333333333 57899999999986
No 308
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=85.94 E-value=3.1 Score=36.34 Aligned_cols=90 Identities=10% Similarity=0.012 Sum_probs=55.2
Q ss_pred CCCeEEEEcCCcc-HHHHHHhh-cCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC--------------
Q 029554 91 TFPTALCLGGSLE-AVRRLLRG-RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-------------- 154 (191)
Q Consensus 91 ~~~~VLDlGcG~G-~~~~~l~~-~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-------------- 154 (191)
++.+||=+|||.= .....++. .+ ..|+++|.++.-++.+++-- ..++..|..+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a~~lG---------a~~v~v~~~e~g~~~~gYa~~~s~ 231 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQSMG---------AEFLELDFKEEGGSGDGYAKVMSE 231 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHcC---------CeEEeccccccccccccceeecCH
Confidence 5679999999865 33333333 34 67999999999877776521 1111111100
Q ss_pred ---------CCCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 155 ---------LPLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 155 ---------l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
++-.-..+|+||.+.-+.-.+.+.-+.+++.+.+|||
T Consensus 232 ~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpG 277 (511)
T TIGR00561 232 EFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAG 277 (511)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCC
Confidence 1101246999988775555445555677778888876
No 309
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.84 E-value=5.2 Score=32.40 Aligned_cols=78 Identities=15% Similarity=0.068 Sum_probs=55.9
Q ss_pred CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554 91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L 157 (191)
Q Consensus 91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~ 157 (191)
.+..||=-|.|.| .++..+++++ +.++..|+++...++..+..+. . .++.....|+.... -
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg--~~~vl~Din~~~~~etv~~~~~--~--g~~~~y~cdis~~eei~~~a~~Vk~ 110 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRG--AKLVLWDINKQGNEETVKEIRK--I--GEAKAYTCDISDREEIYRLAKKVKK 110 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhC--CeEEEEeccccchHHHHHHHHh--c--CceeEEEecCCCHHHHHHHHHHHHH
Confidence 4667888888877 3456677877 7899999999888777776653 1 25666667765432 2
Q ss_pred CCCCcceEEeCCcccCc
Q 029554 158 KESSLDLAISCLGLHWT 174 (191)
Q Consensus 158 ~~~~fDlVis~~~l~~~ 174 (191)
+-|..|++|.|.++-+.
T Consensus 111 e~G~V~ILVNNAGI~~~ 127 (300)
T KOG1201|consen 111 EVGDVDILVNNAGIVTG 127 (300)
T ss_pred hcCCceEEEeccccccC
Confidence 34789999999887654
No 310
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=84.97 E-value=10 Score=30.40 Aligned_cols=43 Identities=23% Similarity=0.176 Sum_probs=30.5
Q ss_pred cCCCeEEEEcCC-ccHHHHHHhhcCCCceEEEEECChhHHHHHHH
Q 029554 90 KTFPTALCLGGS-LEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (191)
Q Consensus 90 ~~~~~VLDlGcG-~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~ 133 (191)
.++.+||..|+| .|..+..+++.. ..++++++.++...+.+++
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH
Confidence 356788888876 366666665543 2679999999988877754
No 311
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.91 E-value=2.3 Score=34.88 Aligned_cols=45 Identities=22% Similarity=0.268 Sum_probs=37.0
Q ss_pred ccCCCeEEEEcCCc-cHHHHHHhhcCCCceEEEEECChhHHHHHHH
Q 029554 89 RKTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (191)
Q Consensus 89 ~~~~~~VLDlGcG~-G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~ 133 (191)
-..+.+||-+|+|+ |..+...++.....+|+.+|+++.-++.|++
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 34678999999996 4555566666667899999999999999987
No 312
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=84.84 E-value=3.3 Score=30.05 Aligned_cols=34 Identities=18% Similarity=0.018 Sum_probs=23.9
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECC
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTS 124 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s 124 (191)
..+-|||+|=|+|..=-+|.+.+|..+++++|-.
T Consensus 28 ~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~ 61 (160)
T PF12692_consen 28 LPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRA 61 (160)
T ss_dssp --S-EEEE--TTSHHHHHHHHH--SS-EEEEESS
T ss_pred CCCceEEeccCCCccHHHHHHhCCCCeEEEEeee
Confidence 3467999999999999999999999999999964
No 313
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=83.96 E-value=5.8 Score=31.76 Aligned_cols=68 Identities=19% Similarity=0.137 Sum_probs=46.0
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecC-CCCCCCCCCCcceEEeCC
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGD-EEFLPLKESSLDLAISCL 169 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d-~~~l~~~~~~fDlVis~~ 169 (191)
++...+|+|+.+|.++-.|.+++ -.|+++|-.+ |.+... ....++.+..| +..-| .....|..+|..
T Consensus 211 ~~M~avDLGAcPGGWTyqLVkr~--m~V~aVDng~-ma~sL~--------dtg~v~h~r~DGfk~~P-~r~~idWmVCDm 278 (358)
T COG2933 211 PGMWAVDLGACPGGWTYQLVKRN--MRVYAVDNGP-MAQSLM--------DTGQVTHLREDGFKFRP-TRSNIDWMVCDM 278 (358)
T ss_pred CCceeeecccCCCccchhhhhcc--eEEEEeccch-hhhhhh--------cccceeeeeccCccccc-CCCCCceEEeeh
Confidence 67788999999999999999987 8899999443 333221 22235555555 33333 346688888765
Q ss_pred c
Q 029554 170 G 170 (191)
Q Consensus 170 ~ 170 (191)
+
T Consensus 279 V 279 (358)
T COG2933 279 V 279 (358)
T ss_pred h
Confidence 5
No 314
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=83.64 E-value=6.6 Score=27.25 Aligned_cols=79 Identities=20% Similarity=0.175 Sum_probs=50.9
Q ss_pred CCeEEEEcCCcc-HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC-CCCcceEEeCC
Q 029554 92 FPTALCLGGSLE-AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK-ESSLDLAISCL 169 (191)
Q Consensus 92 ~~~VLDlGcG~G-~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~-~~~fDlVis~~ 169 (191)
.++|+|+|-|-= ..+..|++++ ..++++|+++. .+ ...+.+...|+..-... -...|+|.|
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g--~dv~atDI~~~---~a----------~~g~~~v~DDitnP~~~iY~~A~lIYS-- 76 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERG--FDVLATDINEK---TA----------PEGLRFVVDDITNPNISIYEGADLIYS-- 76 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcC--CcEEEEecccc---cC----------cccceEEEccCCCccHHHhhCccceee--
Confidence 448999998865 4466778877 88999999986 11 12367777776532211 124678876
Q ss_pred cccCcCChHHHHHHHHhcc
Q 029554 170 GLHWTNDLPGAMIQVSIFL 188 (191)
Q Consensus 170 ~l~~~~d~~~~l~~i~r~L 188 (191)
+.--+++...+-.+.+.+
T Consensus 77 -iRpppEl~~~ildva~aV 94 (129)
T COG1255 77 -IRPPPELQSAILDVAKAV 94 (129)
T ss_pred -cCCCHHHHHHHHHHHHhh
Confidence 444556666666666554
No 315
>PRK08339 short chain dehydrogenase; Provisional
Probab=83.44 E-value=10 Score=29.64 Aligned_cols=78 Identities=18% Similarity=0.231 Sum_probs=48.6
Q ss_pred CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC---------CC
Q 029554 91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP---------LK 158 (191)
Q Consensus 91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~---------~~ 158 (191)
.+.++|-.|++.| .+...|.+.+ .+|+.++.++.-++...+.... ....++.++..|+.... ..
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~Dv~~~~~i~~~~~~~~~ 82 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAG--ADVILLSRNEENLKKAREKIKS--ESNVDVSYIVADLTKREDLERTVKELKN 82 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh--hcCCceEEEEecCCCHHHHHHHHHHHHh
Confidence 3456788887655 3344556666 7899999988766665554432 11234667777765421 01
Q ss_pred CCCcceEEeCCccc
Q 029554 159 ESSLDLAISCLGLH 172 (191)
Q Consensus 159 ~~~fDlVis~~~l~ 172 (191)
-+..|+++.+.+..
T Consensus 83 ~g~iD~lv~nag~~ 96 (263)
T PRK08339 83 IGEPDIFFFSTGGP 96 (263)
T ss_pred hCCCcEEEECCCCC
Confidence 25689999887653
No 316
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=83.42 E-value=0.97 Score=37.35 Aligned_cols=90 Identities=12% Similarity=-0.022 Sum_probs=58.8
Q ss_pred ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHH-------HhhhhccCCCCceeeEecCCCCCCC-CCC
Q 029554 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCK-------DAQQDAHNDNIETCFVVGDEEFLPL-KES 160 (191)
Q Consensus 89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~-------~~~~~~~~~~~~~~~~~~d~~~l~~-~~~ 160 (191)
-.++.-|+|==.|||.+....+..| +.|+|.||+-.|+...+ .++++-+....-+.+...|...-|. ..-
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~FG--a~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~ 283 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHFG--AYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNL 283 (421)
T ss_pred cCCCCEEecCccccCceeeehhhhc--ceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcc
Confidence 4578899999999999988888877 89999999999886321 2222111112235556667654432 345
Q ss_pred CcceEEeCCcccCcCChHHHHHHHHhcc
Q 029554 161 SLDLAISCLGLHWTNDLPGAMIQVSIFL 188 (191)
Q Consensus 161 ~fDlVis~~~l~~~~d~~~~l~~i~r~L 188 (191)
.||.||| ||+--+++-.+.+
T Consensus 284 ~fDaIvc--------DPPYGVRe~~rk~ 303 (421)
T KOG2671|consen 284 KFDAIVC--------DPPYGVREGARKT 303 (421)
T ss_pred eeeEEEe--------CCCcchhhhhhhh
Confidence 7999998 5555555544443
No 317
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=83.22 E-value=16 Score=27.05 Aligned_cols=84 Identities=14% Similarity=0.076 Sum_probs=45.8
Q ss_pred CCC-eEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCC-CCceeeEecCCCCC---------CCCC
Q 029554 91 TFP-TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHND-NIETCFVVGDEEFL---------PLKE 159 (191)
Q Consensus 91 ~~~-~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~-~~~~~~~~~d~~~l---------~~~~ 159 (191)
++. .|+.+|||.-.....+....+...++-+|.-+ +++.-++.+...... ..+.+++..|+... .+..
T Consensus 77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~-v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~ 155 (183)
T PF04072_consen 77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPE-VIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDP 155 (183)
T ss_dssp TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HH-HHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-T
T ss_pred CCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHH-HHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCC
Confidence 444 79999999988877777654345666666533 444444444331000 12356688887742 1334
Q ss_pred CCcceEEeCCcccCcC
Q 029554 160 SSLDLAISCLGLHWTN 175 (191)
Q Consensus 160 ~~fDlVis~~~l~~~~ 175 (191)
+.--++++-.++.|+.
T Consensus 156 ~~ptl~i~Egvl~Yl~ 171 (183)
T PF04072_consen 156 DRPTLFIAEGVLMYLS 171 (183)
T ss_dssp TSEEEEEEESSGGGS-
T ss_pred CCCeEEEEcchhhcCC
Confidence 4556778888899984
No 318
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=83.12 E-value=1.3 Score=37.49 Aligned_cols=52 Identities=13% Similarity=0.002 Sum_probs=44.0
Q ss_pred HHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhh
Q 029554 84 RLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD 137 (191)
Q Consensus 84 ~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~ 137 (191)
++.....++..|-|+-||-|.+...+...+ +.|++.|.++++++..+.....
T Consensus 242 rlsg~fk~gevv~D~FaGvGPfa~Pa~kK~--crV~aNDLNpesik~Lk~ni~l 293 (495)
T KOG2078|consen 242 RLSGLFKPGEVVCDVFAGVGPFALPAAKKG--CRVYANDLNPESIKWLKANIKL 293 (495)
T ss_pred HHhhccCCcchhhhhhcCcCccccchhhcC--cEEEecCCCHHHHHHHHHhccc
Confidence 333345688899999999999999998877 9999999999999999887653
No 319
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=82.66 E-value=3.5 Score=31.42 Aligned_cols=91 Identities=12% Similarity=0.073 Sum_probs=54.4
Q ss_pred CCCeEEEEcCCccHHHHHHhh----cCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-------CCC
Q 029554 91 TFPTALCLGGSLEAVRRLLRG----RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-------LKE 159 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~----~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-------~~~ 159 (191)
.+..|+|+|.--|..+...+. .|...+|+++|++-.-++.+... ...+.|+.++-.... .+.
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-------~p~i~f~egss~dpai~eqi~~~~~ 141 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-------VPDILFIEGSSTDPAIAEQIRRLKN 141 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-------CCCeEEEeCCCCCHHHHHHHHHHhc
Confidence 456799999988877766654 35567899999998766555332 334788887643321 222
Q ss_pred CCcceEEeCCcccCcCChHHHHHHHHhcc
Q 029554 160 SSLDLAISCLGLHWTNDLPGAMIQVSIFL 188 (191)
Q Consensus 160 ~~fDlVis~~~l~~~~d~~~~l~~i~r~L 188 (191)
+.--+.+|-.+-|+.+..-+.|+-...+|
T Consensus 142 ~y~kIfvilDsdHs~~hvLAel~~~~pll 170 (237)
T COG3510 142 EYPKIFVILDSDHSMEHVLAELKLLAPLL 170 (237)
T ss_pred CCCcEEEEecCCchHHHHHHHHHHhhhHh
Confidence 22234445555665544444444444444
No 320
>PRK05867 short chain dehydrogenase; Provisional
Probab=82.31 E-value=12 Score=28.80 Aligned_cols=78 Identities=19% Similarity=0.134 Sum_probs=49.0
Q ss_pred CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----
Q 029554 91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L----- 157 (191)
Q Consensus 91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~----- 157 (191)
.+.++|-.|++.| .+...|.+.+ .+|+.++.++.-++...+.... ...++.++..|+.... +
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAG--AQVAIAARHLDALEKLADEIGT---SGGKVVPVCCDVSQHQQVTSMLDQVTA 82 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHHHHh---cCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 3567888887655 3344555656 7899999988766665554432 2234666777765321 0
Q ss_pred CCCCcceEEeCCcccC
Q 029554 158 KESSLDLAISCLGLHW 173 (191)
Q Consensus 158 ~~~~fDlVis~~~l~~ 173 (191)
.-+..|.+|.+.+...
T Consensus 83 ~~g~id~lv~~ag~~~ 98 (253)
T PRK05867 83 ELGGIDIAVCNAGIIT 98 (253)
T ss_pred HhCCCCEEEECCCCCC
Confidence 1157899999877654
No 321
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=82.20 E-value=1.9 Score=38.29 Aligned_cols=37 Identities=8% Similarity=-0.129 Sum_probs=30.0
Q ss_pred ccCCCeEEEEcCCccHHHHHHhhcCC-CceEEEEECCh
Q 029554 89 RKTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSY 125 (191)
Q Consensus 89 ~~~~~~VLDlGcG~G~~~~~l~~~~~-~~~v~~vD~s~ 125 (191)
..+...|||+||.+|.|.+...+..| ..-|+|+|+-|
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 34677899999999999998877654 36799999876
No 322
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=82.18 E-value=6.2 Score=31.44 Aligned_cols=81 Identities=16% Similarity=0.031 Sum_probs=45.1
Q ss_pred eEEEEcCCc--cHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcc
Q 029554 94 TALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGL 171 (191)
Q Consensus 94 ~VLDlGcG~--G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l 171 (191)
+|.=||+|. |.++..|.+.+ .+|+++|.++..++.+.+.. . +.....+.+. -...|+|+...-.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g--~~V~~~d~~~~~~~~a~~~g-----~---~~~~~~~~~~----~~~aDlVilavp~ 67 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLG--HTVYGVSRRESTCERAIERG-----L---VDEASTDLSL----LKDCDLVILALPI 67 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHCC-----C---cccccCCHhH----hcCCCEEEEcCCH
Confidence 355677763 45556666655 68999999998877765431 0 1111111111 1357888876543
Q ss_pred cCcCChHHHHHHHHhccCCC
Q 029554 172 HWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 172 ~~~~d~~~~l~~i~r~Lkpg 191 (191)
..+ ..++.++...++|+
T Consensus 68 ~~~---~~~~~~l~~~l~~~ 84 (279)
T PRK07417 68 GLL---LPPSEQLIPALPPE 84 (279)
T ss_pred HHH---HHHHHHHHHhCCCC
Confidence 322 34556666656553
No 323
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.57 E-value=5.1 Score=33.46 Aligned_cols=36 Identities=11% Similarity=0.142 Sum_probs=27.4
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEE---EECChh
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIM---MDTSYD 126 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~---vD~s~~ 126 (191)
+....+|+|||-|.++.++....+...++- +|-...
T Consensus 182 ~~~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s~ 220 (420)
T KOG2811|consen 182 PSSCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKSS 220 (420)
T ss_pred CcceEEEecCCchHHHHHHHHHhccccEEEEEeecccch
Confidence 445789999999999999987766666665 665443
No 324
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=81.41 E-value=6.3 Score=32.88 Aligned_cols=48 Identities=10% Similarity=-0.073 Sum_probs=37.0
Q ss_pred ccCCCeEEEEcCCccHHHHHHhhcCCC----ceEEEEECChhHHHHHHHhhh
Q 029554 89 RKTFPTALCLGGSLEAVRRLLRGRGGI----EKLIMMDTSYDMLKLCKDAQQ 136 (191)
Q Consensus 89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~----~~v~~vD~s~~~l~~a~~~~~ 136 (191)
.+|+.+|||+++.+|.=+..|.+.... ..|++-|.++.-+........
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~ 204 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLK 204 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHh
Confidence 568899999999999888777665422 289999999987777666553
No 325
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=81.32 E-value=1.2 Score=34.46 Aligned_cols=56 Identities=13% Similarity=-0.050 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhh
Q 029554 78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ 135 (191)
Q Consensus 78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~ 135 (191)
.+..++.+. +.++...+|.--|.|..+..+.+..+...++++|-+|-....+....
T Consensus 32 ~devl~~ls--pv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s 87 (303)
T KOG2782|consen 32 LDEVLDILS--PVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHS 87 (303)
T ss_pred hhhHHHHcC--CCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhh
Confidence 445555555 55788899999999999999988888888999999998777765443
No 326
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=80.49 E-value=27 Score=27.88 Aligned_cols=81 Identities=23% Similarity=0.252 Sum_probs=59.3
Q ss_pred CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--------CC-
Q 029554 91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--------LK- 158 (191)
Q Consensus 91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--------~~- 158 (191)
...++|=-|+-.| .++..|++++ .+++.+--+++-++..++..+. .....+.++..|+.... ..
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g--~~liLvaR~~~kL~~la~~l~~--~~~v~v~vi~~DLs~~~~~~~l~~~l~~ 80 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRG--YNLILVARREDKLEALAKELED--KTGVEVEVIPADLSDPEALERLEDELKE 80 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCcHHHHHHHHHHHHH--hhCceEEEEECcCCChhHHHHHHHHHHh
Confidence 4557888887666 4456677777 8999999999988888887764 23456788888876542 11
Q ss_pred -CCCcceEEeCCcccCcC
Q 029554 159 -ESSLDLAISCLGLHWTN 175 (191)
Q Consensus 159 -~~~fDlVis~~~l~~~~ 175 (191)
...+|+.|.|.++-+..
T Consensus 81 ~~~~IdvLVNNAG~g~~g 98 (265)
T COG0300 81 RGGPIDVLVNNAGFGTFG 98 (265)
T ss_pred cCCcccEEEECCCcCCcc
Confidence 24799999999887654
No 327
>PRK05854 short chain dehydrogenase; Provisional
Probab=80.45 E-value=15 Score=29.65 Aligned_cols=78 Identities=18% Similarity=0.121 Sum_probs=48.2
Q ss_pred CCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------CC
Q 029554 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------LK 158 (191)
Q Consensus 92 ~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~~ 158 (191)
+.++|=.|++.| .....|++.+ .+|+.++-++.-.+.+.+..... ....++.++..|+.... -.
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~G--~~Vil~~R~~~~~~~~~~~l~~~-~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAAG--AEVILPVRNRAKGEAAVAAIRTA-VPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHHh-CCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 457787787655 2344455556 78999998877655554444321 12235777888876532 11
Q ss_pred CCCcceEEeCCccc
Q 029554 159 ESSLDLAISCLGLH 172 (191)
Q Consensus 159 ~~~fDlVis~~~l~ 172 (191)
.+..|++|.|.+..
T Consensus 91 ~~~iD~li~nAG~~ 104 (313)
T PRK05854 91 GRPIHLLINNAGVM 104 (313)
T ss_pred CCCccEEEECCccc
Confidence 25689999987654
No 328
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=80.44 E-value=33 Score=28.76 Aligned_cols=96 Identities=15% Similarity=0.054 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcccCCCeEEEEcCCccHHH----HHHhhcC---CCceEEEEEC----ChhHHHHHHHhhhhcc-CCCCce
Q 029554 78 AENLLDRLEDCRKTFPTALCLGGSLEAVR----RLLRGRG---GIEKLIMMDT----SYDMLKLCKDAQQDAH-NDNIET 145 (191)
Q Consensus 78 ~~~l~~~l~~~~~~~~~VLDlGcG~G~~~----~~l~~~~---~~~~v~~vD~----s~~~l~~a~~~~~~~~-~~~~~~ 145 (191)
...+++.+. ....-.|+|+|.|.|.-. +.|+.+. |.-++|+++. +..-++...++..+.. ..+...
T Consensus 99 NqaIleA~~--g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~f 176 (374)
T PF03514_consen 99 NQAILEAFE--GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPF 176 (374)
T ss_pred hHHHHHHhc--cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccE
Confidence 345555555 334557999999999443 3444431 4568999999 6777777766654311 123344
Q ss_pred eeEec---CCCCC-----CCCCCCcceEEeCCcccCcC
Q 029554 146 CFVVG---DEEFL-----PLKESSLDLAISCLGLHWTN 175 (191)
Q Consensus 146 ~~~~~---d~~~l-----~~~~~~fDlVis~~~l~~~~ 175 (191)
+|... ..+.+ ...++..=+|-|.+.|||+.
T Consensus 177 ef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~ 214 (374)
T PF03514_consen 177 EFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLL 214 (374)
T ss_pred EEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhc
Confidence 44442 23332 23334443444566788875
No 329
>PRK06194 hypothetical protein; Provisional
Probab=80.36 E-value=25 Score=27.56 Aligned_cols=76 Identities=17% Similarity=0.108 Sum_probs=45.9
Q ss_pred CCeEEEEcCCccHHHH----HHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----
Q 029554 92 FPTALCLGGSLEAVRR----LLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L----- 157 (191)
Q Consensus 92 ~~~VLDlGcG~G~~~~----~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~----- 157 (191)
+.+||=.|++ |.++. .|.+.+ .+|+.+|.++..++...+.... ...++.++.+|+.... +
T Consensus 6 ~k~vlVtGas-ggIG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~d~~~~~~~~~~~~~ 79 (287)
T PRK06194 6 GKVAVITGAA-SGFGLAFARIGAALG--MKLVLADVQQDALDRAVAELRA---QGAEVLGVRTDVSDAAQVEALADAALE 79 (287)
T ss_pred CCEEEEeCCc-cHHHHHHHHHHHHCC--CEEEEEeCChHHHHHHHHHHHh---cCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 3568877754 43333 445555 7899999887766555444322 2334677778865421 0
Q ss_pred CCCCcceEEeCCcccC
Q 029554 158 KESSLDLAISCLGLHW 173 (191)
Q Consensus 158 ~~~~fDlVis~~~l~~ 173 (191)
..+..|+|+.+.+...
T Consensus 80 ~~g~id~vi~~Ag~~~ 95 (287)
T PRK06194 80 RFGAVHLLFNNAGVGA 95 (287)
T ss_pred HcCCCCEEEECCCCCC
Confidence 1145899999887643
No 330
>PRK07904 short chain dehydrogenase; Provisional
Probab=79.42 E-value=16 Score=28.39 Aligned_cols=77 Identities=17% Similarity=0.153 Sum_probs=45.1
Q ss_pred CCCeEEEEcCCccHHHHHH----hhcCCCceEEEEECChhH-HHHHHHhhhhccCCCCceeeEecCCCCCC---------
Q 029554 91 TFPTALCLGGSLEAVRRLL----RGRGGIEKLIMMDTSYDM-LKLCKDAQQDAHNDNIETCFVVGDEEFLP--------- 156 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l----~~~~~~~~v~~vD~s~~~-l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--------- 156 (191)
.+.+||-.|++.| ++..+ .+.+ ..+|+.++-++.- ++...+.... ....++.++..|+....
T Consensus 7 ~~~~vlItGas~g-iG~~la~~l~~~g-g~~V~~~~r~~~~~~~~~~~~l~~--~~~~~v~~~~~D~~~~~~~~~~~~~~ 82 (253)
T PRK07904 7 NPQTILLLGGTSE-IGLAICERYLKNA-PARVVLAALPDDPRRDAAVAQMKA--AGASSVEVIDFDALDTDSHPKVIDAA 82 (253)
T ss_pred CCcEEEEEcCCcH-HHHHHHHHHHhcC-CCeEEEEeCCcchhHHHHHHHHHh--cCCCceEEEEecCCChHHHHHHHHHH
Confidence 4557888887544 44433 3332 2689999887763 5554444432 12235777778765321
Q ss_pred CCCCCcceEEeCCcc
Q 029554 157 LKESSLDLAISCLGL 171 (191)
Q Consensus 157 ~~~~~fDlVis~~~l 171 (191)
...+..|+++.+.+.
T Consensus 83 ~~~g~id~li~~ag~ 97 (253)
T PRK07904 83 FAGGDVDVAIVAFGL 97 (253)
T ss_pred HhcCCCCEEEEeeec
Confidence 112579998887655
No 331
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.29 E-value=16 Score=28.51 Aligned_cols=76 Identities=13% Similarity=-0.096 Sum_probs=46.5
Q ss_pred CCCeEEEEcCCccHHHHHHhhcC--CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-----------CCC
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-----------LPL 157 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~--~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-----------l~~ 157 (191)
....||-.||..|.++..|+..+ ....|+++--+-+-......++. +.....|+.. ..+
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~g--------l~~~kLDV~~~~~V~~v~~evr~~ 77 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFG--------LKPYKLDVSKPEEVVTVSGEVRAN 77 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhhC--------CeeEEeccCChHHHHHHHHHHhhC
Confidence 45679999999998887776542 12788888755543333322221 2223333221 125
Q ss_pred CCCCcceEEeCCcccCc
Q 029554 158 KESSLDLAISCLGLHWT 174 (191)
Q Consensus 158 ~~~~fDlVis~~~l~~~ 174 (191)
++|+.|+.+.|.+....
T Consensus 78 ~~Gkld~L~NNAG~~C~ 94 (289)
T KOG1209|consen 78 PDGKLDLLYNNAGQSCT 94 (289)
T ss_pred CCCceEEEEcCCCCCcc
Confidence 78999999999876654
No 332
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.17 E-value=6.5 Score=32.06 Aligned_cols=66 Identities=11% Similarity=0.082 Sum_probs=45.4
Q ss_pred EEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC-CCCcceEEeCC
Q 029554 95 ALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK-ESSLDLAISCL 169 (191)
Q Consensus 95 VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~-~~~fDlVis~~ 169 (191)
|+|+=||-|.+..-+...+ ..-+.++|+++...+..+.++.. .+...|+..+... -..+|+++...
T Consensus 1 vidLF~G~GG~~~Gl~~aG-~~~~~a~e~~~~a~~ty~~N~~~--------~~~~~Di~~~~~~~~~~~dvl~gg~ 67 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG-FKCVFASEIDKYAQKTYEANFGN--------KVPFGDITKISPSDIPDFDILLGGF 67 (315)
T ss_pred CEEEecCccHHHHHHHHcC-CeEEEEEeCCHHHHHHHHHhCCC--------CCCccChhhhhhhhCCCcCEEEecC
Confidence 5899999999999888766 45567899999888877765521 3344665554311 12479888654
No 333
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=78.95 E-value=21 Score=27.34 Aligned_cols=43 Identities=28% Similarity=0.281 Sum_probs=30.8
Q ss_pred cCCCeEEEEcCCc-cHHHHHHhhcCCCceEEEEECChhHHHHHHH
Q 029554 90 KTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (191)
Q Consensus 90 ~~~~~VLDlGcG~-G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~ 133 (191)
.++.+||-+|+|. |.....++... ..++++++.++...+.+++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH
Confidence 4677999999985 55555555443 2789999999877766644
No 334
>PRK05876 short chain dehydrogenase; Provisional
Probab=78.93 E-value=17 Score=28.69 Aligned_cols=77 Identities=17% Similarity=0.162 Sum_probs=46.7
Q ss_pred CCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------CC
Q 029554 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------LK 158 (191)
Q Consensus 92 ~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~~ 158 (191)
+.++|=.|++.| .+...|.+.+ .+|+.+|.++.-++...+.... ...++.++..|+.... -.
T Consensus 6 ~k~vlVTGas~gIG~ala~~La~~G--~~Vv~~~r~~~~l~~~~~~l~~---~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (275)
T PRK05876 6 GRGAVITGGASGIGLATGTEFARRG--ARVVLGDVDKPGLRQAVNHLRA---EGFDVHGVMCDVRHREEVTHLADEAFRL 80 (275)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh---cCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 456787776544 2334445555 7899999888766655444432 2234667777765421 01
Q ss_pred CCCcceEEeCCcccC
Q 029554 159 ESSLDLAISCLGLHW 173 (191)
Q Consensus 159 ~~~fDlVis~~~l~~ 173 (191)
-+..|+||.+.++.+
T Consensus 81 ~g~id~li~nAg~~~ 95 (275)
T PRK05876 81 LGHVDVVFSNAGIVV 95 (275)
T ss_pred cCCCCEEEECCCcCC
Confidence 246899999887643
No 335
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=78.92 E-value=13 Score=30.05 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=29.6
Q ss_pred CCCeEEEEcCCc-cHHHHHHhhcCCCceEEEEECChhHHHHHHH
Q 029554 91 TFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (191)
Q Consensus 91 ~~~~VLDlGcG~-G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~ 133 (191)
++.+||-.|||. |..+..+++......+++++.++...+.+++
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~ 208 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA 208 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 677888888764 5555555554333379999999888876644
No 336
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=78.72 E-value=4.9 Score=27.09 Aligned_cols=61 Identities=10% Similarity=0.063 Sum_probs=37.6
Q ss_pred CCccHHHHHHhhcC--CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----CCCCCcceEEeCC
Q 029554 100 GSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----LKESSLDLAISCL 169 (191)
Q Consensus 100 cG~G~~~~~l~~~~--~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----~~~~~fDlVis~~ 169 (191)
||.|..+..+.+.. ....|+.+|.++..++.+++.. ..++.+|..... ..-..+|.|++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~---------~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG---------VEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT---------SEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc---------cccccccchhhhHHhhcCccccCEEEEcc
Confidence 45566666554321 1258999999999888876543 567888866421 2224678887653
No 337
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=78.68 E-value=8.2 Score=31.65 Aligned_cols=73 Identities=15% Similarity=0.112 Sum_probs=51.1
Q ss_pred CeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC---CCCCCcceEEeCC
Q 029554 93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP---LKESSLDLAISCL 169 (191)
Q Consensus 93 ~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~---~~~~~fDlVis~~ 169 (191)
.+++|+=||-|.+..-+...+ ..-+.++|+++..++.-+.++.. ..+...|+.... +....+|+|+...
T Consensus 4 ~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n~~~-------~~~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKANFPH-------GDIILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred ceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHHhCCC-------CceeechHhhcChhhccccCCCEEEeCC
Confidence 468999999999988887766 57799999999988888776642 344555544332 1111789999765
Q ss_pred cccC
Q 029554 170 GLHW 173 (191)
Q Consensus 170 ~l~~ 173 (191)
-.+.
T Consensus 76 PCQ~ 79 (328)
T COG0270 76 PCQD 79 (328)
T ss_pred CCcc
Confidence 4443
No 338
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.62 E-value=12 Score=28.49 Aligned_cols=74 Identities=18% Similarity=0.143 Sum_probs=43.8
Q ss_pred CCeEEEEcCCccHHHH----HHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--------C--
Q 029554 92 FPTALCLGGSLEAVRR----LLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--------L-- 157 (191)
Q Consensus 92 ~~~VLDlGcG~G~~~~----~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--------~-- 157 (191)
+.++|-.|++.| ++. .+.+.+ .+|+.+|.++.-++.+.+.... ...++.++..|+.... .
T Consensus 5 ~~~~lItG~~g~-iG~~~a~~l~~~G--~~vi~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (253)
T PRK08217 5 DKVIVITGGAQG-LGRAMAEYLAQKG--AKLALIDLNQEKLEEAVAECGA---LGTEVRGYAANVTDEEDVEATFAQIAE 78 (253)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh---cCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 457888886433 333 344445 6899999988665555444432 2334666777754321 0
Q ss_pred CCCCcceEEeCCcc
Q 029554 158 KESSLDLAISCLGL 171 (191)
Q Consensus 158 ~~~~fDlVis~~~l 171 (191)
.-+.+|.||.+.+.
T Consensus 79 ~~~~id~vi~~ag~ 92 (253)
T PRK08217 79 DFGQLNGLINNAGI 92 (253)
T ss_pred HcCCCCEEEECCCc
Confidence 01468999988763
No 339
>PRK06172 short chain dehydrogenase; Provisional
Probab=78.58 E-value=16 Score=28.07 Aligned_cols=75 Identities=21% Similarity=0.175 Sum_probs=46.0
Q ss_pred CCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----C
Q 029554 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----K 158 (191)
Q Consensus 92 ~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----~ 158 (191)
+.+||-.|++.| .+...|.+.+ .+|+.++-++.-++...+.... ...++.++..|+.... + .
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G--~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 81 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREG--AKVVVADRDAAGGEETVALIRE---AGGEALFVACDVTRDAEVKALVEQTIAA 81 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHh---cCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 457888886544 2333445555 7899999988765555444432 2334677778765421 0 1
Q ss_pred CCCcceEEeCCcc
Q 029554 159 ESSLDLAISCLGL 171 (191)
Q Consensus 159 ~~~fDlVis~~~l 171 (191)
-+.+|.||.+.+.
T Consensus 82 ~g~id~li~~ag~ 94 (253)
T PRK06172 82 YGRLDYAFNNAGI 94 (253)
T ss_pred hCCCCEEEECCCC
Confidence 1468999988764
No 340
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=78.41 E-value=3.2 Score=34.16 Aligned_cols=51 Identities=14% Similarity=0.186 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhcccCCCeEEEEcCCcc----HHHHHHhhcCCCceEEEEECChhHHHH
Q 029554 76 AVAENLLDRLEDCRKTFPTALCLGGSLE----AVRRLLRGRGGIEKLIMMDTSYDMLKL 130 (191)
Q Consensus 76 ~~~~~l~~~l~~~~~~~~~VLDlGcG~G----~~~~~l~~~~~~~~v~~vD~s~~~l~~ 130 (191)
.++.+++..+. ....++-.|.||| ..++++.+.++..+|+++|+....+..
T Consensus 200 ttg~EI~~q~~----g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~ 254 (362)
T KOG1252|consen 200 TTGPEIWRQLD----GKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLS 254 (362)
T ss_pred cccHHHHHHhc----CCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceecc
Confidence 34555555443 2335788888988 568888888999999999998876543
No 341
>PRK08267 short chain dehydrogenase; Provisional
Probab=78.21 E-value=15 Score=28.44 Aligned_cols=72 Identities=15% Similarity=0.048 Sum_probs=45.0
Q ss_pred eEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----CC------C
Q 029554 94 TALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK------E 159 (191)
Q Consensus 94 ~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~~------~ 159 (191)
+||-.|++.| .+...|.+.+ .+|+.++.++..++...+... ..++.++.+|+.+.. +. .
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 75 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEG--WRVGAYDINEAGLAALAAELG-----AGNAWTGALDVTDRAAWDAALADFAAATG 75 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHhc-----CCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 5777776543 2334455556 789999988876665544321 234677778866421 00 3
Q ss_pred CCcceEEeCCccc
Q 029554 160 SSLDLAISCLGLH 172 (191)
Q Consensus 160 ~~fDlVis~~~l~ 172 (191)
+.+|.|+.+.+..
T Consensus 76 ~~id~vi~~ag~~ 88 (260)
T PRK08267 76 GRLDVLFNNAGIL 88 (260)
T ss_pred CCCCEEEECCCCC
Confidence 5789999887654
No 342
>PRK06125 short chain dehydrogenase; Provisional
Probab=78.14 E-value=19 Score=27.84 Aligned_cols=77 Identities=14% Similarity=0.132 Sum_probs=45.9
Q ss_pred CCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-CCCCc
Q 029554 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-KESSL 162 (191)
Q Consensus 92 ~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-~~~~f 162 (191)
+.+||=.|++.| .+...|.+.+ .+|++++.++..++...+.... ....++.++..|+.... + .-+..
T Consensus 7 ~k~vlItG~~~giG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~~D~~~~~~~~~~~~~~g~i 82 (259)
T PRK06125 7 GKRVLITGASKGIGAAAAEAFAAEG--CHLHLVARDADALEALAADLRA--AHGVDVAVHALDLSSPEAREQLAAEAGDI 82 (259)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHh--hcCCceEEEEecCCCHHHHHHHHHHhCCC
Confidence 467888886444 2233345555 7899999988766655544432 11234666777765321 0 12578
Q ss_pred ceEEeCCccc
Q 029554 163 DLAISCLGLH 172 (191)
Q Consensus 163 DlVis~~~l~ 172 (191)
|.+|.+.+..
T Consensus 83 d~lv~~ag~~ 92 (259)
T PRK06125 83 DILVNNAGAI 92 (259)
T ss_pred CEEEECCCCC
Confidence 9999887653
No 343
>PRK07890 short chain dehydrogenase; Provisional
Probab=78.12 E-value=14 Score=28.43 Aligned_cols=75 Identities=9% Similarity=-0.035 Sum_probs=45.5
Q ss_pred CCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----C
Q 029554 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----K 158 (191)
Q Consensus 92 ~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----~ 158 (191)
+.+||=.|++.| .+...|.+.+ .+|++++.++.-++...+.... ...++.++..|+.... + .
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAG--ADVVLAARTAERLDEVAAEIDD---LGRRALAVPTDITDEDQCANLVALALER 79 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHH---hCCceEEEecCCCCHHHHHHHHHHHHHH
Confidence 456887776444 2233455556 7999999988766555444432 2234677777765321 0 1
Q ss_pred CCCcceEEeCCcc
Q 029554 159 ESSLDLAISCLGL 171 (191)
Q Consensus 159 ~~~fDlVis~~~l 171 (191)
-+..|.|+.+.+.
T Consensus 80 ~g~~d~vi~~ag~ 92 (258)
T PRK07890 80 FGRVDALVNNAFR 92 (258)
T ss_pred cCCccEEEECCcc
Confidence 1468999988765
No 344
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=77.68 E-value=11 Score=30.51 Aligned_cols=86 Identities=16% Similarity=0.189 Sum_probs=54.7
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC-CCC-CCCCCcceEEeC
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE-FLP-LKESSLDLAISC 168 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~-~l~-~~~~~fDlVis~ 168 (191)
.+..|+-+| -.-..+..++-.+-..++..+|+++..+..-.+-..+ ....++..+..|+. .+| --...||+++.
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee--~g~~~ie~~~~Dlr~plpe~~~~kFDvfiT- 227 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEE--LGYNNIEAFVFDLRNPLPEDLKRKFDVFIT- 227 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHH--hCccchhheeehhcccChHHHHhhCCeeec-
Confidence 355799998 3333344444334448899999999999888766654 23344777777765 344 11257998875
Q ss_pred CcccCcCChHHHHHHHHhc
Q 029554 169 LGLHWTNDLPGAMIQVSIF 187 (191)
Q Consensus 169 ~~l~~~~d~~~~l~~i~r~ 187 (191)
||+.++..+.-.
T Consensus 228 -------DPpeTi~alk~F 239 (354)
T COG1568 228 -------DPPETIKALKLF 239 (354)
T ss_pred -------CchhhHHHHHHH
Confidence 666666655443
No 345
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=77.60 E-value=20 Score=27.87 Aligned_cols=77 Identities=18% Similarity=0.170 Sum_probs=48.1
Q ss_pred CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554 91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L 157 (191)
Q Consensus 91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~ 157 (191)
.+.++|-.|++.| .+...|.+.+ .+|+.++.++.-++...+.... ...++.++..|+.... -
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G--~~vv~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 83 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAG--ATIVFNDINQELVDKGLAAYRE---LGIEAHGYVCDVTDEDGVQAMVSQIEK 83 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHHHh---cCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 3457888887654 3344555656 7899999888766655544432 2334677778765321 0
Q ss_pred CCCCcceEEeCCccc
Q 029554 158 KESSLDLAISCLGLH 172 (191)
Q Consensus 158 ~~~~fDlVis~~~l~ 172 (191)
.-+..|.||.+.+..
T Consensus 84 ~~~~id~li~~ag~~ 98 (265)
T PRK07097 84 EVGVIDILVNNAGII 98 (265)
T ss_pred hCCCCCEEEECCCCC
Confidence 115689999988754
No 346
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=77.09 E-value=10 Score=30.89 Aligned_cols=46 Identities=9% Similarity=-0.015 Sum_probs=37.0
Q ss_pred ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhh
Q 029554 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQ 136 (191)
Q Consensus 89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~ 136 (191)
...+.+|+-+|+|.......|...- .++.+||+++..++..+-+..
T Consensus 61 ~g~ghrivtigSGGcn~L~ylsr~P--a~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 61 LGIGHRIVTIGSGGCNMLAYLSRAP--ARIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred cCCCcEEEEecCCcchHHHHhhcCC--ceeEEEeCCHHHHHHHHHHHH
Confidence 3467789999999988888887754 899999999998877665543
No 347
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=76.81 E-value=21 Score=27.49 Aligned_cols=76 Identities=16% Similarity=0.128 Sum_probs=46.3
Q ss_pred CCCeEEEEcCCccHHHH----HHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------
Q 029554 91 TFPTALCLGGSLEAVRR----LLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP---------- 156 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~----~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~---------- 156 (191)
.+.+||-.|++. .++. .+.+.+ .+|+.++-+++.++...+.... ...++.++..|+....
T Consensus 10 ~~k~ilItGas~-~IG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~ 83 (256)
T PRK06124 10 AGQVALVTGSAR-GLGFEIARALAGAG--AHVLVNGRNAATLEAAVAALRA---AGGAAEALAFDIADEEAVAAAFARID 83 (256)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHHh---cCCceEEEEccCCCHHHHHHHHHHHH
Confidence 456788888644 3444 344455 7899999988766555444432 2234667777765321
Q ss_pred CCCCCcceEEeCCccc
Q 029554 157 LKESSLDLAISCLGLH 172 (191)
Q Consensus 157 ~~~~~fDlVis~~~l~ 172 (191)
-.-+.+|.||.+.+..
T Consensus 84 ~~~~~id~vi~~ag~~ 99 (256)
T PRK06124 84 AEHGRLDILVNNVGAR 99 (256)
T ss_pred HhcCCCCEEEECCCCC
Confidence 0124689999887653
No 348
>PRK07478 short chain dehydrogenase; Provisional
Probab=76.72 E-value=21 Score=27.42 Aligned_cols=76 Identities=20% Similarity=0.188 Sum_probs=46.9
Q ss_pred CCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----C
Q 029554 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----K 158 (191)
Q Consensus 92 ~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----~ 158 (191)
+.++|=.|++.| .+...|.+.+ .+|+.++-++.-++...+.... ...++.++..|+.... + .
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G--~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREG--AKVVVGARRQAELDQLVAEIRA---EGGEAVALAGDVRDEAYAKALVALAVER 80 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 456787776544 2344555556 7899999888766665554432 2234667777765421 0 1
Q ss_pred CCCcceEEeCCccc
Q 029554 159 ESSLDLAISCLGLH 172 (191)
Q Consensus 159 ~~~fDlVis~~~l~ 172 (191)
-+..|.+|.+.+..
T Consensus 81 ~~~id~li~~ag~~ 94 (254)
T PRK07478 81 FGGLDIAFNNAGTL 94 (254)
T ss_pred cCCCCEEEECCCCC
Confidence 24689999887753
No 349
>PRK07063 short chain dehydrogenase; Provisional
Probab=76.39 E-value=28 Score=26.89 Aligned_cols=79 Identities=16% Similarity=0.162 Sum_probs=48.6
Q ss_pred CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----
Q 029554 91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L----- 157 (191)
Q Consensus 91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~----- 157 (191)
.+.+||-.|++.| .+...|.+.+ .+|+.++.++..++...+..... ....++.++..|+.... +
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G--~~vv~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREG--AAVALADLDAALAERAAAAIARD-VAGARVLAVPADVTDAASVAAAVAAAEE 82 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhc-cCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 3457888887544 2344455556 78999999887766665554320 12335677777865421 0
Q ss_pred CCCCcceEEeCCccc
Q 029554 158 KESSLDLAISCLGLH 172 (191)
Q Consensus 158 ~~~~fDlVis~~~l~ 172 (191)
.-+..|.+|.+.+..
T Consensus 83 ~~g~id~li~~ag~~ 97 (260)
T PRK07063 83 AFGPLDVLVNNAGIN 97 (260)
T ss_pred HhCCCcEEEECCCcC
Confidence 114689999987754
No 350
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=76.37 E-value=10 Score=30.44 Aligned_cols=85 Identities=15% Similarity=0.071 Sum_probs=49.5
Q ss_pred CeEEEEcCC--ccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEe-cCCCCCCCCCCCcceEEeCC
Q 029554 93 PTALCLGGS--LEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVV-GDEEFLPLKESSLDLAISCL 169 (191)
Q Consensus 93 ~~VLDlGcG--~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~-~d~~~l~~~~~~fDlVis~~ 169 (191)
.+|+=+|.| .|.++..+...+....+++.|.+...++.+.+.. +.... .+.... .....|+||.+-
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lg---------v~d~~~~~~~~~--~~~~aD~Vivav 72 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELG---------VIDELTVAGLAE--AAAEADLVIVAV 72 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcC---------cccccccchhhh--hcccCCEEEEec
Confidence 356666665 4566667777776677899999888777664321 11111 111111 224579998654
Q ss_pred cccCcCChHHHHHHHHhccCCC
Q 029554 170 GLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 170 ~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
-+. -...+++++...|+||
T Consensus 73 Pi~---~~~~~l~~l~~~l~~g 91 (279)
T COG0287 73 PIE---ATEEVLKELAPHLKKG 91 (279)
T ss_pred cHH---HHHHHHHHhcccCCCC
Confidence 333 3356777777666665
No 351
>PRK07035 short chain dehydrogenase; Provisional
Probab=76.34 E-value=21 Score=27.33 Aligned_cols=75 Identities=19% Similarity=0.181 Sum_probs=45.2
Q ss_pred CCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----C
Q 029554 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----K 158 (191)
Q Consensus 92 ~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----~ 158 (191)
..+||=.|++.| .+...|.+.+ .+|++++.++.-++...+.... ...+..++..|+.... + .
T Consensus 8 ~k~vlItGas~gIG~~l~~~l~~~G--~~Vi~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (252)
T PRK07035 8 GKIALVTGASRGIGEAIAKLLAQQG--AHVIVSSRKLDGCQAVADAIVA---AGGKAEALACHIGEMEQIDALFAHIRER 82 (252)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh---cCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 456888887655 3344455555 7899999987666555444432 2233556667765321 0 0
Q ss_pred CCCcceEEeCCcc
Q 029554 159 ESSLDLAISCLGL 171 (191)
Q Consensus 159 ~~~fDlVis~~~l 171 (191)
-+++|+||.+.+.
T Consensus 83 ~~~id~li~~ag~ 95 (252)
T PRK07035 83 HGRLDILVNNAAA 95 (252)
T ss_pred cCCCCEEEECCCc
Confidence 1468999987764
No 352
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=76.05 E-value=31 Score=30.07 Aligned_cols=79 Identities=9% Similarity=0.020 Sum_probs=45.9
Q ss_pred CCCeEEEEcCCccHHHHHHhhc---C-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CCC-CCCCcce
Q 029554 91 TFPTALCLGGSLEAVRRLLRGR---G-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LPL-KESSLDL 164 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~---~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~~-~~~~fDl 164 (191)
+...|.|..||+|.+....... + ....++|.+....+...++....-............+|... ..+ ....||.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 4468999999999887643321 1 12569999999999988886532100111122223334221 111 2345888
Q ss_pred EEeCC
Q 029554 165 AISCL 169 (191)
Q Consensus 165 Vis~~ 169 (191)
|++|-
T Consensus 297 v~~Np 301 (501)
T TIGR00497 297 VVSNP 301 (501)
T ss_pred EeecC
Confidence 88764
No 353
>PRK08703 short chain dehydrogenase; Provisional
Probab=75.87 E-value=23 Score=26.90 Aligned_cols=76 Identities=21% Similarity=0.215 Sum_probs=42.3
Q ss_pred CCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC---C--------
Q 029554 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP---L-------- 157 (191)
Q Consensus 92 ~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~---~-------- 157 (191)
+.+||-.||+.| .+...|.+.+ .+|++++-++.-.+...+.... .......++..|+.... +
T Consensus 6 ~k~vlItG~sggiG~~la~~l~~~g--~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~i~ 81 (239)
T PRK08703 6 DKTILVTGASQGLGEQVAKAYAAAG--ATVILVARHQKKLEKVYDAIVE--AGHPEPFAIRFDLMSAEEKEFEQFAATIA 81 (239)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcC--CEEEEEeCChHHHHHHHHHHHH--cCCCCcceEEeeecccchHHHHHHHHHHH
Confidence 457888886443 2233444555 7899999988765555444322 11223444555543210 0
Q ss_pred --CCCCcceEEeCCcc
Q 029554 158 --KESSLDLAISCLGL 171 (191)
Q Consensus 158 --~~~~fDlVis~~~l 171 (191)
-.+..|.|+.+.+.
T Consensus 82 ~~~~~~id~vi~~ag~ 97 (239)
T PRK08703 82 EATQGKLDGIVHCAGY 97 (239)
T ss_pred HHhCCCCCEEEEeccc
Confidence 01468999987764
No 354
>PRK07102 short chain dehydrogenase; Provisional
Probab=75.80 E-value=21 Score=27.27 Aligned_cols=72 Identities=15% Similarity=0.190 Sum_probs=42.2
Q ss_pred eEEEEcCCccHHHHH----HhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C--CCCCc
Q 029554 94 TALCLGGSLEAVRRL----LRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L--KESSL 162 (191)
Q Consensus 94 ~VLDlGcG~G~~~~~----l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~--~~~~f 162 (191)
+||-.|+. |.++.. |.+.+ .+|++++.++.-.+...+.... ....++.++..|+.... . ....+
T Consensus 3 ~vlItGas-~giG~~~a~~l~~~G--~~Vi~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 77 (243)
T PRK07102 3 KILIIGAT-SDIARACARRYAAAG--ARLYLAARDVERLERLADDLRA--RGAVAVSTHELDILDTASHAAFLDSLPALP 77 (243)
T ss_pred EEEEEcCC-cHHHHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHH--hcCCeEEEEecCCCChHHHHHHHHHHhhcC
Confidence 57777754 444443 44455 7899999988655443333221 12345778888866432 0 01247
Q ss_pred ceEEeCCc
Q 029554 163 DLAISCLG 170 (191)
Q Consensus 163 DlVis~~~ 170 (191)
|+|+.+.+
T Consensus 78 d~vv~~ag 85 (243)
T PRK07102 78 DIVLIAVG 85 (243)
T ss_pred CEEEECCc
Confidence 99998754
No 355
>PRK07062 short chain dehydrogenase; Provisional
Probab=75.56 E-value=32 Score=26.63 Aligned_cols=79 Identities=15% Similarity=0.079 Sum_probs=47.7
Q ss_pred CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554 91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L 157 (191)
Q Consensus 91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~ 157 (191)
.+..+|-.|++.| .+...|.+.+ .+|+.++.++.-++.+.+..... ....++.++..|+.... -
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 83 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAG--ASVAICGRDEERLASAEARLREK-FPGARLLAARCDVLDEADVAAFAAAVEA 83 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHHHhh-CCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 3457888887654 3344445555 78999999887666655444320 11234666777765421 0
Q ss_pred CCCCcceEEeCCccc
Q 029554 158 KESSLDLAISCLGLH 172 (191)
Q Consensus 158 ~~~~fDlVis~~~l~ 172 (191)
.-+..|.+|.+.+..
T Consensus 84 ~~g~id~li~~Ag~~ 98 (265)
T PRK07062 84 RFGGVDMLVNNAGQG 98 (265)
T ss_pred hcCCCCEEEECCCCC
Confidence 125689999987754
No 356
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=75.30 E-value=10 Score=30.40 Aligned_cols=42 Identities=7% Similarity=0.215 Sum_probs=30.8
Q ss_pred CeEEEEcCCc--cHHHHHHhhcCCCceEEEEECChhHHHHHHHhhh
Q 029554 93 PTALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQ 136 (191)
Q Consensus 93 ~~VLDlGcG~--G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~ 136 (191)
.+|-=||+|+ +.++..++..+ .+|+..|.+++.++.+.+++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G--~~V~l~d~~~~~~~~~~~~i~ 49 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAG--VDVLVFETTEELATAGRNRIE 49 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHH
Confidence 4677888873 34455556666 899999999999988766543
No 357
>PRK07024 short chain dehydrogenase; Provisional
Probab=75.00 E-value=25 Score=27.18 Aligned_cols=74 Identities=16% Similarity=0.143 Sum_probs=44.5
Q ss_pred CeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------CCC
Q 029554 93 PTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------LKE 159 (191)
Q Consensus 93 ~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~~~ 159 (191)
.+||=.|+..| .+...|.+.+ .+|+.++.+++.++...+.... .. ++.++..|+.... -..
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~~~~~---~~-~~~~~~~Dl~~~~~i~~~~~~~~~~~ 76 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQG--ATLGLVARRTDALQAFAARLPK---AA-RVSVYAADVRDADALAAAAADFIAAH 76 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHhccc---CC-eeEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 45777776443 2233444555 7899999988766555443321 11 5777888876421 012
Q ss_pred CCcceEEeCCccc
Q 029554 160 SSLDLAISCLGLH 172 (191)
Q Consensus 160 ~~fDlVis~~~l~ 172 (191)
+..|+||.+.+..
T Consensus 77 g~id~lv~~ag~~ 89 (257)
T PRK07024 77 GLPDVVIANAGIS 89 (257)
T ss_pred CCCCEEEECCCcC
Confidence 4589999987653
No 358
>PRK05866 short chain dehydrogenase; Provisional
Probab=74.82 E-value=27 Score=27.90 Aligned_cols=77 Identities=19% Similarity=0.172 Sum_probs=46.7
Q ss_pred CCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----C
Q 029554 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----K 158 (191)
Q Consensus 92 ~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----~ 158 (191)
+.+||=.|++.| .+...|++.+ .+|+.++-+++.++...+.... ....+.++..|+.... + .
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G--~~Vi~~~R~~~~l~~~~~~l~~---~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 114 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRG--ATVVAVARREDLLDAVADRITR---AGGDAMAVPCDLSDLDAVDALVADVEKR 114 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 356888886544 2233444555 7899999998766665544432 2234566777765421 0 1
Q ss_pred CCCcceEEeCCcccC
Q 029554 159 ESSLDLAISCLGLHW 173 (191)
Q Consensus 159 ~~~fDlVis~~~l~~ 173 (191)
-+..|+||.+.+...
T Consensus 115 ~g~id~li~~AG~~~ 129 (293)
T PRK05866 115 IGGVDILINNAGRSI 129 (293)
T ss_pred cCCCCEEEECCCCCC
Confidence 246899999876543
No 359
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=74.58 E-value=12 Score=26.36 Aligned_cols=79 Identities=19% Similarity=0.189 Sum_probs=41.4
Q ss_pred CCCeEEEEcCCccHH-HHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCC-CCCcceEEeC
Q 029554 91 TFPTALCLGGSLEAV-RRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK-ESSLDLAISC 168 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~-~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~-~~~fDlVis~ 168 (191)
...+|+|+|-|.=.. +..|.+.+ ..|+++|+.+. .+. ..+.++..|+-.-.+. =...|+|.|
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G--~dV~~tDi~~~---~a~----------~g~~~v~DDif~P~l~iY~~a~lIYS- 76 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERG--FDVIATDINPR---KAP----------EGVNFVVDDIFNPNLEIYEGADLIYS- 76 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS---EEEEE-SS-S-----------------STTEE---SSS--HHHHTTEEEEEE-
T ss_pred CCCcEEEECcCCCHHHHHHHHHcC--CcEEEEECccc---ccc----------cCcceeeecccCCCHHHhcCCcEEEE-
Confidence 455999999997654 55667777 89999999987 111 2266777775432110 125788887
Q ss_pred CcccCcCChHHHHHHHHhc
Q 029554 169 LGLHWTNDLPGAMIQVSIF 187 (191)
Q Consensus 169 ~~l~~~~d~~~~l~~i~r~ 187 (191)
+.--.+++..+.++++.
T Consensus 77 --iRPP~El~~~il~lA~~ 93 (127)
T PF03686_consen 77 --IRPPPELQPPILELAKK 93 (127)
T ss_dssp --ES--TTSHHHHHHHHHH
T ss_pred --eCCChHHhHHHHHHHHH
Confidence 34345666666666654
No 360
>PRK06139 short chain dehydrogenase; Provisional
Probab=74.56 E-value=21 Score=29.25 Aligned_cols=77 Identities=16% Similarity=0.155 Sum_probs=47.6
Q ss_pred CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554 91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L 157 (191)
Q Consensus 91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~ 157 (191)
.+.+||=.|++.| .+...|.+.+ .+|+.++-++.-++...+.... ...++.++..|+.... -
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G--~~Vvl~~R~~~~l~~~~~~~~~---~g~~~~~~~~Dv~d~~~v~~~~~~~~~ 80 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRG--ARLVLAARDEEALQAVAEECRA---LGAEVLVVPTDVTDADQVKALATQAAS 80 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 3457888887544 2334455566 7899999998877666555432 2234566667765321 0
Q ss_pred CCCCcceEEeCCccc
Q 029554 158 KESSLDLAISCLGLH 172 (191)
Q Consensus 158 ~~~~fDlVis~~~l~ 172 (191)
..+.+|++|.|.+..
T Consensus 81 ~~g~iD~lVnnAG~~ 95 (330)
T PRK06139 81 FGGRIDVWVNNVGVG 95 (330)
T ss_pred hcCCCCEEEECCCcC
Confidence 125789999987754
No 361
>PRK07814 short chain dehydrogenase; Provisional
Probab=74.49 E-value=19 Score=28.00 Aligned_cols=75 Identities=12% Similarity=0.146 Sum_probs=45.4
Q ss_pred CCCeEEEEcCCccHHHH----HHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----CC---
Q 029554 91 TFPTALCLGGSLEAVRR----LLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK--- 158 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~----~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~~--- 158 (191)
.+.+||=.|++ |.++. .|.+.+ .+|++++.++.-++...+.... ...++.++..|+.... +.
T Consensus 9 ~~~~vlItGas-ggIG~~~a~~l~~~G--~~Vi~~~r~~~~~~~~~~~l~~---~~~~~~~~~~D~~~~~~~~~~~~~~~ 82 (263)
T PRK07814 9 DDQVAVVTGAG-RGLGAAIALAFAEAG--ADVLIAARTESQLDEVAEQIRA---AGRRAHVVAADLAHPEATAGLAGQAV 82 (263)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 35678888854 44444 445555 7999999988766555444422 2234666777765432 00
Q ss_pred --CCCcceEEeCCcc
Q 029554 159 --ESSLDLAISCLGL 171 (191)
Q Consensus 159 --~~~fDlVis~~~l 171 (191)
-+.+|+|+.+.+.
T Consensus 83 ~~~~~id~vi~~Ag~ 97 (263)
T PRK07814 83 EAFGRLDIVVNNVGG 97 (263)
T ss_pred HHcCCCCEEEECCCC
Confidence 1468999987654
No 362
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=74.31 E-value=31 Score=26.49 Aligned_cols=76 Identities=18% Similarity=0.157 Sum_probs=46.5
Q ss_pred CCeEEEEcCCccHHHH----HHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----
Q 029554 92 FPTALCLGGSLEAVRR----LLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L----- 157 (191)
Q Consensus 92 ~~~VLDlGcG~G~~~~----~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~----- 157 (191)
+.+||=.|+ +|.++. .|.+.+ .+|++++.++...+...+.... ...++.++..|+.... +
T Consensus 7 ~~~vlItGa-sg~iG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 80 (262)
T PRK13394 7 GKTAVVTGA-ASGIGKEIALELARAG--AAVAIADLNQDGANAVADEINK---AGGKAIGVAMDVTNEDAVNAGIDKVAE 80 (262)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHHHHHh---cCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 456776665 444444 444555 6899999998766666555432 2334667778866422 0
Q ss_pred CCCCcceEEeCCcccC
Q 029554 158 KESSLDLAISCLGLHW 173 (191)
Q Consensus 158 ~~~~fDlVis~~~l~~ 173 (191)
..++.|.||.+.+..+
T Consensus 81 ~~~~~d~vi~~ag~~~ 96 (262)
T PRK13394 81 RFGSVDILVSNAGIQI 96 (262)
T ss_pred HcCCCCEEEECCccCC
Confidence 1145899998876643
No 363
>PRK06196 oxidoreductase; Provisional
Probab=74.22 E-value=25 Score=28.29 Aligned_cols=72 Identities=19% Similarity=0.154 Sum_probs=44.0
Q ss_pred CCCeEEEEcCCccHHHH----HHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------
Q 029554 91 TFPTALCLGGSLEAVRR----LLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP---------- 156 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~----~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~---------- 156 (191)
.+.+||=.|++. .++. .|.+.+ .+|++++-++...+...+... .+.++..|+....
T Consensus 25 ~~k~vlITGasg-gIG~~~a~~L~~~G--~~Vv~~~R~~~~~~~~~~~l~-------~v~~~~~Dl~d~~~v~~~~~~~~ 94 (315)
T PRK06196 25 SGKTAIVTGGYS-GLGLETTRALAQAG--AHVIVPARRPDVAREALAGID-------GVEVVMLDLADLESVRAFAERFL 94 (315)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhh-------hCeEEEccCCCHHHHHHHHHHHH
Confidence 345788888654 3444 444455 789999988765554433321 2566777766432
Q ss_pred CCCCCcceEEeCCccc
Q 029554 157 LKESSLDLAISCLGLH 172 (191)
Q Consensus 157 ~~~~~fDlVis~~~l~ 172 (191)
-..+..|+||.+.+..
T Consensus 95 ~~~~~iD~li~nAg~~ 110 (315)
T PRK06196 95 DSGRRIDILINNAGVM 110 (315)
T ss_pred hcCCCCCEEEECCCCC
Confidence 0125689999987653
No 364
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=74.00 E-value=12 Score=27.59 Aligned_cols=80 Identities=19% Similarity=0.109 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC-
Q 029554 75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE- 153 (191)
Q Consensus 75 ~~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~- 153 (191)
+..+..+.+.+........+|+.|||-+-+....- ...+..+++.+|++...-... .+ .|+.-|..
T Consensus 9 ~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF~~~~-----------~~-~F~fyD~~~ 75 (162)
T PF10237_consen 9 DETAEFLARELLDGALDDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRFEQFG-----------GD-EFVFYDYNE 75 (162)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchHHhcC-----------Cc-ceEECCCCC
Confidence 34455555555543346679999999775554333 133457899999998654311 11 34444433
Q ss_pred --CCC--CCCCCcceEEeC
Q 029554 154 --FLP--LKESSLDLAISC 168 (191)
Q Consensus 154 --~l~--~~~~~fDlVis~ 168 (191)
.+| + .++||+||+-
T Consensus 76 p~~~~~~l-~~~~d~vv~D 93 (162)
T PF10237_consen 76 PEELPEEL-KGKFDVVVID 93 (162)
T ss_pred hhhhhhhc-CCCceEEEEC
Confidence 232 3 4789999984
No 365
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=73.93 E-value=2.4 Score=36.49 Aligned_cols=46 Identities=13% Similarity=0.036 Sum_probs=40.7
Q ss_pred CCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhh
Q 029554 91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQ 136 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~ 136 (191)
....+|-+|-|.|.+...+....|..+++++++.+.|++.+.+.+.
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~ 340 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFG 340 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhc
Confidence 4557899999999999999888888999999999999999988763
No 366
>PRK05872 short chain dehydrogenase; Provisional
Probab=73.86 E-value=25 Score=28.04 Aligned_cols=76 Identities=20% Similarity=0.215 Sum_probs=45.4
Q ss_pred CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554 91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L 157 (191)
Q Consensus 91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~ 157 (191)
.+.+||-.|++.| .+...|.+.+ .+|+.++.++..++...+... ....+..+..|+.... -
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~l~~~~~~l~----~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 81 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARG--AKLALVDLEEAELAALAAELG----GDDRVLTVVADVTDLAAMQAAAEEAVE 81 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhc----CCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 3567888886554 2344445555 789999998876665544432 1223444456654321 0
Q ss_pred CCCCcceEEeCCccc
Q 029554 158 KESSLDLAISCLGLH 172 (191)
Q Consensus 158 ~~~~fDlVis~~~l~ 172 (191)
.-+..|+||.|.+..
T Consensus 82 ~~g~id~vI~nAG~~ 96 (296)
T PRK05872 82 RFGGIDVVVANAGIA 96 (296)
T ss_pred HcCCCCEEEECCCcC
Confidence 115789999998764
No 367
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=73.80 E-value=40 Score=26.29 Aligned_cols=76 Identities=18% Similarity=0.098 Sum_probs=45.1
Q ss_pred CCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----C
Q 029554 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----K 158 (191)
Q Consensus 92 ~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----~ 158 (191)
+.++|-.|++.| .+...|.+.+ .+|+.++.++...+...+.... ...++.++..|+.... + .
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 84 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAG--AKVAILDRNQEKAEAVVAEIKA---AGGEALAVKADVLDKESLEQARQQILED 84 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh---cCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 456777776544 2233444555 7899999887665554444322 2234667777765421 0 0
Q ss_pred CCCcceEEeCCccc
Q 029554 159 ESSLDLAISCLGLH 172 (191)
Q Consensus 159 ~~~fDlVis~~~l~ 172 (191)
-+.+|++|.+.+..
T Consensus 85 ~g~id~li~~ag~~ 98 (278)
T PRK08277 85 FGPCDILINGAGGN 98 (278)
T ss_pred cCCCCEEEECCCCC
Confidence 14789999887643
No 368
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=73.56 E-value=21 Score=27.67 Aligned_cols=72 Identities=17% Similarity=0.098 Sum_probs=44.7
Q ss_pred eEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------CCCC
Q 029554 94 TALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------LKES 160 (191)
Q Consensus 94 ~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~~~~ 160 (191)
+||=.|++.| .+...|.+.+ .+|+.++.++..++...+.... ..++.++..|+.... -.-+
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~----~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g 75 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKG--ARVVISSRNEENLEKALKELKE----YGEVYAVKADLSDKDDLKNLVKEAWELLG 75 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHh----cCCceEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 4677776654 2344455556 7899999988776666554432 124666777765321 0125
Q ss_pred CcceEEeCCcc
Q 029554 161 SLDLAISCLGL 171 (191)
Q Consensus 161 ~fDlVis~~~l 171 (191)
..|++|.+.+.
T Consensus 76 ~id~li~naG~ 86 (259)
T PRK08340 76 GIDALVWNAGN 86 (259)
T ss_pred CCCEEEECCCC
Confidence 68999988765
No 369
>PRK09291 short chain dehydrogenase; Provisional
Probab=73.55 E-value=26 Score=26.85 Aligned_cols=74 Identities=15% Similarity=0.055 Sum_probs=42.7
Q ss_pred CeEEEEcCCccH---HHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----CCCCCcceE
Q 029554 93 PTALCLGGSLEA---VRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----LKESSLDLA 165 (191)
Q Consensus 93 ~~VLDlGcG~G~---~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----~~~~~fDlV 165 (191)
.+||-.|++.|. +...|.+.+ .+|++++-++.-.+...+.... ...++.++.+|+.... ...+..|.|
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G--~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~id~v 77 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKG--HNVIAGVQIAPQVTALRAEAAR---RGLALRVEKLDLTDAIDRAQAAEWDVDVL 77 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh---cCCcceEEEeeCCCHHHHHHHhcCCCCEE
Confidence 357878874432 233344555 7899998877655444433322 2234667777765421 112468999
Q ss_pred EeCCcc
Q 029554 166 ISCLGL 171 (191)
Q Consensus 166 is~~~l 171 (191)
+.+.+.
T Consensus 78 i~~ag~ 83 (257)
T PRK09291 78 LNNAGI 83 (257)
T ss_pred EECCCc
Confidence 988664
No 370
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=73.36 E-value=28 Score=26.83 Aligned_cols=76 Identities=14% Similarity=0.067 Sum_probs=46.0
Q ss_pred CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554 91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L 157 (191)
Q Consensus 91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~ 157 (191)
.+.+||-.|++.| .+...|.+.+ .+++.++.+...++...+.... ...++.++..|+.... -
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G--~~vv~~~r~~~~~~~~~~~l~~---~~~~~~~~~~D~~~~~~i~~~~~~~~~ 84 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAG--ASVVVSDINADAANHVVDEIQQ---LGGQAFACRCDITSEQELSALADFALS 84 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 3567899996554 2233445555 7899999887766655444322 2234666677765322 0
Q ss_pred CCCCcceEEeCCcc
Q 029554 158 KESSLDLAISCLGL 171 (191)
Q Consensus 158 ~~~~fDlVis~~~l 171 (191)
.-+.+|.|+.+.+.
T Consensus 85 ~~~~~d~li~~ag~ 98 (255)
T PRK06113 85 KLGKVDILVNNAGG 98 (255)
T ss_pred HcCCCCEEEECCCC
Confidence 11468999988764
No 371
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=73.35 E-value=30 Score=27.94 Aligned_cols=90 Identities=13% Similarity=0.017 Sum_probs=48.9
Q ss_pred eEEEEcCC--ccHHHHHHhhcCCCceEEEEECChhHHHHHHHh--hhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554 94 TALCLGGS--LEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDA--QQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL 169 (191)
Q Consensus 94 ~VLDlGcG--~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~--~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~ 169 (191)
+|+=+|+| .|.++..|.+.+ ..|+.++-++..++..++. ..- ........+. .... .+-+.+.||+|+..-
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~G--~~V~lv~r~~~~~~~i~~~~Gl~i-~~~g~~~~~~-~~~~-~~~~~~~~D~viv~v 78 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARAG--LPVRLILRDRQRLAAYQQAGGLTL-VEQGQASLYA-IPAE-TADAAEPIHRLLLAC 78 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhCC--CCeEEEEechHHHHHHhhcCCeEE-eeCCcceeec-cCCC-CcccccccCEEEEEC
Confidence 58888887 455677777766 7899999887666555432 110 0000001111 1111 111235799987642
Q ss_pred cccCcCChHHHHHHHHhccCCC
Q 029554 170 GLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 170 ~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
=-+ +...++..+..++.|+
T Consensus 79 K~~---~~~~al~~l~~~l~~~ 97 (305)
T PRK05708 79 KAY---DAEPAVASLAHRLAPG 97 (305)
T ss_pred CHH---hHHHHHHHHHhhCCCC
Confidence 222 4567777787777653
No 372
>PRK07454 short chain dehydrogenase; Provisional
Probab=73.15 E-value=34 Score=25.98 Aligned_cols=76 Identities=17% Similarity=0.199 Sum_probs=46.4
Q ss_pred CCeEEEEcCCccHHHHHH----hhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----CC----
Q 029554 92 FPTALCLGGSLEAVRRLL----RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK---- 158 (191)
Q Consensus 92 ~~~VLDlGcG~G~~~~~l----~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~~---- 158 (191)
..++|-.|+ +|.++..+ .+.+ .+|++++-++.-.+...+.... ...++.++.+|+.... +.
T Consensus 6 ~k~vlItG~-sg~iG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (241)
T PRK07454 6 MPRALITGA-SSGIGKATALAFAKAG--WDLALVARSQDALEALAAELRS---TGVKAAAYSIDLSNPEAIAPGIAELLE 79 (241)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh---CCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 456788885 45444444 4445 6899999988655554443322 2335777788876432 11
Q ss_pred -CCCcceEEeCCcccC
Q 029554 159 -ESSLDLAISCLGLHW 173 (191)
Q Consensus 159 -~~~fDlVis~~~l~~ 173 (191)
-+..|.||.+.+...
T Consensus 80 ~~~~id~lv~~ag~~~ 95 (241)
T PRK07454 80 QFGCPDVLINNAGMAY 95 (241)
T ss_pred HcCCCCEEEECCCccC
Confidence 145899998877543
No 373
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=73.04 E-value=11 Score=26.87 Aligned_cols=76 Identities=22% Similarity=0.209 Sum_probs=47.7
Q ss_pred eEEEEcCCcc---HHHHHHhhcCCCceEEEEECC--hhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------CC
Q 029554 94 TALCLGGSLE---AVRRLLRGRGGIEKLIMMDTS--YDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------LK 158 (191)
Q Consensus 94 ~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s--~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~~ 158 (191)
+||=.|++.| .++..|.+.+ ...++.+.-+ ....+...+.... ...++.++..|+.... ..
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g-~~~v~~~~r~~~~~~~~~l~~~l~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRG-ARVVILTSRSEDSEGAQELIQELKA---PGAKITFIECDLSDPESIRALIEEVIKR 77 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-TEEEEEEESSCHHHHHHHHHHHHHH---TTSEEEEEESETTSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcC-ceEEEEeeecccccccccccccccc---cccccccccccccccccccccccccccc
Confidence 4677787655 3344555553 3688888888 4555555444432 3366888888866431 12
Q ss_pred CCCcceEEeCCcccC
Q 029554 159 ESSLDLAISCLGLHW 173 (191)
Q Consensus 159 ~~~fDlVis~~~l~~ 173 (191)
.+..|++|.+.+...
T Consensus 78 ~~~ld~li~~ag~~~ 92 (167)
T PF00106_consen 78 FGPLDILINNAGIFS 92 (167)
T ss_dssp HSSESEEEEECSCTT
T ss_pred ccccccccccccccc
Confidence 367999999877655
No 374
>PRK08589 short chain dehydrogenase; Validated
Probab=72.95 E-value=27 Score=27.29 Aligned_cols=75 Identities=15% Similarity=0.077 Sum_probs=44.1
Q ss_pred CCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------CC
Q 029554 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------LK 158 (191)
Q Consensus 92 ~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~~ 158 (191)
+.++|=.|++.| .+...|.+.+ .+|++++.+ ..++...+.... ...++.++..|+.... -.
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G--~~vi~~~r~-~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEG--AYVLAVDIA-EAVSETVDKIKS---NGGKAKAYHVDISDEQQVKDFASEIKEQ 79 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCc-HHHHHHHHHHHh---cCCeEEEEEeecCCHHHHHHHHHHHHHH
Confidence 457888887554 2344455556 899999988 434333333322 2234666777765321 01
Q ss_pred CCCcceEEeCCccc
Q 029554 159 ESSLDLAISCLGLH 172 (191)
Q Consensus 159 ~~~fDlVis~~~l~ 172 (191)
-+..|++|.+.+..
T Consensus 80 ~g~id~li~~Ag~~ 93 (272)
T PRK08589 80 FGRVDVLFNNAGVD 93 (272)
T ss_pred cCCcCEEEECCCCC
Confidence 24689999987654
No 375
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=72.23 E-value=6 Score=31.24 Aligned_cols=71 Identities=15% Similarity=0.149 Sum_probs=41.7
Q ss_pred HHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcccCcCChHHHHHHHH
Q 029554 106 RRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQVS 185 (191)
Q Consensus 106 ~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l~~~~d~~~~l~~i~ 185 (191)
+..|.+.++..+|+++|.++..++.+.+.. . +.-...+.+.+ ..+|+||.+.-+. ....++.++.
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g-----~---~~~~~~~~~~~----~~~DlvvlavP~~---~~~~~l~~~~ 66 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALELG-----I---IDEASTDIEAV----EDADLVVLAVPVS---AIEDVLEEIA 66 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHTT-----S---SSEEESHHHHG----GCCSEEEE-S-HH---HHHHHHHHHH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHCC-----C---eeeccCCHhHh----cCCCEEEEcCCHH---HHHHHHHHhh
Confidence 456777777889999999999988885532 1 11111111112 2369998765443 3466777777
Q ss_pred hccCCC
Q 029554 186 IFLLPD 191 (191)
Q Consensus 186 r~Lkpg 191 (191)
..+++|
T Consensus 67 ~~~~~~ 72 (258)
T PF02153_consen 67 PYLKPG 72 (258)
T ss_dssp CGS-TT
T ss_pred hhcCCC
Confidence 777664
No 376
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=72.20 E-value=35 Score=26.21 Aligned_cols=76 Identities=14% Similarity=0.144 Sum_probs=45.1
Q ss_pred CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554 91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L 157 (191)
Q Consensus 91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~ 157 (191)
.+.++|=.|++.| .+...|.+.+ .+|+.++.++..+....+.... ...++.++..|+.... -
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G--~~vvl~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYG--AEIIINDITAERAELAVAKLRQ---EGIKAHAAPFNVTHKQEVEAAIEHIEK 82 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHHHHh---cCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 3456888886544 2333444555 7899999887665555444332 2234556667765321 0
Q ss_pred CCCCcceEEeCCcc
Q 029554 158 KESSLDLAISCLGL 171 (191)
Q Consensus 158 ~~~~fDlVis~~~l 171 (191)
..+.+|.|+.+.+.
T Consensus 83 ~~~~id~vi~~ag~ 96 (254)
T PRK08085 83 DIGPIDVLINNAGI 96 (254)
T ss_pred hcCCCCEEEECCCc
Confidence 12568999998765
No 377
>PRK07109 short chain dehydrogenase; Provisional
Probab=72.06 E-value=38 Score=27.68 Aligned_cols=76 Identities=17% Similarity=0.132 Sum_probs=46.6
Q ss_pred CCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------CC
Q 029554 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------LK 158 (191)
Q Consensus 92 ~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~~ 158 (191)
..+||=.|++.| .+...|.+.+ .+|+.++-++.-++...+.... ...++.++..|+.... -.
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G--~~Vvl~~R~~~~l~~~~~~l~~---~g~~~~~v~~Dv~d~~~v~~~~~~~~~~ 82 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRG--AKVVLLARGEEGLEALAAEIRA---AGGEALAVVADVADAEAVQAAADRAEEE 82 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHH---cCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 456788886544 2233445556 7899999988766665554432 2334667777765321 01
Q ss_pred CCCcceEEeCCccc
Q 029554 159 ESSLDLAISCLGLH 172 (191)
Q Consensus 159 ~~~fDlVis~~~l~ 172 (191)
-+.+|++|.+.+..
T Consensus 83 ~g~iD~lInnAg~~ 96 (334)
T PRK07109 83 LGPIDTWVNNAMVT 96 (334)
T ss_pred CCCCCEEEECCCcC
Confidence 24789999887653
No 378
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=71.89 E-value=15 Score=30.35 Aligned_cols=74 Identities=14% Similarity=0.029 Sum_probs=47.0
Q ss_pred EEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEec--------CCCCCCCCCCCcceEE
Q 029554 95 ALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVG--------DEEFLPLKESSLDLAI 166 (191)
Q Consensus 95 VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~--------d~~~l~~~~~~fDlVi 166 (191)
-+|||.|..-+-..+..+......+++|+....+..+.+...+. +....+.++.. |.... -++..||.+.
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn-~lss~ikvV~~~~~ktll~d~~~~-~~e~~ydFcM 183 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQN-NLSSLIKVVKVEPQKTLLMDALKE-ESEIIYDFCM 183 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchhhcccccc-ccccceeeEEecchhhcchhhhcc-CccceeeEEe
Confidence 48999988877666655433478999999999999988877652 22223333332 11111 1244599998
Q ss_pred eCCc
Q 029554 167 SCLG 170 (191)
Q Consensus 167 s~~~ 170 (191)
||--
T Consensus 184 cNPP 187 (419)
T KOG2912|consen 184 CNPP 187 (419)
T ss_pred cCCc
Confidence 8744
No 379
>PRK10458 DNA cytosine methylase; Provisional
Probab=71.67 E-value=56 Score=28.38 Aligned_cols=43 Identities=12% Similarity=0.033 Sum_probs=34.5
Q ss_pred CCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhh
Q 029554 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ 135 (191)
Q Consensus 92 ~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~ 135 (191)
.-+++|+=||-|.+..-+...+ ...|.++|+++...+.-+.++
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG-~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIG-GQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcC-CEEEEEEechHHHHHHHHHHc
Confidence 3489999999999999887765 466889999998777766654
No 380
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=71.32 E-value=23 Score=28.56 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=27.4
Q ss_pred CeEEEEcCCc--cHHHHHHhhcCCCceEEEEECChhHHHHHHH
Q 029554 93 PTALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (191)
Q Consensus 93 ~~VLDlGcG~--G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~ 133 (191)
.+|.=||+|. +.++..|...+...+|+++|.++..++.+++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~ 49 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE 49 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh
Confidence 4688888875 2344455554433489999999987766643
No 381
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=71.22 E-value=26 Score=31.12 Aligned_cols=83 Identities=16% Similarity=0.146 Sum_probs=58.4
Q ss_pred CCCeEEEEcCCccHHHHHHhhc---CCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----CCCCCc
Q 029554 91 TFPTALCLGGSLEAVRRLLRGR---GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LKESSL 162 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~~~---~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~~~~~f 162 (191)
.+.+||--| |+|.++..+.+. +...+++.+|.++..+-.-.+.+... ....+..+..+|+.+.. +.+-+.
T Consensus 249 ~gK~vLVTG-agGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~-~~~~~~~~~igdVrD~~~~~~~~~~~kv 326 (588)
T COG1086 249 TGKTVLVTG-GGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREK-FPELKLRFYIGDVRDRDRVERAMEGHKV 326 (588)
T ss_pred CCCEEEEeC-CCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhh-CCCcceEEEecccccHHHHHHHHhcCCC
Confidence 345677666 566666666543 34588999999998777776666431 12467888889877542 445579
Q ss_pred ceEEeCCcccCcC
Q 029554 163 DLAISCLGLHWTN 175 (191)
Q Consensus 163 DlVis~~~l~~~~ 175 (191)
|.|+-..++.|++
T Consensus 327 d~VfHAAA~KHVP 339 (588)
T COG1086 327 DIVFHAAALKHVP 339 (588)
T ss_pred ceEEEhhhhccCc
Confidence 9999999999986
No 382
>PRK08265 short chain dehydrogenase; Provisional
Probab=71.02 E-value=25 Score=27.31 Aligned_cols=72 Identities=18% Similarity=0.174 Sum_probs=43.1
Q ss_pred CCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----C
Q 029554 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----K 158 (191)
Q Consensus 92 ~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----~ 158 (191)
+.++|-.|++.| .+...|.+.+ .+|+.+|.++.-++...+.. ..++.++..|+.... + .
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAG--ARVAIVDIDADNGAAVAASL------GERARFIATDITDDAAIERAVATVVAR 77 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHh------CCeeEEEEecCCCHHHHHHHHHHHHHH
Confidence 457888886443 2334445556 78999998876544433322 224667777765431 0 1
Q ss_pred CCCcceEEeCCcc
Q 029554 159 ESSLDLAISCLGL 171 (191)
Q Consensus 159 ~~~fDlVis~~~l 171 (191)
-+..|.+|.+.+.
T Consensus 78 ~g~id~lv~~ag~ 90 (261)
T PRK08265 78 FGRVDILVNLACT 90 (261)
T ss_pred hCCCCEEEECCCC
Confidence 1468999988764
No 383
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=70.78 E-value=34 Score=27.52 Aligned_cols=77 Identities=16% Similarity=0.042 Sum_probs=45.8
Q ss_pred CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----
Q 029554 91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L----- 157 (191)
Q Consensus 91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~----- 157 (191)
.+.+||-.|+..| .+...|.+.+ .+|+.++-++.-.+.+.+.... ...++.++..|+.... +
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G--~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 79 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRG--WHVIMACRNLKKAEAAAQELGI---PPDSYTIIHIDLGDLDSVRRFVDDFRA 79 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHhhc---cCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 3456888886543 2233445555 7899999887655554443321 2234677777865432 1
Q ss_pred CCCCcceEEeCCccc
Q 029554 158 KESSLDLAISCLGLH 172 (191)
Q Consensus 158 ~~~~fDlVis~~~l~ 172 (191)
..+..|+||.+.+..
T Consensus 80 ~~~~iD~li~nAg~~ 94 (322)
T PRK07453 80 LGKPLDALVCNAAVY 94 (322)
T ss_pred hCCCccEEEECCccc
Confidence 124589999987753
No 384
>PRK08643 acetoin reductase; Validated
Probab=70.73 E-value=35 Score=26.17 Aligned_cols=75 Identities=19% Similarity=0.176 Sum_probs=44.0
Q ss_pred CeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------CCC
Q 029554 93 PTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------LKE 159 (191)
Q Consensus 93 ~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~~~ 159 (191)
.++|=.|+..| .+...|.+.+ .+|+.++.++..++...+.... ...++.++..|+.... -..
T Consensus 3 k~~lItGas~giG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 77 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDG--FKVAIVDYNEETAQAAADKLSK---DGGKAIAVKADVSDRDQVFAAVRQVVDTF 77 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh---cCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 35676675433 2233444555 7899999887766555544432 2234666777765421 012
Q ss_pred CCcceEEeCCccc
Q 029554 160 SSLDLAISCLGLH 172 (191)
Q Consensus 160 ~~fDlVis~~~l~ 172 (191)
+..|.||.+.+..
T Consensus 78 ~~id~vi~~ag~~ 90 (256)
T PRK08643 78 GDLNVVVNNAGVA 90 (256)
T ss_pred CCCCEEEECCCCC
Confidence 4689999887653
No 385
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=70.69 E-value=17 Score=31.22 Aligned_cols=115 Identities=22% Similarity=0.290 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHHHHHh------c-ccCCCeEEEEc---CCc----cHHHHHHhhcCCCceEEEEECCh-hHHHHHHHhhh
Q 029554 72 SFVDAVAENLLDRLED------C-RKTFPTALCLG---GSL----EAVRRLLRGRGGIEKLIMMDTSY-DMLKLCKDAQQ 136 (191)
Q Consensus 72 ~~~~~~~~~l~~~l~~------~-~~~~~~VLDlG---cG~----G~~~~~l~~~~~~~~v~~vD~s~-~~l~~a~~~~~ 136 (191)
++...+-++|...+.. + ..++..||=+| +|- |-++.+|.+.+...-++++|.-. ..+++.++-..
T Consensus 73 ~~iKiV~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~ 152 (451)
T COG0541 73 QFIKIVYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAE 152 (451)
T ss_pred HHHHHHHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHH
Confidence 3444455666666652 1 12345677774 442 34445555555345578888654 56777766553
Q ss_pred hccCCCCceeeEecCCCCCC----------CCCCCcceEEeC-CcccCcC-ChHHHHHHHHhccCCC
Q 029554 137 DAHNDNIETCFVVGDEEFLP----------LKESSLDLAISC-LGLHWTN-DLPGAMIQVSIFLLPD 191 (191)
Q Consensus 137 ~~~~~~~~~~~~~~d~~~l~----------~~~~~fDlVis~-~~l~~~~-d~~~~l~~i~r~Lkpg 191 (191)
+ ..+.|+..+.+..| +....||+||.- .+=||++ ++-.-+.+|.++++|+
T Consensus 153 q-----~~v~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~ 214 (451)
T COG0541 153 Q-----VGVPFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPD 214 (451)
T ss_pred H-----cCCceecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCC
Confidence 3 23555554444444 345679999884 4445554 4556788888999985
No 386
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=70.68 E-value=16 Score=24.94 Aligned_cols=75 Identities=20% Similarity=0.282 Sum_probs=45.1
Q ss_pred CccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC-----C-CCCCCcceEEeCCcccCc
Q 029554 101 SLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-----P-LKESSLDLAISCLGLHWT 174 (191)
Q Consensus 101 G~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l-----~-~~~~~fDlVis~~~l~~~ 174 (191)
|.|..+..+++... .+++++|.++.-++.+++... ..++..+...+ . .++..+|+|+-+.+
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga--------~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g---- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGA--------DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG---- 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTE--------SEEEETTTSSHHHHHHHHTTTSSEEEEEESSS----
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhcc--------cccccccccccccccccccccccceEEEEecC----
Confidence 34667777766554 999999999998888865421 11122111110 1 23357999987644
Q ss_pred CChHHHHHHHHhccCC
Q 029554 175 NDLPGAMIQVSIFLLP 190 (191)
Q Consensus 175 ~d~~~~l~~i~r~Lkp 190 (191)
-...+.....+|+|
T Consensus 68 --~~~~~~~~~~~l~~ 81 (130)
T PF00107_consen 68 --SGDTLQEAIKLLRP 81 (130)
T ss_dssp --SHHHHHHHHHHEEE
T ss_pred --cHHHHHHHHHHhcc
Confidence 14566666666665
No 387
>PRK09072 short chain dehydrogenase; Provisional
Probab=70.36 E-value=40 Score=26.03 Aligned_cols=76 Identities=17% Similarity=0.165 Sum_probs=46.7
Q ss_pred CCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC---------CCC
Q 029554 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP---------LKE 159 (191)
Q Consensus 92 ~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~---------~~~ 159 (191)
+.+||=.|++.| .+...|.+.+ .+|++++.++.-++...+... ...++.++..|+.... ...
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 78 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAG--ARLLLVGRNAEKLEALAARLP----YPGRHRWVVADLTSEAGREAVLARAREM 78 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHh----cCCceEEEEccCCCHHHHHHHHHHHHhc
Confidence 456788886543 2344455556 789999998876665544431 2235677777765421 012
Q ss_pred CCcceEEeCCcccC
Q 029554 160 SSLDLAISCLGLHW 173 (191)
Q Consensus 160 ~~fDlVis~~~l~~ 173 (191)
+..|.|+.+.+..+
T Consensus 79 ~~id~lv~~ag~~~ 92 (263)
T PRK09072 79 GGINVLINNAGVNH 92 (263)
T ss_pred CCCCEEEECCCCCC
Confidence 56899998876543
No 388
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=70.01 E-value=11 Score=26.46 Aligned_cols=75 Identities=13% Similarity=0.094 Sum_probs=41.8
Q ss_pred CCCeEEEEcCCcc--HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC
Q 029554 91 TFPTALCLGGSLE--AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC 168 (191)
Q Consensus 91 ~~~~VLDlGcG~G--~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~ 168 (191)
.+.+||=+|+|.- .....|...+ ..+++.+.-+.+-.+...+.+. ...+.+. +.+++.-.-..+|+||+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g-~~~i~i~nRt~~ra~~l~~~~~-----~~~~~~~--~~~~~~~~~~~~DivI~a 82 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALG-AKEITIVNRTPERAEALAEEFG-----GVNIEAI--PLEDLEEALQEADIVINA 82 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTT-SSEEEEEESSHHHHHHHHHHHT-----GCSEEEE--EGGGHCHHHHTESEEEE-
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHcC-----cccccee--eHHHHHHHHhhCCeEEEe
Confidence 5778999998643 2233444443 5679999988765554444431 1112233 233332112469999987
Q ss_pred CcccC
Q 029554 169 LGLHW 173 (191)
Q Consensus 169 ~~l~~ 173 (191)
-...+
T Consensus 83 T~~~~ 87 (135)
T PF01488_consen 83 TPSGM 87 (135)
T ss_dssp SSTTS
T ss_pred cCCCC
Confidence 66544
No 389
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=69.84 E-value=29 Score=27.88 Aligned_cols=41 Identities=15% Similarity=0.040 Sum_probs=26.8
Q ss_pred CCCeEEEEcCC-ccHHHHHHhhcCCCceEEEEECChhHHHHH
Q 029554 91 TFPTALCLGGS-LEAVRRLLRGRGGIEKLIMMDTSYDMLKLC 131 (191)
Q Consensus 91 ~~~~VLDlGcG-~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a 131 (191)
++.+||=+||| .|.++..+++......++++|.++..++.+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a 185 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGA 185 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhh
Confidence 45678888875 345555565554445677889887766555
No 390
>PRK05650 short chain dehydrogenase; Provisional
Probab=69.74 E-value=37 Score=26.38 Aligned_cols=75 Identities=12% Similarity=0.079 Sum_probs=43.3
Q ss_pred eEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----CCC
Q 029554 94 TALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----KES 160 (191)
Q Consensus 94 ~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----~~~ 160 (191)
+||-.|+..| .+...|.+.+ .+|+.++.+..-++...+.... ...++.++..|+.... + .-+
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g--~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~ 76 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREG--WRLALADVNEEGGEETLKLLRE---AGGDGFYQRCDVRDYSQLTALAQACEEKWG 76 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh---cCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4676775433 2233445555 7899999887655554443322 2334666777765321 0 114
Q ss_pred CcceEEeCCcccC
Q 029554 161 SLDLAISCLGLHW 173 (191)
Q Consensus 161 ~fDlVis~~~l~~ 173 (191)
.+|.||.+.+...
T Consensus 77 ~id~lI~~ag~~~ 89 (270)
T PRK05650 77 GIDVIVNNAGVAS 89 (270)
T ss_pred CCCEEEECCCCCC
Confidence 6899999877543
No 391
>PRK06949 short chain dehydrogenase; Provisional
Probab=69.48 E-value=40 Score=25.79 Aligned_cols=75 Identities=15% Similarity=0.170 Sum_probs=45.3
Q ss_pred CCCeEEEEcCCccHHHHHH----hhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------
Q 029554 91 TFPTALCLGGSLEAVRRLL----RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP---------- 156 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l----~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~---------- 156 (191)
.+.+||-.|+ +|.++..+ .+.+ .+|++++.+++.++...+.... ...++.++..|+....
T Consensus 8 ~~k~ilItGa-sg~IG~~~a~~l~~~G--~~Vi~~~r~~~~~~~~~~~l~~---~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (258)
T PRK06949 8 EGKVALVTGA-SSGLGARFAQVLAQAG--AKVVLASRRVERLKELRAEIEA---EGGAAHVVSLDVTDYQSIKAAVAHAE 81 (258)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 3467888884 44444444 3444 6899999988776655544322 2234667777765321
Q ss_pred CCCCCcceEEeCCcc
Q 029554 157 LKESSLDLAISCLGL 171 (191)
Q Consensus 157 ~~~~~fDlVis~~~l 171 (191)
-..+..|+|+.+.+.
T Consensus 82 ~~~~~~d~li~~ag~ 96 (258)
T PRK06949 82 TEAGTIDILVNNSGV 96 (258)
T ss_pred HhcCCCCEEEECCCC
Confidence 012468999988764
No 392
>PRK07791 short chain dehydrogenase; Provisional
Probab=69.36 E-value=36 Score=26.96 Aligned_cols=78 Identities=13% Similarity=0.046 Sum_probs=44.7
Q ss_pred CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECCh---------hHHHHHHHhhhhccCCCCceeeEecCCCCCC--
Q 029554 91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSY---------DMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-- 156 (191)
Q Consensus 91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~---------~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-- 156 (191)
.+.++|-.|++.| .+...|++.+ .+|+.++.+. .-++...+.... ...++.++..|+....
T Consensus 5 ~~k~~lITGas~GIG~aia~~la~~G--~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~Dv~~~~~v 79 (286)
T PRK07791 5 DGRVVIVTGAGGGIGRAHALAFAAEG--ARVVVNDIGVGLDGSASGGSAAQAVVDEIVA---AGGEAVANGDDIADWDGA 79 (286)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--CEEEEeeCCccccccccchhHHHHHHHHHHh---cCCceEEEeCCCCCHHHH
Confidence 3567888887665 2334455556 7888888664 333333333321 2234566667765321
Q ss_pred --------CCCCCcceEEeCCcccC
Q 029554 157 --------LKESSLDLAISCLGLHW 173 (191)
Q Consensus 157 --------~~~~~fDlVis~~~l~~ 173 (191)
-.-+..|.+|.|.++..
T Consensus 80 ~~~~~~~~~~~g~id~lv~nAG~~~ 104 (286)
T PRK07791 80 ANLVDAAVETFGGLDVLVNNAGILR 104 (286)
T ss_pred HHHHHHHHHhcCCCCEEEECCCCCC
Confidence 01257899999887643
No 393
>PRK06197 short chain dehydrogenase; Provisional
Probab=69.23 E-value=46 Score=26.54 Aligned_cols=78 Identities=18% Similarity=0.185 Sum_probs=45.7
Q ss_pred CCCeEEEEcCCccHHHH----HHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--------C-
Q 029554 91 TFPTALCLGGSLEAVRR----LLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--------L- 157 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~----~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--------~- 157 (191)
.+.+||=.|+. |.++. .|.+.+ .+|+.++-++.-.+.+.+..... ....++.++..|+.... .
T Consensus 15 ~~k~vlItGas-~gIG~~~a~~l~~~G--~~vi~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 90 (306)
T PRK06197 15 SGRVAVVTGAN-TGLGYETAAALAAKG--AHVVLAVRNLDKGKAAAARITAA-TPGADVTLQELDLTSLASVRAAADALR 90 (306)
T ss_pred CCCEEEEcCCC-CcHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHHh-CCCCceEEEECCCCCHHHHHHHHHHHH
Confidence 44578877754 43333 344555 68999988876555544433210 11234677778876432 0
Q ss_pred -CCCCcceEEeCCccc
Q 029554 158 -KESSLDLAISCLGLH 172 (191)
Q Consensus 158 -~~~~fDlVis~~~l~ 172 (191)
..+.+|+||.+.+..
T Consensus 91 ~~~~~iD~li~nAg~~ 106 (306)
T PRK06197 91 AAYPRIDLLINNAGVM 106 (306)
T ss_pred hhCCCCCEEEECCccc
Confidence 124689999988754
No 394
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=69.21 E-value=27 Score=26.73 Aligned_cols=76 Identities=16% Similarity=0.150 Sum_probs=43.6
Q ss_pred CCCeEEEEcCCccHHHH----HHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------
Q 029554 91 TFPTALCLGGSLEAVRR----LLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP---------- 156 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~----~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~---------- 156 (191)
++.+||=.|+ +|.++. .|.+.+ .+|++++.+..-++...+.... ....++.++..|+....
T Consensus 11 ~~k~vlItG~-~g~iG~~la~~l~~~G--~~Vi~~~r~~~~~~~~~~~l~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~ 85 (247)
T PRK08945 11 KDRIILVTGA-GDGIGREAALTYARHG--ATVILLGRTEEKLEAVYDEIEA--AGGPQPAIIPLDLLTATPQNYQQLADT 85 (247)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHh--cCCCCceEEEecccCCCHHHHHHHHHH
Confidence 4567888885 444444 344445 6899999987665554443332 12223555666654211
Q ss_pred --CCCCCcceEEeCCcc
Q 029554 157 --LKESSLDLAISCLGL 171 (191)
Q Consensus 157 --~~~~~fDlVis~~~l 171 (191)
-..+..|.||.+.+.
T Consensus 86 ~~~~~~~id~vi~~Ag~ 102 (247)
T PRK08945 86 IEEQFGRLDGVLHNAGL 102 (247)
T ss_pred HHHHhCCCCEEEECCcc
Confidence 011468999987654
No 395
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=69.19 E-value=36 Score=26.18 Aligned_cols=76 Identities=14% Similarity=0.218 Sum_probs=46.9
Q ss_pred CCCeEEEEcCCccHHHHHHh----hcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-C--------
Q 029554 91 TFPTALCLGGSLEAVRRLLR----GRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-L-------- 157 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l~----~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-~-------- 157 (191)
.+.+||=.|+ +|.++..++ +.+ .+|+.++-+..-++...+.... ...++.++.+|+.... .
T Consensus 11 ~~k~ilItGa-~g~IG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~i~~---~~~~~~~~~~Dl~d~~~i~~~~~~~~ 84 (259)
T PRK08213 11 SGKTALVTGG-SRGLGLQIAEALGEAG--ARVVLSARKAEELEEAAAHLEA---LGIDALWIAADVADEADIERLAEETL 84 (259)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHh---cCCeEEEEEccCCCHHHHHHHHHHHH
Confidence 4567888884 455555444 445 6899999888766655544432 2334667778866421 0
Q ss_pred -CCCCcceEEeCCccc
Q 029554 158 -KESSLDLAISCLGLH 172 (191)
Q Consensus 158 -~~~~fDlVis~~~l~ 172 (191)
..+..|.|+.+.+..
T Consensus 85 ~~~~~id~vi~~ag~~ 100 (259)
T PRK08213 85 ERFGHVDILVNNAGAT 100 (259)
T ss_pred HHhCCCCEEEECCCCC
Confidence 114689999887653
No 396
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=69.16 E-value=42 Score=25.75 Aligned_cols=76 Identities=14% Similarity=0.185 Sum_probs=46.5
Q ss_pred CCCeEEEEcCCccHHHHHH----hhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C----
Q 029554 91 TFPTALCLGGSLEAVRRLL----RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L---- 157 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l----~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~---- 157 (191)
.+.+||=.|+ +|.++..+ .+.+ .+|++++-++..++...+.... ...++.++..|+.... +
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~i~~---~~~~~~~~~~D~~~~~~~~~~~~~~~ 82 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAG--AEVILNGRDPAKLAAAAESLKG---QGLSAHALAFDVTDHDAVRAAIDAFE 82 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHh---cCceEEEEEccCCCHHHHHHHHHHHH
Confidence 3567888885 44444444 4445 7899999988766555444432 2234666777765421 0
Q ss_pred -CCCCcceEEeCCccc
Q 029554 158 -KESSLDLAISCLGLH 172 (191)
Q Consensus 158 -~~~~fDlVis~~~l~ 172 (191)
.-+..|.||.+.+..
T Consensus 83 ~~~~~~d~li~~ag~~ 98 (255)
T PRK07523 83 AEIGPIDILVNNAGMQ 98 (255)
T ss_pred HhcCCCCEEEECCCCC
Confidence 124689999887654
No 397
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=69.02 E-value=24 Score=27.98 Aligned_cols=47 Identities=9% Similarity=0.011 Sum_probs=41.5
Q ss_pred ccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhh
Q 029554 89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD 137 (191)
Q Consensus 89 ~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~ 137 (191)
..++..|||-=+|+|..+......+ ..++|+|+++..++.+.++...
T Consensus 220 s~~~diVlDpf~GsGtt~~aa~~~~--r~~ig~e~~~~y~~~~~~r~~~ 266 (302)
T COG0863 220 SFPGDIVLDPFAGSGTTGIAAKNLG--RRFIGIEINPEYVEVALKRLQE 266 (302)
T ss_pred CCCCCEEeecCCCCChHHHHHHHcC--CceEEEecCHHHHHHHHHHHHh
Confidence 5688899999999999988887776 8899999999999999998864
No 398
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=68.87 E-value=46 Score=26.53 Aligned_cols=82 Identities=21% Similarity=0.132 Sum_probs=56.6
Q ss_pred CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554 91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L 157 (191)
Q Consensus 91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~ 157 (191)
.+..+|--|.+.| .....|++.+ ++|+.++.+++.++...+..........++..+..|+...+ -
T Consensus 7 ~gkvalVTG~s~GIG~aia~~la~~G--a~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~ 84 (270)
T KOG0725|consen 7 AGKVALVTGGSSGIGKAIALLLAKAG--AKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVE 84 (270)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHH
Confidence 4566788887666 4456677777 99999999999888777665432223445777778875332 1
Q ss_pred C-CCCcceEEeCCcccCc
Q 029554 158 K-ESSLDLAISCLGLHWT 174 (191)
Q Consensus 158 ~-~~~fDlVis~~~l~~~ 174 (191)
. .+..|++++|.+....
T Consensus 85 ~~~GkidiLvnnag~~~~ 102 (270)
T KOG0725|consen 85 KFFGKIDILVNNAGALGL 102 (270)
T ss_pred HhCCCCCEEEEcCCcCCC
Confidence 1 4789999998876543
No 399
>PRK05599 hypothetical protein; Provisional
Probab=68.81 E-value=38 Score=26.06 Aligned_cols=74 Identities=18% Similarity=0.265 Sum_probs=43.0
Q ss_pred eEEEEcCCccH---HHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------CCCC
Q 029554 94 TALCLGGSLEA---VRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------LKES 160 (191)
Q Consensus 94 ~VLDlGcG~G~---~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~~~~ 160 (191)
.+|-.|++.|. +...|. .+ .+|+.++-++.-++...+.... .....+.++..|+.... -..+
T Consensus 2 ~vlItGas~GIG~aia~~l~-~g--~~Vil~~r~~~~~~~~~~~l~~--~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 76 (246)
T PRK05599 2 SILILGGTSDIAGEIATLLC-HG--EDVVLAARRPEAAQGLASDLRQ--RGATSVHVLSFDAQDLDTHRELVKQTQELAG 76 (246)
T ss_pred eEEEEeCccHHHHHHHHHHh-CC--CEEEEEeCCHHHHHHHHHHHHh--ccCCceEEEEcccCCHHHHHHHHHHHHHhcC
Confidence 36667776552 233344 24 7888888887766665555432 11223566677755421 1125
Q ss_pred CcceEEeCCccc
Q 029554 161 SLDLAISCLGLH 172 (191)
Q Consensus 161 ~fDlVis~~~l~ 172 (191)
..|++|.|.+..
T Consensus 77 ~id~lv~nag~~ 88 (246)
T PRK05599 77 EISLAVVAFGIL 88 (246)
T ss_pred CCCEEEEecCcC
Confidence 789999887653
No 400
>PRK12939 short chain dehydrogenase; Provisional
Probab=68.38 E-value=33 Score=26.08 Aligned_cols=74 Identities=14% Similarity=0.065 Sum_probs=44.6
Q ss_pred CCeEEEEcCCccHHHHHH----hhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----CC----
Q 029554 92 FPTALCLGGSLEAVRRLL----RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK---- 158 (191)
Q Consensus 92 ~~~VLDlGcG~G~~~~~l----~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~~---- 158 (191)
+.+||=.|+ +|.++..+ .+.+ .++++++.++.-+....+.... ...++.++..|+.... +.
T Consensus 7 ~~~vlItGa-~g~iG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 80 (250)
T PRK12939 7 GKRALVTGA-ARGLGAAFAEALAEAG--ATVAFNDGLAAEARELAAALEA---AGGRAHAIAADLADPASVQRFFDAAAA 80 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 456787775 44444444 4445 6899998887765555444332 2335777778875421 10
Q ss_pred -CCCcceEEeCCcc
Q 029554 159 -ESSLDLAISCLGL 171 (191)
Q Consensus 159 -~~~fDlVis~~~l 171 (191)
-+..|.|+.+.+.
T Consensus 81 ~~~~id~vi~~ag~ 94 (250)
T PRK12939 81 ALGGLDGLVNNAGI 94 (250)
T ss_pred HcCCCCEEEECCCC
Confidence 1468999987764
No 401
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=68.11 E-value=35 Score=27.52 Aligned_cols=80 Identities=16% Similarity=0.120 Sum_probs=54.7
Q ss_pred CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554 91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L 157 (191)
Q Consensus 91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~ 157 (191)
.+..||=-||..| .++..+++.+ .+++.+--..+-++...+...+..... ++...++|+.+.. .
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G--~~l~lvar~~rrl~~v~~~l~~~~~~~-~v~~~~~Dvs~~~~~~~~~~~~~~ 87 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRG--AKLVLVARRARRLERVAEELRKLGSLE-KVLVLQLDVSDEESVKKFVEWAIR 87 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCC--CceEEeehhhhhHHHHHHHHHHhCCcC-ccEEEeCccCCHHHHHHHHHHHHH
Confidence 4567788888776 3455667777 788888878777777755554422222 5888888877542 2
Q ss_pred CCCCcceEEeCCcccC
Q 029554 158 KESSLDLAISCLGLHW 173 (191)
Q Consensus 158 ~~~~fDlVis~~~l~~ 173 (191)
.-+..|+.|+|.++-.
T Consensus 88 ~fg~vDvLVNNAG~~~ 103 (282)
T KOG1205|consen 88 HFGRVDVLVNNAGISL 103 (282)
T ss_pred hcCCCCEEEecCcccc
Confidence 3478999999988765
No 402
>PRK09242 tropinone reductase; Provisional
Probab=68.00 E-value=44 Score=25.67 Aligned_cols=78 Identities=21% Similarity=0.162 Sum_probs=47.1
Q ss_pred CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554 91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L 157 (191)
Q Consensus 91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~ 157 (191)
.+.++|-.|++.| .+...|.+.+ .+|+.++.+++.++...+..... ....++.++..|+.... -
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G--~~v~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLG--ADVLIVARDADALAQARDELAEE-FPEREVHGLAADVSDDEDRRAILDWVED 84 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHhh-CCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 3457888887544 2334445555 78999998887666655544321 11235667777765321 0
Q ss_pred CCCCcceEEeCCcc
Q 029554 158 KESSLDLAISCLGL 171 (191)
Q Consensus 158 ~~~~fDlVis~~~l 171 (191)
.-+.+|.|+.+.+.
T Consensus 85 ~~g~id~li~~ag~ 98 (257)
T PRK09242 85 HWDGLHILVNNAGG 98 (257)
T ss_pred HcCCCCEEEECCCC
Confidence 12568999988765
No 403
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=67.85 E-value=41 Score=27.44 Aligned_cols=87 Identities=16% Similarity=0.138 Sum_probs=45.3
Q ss_pred CCCeEEEEcCCc-cHHHHHHhhcCCCceEEEEEC---ChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEE
Q 029554 91 TFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDT---SYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAI 166 (191)
Q Consensus 91 ~~~~VLDlGcG~-G~~~~~l~~~~~~~~v~~vD~---s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVi 166 (191)
++.+||=+|+|. |.++..+++... .++++++. ++.-++.+++.. ...+.....+..... ..+.+|+|+
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G-~~vi~~~~~~~~~~~~~~~~~~G------a~~v~~~~~~~~~~~-~~~~~d~vi 243 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRG-FEVYVLNRRDPPDPKADIVEELG------ATYVNSSKTPVAEVK-LVGEFDLII 243 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEecCCCCHHHHHHHHHcC------CEEecCCccchhhhh-hcCCCCEEE
Confidence 567899898853 444445554432 57999987 566666654321 110110001111111 124689888
Q ss_pred eCCcccCcCChHHHHHHHHhccCCC
Q 029554 167 SCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 167 s~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
-..+- ...+.+..++|+++
T Consensus 244 d~~g~------~~~~~~~~~~l~~~ 262 (355)
T cd08230 244 EATGV------PPLAFEALPALAPN 262 (355)
T ss_pred ECcCC------HHHHHHHHHHccCC
Confidence 76441 22556666667664
No 404
>PRK07576 short chain dehydrogenase; Provisional
Probab=67.84 E-value=45 Score=25.90 Aligned_cols=75 Identities=13% Similarity=0.117 Sum_probs=43.6
Q ss_pred CCCeEEEEcCCccHHHH----HHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C----
Q 029554 91 TFPTALCLGGSLEAVRR----LLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L---- 157 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~----~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~---- 157 (191)
...+||-.|. +|.++. .|...+ .+|++++.++.-+....+.... ...++.++..|+.... +
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~i~~~~~~~~ 81 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAG--ANVAVASRSQEKVDAAVAQLQQ---AGPEGLGVSADVRDYAAVEAAFAQIA 81 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHH---hCCceEEEECCCCCHHHHHHHHHHHH
Confidence 3457887775 443433 444555 7899999887765554433322 1223566677765321 0
Q ss_pred -CCCCcceEEeCCcc
Q 029554 158 -KESSLDLAISCLGL 171 (191)
Q Consensus 158 -~~~~fDlVis~~~l 171 (191)
..+.+|.||.+...
T Consensus 82 ~~~~~iD~vi~~ag~ 96 (264)
T PRK07576 82 DEFGPIDVLVSGAAG 96 (264)
T ss_pred HHcCCCCEEEECCCC
Confidence 12468999987653
No 405
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=67.41 E-value=16 Score=27.68 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCc-cH-HHHHHhhcCCCceEEEEECC
Q 029554 91 TFPTALCLGGSL-EA-VRRLLRGRGGIEKLIMMDTS 124 (191)
Q Consensus 91 ~~~~VLDlGcG~-G~-~~~~l~~~~~~~~v~~vD~s 124 (191)
...+||=+|||. |. ....|...+ ..+++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~G-v~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAG-VGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcC-CCeEEEecCC
Confidence 346799999983 44 344555544 5789999977
No 406
>PLN02780 ketoreductase/ oxidoreductase
Probab=67.05 E-value=64 Score=26.20 Aligned_cols=79 Identities=20% Similarity=0.161 Sum_probs=47.1
Q ss_pred CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC-CC---------C
Q 029554 91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LP---------L 157 (191)
Q Consensus 91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~-l~---------~ 157 (191)
.+..+|=.|++.| .++..|++.+ .+|+.++.+++-++...+..... ....++..+..|+.. .. +
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G--~~Vil~~R~~~~l~~~~~~l~~~-~~~~~~~~~~~Dl~~~~~~~~~~l~~~~ 128 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKG--LNLVLVARNPDKLKDVSDSIQSK-YSKTQIKTVVVDFSGDIDEGVKRIKETI 128 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHHHHHHH-CCCcEEEEEEEECCCCcHHHHHHHHHHh
Confidence 4567888887655 3455556666 78999999998777665554321 112245556666542 11 1
Q ss_pred CCCCcceEEeCCccc
Q 029554 158 KESSLDLAISCLGLH 172 (191)
Q Consensus 158 ~~~~fDlVis~~~l~ 172 (191)
.....|++|.|.+..
T Consensus 129 ~~~didilVnnAG~~ 143 (320)
T PLN02780 129 EGLDVGVLINNVGVS 143 (320)
T ss_pred cCCCccEEEEecCcC
Confidence 112355888877654
No 407
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=67.00 E-value=43 Score=25.80 Aligned_cols=76 Identities=12% Similarity=0.069 Sum_probs=43.2
Q ss_pred CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----
Q 029554 91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L----- 157 (191)
Q Consensus 91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~----- 157 (191)
.+.++|-.|++.| .+...|.+.+ .+|+.++.++. +...+.... ...++.++..|+.... +
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G--~~vv~~~~~~~--~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (251)
T PRK12481 7 NGKVAIITGCNTGLGQGMAIGLAKAG--ADIVGVGVAEA--PETQAQVEA---LGRKFHFITADLIQQKDIDSIVSQAVE 79 (251)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--CEEEEecCchH--HHHHHHHHH---cCCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence 4567888887655 3344455556 78888876542 222222221 2234667777765422 0
Q ss_pred CCCCcceEEeCCcccC
Q 029554 158 KESSLDLAISCLGLHW 173 (191)
Q Consensus 158 ~~~~fDlVis~~~l~~ 173 (191)
.-+..|.+|.+.+...
T Consensus 80 ~~g~iD~lv~~ag~~~ 95 (251)
T PRK12481 80 VMGHIDILINNAGIIR 95 (251)
T ss_pred HcCCCCEEEECCCcCC
Confidence 1256899998876543
No 408
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=66.68 E-value=52 Score=26.29 Aligned_cols=44 Identities=18% Similarity=0.275 Sum_probs=28.5
Q ss_pred cCCCeEEEEcCC-ccHHHHHHhhcCCCceEEEEECChhHHHHHHH
Q 029554 90 KTFPTALCLGGS-LEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (191)
Q Consensus 90 ~~~~~VLDlGcG-~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~ 133 (191)
.++.+||-+|+| .|.....+++......+++++.++...+.+++
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~ 202 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKK 202 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 466789999864 24444445554433348999999887777643
No 409
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=66.65 E-value=12 Score=30.37 Aligned_cols=75 Identities=19% Similarity=0.168 Sum_probs=39.7
Q ss_pred CCccHHHHHHhhc---CCCceEEEEECChhHHHHHHHhhhhccCCCCcee----eEecCCCCCC-----CCCCCcceEEe
Q 029554 100 GSLEAVRRLLRGR---GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETC----FVVGDEEFLP-----LKESSLDLAIS 167 (191)
Q Consensus 100 cG~G~~~~~l~~~---~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~----~~~~d~~~l~-----~~~~~fDlVis 167 (191)
.|+|.++..|.+. +...+++.+|.++.-+-..++.+... ....++. .+.+|+..-. +.....|+|+-
T Consensus 5 Ga~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~-~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVfH 83 (293)
T PF02719_consen 5 GAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSR-FPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVFH 83 (293)
T ss_dssp TTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHH-C--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEEE
T ss_pred ccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhc-ccccCcccccCceeecccCHHHHHHHHhhcCCCEEEE
Confidence 3677777766543 23478999999999888887776421 1122233 3467765322 55568999999
Q ss_pred CCcccCcC
Q 029554 168 CLGLHWTN 175 (191)
Q Consensus 168 ~~~l~~~~ 175 (191)
..++.|++
T Consensus 84 aAA~KhVp 91 (293)
T PF02719_consen 84 AAALKHVP 91 (293)
T ss_dssp ------HH
T ss_pred ChhcCCCC
Confidence 99999984
No 410
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=66.44 E-value=41 Score=25.89 Aligned_cols=76 Identities=14% Similarity=0.165 Sum_probs=44.4
Q ss_pred CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----
Q 029554 91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L----- 157 (191)
Q Consensus 91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~----- 157 (191)
.+.+||=.|++.| .+...|.+.+ .+|+.++.++. .+.+.+.... ...++.++..|+.... +
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G--~~v~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~D~~~~~~i~~~~~~~~~ 87 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAG--ADIIITTHGTN-WDETRRLIEK---EGRKVTFVQVDLTKPESAEKVVKEALE 87 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEeCCcH-HHHHHHHHHh---cCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 4567888887655 3344455556 78888887733 3333333322 2234677777766422 0
Q ss_pred CCCCcceEEeCCccc
Q 029554 158 KESSLDLAISCLGLH 172 (191)
Q Consensus 158 ~~~~fDlVis~~~l~ 172 (191)
.-+..|.+|.+.+..
T Consensus 88 ~~g~id~li~~ag~~ 102 (258)
T PRK06935 88 EFGKIDILVNNAGTI 102 (258)
T ss_pred HcCCCCEEEECCCCC
Confidence 114689999887653
No 411
>PRK08251 short chain dehydrogenase; Provisional
Probab=66.30 E-value=56 Score=24.85 Aligned_cols=76 Identities=17% Similarity=0.124 Sum_probs=45.6
Q ss_pred CeEEEEcCCccHHHHHH----hhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------CC
Q 029554 93 PTALCLGGSLEAVRRLL----RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------LK 158 (191)
Q Consensus 93 ~~VLDlGcG~G~~~~~l----~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~~ 158 (191)
.++|-.|+ +|.++..+ .+.+ .+|+.++.++..++...+.... .....++.+...|+.... -.
T Consensus 3 k~vlItGa-s~giG~~la~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (248)
T PRK08251 3 QKILITGA-SSGLGAGMAREFAAKG--RDLALCARRTDRLEELKAELLA-RYPGIKVAVAALDVNDHDQVFEVFAEFRDE 78 (248)
T ss_pred CEEEEECC-CCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHh-hCCCceEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 45777775 45555544 4444 6899999888776655444322 012335677777866431 11
Q ss_pred CCCcceEEeCCccc
Q 029554 159 ESSLDLAISCLGLH 172 (191)
Q Consensus 159 ~~~fDlVis~~~l~ 172 (191)
-+..|.|+.+.+..
T Consensus 79 ~~~id~vi~~ag~~ 92 (248)
T PRK08251 79 LGGLDRVIVNAGIG 92 (248)
T ss_pred cCCCCEEEECCCcC
Confidence 24689999887653
No 412
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=66.07 E-value=45 Score=25.34 Aligned_cols=74 Identities=15% Similarity=0.167 Sum_probs=44.0
Q ss_pred CCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----C
Q 029554 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----K 158 (191)
Q Consensus 92 ~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----~ 158 (191)
+.+||=+|+..| .+...|.+.+ .+|++++-++.-.+....... ...++.++..|+.... + .
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G--~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEG--ARVVVTDRNEEAAERVAAEIL----AGGRAIAVAADVSDEADVEAAVAAALER 78 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHh----cCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 356777776433 2333445555 789999999866555444332 1234677777765422 0 1
Q ss_pred CCCcceEEeCCcc
Q 029554 159 ESSLDLAISCLGL 171 (191)
Q Consensus 159 ~~~fDlVis~~~l 171 (191)
.+.+|.||.+.+.
T Consensus 79 ~~~~d~vi~~ag~ 91 (251)
T PRK07231 79 FGSVDILVNNAGT 91 (251)
T ss_pred hCCCCEEEECCCC
Confidence 1368999988765
No 413
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=65.75 E-value=33 Score=24.17 Aligned_cols=43 Identities=21% Similarity=0.252 Sum_probs=27.0
Q ss_pred CCCeEEEEcCCc--cHHHHHHhhcCCCceEEEEECChhHHHHHHHh
Q 029554 91 TFPTALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDA 134 (191)
Q Consensus 91 ~~~~VLDlGcG~--G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~ 134 (191)
...+|+-+|||. ......+.+.+ ..+++.+|.++.-.+...+.
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~ 62 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELG-AAKIVIVNRTLEKAKALAER 62 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHH
Confidence 457899999863 12333444442 36899999998765554443
No 414
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=65.66 E-value=43 Score=25.87 Aligned_cols=73 Identities=19% Similarity=0.182 Sum_probs=44.6
Q ss_pred CCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------CC
Q 029554 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------LK 158 (191)
Q Consensus 92 ~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~~ 158 (191)
+.+||=.|++.| .+...|.+.+ .+|+.++-++..++...+.. ..++.++..|+.... -.
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAEG--ARVAVLERSAEKLASLRQRF------GDHVLVVEGDVTSYADNQRAVDQTVDA 77 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHh------CCcceEEEccCCCHHHHHHHHHHHHHh
Confidence 457888886544 2334455555 78999999887665554332 123566677765321 01
Q ss_pred CCCcceEEeCCccc
Q 029554 159 ESSLDLAISCLGLH 172 (191)
Q Consensus 159 ~~~fDlVis~~~l~ 172 (191)
.+..|++|.+.++.
T Consensus 78 ~g~id~li~~ag~~ 91 (263)
T PRK06200 78 FGKLDCFVGNAGIW 91 (263)
T ss_pred cCCCCEEEECCCCc
Confidence 24689999887753
No 415
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=65.51 E-value=38 Score=27.23 Aligned_cols=81 Identities=12% Similarity=0.089 Sum_probs=38.3
Q ss_pred CCCeEEEEcCCccHHHH---HHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC---CCCCCCCcce
Q 029554 91 TFPTALCLGGSLEAVRR---LLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF---LPLKESSLDL 164 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~---~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~---l~~~~~~fDl 164 (191)
.+.++|=+|+| |.-.. .|...+ ..+|+.++.+++..+.+++..+........+.+...|... +.-.-..+|+
T Consensus 125 ~~k~vlI~GAG-GagrAia~~La~~G-~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Di 202 (289)
T PRK12548 125 KGKKLTVIGAG-GAATAIQVQCALDG-AKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDI 202 (289)
T ss_pred CCCEEEEECCc-HHHHHHHHHHHHCC-CCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCE
Confidence 35678999997 43322 233444 3569999988632222222211110111122333334332 1111134688
Q ss_pred EEeCCcccC
Q 029554 165 AISCLGLHW 173 (191)
Q Consensus 165 Vis~~~l~~ 173 (191)
||.+-.+..
T Consensus 203 lINaTp~Gm 211 (289)
T PRK12548 203 LVNATLVGM 211 (289)
T ss_pred EEEeCCCCC
Confidence 888766554
No 416
>PLN02253 xanthoxin dehydrogenase
Probab=65.32 E-value=44 Score=26.07 Aligned_cols=73 Identities=23% Similarity=0.332 Sum_probs=43.7
Q ss_pred CCeEEEEcCCccHHHHH----HhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----
Q 029554 92 FPTALCLGGSLEAVRRL----LRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L----- 157 (191)
Q Consensus 92 ~~~VLDlGcG~G~~~~~----l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~----- 157 (191)
+.++|=.|++ |.++.. |.+.+ .+|+.+|.++...+...+... ...++.++..|+.... +
T Consensus 18 ~k~~lItGas-~gIG~~la~~l~~~G--~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 90 (280)
T PLN02253 18 GKVALVTGGA-TGIGESIVRLFHKHG--AKVCIVDLQDDLGQNVCDSLG----GEPNVCFFHCDVTVEDDVSRAVDFTVD 90 (280)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHhc----CCCceEEEEeecCCHHHHHHHHHHHHH
Confidence 4567877754 444444 44555 789999988765544433321 1234677777765421 0
Q ss_pred CCCCcceEEeCCcc
Q 029554 158 KESSLDLAISCLGL 171 (191)
Q Consensus 158 ~~~~fDlVis~~~l 171 (191)
.-+..|.||.+.+.
T Consensus 91 ~~g~id~li~~Ag~ 104 (280)
T PLN02253 91 KFGTLDIMVNNAGL 104 (280)
T ss_pred HhCCCCEEEECCCc
Confidence 11468999988765
No 417
>PRK06720 hypothetical protein; Provisional
Probab=65.31 E-value=52 Score=24.11 Aligned_cols=79 Identities=24% Similarity=0.209 Sum_probs=45.7
Q ss_pred CCCeEEEEcCCccH---HHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC---------C-
Q 029554 91 TFPTALCLGGSLEA---VRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP---------L- 157 (191)
Q Consensus 91 ~~~~VLDlGcG~G~---~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~---------~- 157 (191)
.+..+|-.|.+.|. ....|.+.+ .+|+.+|.+...++...+.... ......++..|..... .
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G--~~V~l~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dl~~~~~v~~~v~~~~~ 89 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQG--AKVIVTDIDQESGQATVEEITN---LGGEALFVSYDMEKQGDWQRVISITLN 89 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 34567777765542 333455555 7899999887765544343322 1223555666754321 0
Q ss_pred CCCCcceEEeCCcccCc
Q 029554 158 KESSLDLAISCLGLHWT 174 (191)
Q Consensus 158 ~~~~fDlVis~~~l~~~ 174 (191)
.-+..|.++.|.++.+.
T Consensus 90 ~~G~iDilVnnAG~~~~ 106 (169)
T PRK06720 90 AFSRIDMLFQNAGLYKI 106 (169)
T ss_pred HcCCCCEEEECCCcCCC
Confidence 12568999998776553
No 418
>PRK05855 short chain dehydrogenase; Validated
Probab=64.92 E-value=43 Score=29.06 Aligned_cols=75 Identities=9% Similarity=0.071 Sum_probs=46.7
Q ss_pred CeEEEEcCCccHHHH----HHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------CC
Q 029554 93 PTALCLGGSLEAVRR----LLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------LK 158 (191)
Q Consensus 93 ~~VLDlGcG~G~~~~----~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~~ 158 (191)
.++|=+|+ +|.++. .|.+.+ .+|+.++-+..-++...+.... ...++.++..|+.... -.
T Consensus 316 ~~~lv~G~-s~giG~~~a~~l~~~G--~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 389 (582)
T PRK05855 316 KLVVVTGA-GSGIGRETALAFAREG--AEVVASDIDEAAAERTAELIRA---AGAVAHAYRVDVSDADAMEAFAEWVRAE 389 (582)
T ss_pred CEEEEECC-cCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh---cCCeEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 46777776 444444 445555 7899999988766655444432 2235677778876432 01
Q ss_pred CCCcceEEeCCcccC
Q 029554 159 ESSLDLAISCLGLHW 173 (191)
Q Consensus 159 ~~~fDlVis~~~l~~ 173 (191)
.+..|++|.|.++.+
T Consensus 390 ~g~id~lv~~Ag~~~ 404 (582)
T PRK05855 390 HGVPDIVVNNAGIGM 404 (582)
T ss_pred cCCCcEEEECCccCC
Confidence 256899999987644
No 419
>PRK07677 short chain dehydrogenase; Provisional
Probab=64.80 E-value=48 Score=25.43 Aligned_cols=74 Identities=16% Similarity=0.106 Sum_probs=44.4
Q ss_pred CeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----CC
Q 029554 93 PTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----KE 159 (191)
Q Consensus 93 ~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----~~ 159 (191)
.++|-.|++.| .+...+.+.+ .+|++++-++..++...+.... ...++.++..|+.... + .-
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G--~~Vi~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 76 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEG--ANVVITGRTKEKLEEAKLEIEQ---FPGQVLTVQMDVRNPEDVQKMVEQIDEKF 76 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 35777777554 2344455556 7899999887766555544432 1234667777765321 0 11
Q ss_pred CCcceEEeCCcc
Q 029554 160 SSLDLAISCLGL 171 (191)
Q Consensus 160 ~~fDlVis~~~l 171 (191)
+..|.||.+.+.
T Consensus 77 ~~id~lI~~ag~ 88 (252)
T PRK07677 77 GRIDALINNAAG 88 (252)
T ss_pred CCccEEEECCCC
Confidence 468999987653
No 420
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=64.74 E-value=19 Score=28.83 Aligned_cols=66 Identities=18% Similarity=0.151 Sum_probs=47.3
Q ss_pred eEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC---CCCCCcceEEeCCc
Q 029554 94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP---LKESSLDLAISCLG 170 (191)
Q Consensus 94 ~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~---~~~~~fDlVis~~~ 170 (191)
+++|+=||-|.+..-|...+ ...+.++|+++...+.-+.++. ....+|+..+. ++. .+|+++...-
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~~---------~~~~~Di~~~~~~~l~~-~~D~l~ggpP 70 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANFP---------EVICGDITEIDPSDLPK-DVDLLIGGPP 70 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHHT---------EEEESHGGGCHHHHHHH-T-SEEEEE--
T ss_pred cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhccc---------ccccccccccccccccc-cceEEEeccC
Confidence 58999999999999898876 6789999999998877776652 55666666543 343 5999987543
No 421
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=64.64 E-value=53 Score=26.32 Aligned_cols=77 Identities=17% Similarity=0.132 Sum_probs=44.8
Q ss_pred CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECCh-hHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C----
Q 029554 91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSY-DMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L---- 157 (191)
Q Consensus 91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~-~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~---- 157 (191)
.+.++|=.|++.| .+...|.+.+ .+|+.+|.+. ...+...+.... ...++.++..|+.... +
T Consensus 11 ~~k~~lVTGas~gIG~~ia~~L~~~G--a~Vv~~~~~~~~~~~~~~~~i~~---~g~~~~~~~~Dv~d~~~~~~~~~~~~ 85 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAEALGLARLG--ATVVVNDVASALDASDVLDEIRA---AGAKAVAVAGDISQRATADELVATAV 85 (306)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC--CEEEEecCCchhHHHHHHHHHHh---cCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 4567888887655 3344556666 7899998753 233333333321 2334667777765321 0
Q ss_pred CCCCcceEEeCCccc
Q 029554 158 KESSLDLAISCLGLH 172 (191)
Q Consensus 158 ~~~~fDlVis~~~l~ 172 (191)
.-+..|++|.|.+..
T Consensus 86 ~~g~iD~li~nAG~~ 100 (306)
T PRK07792 86 GLGGLDIVVNNAGIT 100 (306)
T ss_pred HhCCCCEEEECCCCC
Confidence 125789999987653
No 422
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=64.46 E-value=17 Score=30.46 Aligned_cols=44 Identities=9% Similarity=-0.158 Sum_probs=37.5
Q ss_pred CCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhh
Q 029554 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ 135 (191)
Q Consensus 92 ~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~ 135 (191)
+.++||.+|+.+.....+.+.++..+--|+++....+.....+.
T Consensus 181 ~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~ 224 (364)
T KOG1269|consen 181 GVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKK 224 (364)
T ss_pred cEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccC
Confidence 44899999999999999998887788889999999888776554
No 423
>PRK08226 short chain dehydrogenase; Provisional
Probab=64.21 E-value=54 Score=25.25 Aligned_cols=74 Identities=24% Similarity=0.302 Sum_probs=42.5
Q ss_pred CCeEEEEcCCccHHHHH----HhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----
Q 029554 92 FPTALCLGGSLEAVRRL----LRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L----- 157 (191)
Q Consensus 92 ~~~VLDlGcG~G~~~~~----l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~----- 157 (191)
+.++|-.|+. |.++.. |.+.+ .+|+.++.++...+.+.+ ... ...++.++..|+.... +
T Consensus 6 ~~~~lItG~s-~giG~~la~~l~~~G--~~Vv~~~r~~~~~~~~~~-~~~---~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 78 (263)
T PRK08226 6 GKTALITGAL-QGIGEGIARVFARHG--ANLILLDISPEIEKLADE-LCG---RGHRCTAVVADVRDPASVAAAIKRAKE 78 (263)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCC--CEEEEecCCHHHHHHHHH-HHH---hCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 4577877764 444444 44455 789999988764333322 211 2234566777765421 0
Q ss_pred CCCCcceEEeCCccc
Q 029554 158 KESSLDLAISCLGLH 172 (191)
Q Consensus 158 ~~~~fDlVis~~~l~ 172 (191)
..+..|.||.+.+..
T Consensus 79 ~~~~id~vi~~ag~~ 93 (263)
T PRK08226 79 KEGRIDILVNNAGVC 93 (263)
T ss_pred HcCCCCEEEECCCcC
Confidence 124689999987754
No 424
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=64.08 E-value=32 Score=25.39 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=20.7
Q ss_pred eEEEEcCC-ccH-HHHHHhhcCCCceEEEEECCh
Q 029554 94 TALCLGGS-LEA-VRRLLRGRGGIEKLIMMDTSY 125 (191)
Q Consensus 94 ~VLDlGcG-~G~-~~~~l~~~~~~~~v~~vD~s~ 125 (191)
+|+=+||| .|. ....|+..+ ..+++.+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~G-vg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSG-VGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CCeEEEEeCCE
Confidence 47889998 354 344555544 56788888875
No 425
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=63.97 E-value=12 Score=26.50 Aligned_cols=90 Identities=16% Similarity=0.135 Sum_probs=43.0
Q ss_pred EEEEcCCc-c-HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEec-CCCCCCCCCCCcceEEeCCcc
Q 029554 95 ALCLGGSL-E-AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVG-DEEFLPLKESSLDLAISCLGL 171 (191)
Q Consensus 95 VLDlGcG~-G-~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~-d~~~l~~~~~~fDlVis~~~l 171 (191)
|+=+|+|. | .++..|.+.+ .+|+.++-++ .++..++..-.......+..+... .....+.....||+|+..-=-
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g--~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa 77 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAG--HDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA 77 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTT--CEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG
T ss_pred CEEECcCHHHHHHHHHHHHCC--CceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc
Confidence 34566652 2 2333444544 8899999888 555544332110001111111111 111111235679999875322
Q ss_pred cCcCChHHHHHHHHhccCC
Q 029554 172 HWTNDLPGAMIQVSIFLLP 190 (191)
Q Consensus 172 ~~~~d~~~~l~~i~r~Lkp 190 (191)
. +....+..+...+.|
T Consensus 78 ~---~~~~~l~~l~~~~~~ 93 (151)
T PF02558_consen 78 Y---QLEQALQSLKPYLDP 93 (151)
T ss_dssp G---GHHHHHHHHCTGEET
T ss_pred c---chHHHHHHHhhccCC
Confidence 2 456677777777665
No 426
>PRK07831 short chain dehydrogenase; Provisional
Probab=63.32 E-value=44 Score=25.78 Aligned_cols=78 Identities=18% Similarity=0.098 Sum_probs=46.6
Q ss_pred CCeEEEEcC-Cc--c-HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----
Q 029554 92 FPTALCLGG-SL--E-AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L----- 157 (191)
Q Consensus 92 ~~~VLDlGc-G~--G-~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~----- 157 (191)
+.++|=.|+ |. | .+...|...+ .+|+.+|.++.-++...+..... ....++.++..|+.... +
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 93 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEG--ARVVISDIHERRLGETADELAAE-LGLGRVEAVVCDVTSEAQVDALIDAAVE 93 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHh-cCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 457888885 33 3 2344555556 77999998887666655544320 01234667778865421 0
Q ss_pred CCCCcceEEeCCccc
Q 029554 158 KESSLDLAISCLGLH 172 (191)
Q Consensus 158 ~~~~fDlVis~~~l~ 172 (191)
.-+..|++|.+.+..
T Consensus 94 ~~g~id~li~~ag~~ 108 (262)
T PRK07831 94 RLGRLDVLVNNAGLG 108 (262)
T ss_pred HcCCCCEEEECCCCC
Confidence 115689999988754
No 427
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=63.15 E-value=16 Score=30.50 Aligned_cols=42 Identities=14% Similarity=0.235 Sum_probs=26.9
Q ss_pred CCCeEEEEcCCc-cHHHHHHhh-cCCCceEEEEECChhHHHHHHHh
Q 029554 91 TFPTALCLGGSL-EAVRRLLRG-RGGIEKLIMMDTSYDMLKLCKDA 134 (191)
Q Consensus 91 ~~~~VLDlGcG~-G~~~~~l~~-~~~~~~v~~vD~s~~~l~~a~~~ 134 (191)
++.+|+=+|+|. |......+. .+ .+|+++|.++.-++.+...
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG--a~V~v~d~~~~~~~~l~~~ 209 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG--ATVTILDINIDRLRQLDAE 209 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHh
Confidence 456799998873 333333333 34 5899999998766655443
No 428
>PRK07774 short chain dehydrogenase; Provisional
Probab=62.90 E-value=63 Score=24.55 Aligned_cols=74 Identities=11% Similarity=0.052 Sum_probs=43.3
Q ss_pred CCeEEEEcCCccHHHHHH----hhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCC----------
Q 029554 92 FPTALCLGGSLEAVRRLL----RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL---------- 157 (191)
Q Consensus 92 ~~~VLDlGcG~G~~~~~l----~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~---------- 157 (191)
+.+||=.|+ +|.++..+ .+.+ .+|++++-++.-.....+.... ...+..++..|+....-
T Consensus 6 ~k~vlItGa-sg~iG~~la~~l~~~g--~~vi~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (250)
T PRK07774 6 DKVAIVTGA-AGGIGQAYAEALAREG--ASVVVADINAEGAERVAKQIVA---DGGTAIAVQVDVSDPDSAKAMADATVS 79 (250)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 456787774 44444444 4455 7899999887655444433321 22245667777654320
Q ss_pred CCCCcceEEeCCcc
Q 029554 158 KESSLDLAISCLGL 171 (191)
Q Consensus 158 ~~~~fDlVis~~~l 171 (191)
..+..|+||.+.+.
T Consensus 80 ~~~~id~vi~~ag~ 93 (250)
T PRK07774 80 AFGGIDYLVNNAAI 93 (250)
T ss_pred HhCCCCEEEECCCC
Confidence 01358999988775
No 429
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=62.20 E-value=67 Score=24.36 Aligned_cols=75 Identities=13% Similarity=0.131 Sum_probs=44.1
Q ss_pred CCeEEEEcCCccHHHH----HHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----
Q 029554 92 FPTALCLGGSLEAVRR----LLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L----- 157 (191)
Q Consensus 92 ~~~VLDlGcG~G~~~~----~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~----- 157 (191)
+.+||-.|++ |.++. .|.+.+ .+|+.++.++.......+.... ...++.++..|+.... +
T Consensus 3 ~~~ilItGas-~~iG~~la~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~ 76 (250)
T TIGR03206 3 DKTAIVTGGG-GGIGGATCRRFAEEG--AKVAVFDLNREAAEKVAADIRA---KGGNAQAFACDITDRDSVDTAVAAAEQ 76 (250)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCC--CEEEEecCCHHHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 4567888864 44443 344545 6899999888665555444322 2334677777765321 0
Q ss_pred CCCCcceEEeCCccc
Q 029554 158 KESSLDLAISCLGLH 172 (191)
Q Consensus 158 ~~~~fDlVis~~~l~ 172 (191)
..+..|+||.+.+..
T Consensus 77 ~~~~~d~vi~~ag~~ 91 (250)
T TIGR03206 77 ALGPVDVLVNNAGWD 91 (250)
T ss_pred HcCCCCEEEECCCCC
Confidence 013579888887643
No 430
>PRK08507 prephenate dehydrogenase; Validated
Probab=62.13 E-value=32 Score=27.20 Aligned_cols=39 Identities=23% Similarity=0.150 Sum_probs=25.3
Q ss_pred eEEEEcCCc--cHHHHHHhhcCCCceEEEEECChhHHHHHH
Q 029554 94 TALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCK 132 (191)
Q Consensus 94 ~VLDlGcG~--G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~ 132 (191)
+|.=||+|. +.++..|.+.+...+|+++|.++.-++.+.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~ 42 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL 42 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH
Confidence 356677764 345555555543347999999988776654
No 431
>PRK06181 short chain dehydrogenase; Provisional
Probab=62.10 E-value=70 Score=24.57 Aligned_cols=73 Identities=18% Similarity=0.238 Sum_probs=42.4
Q ss_pred eEEEEcCCccHHHHH----HhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----CC
Q 029554 94 TALCLGGSLEAVRRL----LRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----KE 159 (191)
Q Consensus 94 ~VLDlGcG~G~~~~~----l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----~~ 159 (191)
+||-.|+ +|.++.. |.+.+ .+|++++.++.-.+...+.... ...++.++..|+.... + .-
T Consensus 3 ~vlVtGa-sg~iG~~la~~l~~~g--~~Vi~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 76 (263)
T PRK06181 3 VVIITGA-SEGIGRALAVRLARAG--AQLVLAARNETRLASLAQELAD---HGGEALVVPTDVSDAEACERLIEAAVARF 76 (263)
T ss_pred EEEEecC-CcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 5676665 3444443 34445 6899999887655544433322 2335667777765421 0 11
Q ss_pred CCcceEEeCCccc
Q 029554 160 SSLDLAISCLGLH 172 (191)
Q Consensus 160 ~~fDlVis~~~l~ 172 (191)
+..|.|+.+.+..
T Consensus 77 ~~id~vi~~ag~~ 89 (263)
T PRK06181 77 GGIDILVNNAGIT 89 (263)
T ss_pred CCCCEEEECCCcc
Confidence 3689999887654
No 432
>PRK05993 short chain dehydrogenase; Provisional
Probab=61.88 E-value=49 Score=25.93 Aligned_cols=70 Identities=13% Similarity=-0.033 Sum_probs=41.5
Q ss_pred CCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C------
Q 029554 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L------ 157 (191)
Q Consensus 92 ~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~------ 157 (191)
+.+||-.|++.| .+...|.+.+ .+|++++-++..++...+. .+.++..|+.... +
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G--~~Vi~~~r~~~~~~~l~~~---------~~~~~~~Dl~d~~~~~~~~~~~~~~ 72 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDG--WRVFATCRKEEDVAALEAE---------GLEAFQLDYAEPESIAALVAQVLEL 72 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHC---------CceEEEccCCCHHHHHHHHHHHHHH
Confidence 346888887443 2233444555 7899999887765544321 2455666755321 0
Q ss_pred CCCCcceEEeCCccc
Q 029554 158 KESSLDLAISCLGLH 172 (191)
Q Consensus 158 ~~~~fDlVis~~~l~ 172 (191)
..+..|+|+.+.+..
T Consensus 73 ~~g~id~li~~Ag~~ 87 (277)
T PRK05993 73 SGGRLDALFNNGAYG 87 (277)
T ss_pred cCCCccEEEECCCcC
Confidence 124689999987653
No 433
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=61.35 E-value=91 Score=26.42 Aligned_cols=67 Identities=13% Similarity=0.150 Sum_probs=42.3
Q ss_pred CCCeEEEEcCCccHHHHHH----hhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCC----CCCCCCc
Q 029554 91 TFPTALCLGGSLEAVRRLL----RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL----PLKESSL 162 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~~l----~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l----~~~~~~f 162 (191)
...+|+=+|+| ..+..+ .+.+ .+|+.+|.+++.++..++... .+.++.+|.... ...-..+
T Consensus 230 ~~~~iiIiG~G--~~g~~l~~~L~~~~--~~v~vid~~~~~~~~~~~~~~-------~~~~i~gd~~~~~~L~~~~~~~a 298 (453)
T PRK09496 230 PVKRVMIVGGG--NIGYYLAKLLEKEG--YSVKLIERDPERAEELAEELP-------NTLVLHGDGTDQELLEEEGIDEA 298 (453)
T ss_pred CCCEEEEECCC--HHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHCC-------CCeEEECCCCCHHHHHhcCCccC
Confidence 45678888885 444444 3434 789999999998877765431 255677775422 1123468
Q ss_pred ceEEeC
Q 029554 163 DLAISC 168 (191)
Q Consensus 163 DlVis~ 168 (191)
|.|++.
T Consensus 299 ~~vi~~ 304 (453)
T PRK09496 299 DAFIAL 304 (453)
T ss_pred CEEEEC
Confidence 888764
No 434
>PRK07074 short chain dehydrogenase; Provisional
Probab=61.27 E-value=63 Score=24.76 Aligned_cols=73 Identities=22% Similarity=0.242 Sum_probs=41.8
Q ss_pred CeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----CC-----C
Q 029554 93 PTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK-----E 159 (191)
Q Consensus 93 ~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~~-----~ 159 (191)
.++|=.|++.| .+...|.+.+ .+|++++.++.-.+...+... ..++.++..|+.... +. .
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g--~~v~~~~r~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 75 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAG--DRVLALDIDAAALAAFADALG-----DARFVPVACDLTDAASLAAALANAAAER 75 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhc-----CCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 35777776543 2233344445 789999988765544433321 123666777765321 11 1
Q ss_pred CCcceEEeCCccc
Q 029554 160 SSLDLAISCLGLH 172 (191)
Q Consensus 160 ~~fDlVis~~~l~ 172 (191)
+.+|.|+.+.+..
T Consensus 76 ~~~d~vi~~ag~~ 88 (257)
T PRK07074 76 GPVDVLVANAGAA 88 (257)
T ss_pred CCCCEEEECCCCC
Confidence 3589999887653
No 435
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=61.07 E-value=61 Score=25.01 Aligned_cols=77 Identities=12% Similarity=-0.020 Sum_probs=43.1
Q ss_pred CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEEC-ChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------
Q 029554 91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDT-SYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP---------- 156 (191)
Q Consensus 91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~-s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~---------- 156 (191)
.+.+||=.|++.| .+...|.+.+ .+|+.+.. +++.++...+.... ....++.++..|+....
T Consensus 7 ~~k~vlItGas~gIG~~ia~~l~~~G--~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~ 82 (260)
T PRK08416 7 KGKTLVISGGTRGIGKAIVYEFAQSG--VNIAFTYNSNVEEANKIAEDLEQ--KYGIKAKAYPLNILEPETYKELFKKID 82 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHHHH--hcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 3457888887655 3344555656 77887753 44444433333221 12235677788866421
Q ss_pred CCCCCcceEEeCCcc
Q 029554 157 LKESSLDLAISCLGL 171 (191)
Q Consensus 157 ~~~~~fDlVis~~~l 171 (191)
-.-+.+|+++.|.++
T Consensus 83 ~~~g~id~lv~nAg~ 97 (260)
T PRK08416 83 EDFDRVDFFISNAII 97 (260)
T ss_pred HhcCCccEEEECccc
Confidence 012568999988754
No 436
>PRK07825 short chain dehydrogenase; Provisional
Probab=60.73 E-value=54 Score=25.47 Aligned_cols=72 Identities=15% Similarity=0.047 Sum_probs=42.9
Q ss_pred CCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------CC
Q 029554 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------LK 158 (191)
Q Consensus 92 ~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~~ 158 (191)
+.+||=.|++.| .+...|.+.+ .+|+.++.++.-++...+... ++.++..|+.... -.
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~~~~-------~~~~~~~D~~~~~~~~~~~~~~~~~ 75 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALG--ARVAIGDLDEALAKETAAELG-------LVVGGPLDVTDPASFAAFLDAVEAD 75 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHhc-------cceEEEccCCCHHHHHHHHHHHHHH
Confidence 456888887544 2233445555 789999988876655433221 2556667765321 01
Q ss_pred CCCcceEEeCCccc
Q 029554 159 ESSLDLAISCLGLH 172 (191)
Q Consensus 159 ~~~fDlVis~~~l~ 172 (191)
.+..|++|.+.+.-
T Consensus 76 ~~~id~li~~ag~~ 89 (273)
T PRK07825 76 LGPIDVLVNNAGVM 89 (273)
T ss_pred cCCCCEEEECCCcC
Confidence 15689999987653
No 437
>PRK08324 short chain dehydrogenase; Validated
Probab=60.51 E-value=80 Score=28.70 Aligned_cols=77 Identities=16% Similarity=0.104 Sum_probs=46.4
Q ss_pred CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----
Q 029554 91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L----- 157 (191)
Q Consensus 91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~----- 157 (191)
.+.+||-.|++.| .+...|.+.+ .+|+++|.++.-++.+.+.... . ..+.++..|+.... +
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~G--a~Vvl~~r~~~~~~~~~~~l~~---~-~~v~~v~~Dvtd~~~v~~~~~~~~~ 494 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEG--ACVVLADLDEEAAEAAAAELGG---P-DRALGVACDVTDEAAVQAAFEEAAL 494 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCc--CEEEEEeCCHHHHHHHHHHHhc---c-CcEEEEEecCCCHHHHHHHHHHHHH
Confidence 3467888886433 2233444555 6899999998766655544321 1 34667777765321 1
Q ss_pred CCCCcceEEeCCcccC
Q 029554 158 KESSLDLAISCLGLHW 173 (191)
Q Consensus 158 ~~~~fDlVis~~~l~~ 173 (191)
..+.+|+||.+.+...
T Consensus 495 ~~g~iDvvI~~AG~~~ 510 (681)
T PRK08324 495 AFGGVDIVVSNAGIAI 510 (681)
T ss_pred HcCCCCEEEECCCCCC
Confidence 1246899999887543
No 438
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=60.47 E-value=62 Score=25.76 Aligned_cols=88 Identities=14% Similarity=0.116 Sum_probs=43.0
Q ss_pred eEEEEcCCcc--HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeE---ecCCCCCCCCCCCcceEEeC
Q 029554 94 TALCLGGSLE--AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFV---VGDEEFLPLKESSLDLAISC 168 (191)
Q Consensus 94 ~VLDlGcG~G--~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~---~~d~~~l~~~~~~fDlVis~ 168 (191)
+|+=+|+|.- .++..|.+.+ .+|+.++. +..++..++..-..........+. ..+.+. ....+|+|+..
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g--~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~vila 75 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAG--RDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEE---LTGPFDLVILA 75 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCC--CceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHH---ccCCCCEEEEE
Confidence 4677787743 3455566655 67999998 555555443210000000000000 111111 12568988765
Q ss_pred CcccCcCChHHHHHHHHhccCC
Q 029554 169 LGLHWTNDLPGAMIQVSIFLLP 190 (191)
Q Consensus 169 ~~l~~~~d~~~~l~~i~r~Lkp 190 (191)
---+ +...++.++...+.+
T Consensus 76 vk~~---~~~~~~~~l~~~~~~ 94 (305)
T PRK12921 76 VKAY---QLDAAIPDLKPLVGE 94 (305)
T ss_pred eccc---CHHHHHHHHHhhcCC
Confidence 3322 456677777666654
No 439
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=60.37 E-value=37 Score=31.13 Aligned_cols=91 Identities=14% Similarity=0.109 Sum_probs=54.1
Q ss_pred CeEEEEcCCc--cHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhc------cCCC---------CceeeEecCCCCC
Q 029554 93 PTALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA------HNDN---------IETCFVVGDEEFL 155 (191)
Q Consensus 93 ~~VLDlGcG~--G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~------~~~~---------~~~~~~~~d~~~l 155 (191)
.+|.-||+|+ ..++..++..+ .+|+..|.+++.++.+.++.... .... .++.+ ..|.+.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G--~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~ 390 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKG--VPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP-TLDYAGF 390 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE-eCCHHHh
Confidence 4788899986 34444555656 89999999999998876654320 0000 01111 1222222
Q ss_pred CCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 156 PLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 156 ~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
...|+||=. +..-++-...++.++-++++|+
T Consensus 391 ----~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~ 421 (715)
T PRK11730 391 ----ERVDVVVEA-VVENPKVKAAVLAEVEQKVRED 421 (715)
T ss_pred ----cCCCEEEec-ccCcHHHHHHHHHHHHhhCCCC
Confidence 346777643 3333334557888888888774
No 440
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=60.31 E-value=74 Score=24.22 Aligned_cols=76 Identities=16% Similarity=0.156 Sum_probs=45.4
Q ss_pred CeEEEEcCCccHHHHHHhh----cCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----C
Q 029554 93 PTALCLGGSLEAVRRLLRG----RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----K 158 (191)
Q Consensus 93 ~~VLDlGcG~G~~~~~l~~----~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----~ 158 (191)
.+||=.|+ +|.++..+++ .+ .+|++++.++.-.+...+.... ...++.++..|+.... + .
T Consensus 5 ~~vlItG~-sg~iG~~la~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (258)
T PRK12429 5 KVALVTGA-ASGIGLEIALALAKEG--AKVVIADLNDEAAAAAAEALQK---AGGKAIGVAMDVTDEEAINAGIDYAVET 78 (258)
T ss_pred CEEEEECC-CchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 45776664 5555555543 44 6899999988766555444332 2345667777765321 0 1
Q ss_pred CCCcceEEeCCcccCc
Q 029554 159 ESSLDLAISCLGLHWT 174 (191)
Q Consensus 159 ~~~fDlVis~~~l~~~ 174 (191)
.+.+|+||.+.+..+.
T Consensus 79 ~~~~d~vi~~a~~~~~ 94 (258)
T PRK12429 79 FGGVDILVNNAGIQHV 94 (258)
T ss_pred cCCCCEEEECCCCCCC
Confidence 1368999988765433
No 441
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=60.00 E-value=85 Score=24.86 Aligned_cols=89 Identities=17% Similarity=0.144 Sum_probs=45.1
Q ss_pred eEEEEcCCc--cHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcc
Q 029554 94 TALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGL 171 (191)
Q Consensus 94 ~VLDlGcG~--G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l 171 (191)
+|+=+|+|. +.++..|.+.+ .+|+.++.++..++..++.... -..........-..... +...+|+|+..---
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g--~~V~~~~r~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~-~~~~~d~vila~k~ 76 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAG--HDVTLVARRGAHLDALNENGLR--LEDGEITVPVLAADDPA-ELGPQDLVILAVKA 76 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCC--CeEEEEECChHHHHHHHHcCCc--ccCCceeecccCCCChh-HcCCCCEEEEeccc
Confidence 477788763 23445555555 7899999877666555432110 00000000000011111 11568998875432
Q ss_pred cCcCChHHHHHHHHhccCC
Q 029554 172 HWTNDLPGAMIQVSIFLLP 190 (191)
Q Consensus 172 ~~~~d~~~~l~~i~r~Lkp 190 (191)
. +...++.++...+.+
T Consensus 77 ~---~~~~~~~~l~~~l~~ 92 (304)
T PRK06522 77 Y---QLPAALPSLAPLLGP 92 (304)
T ss_pred c---cHHHHHHHHhhhcCC
Confidence 2 456677777766654
No 442
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=59.47 E-value=20 Score=32.01 Aligned_cols=63 Identities=10% Similarity=0.181 Sum_probs=39.7
Q ss_pred CeEEEEcCCccHHHHHHh----hcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----CCCCCcce
Q 029554 93 PTALCLGGSLEAVRRLLR----GRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----LKESSLDL 164 (191)
Q Consensus 93 ~~VLDlGcG~G~~~~~l~----~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----~~~~~fDl 164 (191)
.+|+=+|+ |..++.+. +.+ .+++.+|.+++.++.+++.. ...+.+|..+.. ..-...|+
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~~g--~~vvvID~d~~~v~~~~~~g---------~~v~~GDat~~~~L~~agi~~A~~ 467 (601)
T PRK03659 401 PQVIIVGF--GRFGQVIGRLLMANK--MRITVLERDISAVNLMRKYG---------YKVYYGDATQLELLRAAGAEKAEA 467 (601)
T ss_pred CCEEEecC--chHHHHHHHHHHhCC--CCEEEEECCHHHHHHHHhCC---------CeEEEeeCCCHHHHHhcCCccCCE
Confidence 35555555 55555544 334 68999999999888875421 566778865421 12245788
Q ss_pred EEeC
Q 029554 165 AISC 168 (191)
Q Consensus 165 Vis~ 168 (191)
|++.
T Consensus 468 vv~~ 471 (601)
T PRK03659 468 IVIT 471 (601)
T ss_pred EEEE
Confidence 8765
No 443
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=58.91 E-value=30 Score=28.93 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=22.7
Q ss_pred CCCeEEEEcCC-ccH-HHHHHhhcCCCceEEEEECC
Q 029554 91 TFPTALCLGGS-LEA-VRRLLRGRGGIEKLIMMDTS 124 (191)
Q Consensus 91 ~~~~VLDlGcG-~G~-~~~~l~~~~~~~~v~~vD~s 124 (191)
...+||=+||| .|. ....|+..+ ..+++.+|.+
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~G-vg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAG-VGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCC
Confidence 45579999998 344 344555544 5789999987
No 444
>PRK08303 short chain dehydrogenase; Provisional
Probab=58.77 E-value=61 Score=26.08 Aligned_cols=73 Identities=14% Similarity=0.101 Sum_probs=41.8
Q ss_pred CCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECCh----------hHHHHHHHhhhhccCCCCceeeEecCCCCCC--
Q 029554 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSY----------DMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-- 156 (191)
Q Consensus 92 ~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~----------~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-- 156 (191)
+.++|-.|++.| .....|++.+ .+|+.++.+. +-++...+.... ...++.++..|+....
T Consensus 8 ~k~~lITGgs~GIG~aia~~la~~G--~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~Dv~~~~~v 82 (305)
T PRK08303 8 GKVALVAGATRGAGRGIAVELGAAG--ATVYVTGRSTRARRSEYDRPETIEETAELVTA---AGGRGIAVQVDHLVPEQV 82 (305)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEecccccccccccccchHHHHHHHHHh---cCCceEEEEcCCCCHHHH
Confidence 467888887665 3344455556 7899888763 223333333322 2233556777765421
Q ss_pred --------CCCCCcceEEeCC
Q 029554 157 --------LKESSLDLAISCL 169 (191)
Q Consensus 157 --------~~~~~fDlVis~~ 169 (191)
-.-+..|++|.|.
T Consensus 83 ~~~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 83 RALVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHHHcCCccEEEECC
Confidence 0115789999886
No 445
>PRK08862 short chain dehydrogenase; Provisional
Probab=58.54 E-value=68 Score=24.47 Aligned_cols=74 Identities=11% Similarity=-0.019 Sum_probs=46.6
Q ss_pred CCeEEEEcCCccH---HHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C----C-
Q 029554 92 FPTALCLGGSLEA---VRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L----K- 158 (191)
Q Consensus 92 ~~~VLDlGcG~G~---~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~----~- 158 (191)
+..+|=.|++.|. +...|++.+ .+|+.++.++..++...+.... ...++..+..|+.... + .
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G--~~V~~~~r~~~~l~~~~~~i~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLG--ATLILCDQDQSALKDTYEQCSA---LTDNVYSFQLKDFSQESIRHLFDAIEQQ 79 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHHHHh---cCCCeEEEEccCCCHHHHHHHHHHHHHH
Confidence 4578888887763 455556666 7899999988877766555432 1223455555644321 0 1
Q ss_pred CC-CcceEEeCCc
Q 029554 159 ES-SLDLAISCLG 170 (191)
Q Consensus 159 ~~-~fDlVis~~~ 170 (191)
-+ ..|+++.|.+
T Consensus 80 ~g~~iD~li~nag 92 (227)
T PRK08862 80 FNRAPDVLVNNWT 92 (227)
T ss_pred hCCCCCEEEECCc
Confidence 13 7999999874
No 446
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=58.35 E-value=19 Score=28.44 Aligned_cols=37 Identities=14% Similarity=0.067 Sum_probs=19.8
Q ss_pred cCCCeEEEEcCCccHHHHHHh---hc-C-CCceEEEEECChh
Q 029554 90 KTFPTALCLGGSLEAVRRLLR---GR-G-GIEKLIMMDTSYD 126 (191)
Q Consensus 90 ~~~~~VLDlGcG~G~~~~~l~---~~-~-~~~~v~~vD~s~~ 126 (191)
.-++.|+|.||-.|..+..+. +. + +..+++++|.=++
T Consensus 73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG 114 (248)
T PF05711_consen 73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEG 114 (248)
T ss_dssp TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSS
T ss_pred CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCC
Confidence 346689999999887665443 22 1 3467888886443
No 447
>PRK06914 short chain dehydrogenase; Provisional
Probab=58.34 E-value=64 Score=25.10 Aligned_cols=75 Identities=15% Similarity=0.036 Sum_probs=42.6
Q ss_pred CeEEEEcCCccHHHH----HHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----C-----CC
Q 029554 93 PTALCLGGSLEAVRR----LLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----L-----KE 159 (191)
Q Consensus 93 ~~VLDlGcG~G~~~~----~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----~-----~~ 159 (191)
.+||-.|++. .++. .|.+.+ .+|++++-++.-++...+..... ....++.++..|+.... + .-
T Consensus 4 k~~lItGasg-~iG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 79 (280)
T PRK06914 4 KIAIVTGASS-GFGLLTTLELAKKG--YLVIATMRNPEKQENLLSQATQL-NLQQNIKVQQLDVTDQNSIHNFQLVLKEI 79 (280)
T ss_pred CEEEEECCCc-hHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHHHHhc-CCCCceeEEecCCCCHHHHHHHHHHHHhc
Confidence 4577778543 3333 345555 78999988876555443332210 11235777777765421 0 11
Q ss_pred CCcceEEeCCcc
Q 029554 160 SSLDLAISCLGL 171 (191)
Q Consensus 160 ~~fDlVis~~~l 171 (191)
+..|.|+.+.+.
T Consensus 80 ~~id~vv~~ag~ 91 (280)
T PRK06914 80 GRIDLLVNNAGY 91 (280)
T ss_pred CCeeEEEECCcc
Confidence 467999887654
No 448
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=58.20 E-value=76 Score=25.81 Aligned_cols=91 Identities=16% Similarity=0.094 Sum_probs=47.2
Q ss_pred eEEEEcCC--ccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCCcc
Q 029554 94 TALCLGGS--LEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGL 171 (191)
Q Consensus 94 ~VLDlGcG--~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~~l 171 (191)
+|+=+|+| .|.++..|.+.+ ..|+.+--++. ++..++..-.......+.... ......+...+.+|+|+..-=-
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g--~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~-~~~~~~~~~~~~~Dlviv~vKa 77 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAG--HDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTP-VVAATDAEALGPADLVIVTVKA 77 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCC--CeEEEEecHHH-HHHHHhCCeEEecCCCccccc-cccccChhhcCCCCEEEEEecc
Confidence 57778887 456677777766 56666666655 555554321000000000000 0011111223479999874322
Q ss_pred cCcCChHHHHHHHHhccCCC
Q 029554 172 HWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 172 ~~~~d~~~~l~~i~r~Lkpg 191 (191)
+ +...++..+...++|+
T Consensus 78 ~---q~~~al~~l~~~~~~~ 94 (307)
T COG1893 78 Y---QLEEALPSLAPLLGPN 94 (307)
T ss_pred c---cHHHHHHHhhhcCCCC
Confidence 2 5677788887777663
No 449
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=57.63 E-value=63 Score=25.96 Aligned_cols=44 Identities=20% Similarity=0.227 Sum_probs=28.0
Q ss_pred cCCCeEEEEcCC-ccHHHHHHhhcCCCceEEEEECChhHHHHHHH
Q 029554 90 KTFPTALCLGGS-LEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (191)
Q Consensus 90 ~~~~~VLDlGcG-~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~ 133 (191)
.++.+||-.|+| .|..+..+++......+++++.++...+.+++
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~ 210 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE 210 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 356788887764 35555555555433478888888776666543
No 450
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=57.42 E-value=59 Score=24.71 Aligned_cols=75 Identities=12% Similarity=0.057 Sum_probs=42.5
Q ss_pred CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554 91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L 157 (191)
Q Consensus 91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~ 157 (191)
.+.+||=.|++.| .+...|.+.+ .+|++++-++. ....+.... ...++.++..|+.... -
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G--~~vi~~~r~~~--~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAG--ADIVGAGRSEP--SETQQQVEA---LGRRFLSLTADLSDIEAIKALVDSAVE 76 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--CEEEEEcCchH--HHHHHHHHh---cCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 3567888887554 2344445555 78999987652 222222221 1234667777765421 0
Q ss_pred CCCCcceEEeCCccc
Q 029554 158 KESSLDLAISCLGLH 172 (191)
Q Consensus 158 ~~~~fDlVis~~~l~ 172 (191)
..+..|.||.+.+..
T Consensus 77 ~~~~~d~li~~ag~~ 91 (248)
T TIGR01832 77 EFGHIDILVNNAGII 91 (248)
T ss_pred HcCCCCEEEECCCCC
Confidence 114689999887654
No 451
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=56.68 E-value=61 Score=25.00 Aligned_cols=66 Identities=18% Similarity=0.326 Sum_probs=40.4
Q ss_pred eEEEEcCCc--cHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCC---C-CCCCCCcceEEe
Q 029554 94 TALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF---L-PLKESSLDLAIS 167 (191)
Q Consensus 94 ~VLDlGcG~--G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~---l-~~~~~~fDlVis 167 (191)
+++=+|||. +.++..|.+.+ ..|+.+|.++.-++...+. ...+..+++|... | ...-..+|++++
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g--~~Vv~Id~d~~~~~~~~~~-------~~~~~~v~gd~t~~~~L~~agi~~aD~vva 72 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEG--HNVVLIDRDEERVEEFLAD-------ELDTHVVIGDATDEDVLEEAGIDDADAVVA 72 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCC--CceEEEEcCHHHHHHHhhh-------hcceEEEEecCCCHHHHHhcCCCcCCEEEE
Confidence 466778763 23455555555 7999999999887774321 1225667776443 1 122346888886
Q ss_pred C
Q 029554 168 C 168 (191)
Q Consensus 168 ~ 168 (191)
.
T Consensus 73 ~ 73 (225)
T COG0569 73 A 73 (225)
T ss_pred e
Confidence 4
No 452
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=56.45 E-value=76 Score=24.33 Aligned_cols=74 Identities=15% Similarity=0.132 Sum_probs=42.1
Q ss_pred CCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----C
Q 029554 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----K 158 (191)
Q Consensus 92 ~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----~ 158 (191)
+.++|=.|++.| .+...|.+.+ .+|+.+|.++... ...+.... ...++.++..|+.... + .
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~G--~~v~~~~r~~~~~-~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAEG--ARVVLVDRSELVH-EVAAELRA---AGGEALALTADLETYAGAQAAMAAAVEA 81 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCC--CEEEEEeCchHHH-HHHHHHHh---cCCeEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 456888886544 2344455556 7899999876432 22222221 2234566677765421 0 1
Q ss_pred CCCcceEEeCCcc
Q 029554 159 ESSLDLAISCLGL 171 (191)
Q Consensus 159 ~~~fDlVis~~~l 171 (191)
.+.+|.+|.+.+.
T Consensus 82 ~~~id~lv~nAg~ 94 (260)
T PRK12823 82 FGRIDVLINNVGG 94 (260)
T ss_pred cCCCeEEEECCcc
Confidence 2468999988753
No 453
>PRK07832 short chain dehydrogenase; Provisional
Probab=56.06 E-value=79 Score=24.57 Aligned_cols=75 Identities=16% Similarity=0.145 Sum_probs=39.8
Q ss_pred eEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------CCCC
Q 029554 94 TALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------LKES 160 (191)
Q Consensus 94 ~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~~~~ 160 (191)
++|=.|++.| .+...+++.+ .+|+.++.++..++...+.... .......+...|+.... -..+
T Consensus 2 ~vlItGas~giG~~la~~la~~G--~~vv~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQG--AELFLTDRDADGLAQTVADARA--LGGTVPEHRALDISDYDAVAAFAADIHAAHG 77 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh--cCCCcceEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 3566665433 2233445555 7799999887765555444322 11112344556654311 0124
Q ss_pred CcceEEeCCccc
Q 029554 161 SLDLAISCLGLH 172 (191)
Q Consensus 161 ~fDlVis~~~l~ 172 (191)
..|.||.+.+..
T Consensus 78 ~id~lv~~ag~~ 89 (272)
T PRK07832 78 SMDVVMNIAGIS 89 (272)
T ss_pred CCCEEEECCCCC
Confidence 589999887653
No 454
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=55.43 E-value=1.2e+02 Score=24.94 Aligned_cols=80 Identities=23% Similarity=0.174 Sum_probs=53.9
Q ss_pred CCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------CC
Q 029554 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------LK 158 (191)
Q Consensus 92 ~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~~ 158 (191)
+..++=.|+-.| ...+.|+.++ .+|+...-+..-.+.+.+.... .....++.+++.|+..+. -.
T Consensus 35 ~~~~vVTGansGIG~eta~~La~~G--a~Vv~~~R~~~~~~~~~~~i~~-~~~~~~i~~~~lDLssl~SV~~fa~~~~~~ 111 (314)
T KOG1208|consen 35 GKVALVTGATSGIGFETARELALRG--AHVVLACRNEERGEEAKEQIQK-GKANQKIRVIQLDLSSLKSVRKFAEEFKKK 111 (314)
T ss_pred CcEEEEECCCCchHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHHHHh-cCCCCceEEEECCCCCHHHHHHHHHHHHhc
Confidence 345666665444 3355667777 8999999898766666666543 233456788889977542 23
Q ss_pred CCCcceEEeCCcccCc
Q 029554 159 ESSLDLAISCLGLHWT 174 (191)
Q Consensus 159 ~~~fDlVis~~~l~~~ 174 (191)
..+.|+.|.|.++-..
T Consensus 112 ~~~ldvLInNAGV~~~ 127 (314)
T KOG1208|consen 112 EGPLDVLINNAGVMAP 127 (314)
T ss_pred CCCccEEEeCcccccC
Confidence 5679999999876654
No 455
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=54.83 E-value=29 Score=30.63 Aligned_cols=62 Identities=19% Similarity=0.187 Sum_probs=38.8
Q ss_pred CeEEEEcCCccHHHHHHh----hcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----CCCCCcce
Q 029554 93 PTALCLGGSLEAVRRLLR----GRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----LKESSLDL 164 (191)
Q Consensus 93 ~~VLDlGcG~G~~~~~l~----~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----~~~~~fDl 164 (191)
.+|+=+||| ..++.+. +.+ .+++.+|.+++.++.+++. ....+.+|..+.. ..-+.+|.
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g--~~vvvId~d~~~~~~~~~~---------g~~~i~GD~~~~~~L~~a~i~~a~~ 484 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAG--IPLVVIETSRTRVDELRER---------GIRAVLGNAANEEIMQLAHLDCARW 484 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCC--CCEEEEECCHHHHHHHHHC---------CCeEEEcCCCCHHHHHhcCccccCE
Confidence 456666665 4544444 444 7899999999988887642 1566778765421 12246786
Q ss_pred EEe
Q 029554 165 AIS 167 (191)
Q Consensus 165 Vis 167 (191)
|++
T Consensus 485 viv 487 (558)
T PRK10669 485 LLL 487 (558)
T ss_pred EEE
Confidence 654
No 456
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=54.56 E-value=1.1e+02 Score=24.40 Aligned_cols=43 Identities=14% Similarity=0.017 Sum_probs=29.7
Q ss_pred cCCCeEEEEcCC-ccHHHHHHhhcCCCceEEEEECChhHHHHHHH
Q 029554 90 KTFPTALCLGGS-LEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (191)
Q Consensus 90 ~~~~~VLDlGcG-~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~ 133 (191)
.++.+||-+|+| .|..+..+++.. ..++++++.++...+.+++
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~ 204 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARK 204 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH
Confidence 456788888886 555555555443 2679999999988777643
No 457
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=54.52 E-value=40 Score=25.01 Aligned_cols=89 Identities=15% Similarity=0.137 Sum_probs=47.7
Q ss_pred EEEEcCCc-c-HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhh-c------cCCC--------CceeeEecCCCCCCC
Q 029554 95 ALCLGGSL-E-AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD-A------HNDN--------IETCFVVGDEEFLPL 157 (191)
Q Consensus 95 VLDlGcG~-G-~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~-~------~~~~--------~~~~~~~~d~~~l~~ 157 (191)
|-=+|+|+ | .++..++..+ .+|+.+|.++..++.+++++.. + +... .++. ...|++.+-
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G--~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~~- 77 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAG--YEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEAV- 77 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTT--SEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGGC-
T ss_pred EEEEcCCHHHHHHHHHHHhCC--CcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHHh-
Confidence 55677764 2 2333444555 8999999999999888776543 0 0000 1112 224444331
Q ss_pred CCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 158 KESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 158 ~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
..|+|+=+- ....+-...+++++.+++.|+
T Consensus 78 ---~adlViEai-~E~l~~K~~~~~~l~~~~~~~ 107 (180)
T PF02737_consen 78 ---DADLVIEAI-PEDLELKQELFAELDEICPPD 107 (180)
T ss_dssp ---TESEEEE-S--SSHHHHHHHHHHHHCCS-TT
T ss_pred ---hhheehhhc-cccHHHHHHHHHHHHHHhCCC
Confidence 478776432 222223457888888887764
No 458
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=54.47 E-value=1e+02 Score=24.80 Aligned_cols=41 Identities=15% Similarity=0.132 Sum_probs=28.7
Q ss_pred CeEEEEcC--CccHHHHHHhhcCCCceEEEEECChhHHHHHHH
Q 029554 93 PTALCLGG--SLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (191)
Q Consensus 93 ~~VLDlGc--G~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~ 133 (191)
.+||=.|+ |.|..+..+++.....++++++.+++-.+.+++
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~ 198 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKS 198 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 68888885 456666666665422379999999887776655
No 459
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=54.43 E-value=72 Score=27.03 Aligned_cols=70 Identities=17% Similarity=0.100 Sum_probs=44.1
Q ss_pred CeEEEEcCCc-cHHHH-HHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----CCCCCcceEE
Q 029554 93 PTALCLGGSL-EAVRR-LLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----LKESSLDLAI 166 (191)
Q Consensus 93 ~~VLDlGcG~-G~~~~-~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----~~~~~fDlVi 166 (191)
.+||=||||. |.... .|++.+ ..+|+..|-|..-.+.+.... ..+++..+.|+...+ .- ..+|+||
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~-d~~V~iAdRs~~~~~~i~~~~------~~~v~~~~vD~~d~~al~~li-~~~d~VI 73 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNG-DGEVTIADRSKEKCARIAELI------GGKVEALQVDAADVDALVALI-KDFDLVI 73 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHhhc------cccceeEEecccChHHHHHHH-hcCCEEE
Confidence 4689999953 22222 334433 379999999987777665432 225788888877543 11 3459998
Q ss_pred eCCc
Q 029554 167 SCLG 170 (191)
Q Consensus 167 s~~~ 170 (191)
+..-
T Consensus 74 n~~p 77 (389)
T COG1748 74 NAAP 77 (389)
T ss_pred EeCC
Confidence 7654
No 460
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=54.00 E-value=56 Score=30.01 Aligned_cols=91 Identities=12% Similarity=0.111 Sum_probs=54.3
Q ss_pred CeEEEEcCCc--cHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhc------cCCC---------CceeeEecCCCCC
Q 029554 93 PTALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA------HNDN---------IETCFVVGDEEFL 155 (191)
Q Consensus 93 ~~VLDlGcG~--G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~------~~~~---------~~~~~~~~d~~~l 155 (191)
.+|--||+|+ +.++..++..+ .+|+.+|.+++.++.+.++.... .... .++.. ..|.+.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G--~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~ 390 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKG--TPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITP-TLSYAGF 390 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE-eCCHHHh
Confidence 3688889884 23444455556 89999999999998877655320 0000 01111 1122211
Q ss_pred CCCCCCcceEEeCCcccCcCChHHHHHHHHhccCCC
Q 029554 156 PLKESSLDLAISCLGLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 156 ~~~~~~fDlVis~~~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
...|+||=. +...++-...++.++-++++|+
T Consensus 391 ----~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~ 421 (714)
T TIGR02437 391 ----DNVDIVVEA-VVENPKVKAAVLAEVEQHVRED 421 (714)
T ss_pred ----cCCCEEEEc-CcccHHHHHHHHHHHHhhCCCC
Confidence 357888743 4444444567899999888875
No 461
>PRK06057 short chain dehydrogenase; Provisional
Probab=53.95 E-value=74 Score=24.38 Aligned_cols=70 Identities=21% Similarity=0.210 Sum_probs=39.9
Q ss_pred CCCeEEEEcCCccHHHH----HHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C----
Q 029554 91 TFPTALCLGGSLEAVRR----LLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L---- 157 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~----~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~---- 157 (191)
.+.+||-+|++.| ++. .+.+.+ .+|++++.++.-++...+... ..++..|+.... +
T Consensus 6 ~~~~vlItGasgg-IG~~~a~~l~~~G--~~v~~~~r~~~~~~~~~~~~~--------~~~~~~D~~~~~~~~~~~~~~~ 74 (255)
T PRK06057 6 AGRVAVITGGGSG-IGLATARRLAAEG--ATVVVGDIDPEAGKAAADEVG--------GLFVPTDVTDEDAVNALFDTAA 74 (255)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHcC--------CcEEEeeCCCHHHHHHHHHHHH
Confidence 3567898887543 333 344555 789999988765544433221 134555544321 0
Q ss_pred -CCCCcceEEeCCcc
Q 029554 158 -KESSLDLAISCLGL 171 (191)
Q Consensus 158 -~~~~fDlVis~~~l 171 (191)
..+.+|.|+.+.+.
T Consensus 75 ~~~~~id~vi~~ag~ 89 (255)
T PRK06057 75 ETYGSVDIAFNNAGI 89 (255)
T ss_pred HHcCCCCEEEECCCc
Confidence 11468998887654
No 462
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=53.72 E-value=81 Score=25.75 Aligned_cols=54 Identities=15% Similarity=0.107 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHH
Q 029554 76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLC 131 (191)
Q Consensus 76 ~~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a 131 (191)
++++.+..++.....+.--++-..-|.|.....++..+ ..|+++|.+-++.+.-
T Consensus 235 ~I~~~Vk~rl~~~~~~~vPmi~fakG~g~~Le~l~~tG--~DVvgLDWTvdp~ear 288 (359)
T KOG2872|consen 235 QIAEAVKKRLPELGLAPVPMILFAKGSGGALEELAQTG--YDVVGLDWTVDPAEAR 288 (359)
T ss_pred HHHHHHHHhhhhhcCCCCceEEEEcCcchHHHHHHhcC--CcEEeecccccHHHHH
Confidence 34555566665432222235667789999999999988 8999999998887544
No 463
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=53.59 E-value=81 Score=23.93 Aligned_cols=72 Identities=17% Similarity=0.222 Sum_probs=42.3
Q ss_pred eEEEEcCCccHHHHHHh----hcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------CCC
Q 029554 94 TALCLGGSLEAVRRLLR----GRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------LKE 159 (191)
Q Consensus 94 ~VLDlGcG~G~~~~~l~----~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~~~ 159 (191)
+||=.| |+|.++..+. +.+ .+|++++.++...+........ ...++.++.+|+.... -..
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 76 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAG--ANVVVNDLGEAGAEAAAKVATD---AGGSVIYLVADVTKEDEIADMIAAAAAEF 76 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh---cCCceEEEECCCCCHHHHHHHHHHHHHhc
Confidence 466666 4555555554 344 6899999887665555443321 2234677777765421 012
Q ss_pred CCcceEEeCCcc
Q 029554 160 SSLDLAISCLGL 171 (191)
Q Consensus 160 ~~fDlVis~~~l 171 (191)
+..|.|+.+.+.
T Consensus 77 ~~~d~vi~~a~~ 88 (255)
T TIGR01963 77 GGLDILVNNAGI 88 (255)
T ss_pred CCCCEEEECCCC
Confidence 458999887754
No 464
>PRK12743 oxidoreductase; Provisional
Probab=53.53 E-value=98 Score=23.74 Aligned_cols=73 Identities=11% Similarity=0.084 Sum_probs=40.6
Q ss_pred CeEEEEcCCccHHHHHH----hhcCCCceEEEEEC-ChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554 93 PTALCLGGSLEAVRRLL----RGRGGIEKLIMMDT-SYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L 157 (191)
Q Consensus 93 ~~VLDlGcG~G~~~~~l----~~~~~~~~v~~vD~-s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~ 157 (191)
.+||=.|++.| ++..+ .+.+ .+|+.++. +....+...+.... ...++.++..|+.... -
T Consensus 3 k~vlItGas~g-iG~~~a~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (256)
T PRK12743 3 QVAIVTASDSG-IGKACALLLAQQG--FDIGITWHSDEEGAKETAEEVRS---HGVRAEIRQLDLSDLPEGAQALDKLIQ 76 (256)
T ss_pred CEEEEECCCch-HHHHHHHHHHHCC--CEEEEEeCCChHHHHHHHHHHHh---cCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 46788886543 44444 4445 67877754 44444444333322 2335677777765421 0
Q ss_pred CCCCcceEEeCCcc
Q 029554 158 KESSLDLAISCLGL 171 (191)
Q Consensus 158 ~~~~fDlVis~~~l 171 (191)
.-+..|.||.+.+.
T Consensus 77 ~~~~id~li~~ag~ 90 (256)
T PRK12743 77 RLGRIDVLVNNAGA 90 (256)
T ss_pred HcCCCCEEEECCCC
Confidence 11468999988765
No 465
>PRK07201 short chain dehydrogenase; Provisional
Probab=53.43 E-value=80 Score=28.18 Aligned_cols=75 Identities=12% Similarity=0.081 Sum_probs=45.9
Q ss_pred CCeEEEEcCCccHHHH----HHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----
Q 029554 92 FPTALCLGGSLEAVRR----LLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L----- 157 (191)
Q Consensus 92 ~~~VLDlGcG~G~~~~----~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~----- 157 (191)
+.++|=.|++. .++. .|.+.+ .+|+.++-++.-++...+.... ...++.++..|+.... +
T Consensus 371 ~k~vlItGas~-giG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 444 (657)
T PRK07201 371 GKVVLITGASS-GIGRATAIKVAEAG--ATVFLVARNGEALDELVAEIRA---KGGTAHAYTCDLTDSAAVDHTVKDILA 444 (657)
T ss_pred CCEEEEeCCCC-HHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 34677777544 4444 344555 7899999988776665554432 2334677777765421 0
Q ss_pred CCCCcceEEeCCccc
Q 029554 158 KESSLDLAISCLGLH 172 (191)
Q Consensus 158 ~~~~fDlVis~~~l~ 172 (191)
.-+..|++|.+.+..
T Consensus 445 ~~g~id~li~~Ag~~ 459 (657)
T PRK07201 445 EHGHVDYLVNNAGRS 459 (657)
T ss_pred hcCCCCEEEECCCCC
Confidence 114689999988753
No 466
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=53.28 E-value=13 Score=27.84 Aligned_cols=34 Identities=24% Similarity=0.161 Sum_probs=23.3
Q ss_pred CCCCCcceEEeCCcccCcC------------ChHHHHHHHHhccCC
Q 029554 157 LKESSLDLAISCLGLHWTN------------DLPGAMIQVSIFLLP 190 (191)
Q Consensus 157 ~~~~~fDlVis~~~l~~~~------------d~~~~l~~i~r~Lkp 190 (191)
..++..|+|+.|.+|+-+. +++..+..+..+|+|
T Consensus 46 l~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~ 91 (183)
T cd01842 46 LEGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPI 91 (183)
T ss_pred ecCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCC
Confidence 3567789999999988652 244556666666655
No 467
>PRK06180 short chain dehydrogenase; Provisional
Probab=53.20 E-value=97 Score=24.19 Aligned_cols=73 Identities=14% Similarity=0.008 Sum_probs=42.6
Q ss_pred CeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----CC
Q 029554 93 PTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----KE 159 (191)
Q Consensus 93 ~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----~~ 159 (191)
.+||=.|++.| .+...|.+.+ .+|++++-++..++...+. ...++.++..|+.... + ..
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G--~~V~~~~r~~~~~~~l~~~------~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 76 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAG--HRVVGTVRSEAARADFEAL------HPDRALARLLDVTDFDAIDAVVADAEATF 76 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCc--CEEEEEeCCHHHHHHHHhh------cCCCeeEEEccCCCHHHHHHHHHHHHHHh
Confidence 46888887543 2233444555 7899999887765443322 1223556666765321 0 01
Q ss_pred CCcceEEeCCcccC
Q 029554 160 SSLDLAISCLGLHW 173 (191)
Q Consensus 160 ~~fDlVis~~~l~~ 173 (191)
+.+|.|+.+.+..+
T Consensus 77 ~~~d~vv~~ag~~~ 90 (277)
T PRK06180 77 GPIDVLVNNAGYGH 90 (277)
T ss_pred CCCCEEEECCCccC
Confidence 45899998877643
No 468
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=53.18 E-value=45 Score=27.57 Aligned_cols=34 Identities=26% Similarity=0.441 Sum_probs=23.5
Q ss_pred CCCeEEEEcCC-cc-HHHHHHhhcCCCceEEEEECCh
Q 029554 91 TFPTALCLGGS-LE-AVRRLLRGRGGIEKLIMMDTSY 125 (191)
Q Consensus 91 ~~~~VLDlGcG-~G-~~~~~l~~~~~~~~v~~vD~s~ 125 (191)
...+||=+||| .| ..+..|+..+ ..+++.+|.+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aG-vg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAG-VGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCc
Confidence 34679999998 34 3455555554 56899999863
No 469
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=52.88 E-value=7.1 Score=28.85 Aligned_cols=90 Identities=18% Similarity=0.155 Sum_probs=49.5
Q ss_pred CCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHH-HHHhhhhccCCCCceeeEecCCC-CCCCCCCCcceEEeCC
Q 029554 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKL-CKDAQQDAHNDNIETCFVVGDEE-FLPLKESSLDLAISCL 169 (191)
Q Consensus 92 ~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~-a~~~~~~~~~~~~~~~~~~~d~~-~l~~~~~~fDlVis~~ 169 (191)
+.++|-+|+..-+.-......+ ..++..+|.++--++. .+.+. ..+...|+. .+.-..++||.+.|..
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~G-A~~iltveyn~L~i~~~~~dr~---------ssi~p~df~~~~~~y~~~fD~~as~~ 71 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHG-AAKILTVEYNKLEIQEEFRDRL---------SSILPVDFAKNWQKYAGSFDFAASFS 71 (177)
T ss_pred CceEEEEecCCchhhHHHHHcC-CceEEEEeecccccCccccccc---------ccccHHHHHHHHHHhhccchhhheec
Confidence 3467778877555433333333 4678888876521111 11111 111112211 1112347899999999
Q ss_pred cccCcC--------Ch---HHHHHHHHhccCCC
Q 029554 170 GLHWTN--------DL---PGAMIQVSIFLLPD 191 (191)
Q Consensus 170 ~l~~~~--------d~---~~~l~~i~r~Lkpg 191 (191)
+++|+. |+ ...+.++.++||||
T Consensus 72 siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~G 104 (177)
T PF03269_consen 72 SIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPG 104 (177)
T ss_pred hhccccccccCCCCCccccHHHHHHHHHhhccC
Confidence 998862 22 25778888999986
No 470
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=52.85 E-value=1.1e+02 Score=23.76 Aligned_cols=74 Identities=9% Similarity=0.054 Sum_probs=39.6
Q ss_pred eEEEEcCCcc---HHHHHHhhcCCCceEEEEE-CChhHHHHHHHhhhhccCCCCceeeEecCCCCCC---------C---
Q 029554 94 TALCLGGSLE---AVRRLLRGRGGIEKLIMMD-TSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP---------L--- 157 (191)
Q Consensus 94 ~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD-~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~---------~--- 157 (191)
.+|-.|++.| .+...|.+.+ .+|++++ .++..++...+.... ....+..++..|+.... +
T Consensus 3 ~~lITGas~gIG~~~a~~l~~~G--~~V~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~ 78 (267)
T TIGR02685 3 AAVVTGAAKRIGSSIAVALHQEG--YRVVLHYHRSAAAASTLAAELNA--RRPNSAVTCQADLSNSATLFSRCEAIIDAC 78 (267)
T ss_pred EEEEeCCCCcHHHHHHHHHHhCC--CeEEEEcCCcHHHHHHHHHHHHh--ccCCceEEEEccCCCchhhHHHHHHHHHHH
Confidence 4677777655 2344445555 7788864 344444444333321 11223455666765432 0
Q ss_pred --CCCCcceEEeCCcc
Q 029554 158 --KESSLDLAISCLGL 171 (191)
Q Consensus 158 --~~~~fDlVis~~~l 171 (191)
.-+..|+||.|.+.
T Consensus 79 ~~~~g~iD~lv~nAG~ 94 (267)
T TIGR02685 79 FRAFGRCDVLVNNASA 94 (267)
T ss_pred HHccCCceEEEECCcc
Confidence 11568999988764
No 471
>PRK08177 short chain dehydrogenase; Provisional
Probab=52.84 E-value=75 Score=23.86 Aligned_cols=68 Identities=19% Similarity=0.089 Sum_probs=37.8
Q ss_pred eEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--------CCCCCc
Q 029554 94 TALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--------LKESSL 162 (191)
Q Consensus 94 ~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--------~~~~~f 162 (191)
+||=.|+..| .+...|.+.+ .+|++++.++.-.+...+. .++.+...|+.... +.++.+
T Consensus 3 ~vlItG~sg~iG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~--------~~~~~~~~D~~d~~~~~~~~~~~~~~~i 72 (225)
T PRK08177 3 TALIIGASRGLGLGLVDRLLERG--WQVTATVRGPQQDTALQAL--------PGVHIEKLDMNDPASLDQLLQRLQGQRF 72 (225)
T ss_pred EEEEeCCCchHHHHHHHHHHhCC--CEEEEEeCCCcchHHHHhc--------cccceEEcCCCCHHHHHHHHHHhhcCCC
Confidence 4666675433 2344455555 7899999887544333211 12445555654321 223568
Q ss_pred ceEEeCCcc
Q 029554 163 DLAISCLGL 171 (191)
Q Consensus 163 DlVis~~~l 171 (191)
|.|+.+.+.
T Consensus 73 d~vi~~ag~ 81 (225)
T PRK08177 73 DLLFVNAGI 81 (225)
T ss_pred CEEEEcCcc
Confidence 999987654
No 472
>PRK06182 short chain dehydrogenase; Validated
Probab=52.83 E-value=94 Score=24.11 Aligned_cols=69 Identities=14% Similarity=0.117 Sum_probs=40.5
Q ss_pred CeEEEEcCCccHHHHHH----hhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----C
Q 029554 93 PTALCLGGSLEAVRRLL----RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----K 158 (191)
Q Consensus 93 ~~VLDlGcG~G~~~~~l----~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----~ 158 (191)
.+||=.|++. .++..+ .+.+ .+|++++-++.-++.... ..+.++.+|+.... + .
T Consensus 4 k~vlItGasg-giG~~la~~l~~~G--~~V~~~~r~~~~l~~~~~---------~~~~~~~~Dv~~~~~~~~~~~~~~~~ 71 (273)
T PRK06182 4 KVALVTGASS-GIGKATARRLAAQG--YTVYGAARRVDKMEDLAS---------LGVHPLSLDVTDEASIKAAVDTIIAE 71 (273)
T ss_pred CEEEEECCCC-hHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHh---------CCCeEEEeeCCCHHHHHHHHHHHHHh
Confidence 4678777643 344444 4445 789999988765433211 12556667765321 0 1
Q ss_pred CCCcceEEeCCcccC
Q 029554 159 ESSLDLAISCLGLHW 173 (191)
Q Consensus 159 ~~~fDlVis~~~l~~ 173 (191)
.+..|+||.+.+...
T Consensus 72 ~~~id~li~~ag~~~ 86 (273)
T PRK06182 72 EGRIDVLVNNAGYGS 86 (273)
T ss_pred cCCCCEEEECCCcCC
Confidence 246899999887654
No 473
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=52.69 E-value=50 Score=27.29 Aligned_cols=33 Identities=30% Similarity=0.362 Sum_probs=22.9
Q ss_pred CCeEEEEcCCc-c-HHHHHHhhcCCCceEEEEECCh
Q 029554 92 FPTALCLGGSL-E-AVRRLLRGRGGIEKLIMMDTSY 125 (191)
Q Consensus 92 ~~~VLDlGcG~-G-~~~~~l~~~~~~~~v~~vD~s~ 125 (191)
..+||=+|||. | ..+..|+..| ..+++.+|.+.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aG-vg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAG-IGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCc
Confidence 45799999983 3 3445555554 56899999874
No 474
>PRK08278 short chain dehydrogenase; Provisional
Probab=52.60 E-value=92 Score=24.32 Aligned_cols=76 Identities=12% Similarity=0.109 Sum_probs=42.9
Q ss_pred CCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhH-------HHHHHHhhhhccCCCCceeeEecCCCCCC-----
Q 029554 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDM-------LKLCKDAQQDAHNDNIETCFVVGDEEFLP----- 156 (191)
Q Consensus 92 ~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~-------l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----- 156 (191)
+.++|=.|++.| .+...|.+.+ .+|+.++.+..- +....+.... ...++.++..|+....
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~D~~~~~~i~~~ 80 (273)
T PRK08278 6 GKTLFITGASRGIGLAIALRAARDG--ANIVIAAKTAEPHPKLPGTIHTAAEEIEA---AGGQALPLVGDVRDEDQVAAA 80 (273)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCC--CEEEEEecccccccchhhHHHHHHHHHHh---cCCceEEEEecCCCHHHHHHH
Confidence 457888887554 2344455555 789998876531 2222222222 2234667777765422
Q ss_pred CC-----CCCcceEEeCCccc
Q 029554 157 LK-----ESSLDLAISCLGLH 172 (191)
Q Consensus 157 ~~-----~~~fDlVis~~~l~ 172 (191)
+. -+.+|+||.+.+..
T Consensus 81 ~~~~~~~~g~id~li~~ag~~ 101 (273)
T PRK08278 81 VAKAVERFGGIDICVNNASAI 101 (273)
T ss_pred HHHHHHHhCCCCEEEECCCCc
Confidence 11 14689999887654
No 475
>PRK08628 short chain dehydrogenase; Provisional
Probab=52.43 E-value=90 Score=23.89 Aligned_cols=74 Identities=14% Similarity=0.108 Sum_probs=42.3
Q ss_pred CCCeEEEEcCCccHHHH----HHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----CC---
Q 029554 91 TFPTALCLGGSLEAVRR----LLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LK--- 158 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~----~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~~--- 158 (191)
.+.+||=.|++ |.++. .|.+.+ .+++.++.++...+.. +.... ...++.++..|+.... +.
T Consensus 6 ~~~~ilItGas-ggiG~~la~~l~~~G--~~v~~~~r~~~~~~~~-~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (258)
T PRK08628 6 KDKVVIVTGGA-SGIGAAISLRLAEEG--AIPVIFGRSAPDDEFA-EELRA---LQPRAEFVQVDLTDDAQCRDAVEQTV 78 (258)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHcC--CcEEEEcCChhhHHHH-HHHHh---cCCceEEEEccCCCHHHHHHHHHHHH
Confidence 34567777764 43444 445555 6788888777655322 22221 2334677777765321 11
Q ss_pred --CCCcceEEeCCcc
Q 029554 159 --ESSLDLAISCLGL 171 (191)
Q Consensus 159 --~~~fDlVis~~~l 171 (191)
-+..|.||.+.+.
T Consensus 79 ~~~~~id~vi~~ag~ 93 (258)
T PRK08628 79 AKFGRIDGLVNNAGV 93 (258)
T ss_pred HhcCCCCEEEECCcc
Confidence 1468999988764
No 476
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=51.74 E-value=56 Score=28.66 Aligned_cols=42 Identities=12% Similarity=0.273 Sum_probs=30.5
Q ss_pred CCeEEEEcCCc-c-HHHHHHhhcCCCceEEEEECChhHHHHHHHhh
Q 029554 92 FPTALCLGGSL-E-AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ 135 (191)
Q Consensus 92 ~~~VLDlGcG~-G-~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~ 135 (191)
-.+|-=||+|+ | .++..++..+ .+|+..|.+++.++.+.++.
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG--~~V~l~D~~~e~l~~~~~~i 50 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAG--HTVLLYDARAGAAAAARDGI 50 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHH
Confidence 35677788872 3 4555566666 89999999999998875544
No 477
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=51.66 E-value=57 Score=26.98 Aligned_cols=76 Identities=18% Similarity=0.217 Sum_probs=44.4
Q ss_pred CeEEEEcCCccHH----HHHHhhcCCCceEEEEE-CChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----CCCCCc
Q 029554 93 PTALCLGGSLEAV----RRLLRGRGGIEKLIMMD-TSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LKESSL 162 (191)
Q Consensus 93 ~~VLDlGcG~G~~----~~~l~~~~~~~~v~~vD-~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~~~~~f 162 (191)
.+||-.| |.|+. ...|.+.+ -.|+++| ++...++.. ++..........+.|.++|+...+ |....|
T Consensus 3 ~~VLVtG-gaGyiGsht~l~L~~~g--y~v~~vDNl~n~~~~sl-~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~f 78 (343)
T KOG1371|consen 3 KHVLVTG-GAGYIGSHTVLALLKRG--YGVVIVDNLNNSYLESL-KRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKF 78 (343)
T ss_pred cEEEEec-CCcceehHHHHHHHhCC--CcEEEEecccccchhHH-HHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCC
Confidence 3567665 44433 33455656 7899998 443333222 233221233467999999987644 666779
Q ss_pred ceEEeCCccc
Q 029554 163 DLAISCLGLH 172 (191)
Q Consensus 163 DlVis~~~l~ 172 (191)
|.|+-..++.
T Consensus 79 d~V~Hfa~~~ 88 (343)
T KOG1371|consen 79 DAVMHFAALA 88 (343)
T ss_pred ceEEeehhhh
Confidence 9887555443
No 478
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=51.50 E-value=37 Score=26.13 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=20.9
Q ss_pred CCeEEEEcCC-ccH-HHHHHhhcCCCceEEEEECCh
Q 029554 92 FPTALCLGGS-LEA-VRRLLRGRGGIEKLIMMDTSY 125 (191)
Q Consensus 92 ~~~VLDlGcG-~G~-~~~~l~~~~~~~~v~~vD~s~ 125 (191)
..+|+=+||| .|. ....|+..+ ..+++.+|.+.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~G-vg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCE
Confidence 4579999998 343 344555443 56787776543
No 479
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=51.24 E-value=41 Score=27.79 Aligned_cols=94 Identities=12% Similarity=0.032 Sum_probs=60.6
Q ss_pred CCCeEEEEcCCc-cHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeCC
Q 029554 91 TFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCL 169 (191)
Q Consensus 91 ~~~~VLDlGcG~-G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~~ 169 (191)
++.+|.-+|.|. |.....++-- -.+.|+.+|.|..-+.+...-+. .++.........+.-.-.+.|+||..-
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~g-lgA~Vtild~n~~rl~~ldd~f~------~rv~~~~st~~~iee~v~~aDlvIgaV 239 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIG-LGADVTILDLNIDRLRQLDDLFG------GRVHTLYSTPSNIEEAVKKADLVIGAV 239 (371)
T ss_pred CCccEEEECCccccchHHHHHhc-cCCeeEEEecCHHHHhhhhHhhC------ceeEEEEcCHHHHHHHhhhccEEEEEE
Confidence 345677888774 4555555432 24899999999877766654432 235555555444332235689998765
Q ss_pred cccCcCChHHHHHHHHhccCCC
Q 029554 170 GLHWTNDLPGAMIQVSIFLLPD 191 (191)
Q Consensus 170 ~l~~~~d~~~~l~~i~r~Lkpg 191 (191)
-+.--..|.-+.+++.+-+|||
T Consensus 240 LIpgakaPkLvt~e~vk~MkpG 261 (371)
T COG0686 240 LIPGAKAPKLVTREMVKQMKPG 261 (371)
T ss_pred EecCCCCceehhHHHHHhcCCC
Confidence 4555567778888888888886
No 480
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=51.22 E-value=44 Score=26.85 Aligned_cols=37 Identities=24% Similarity=0.252 Sum_probs=24.9
Q ss_pred EEEEcCCc--cHHHHHHhhcCCCceEEEEECChhHHHHHHH
Q 029554 95 ALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133 (191)
Q Consensus 95 VLDlGcG~--G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~ 133 (191)
|-=||+|. +.+...|.+.+ .+|++.|.++..++...+
T Consensus 3 Ig~IGlG~mG~~la~~L~~~g--~~V~~~dr~~~~~~~l~~ 41 (298)
T TIGR00872 3 LGLIGLGRMGANIVRRLAKRG--HDCVGYDHDQDAVKAMKE 41 (298)
T ss_pred EEEEcchHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH
Confidence 55567764 23455555655 789999999987766654
No 481
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=50.94 E-value=39 Score=27.56 Aligned_cols=44 Identities=18% Similarity=0.086 Sum_probs=29.5
Q ss_pred cCCCeEEEEcCCc-cHHHHHHhhc-CCCceEEEEECChhHHHHHHH
Q 029554 90 KTFPTALCLGGSL-EAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKD 133 (191)
Q Consensus 90 ~~~~~VLDlGcG~-G~~~~~l~~~-~~~~~v~~vD~s~~~l~~a~~ 133 (191)
.++.+||=+|||. |.++..+++. ....+++++|.++.-++.+++
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 4678999999863 3333344443 334689999999887777653
No 482
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=50.71 E-value=1e+02 Score=28.06 Aligned_cols=79 Identities=13% Similarity=0.127 Sum_probs=46.0
Q ss_pred CCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----C
Q 029554 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----K 158 (191)
Q Consensus 92 ~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----~ 158 (191)
+.+||=.|++.| .+...|.+.+ .+|+++|.+...++...+..... .....+.++..|+.... + .
T Consensus 414 gkvvLVTGasggIG~aiA~~La~~G--a~Vvi~~r~~~~~~~~~~~l~~~-~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~ 490 (676)
T TIGR02632 414 RRVAFVTGGAGGIGRETARRLAAEG--AHVVLADLNLEAAEAVAAEINGQ-FGAGRAVALKMDVTDEQAVKAAFADVALA 490 (676)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHHHHhh-cCCCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence 457787776543 2233444555 79999999987665554443210 11123556677765321 0 1
Q ss_pred CCCcceEEeCCcccC
Q 029554 159 ESSLDLAISCLGLHW 173 (191)
Q Consensus 159 ~~~fDlVis~~~l~~ 173 (191)
-+.+|+||.+.++..
T Consensus 491 ~g~iDilV~nAG~~~ 505 (676)
T TIGR02632 491 YGGVDIVVNNAGIAT 505 (676)
T ss_pred cCCCcEEEECCCCCC
Confidence 146899999887643
No 483
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=50.68 E-value=1.1e+02 Score=23.08 Aligned_cols=74 Identities=19% Similarity=0.123 Sum_probs=43.0
Q ss_pred CCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------CC
Q 029554 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------LK 158 (191)
Q Consensus 92 ~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~~ 158 (191)
+.+||-.|++.| .+...+.+.+ .+|++++-++.-.....+.... ..++.++..|+.... ..
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEG--AQVCINSRNENKLKRMKKTLSK----YGNIHYVVGDVSSTESARNVIEKAAKV 78 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh----cCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 457888887543 2233444555 7899999988765554333321 124667777765421 00
Q ss_pred CCCcceEEeCCcc
Q 029554 159 ESSLDLAISCLGL 171 (191)
Q Consensus 159 ~~~fDlVis~~~l 171 (191)
-+.+|.|+.+.+.
T Consensus 79 ~~~id~ii~~ag~ 91 (238)
T PRK05786 79 LNAIDGLVVTVGG 91 (238)
T ss_pred hCCCCEEEEcCCC
Confidence 1357888877654
No 484
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=50.54 E-value=88 Score=25.53 Aligned_cols=79 Identities=14% Similarity=0.074 Sum_probs=43.7
Q ss_pred CCCeEEEEcCCc-cHHHHHH-hhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCCCCCCCcceEEeC
Q 029554 91 TFPTALCLGGSL-EAVRRLL-RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISC 168 (191)
Q Consensus 91 ~~~~VLDlGcG~-G~~~~~l-~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~fDlVis~ 168 (191)
.+.+|.=+|+|. |.....+ ...+-..+++.+|++++.+..-..-+..-.....++.+...+.+.+ ...|+||..
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~----~~adivIit 80 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDC----KDADLVVIT 80 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHh----CCCCEEEEe
Confidence 456899999975 5444433 3333335899999988754333222221000112344444444443 357999987
Q ss_pred CcccC
Q 029554 169 LGLHW 173 (191)
Q Consensus 169 ~~l~~ 173 (191)
.+...
T Consensus 81 ag~~~ 85 (315)
T PRK00066 81 AGAPQ 85 (315)
T ss_pred cCCCC
Confidence 77643
No 485
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=50.30 E-value=1.1e+02 Score=23.07 Aligned_cols=74 Identities=18% Similarity=0.146 Sum_probs=40.1
Q ss_pred eEEEEcCCccHHHHHH----hhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----CC
Q 029554 94 TALCLGGSLEAVRRLL----RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----KE 159 (191)
Q Consensus 94 ~VLDlGcG~G~~~~~l----~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----~~ 159 (191)
+||-.|+ +|.++..+ .+.+ .+|++++.++. +.+++..........++.++..|+.... + ..
T Consensus 4 ~vlItG~-s~~iG~~la~~l~~~g--~~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 78 (245)
T PRK12824 4 IALVTGA-KRGIGSAIARELLNDG--YRVIATYFSGN--DCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEE 78 (245)
T ss_pred EEEEeCC-CchHHHHHHHHHHHcC--CEEEEEeCCcH--HHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 5677774 55444444 3444 78999988754 2222211111112334777788866421 0 12
Q ss_pred CCcceEEeCCccc
Q 029554 160 SSLDLAISCLGLH 172 (191)
Q Consensus 160 ~~fDlVis~~~l~ 172 (191)
+.+|.|+.+.+..
T Consensus 79 ~~id~vi~~ag~~ 91 (245)
T PRK12824 79 GPVDILVNNAGIT 91 (245)
T ss_pred CCCCEEEECCCCC
Confidence 4689999887643
No 486
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=50.27 E-value=1e+02 Score=24.85 Aligned_cols=31 Identities=16% Similarity=0.073 Sum_probs=21.3
Q ss_pred CeEEEEcCC--ccHHHHHHhhcCCCceEEEEECCh
Q 029554 93 PTALCLGGS--LEAVRRLLRGRGGIEKLIMMDTSY 125 (191)
Q Consensus 93 ~~VLDlGcG--~G~~~~~l~~~~~~~~v~~vD~s~ 125 (191)
.+|+=+|+| .|.++..|.+.+ .+|+.+.-++
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g--~~V~~~~r~~ 38 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAG--FDVHFLLRSD 38 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCC--CeEEEEEeCC
Confidence 468888887 345566666666 7788887765
No 487
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=50.12 E-value=1e+02 Score=23.69 Aligned_cols=75 Identities=12% Similarity=0.046 Sum_probs=40.8
Q ss_pred CCCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----
Q 029554 91 TFPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L----- 157 (191)
Q Consensus 91 ~~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~----- 157 (191)
.+..+|=.|+..| .+...|.+.+ .+|+++|.++. +...+.... ...++..+..|+.... +
T Consensus 9 ~~k~~lItG~~~gIG~a~a~~l~~~G--~~vv~~~~~~~--~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 81 (253)
T PRK08993 9 EGKVAVVTGCDTGLGQGMALGLAEAG--CDIVGINIVEP--TETIEQVTA---LGRRFLSLTADLRKIDGIPALLERAVA 81 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCC--CEEEEecCcch--HHHHHHHHh---cCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 3457888886543 2333444555 78998887642 122222221 1234566677765321 0
Q ss_pred CCCCcceEEeCCccc
Q 029554 158 KESSLDLAISCLGLH 172 (191)
Q Consensus 158 ~~~~fDlVis~~~l~ 172 (191)
..+..|++|.+.+..
T Consensus 82 ~~~~~D~li~~Ag~~ 96 (253)
T PRK08993 82 EFGHIDILVNNAGLI 96 (253)
T ss_pred HhCCCCEEEECCCCC
Confidence 114689999887654
No 488
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=50.02 E-value=52 Score=26.23 Aligned_cols=40 Identities=15% Similarity=0.312 Sum_probs=28.8
Q ss_pred CeEEEEcCCc--cHHHHHHhhcCCCceEEEEECChhHHHHHHHh
Q 029554 93 PTALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDA 134 (191)
Q Consensus 93 ~~VLDlGcG~--G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~ 134 (191)
.+|.=+|+|+ +.++..++..+ .+|+++|.++..++.++++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G--~~V~l~d~~~~~l~~~~~~ 45 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTG--YDVTIVDVSEEILKNAMEL 45 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHHHHH
Confidence 4577888883 24455556666 6899999999998876554
No 489
>PRK06940 short chain dehydrogenase; Provisional
Probab=49.94 E-value=1.2e+02 Score=23.67 Aligned_cols=74 Identities=9% Similarity=0.128 Sum_probs=42.1
Q ss_pred eEEEEcCCccHHHHHHhhcC-CCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C----CCCCcc
Q 029554 94 TALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L----KESSLD 163 (191)
Q Consensus 94 ~VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~----~~~~fD 163 (191)
.+|=.|+ |.++..++... ...+|+.+|.++.-++...+.... ...++.++..|+.... + ..+..|
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id 78 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLRE---AGFDVSTQEVDVSSRESVKALAATAQTLGPVT 78 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHh---cCCeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence 3555564 34555444321 137899999887655554444322 2234666777765421 0 125689
Q ss_pred eEEeCCccc
Q 029554 164 LAISCLGLH 172 (191)
Q Consensus 164 lVis~~~l~ 172 (191)
.+|.+.++.
T Consensus 79 ~li~nAG~~ 87 (275)
T PRK06940 79 GLVHTAGVS 87 (275)
T ss_pred EEEECCCcC
Confidence 999988764
No 490
>PF05059 Orbi_VP4: Orbivirus VP4 core protein; InterPro: IPR007753 Orbivirus are double stranded RNA retroviruses of which the Bluetongue virus (BTV) is a member. The core of BTV is a multienzyme complex composed of two major proteins (VP7 and VP3) and three minor proteins (VP1, VP4 and VP6) in addition to the viral genome. VP4 has been shown to perform all RNA capping activities and has both methyltransferase type 1 and type 2 activities associated with it [].; GO: 0019028 viral capsid; PDB: 2JHP_A 2JHA_A 2JH9_A 2JH8_A 2JHC_A.
Probab=49.79 E-value=34 Score=30.40 Aligned_cols=47 Identities=13% Similarity=0.042 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhcccCCCeEEEEcCCccHHHHHHhhcCC----CceEEEEEC
Q 029554 77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG----IEKLIMMDT 123 (191)
Q Consensus 77 ~~~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~----~~~v~~vD~ 123 (191)
+-++|+..|.+.......|.-||||.|.....++++-| ..+-+.+|+
T Consensus 176 tdEKLVSMLDY~vysad~V~YVGsGDlRTL~~F~krdp~RF~rv~W~~~DP 226 (644)
T PF05059_consen 176 TDEKLVSMLDYAVYSADEVHYVGSGDLRTLMQFAKRDPKRFNRVQWHCIDP 226 (644)
T ss_dssp -S-HHHHHHHHH-SS-SEEEEES-TTSHHHHHHHHHSHHHHHTSEEEEE-T
T ss_pred cchhHHHHHHhhhccccEEEEeccCCcHHHHHHHhhChhhhhceEEEEECC
Confidence 34567777777666777999999999999999986532 245556664
No 491
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=49.34 E-value=16 Score=30.71 Aligned_cols=51 Identities=16% Similarity=0.108 Sum_probs=40.3
Q ss_pred CCCceeeEecCCCC-C-CCCCCCcceEEeCCcccCcCC--hHHHHHHHHhccCCC
Q 029554 141 DNIETCFVVGDEEF-L-PLKESSLDLAISCLGLHWTND--LPGAMIQVSIFLLPD 191 (191)
Q Consensus 141 ~~~~~~~~~~d~~~-l-~~~~~~fDlVis~~~l~~~~d--~~~~l~~i~r~Lkpg 191 (191)
...+++++.+++++ + ..+++++|.++......|+++ ....+++|.++++||
T Consensus 273 ~~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pg 327 (380)
T PF11899_consen 273 RLDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPG 327 (380)
T ss_pred CCCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCC
Confidence 34678888888654 2 246799999999999999964 456799999999987
No 492
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=49.11 E-value=23 Score=34.42 Aligned_cols=88 Identities=18% Similarity=0.015 Sum_probs=47.4
Q ss_pred CCeEEEEcCCccHHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-CCCCCcceEEeCCc
Q 029554 92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-LKESSLDLAISCLG 170 (191)
Q Consensus 92 ~~~VLDlGcG~G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-~~~~~fDlVis~~~ 170 (191)
...+||+|.|+ ..+.|.-.-+...|+++|+-|-.. ... --.....+++.|..... .....+|.|.|.++
T Consensus 823 ~~~~lDLGTGP--E~RiLsliP~~~pvtmvD~RP~ae-----~m~---~w~t~T~y~~~DYl~~~~~~~~~~D~vtailS 892 (1289)
T PF06016_consen 823 PDHWLDLGTGP--ECRILSLIPPDTPVTMVDTRPFAE-----PMN---CWNTQTQYIQADYLSDAWWNGTPFDAVTAILS 892 (1289)
T ss_dssp C-CEEEET--T--T-CHHHCS-TTSEEEEEESS--SS-----SCC---CCSTTEEEEES-TTSCCGGCC---SEEEECTC
T ss_pred cceEEEccCCc--cceeeeccCCCCceEEEecCCccc-----ccc---hhhhcceeeeeccccceeEecCCCCEEEEEee
Confidence 56899998765 333343333457899999866321 110 11245889999966433 23467999999988
Q ss_pred ccCc-----CChHHHHHHHHhccC
Q 029554 171 LHWT-----NDLPGAMIQVSIFLL 189 (191)
Q Consensus 171 l~~~-----~d~~~~l~~i~r~Lk 189 (191)
|.-- -++...++++.+.++
T Consensus 893 LGAAaA~a~~tl~~~l~~~l~~~~ 916 (1289)
T PF06016_consen 893 LGAAAASANVTLDAGLQQFLSQCV 916 (1289)
T ss_dssp HHHHHHHCT--HHHHHHHHHHHHH
T ss_pred ehhhhhcCCCcHHHHHHHHHHHHH
Confidence 7632 266677777766554
No 493
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=49.04 E-value=1e+02 Score=23.86 Aligned_cols=76 Identities=14% Similarity=0.110 Sum_probs=42.2
Q ss_pred CCCeEEEEcCCcc-HH----HHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC---------
Q 029554 91 TFPTALCLGGSLE-AV----RRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--------- 156 (191)
Q Consensus 91 ~~~~VLDlGcG~G-~~----~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--------- 156 (191)
.+..+|-.|++.| .+ ...|++.+ .+|+.++.++...+...+...+ .....++..|+....
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G--~~v~l~~r~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~ 82 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALG--AELAVTYLNDKARPYVEPLAEE----LDAPIFLPLDVREPGQLEAVFARI 82 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcC--CEEEEEeCChhhHHHHHHHHHh----hccceEEecCcCCHHHHHHHHHHH
Confidence 3567888887642 33 44555556 7898888876543222222111 111345566655321
Q ss_pred -CCCCCcceEEeCCccc
Q 029554 157 -LKESSLDLAISCLGLH 172 (191)
Q Consensus 157 -~~~~~fDlVis~~~l~ 172 (191)
-.-+..|++|.|.++.
T Consensus 83 ~~~~g~ld~lv~nAg~~ 99 (258)
T PRK07533 83 AEEWGRLDFLLHSIAFA 99 (258)
T ss_pred HHHcCCCCEEEEcCccC
Confidence 0125789999988754
No 494
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=48.85 E-value=58 Score=26.76 Aligned_cols=42 Identities=10% Similarity=0.060 Sum_probs=30.5
Q ss_pred CCeEEEEcCCc--cHHHHHHhhcCCCceEEEEECChhHHHHHHHhh
Q 029554 92 FPTALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ 135 (191)
Q Consensus 92 ~~~VLDlGcG~--G~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~ 135 (191)
..+|-=||+|+ ..++..++..+ .+|+..|++++.++.+++..
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG--~~V~l~D~~~~~~~~~~~~i 50 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHG--LDVVAWDPAPGAEAALRANV 50 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHH
Confidence 35688889983 34455566666 89999999999887765543
No 495
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=48.55 E-value=6.7 Score=26.10 Aligned_cols=31 Identities=6% Similarity=-0.094 Sum_probs=18.1
Q ss_pred EEEEcCCccHHHHHHhhcC-CCceEEEEECCh
Q 029554 95 ALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSY 125 (191)
Q Consensus 95 VLDlGcG~G~~~~~l~~~~-~~~~v~~vD~s~ 125 (191)
-+|||||.|.....-...+ ....++-+.+.-
T Consensus 6 NIDIGcG~GNTmda~fRsct~htSyYy~S~~~ 37 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAAFRSCTLHTSYYYLSTNH 37 (124)
T ss_pred ccccccCCCcchhhhhhccccccceEEEeecc
Confidence 3799999997765444332 234454444443
No 496
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=48.21 E-value=41 Score=32.29 Aligned_cols=72 Identities=19% Similarity=0.028 Sum_probs=39.4
Q ss_pred CCeEEEEcCCc-cHH-HHHHhhcCCCc-------------eEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCC---
Q 029554 92 FPTALCLGGSL-EAV-RRLLRGRGGIE-------------KLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE--- 153 (191)
Q Consensus 92 ~~~VLDlGcG~-G~~-~~~l~~~~~~~-------------~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~--- 153 (191)
..+|+=||||. |.. ...|.+. +.. .|+.+|.+..-.+.+.+.. .++..+..|+.
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~-------~~~~~v~lDv~D~e 640 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI-------ENAEAVQLDVSDSE 640 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCHHHHHHHHHhc-------CCCceEEeecCCHH
Confidence 45899999973 443 3344432 222 3888999876555443322 12344445433
Q ss_pred CCCCCCCCcceEEeCCcc
Q 029554 154 FLPLKESSLDLAISCLGL 171 (191)
Q Consensus 154 ~l~~~~~~fDlVis~~~l 171 (191)
.+.-.-...|+|++..--
T Consensus 641 ~L~~~v~~~DaVIsalP~ 658 (1042)
T PLN02819 641 SLLKYVSQVDVVISLLPA 658 (1042)
T ss_pred HHHHhhcCCCEEEECCCc
Confidence 222100348999987543
No 497
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=48.11 E-value=97 Score=24.14 Aligned_cols=75 Identities=20% Similarity=0.148 Sum_probs=49.2
Q ss_pred CCCeEEEEcCCccHH---HHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------C
Q 029554 91 TFPTALCLGGSLEAV---RRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----------L 157 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~---~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~----------~ 157 (191)
.+-+||=-|.|+|.- +..+.+.+ -+|+.+--++.-++.+++... .+...+.|+.+.. -
T Consensus 4 tgnTiLITGG~sGIGl~lak~f~elg--N~VIi~gR~e~~L~e~~~~~p-------~~~t~v~Dv~d~~~~~~lvewLkk 74 (245)
T COG3967 4 TGNTILITGGASGIGLALAKRFLELG--NTVIICGRNEERLAEAKAENP-------EIHTEVCDVADRDSRRELVEWLKK 74 (245)
T ss_pred cCcEEEEeCCcchhhHHHHHHHHHhC--CEEEEecCcHHHHHHHHhcCc-------chheeeecccchhhHHHHHHHHHh
Confidence 345788888777743 33344445 789999999988888865432 3566666655322 1
Q ss_pred CCCCcceEEeCCcccCc
Q 029554 158 KESSLDLAISCLGLHWT 174 (191)
Q Consensus 158 ~~~~fDlVis~~~l~~~ 174 (191)
.-...++++.|.+++.-
T Consensus 75 ~~P~lNvliNNAGIqr~ 91 (245)
T COG3967 75 EYPNLNVLINNAGIQRN 91 (245)
T ss_pred hCCchheeeecccccch
Confidence 12358999999888764
No 498
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=48.05 E-value=1.2e+02 Score=23.43 Aligned_cols=72 Identities=22% Similarity=0.223 Sum_probs=42.3
Q ss_pred CCeEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC-----C-----C
Q 029554 92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-----K 158 (191)
Q Consensus 92 ~~~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~-----~-----~ 158 (191)
+.++|=.|++.| .+...|.+.+ .+|+.++-++..++...+. ...++.++..|+.... + .
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G--~~V~~~~r~~~~~~~l~~~------~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVDRFVAEG--ARVAVLDKSAAGLQELEAA------HGDAVVGVEGDVRSLDDHKEAVARCVAA 76 (262)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHhh------cCCceEEEEeccCCHHHHHHHHHHHHHH
Confidence 456777886544 2344445555 7899999887655444321 1223566667765321 0 0
Q ss_pred CCCcceEEeCCcc
Q 029554 159 ESSLDLAISCLGL 171 (191)
Q Consensus 159 ~~~fDlVis~~~l 171 (191)
-+..|.+|.+.+.
T Consensus 77 ~g~id~li~~Ag~ 89 (262)
T TIGR03325 77 FGKIDCLIPNAGI 89 (262)
T ss_pred hCCCCEEEECCCC
Confidence 1468999988764
No 499
>PRK06953 short chain dehydrogenase; Provisional
Probab=47.72 E-value=1.2e+02 Score=22.73 Aligned_cols=68 Identities=22% Similarity=0.180 Sum_probs=38.6
Q ss_pred eEEEEcCCcc---HHHHHHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC--------CCCCCc
Q 029554 94 TALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--------LKESSL 162 (191)
Q Consensus 94 ~VLDlGcG~G---~~~~~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~--------~~~~~f 162 (191)
++|=.|++.| .+...|.+.+ .+|+.++.++..++..... .+.++..|+.... ...+.+
T Consensus 3 ~vlvtG~sg~iG~~la~~L~~~G--~~v~~~~r~~~~~~~~~~~---------~~~~~~~D~~~~~~v~~~~~~~~~~~~ 71 (222)
T PRK06953 3 TVLIVGASRGIGREFVRQYRADG--WRVIATARDAAALAALQAL---------GAEALALDVADPASVAGLAWKLDGEAL 71 (222)
T ss_pred eEEEEcCCCchhHHHHHHHHhCC--CEEEEEECCHHHHHHHHhc---------cceEEEecCCCHHHHHHHHHHhcCCCC
Confidence 4666666433 2344445545 7899999887655433211 1345566654321 233468
Q ss_pred ceEEeCCccc
Q 029554 163 DLAISCLGLH 172 (191)
Q Consensus 163 DlVis~~~l~ 172 (191)
|+|+.+.+..
T Consensus 72 d~vi~~ag~~ 81 (222)
T PRK06953 72 DAAVYVAGVY 81 (222)
T ss_pred CEEEECCCcc
Confidence 9999877653
No 500
>PRK05717 oxidoreductase; Validated
Probab=47.70 E-value=1.2e+02 Score=23.12 Aligned_cols=73 Identities=15% Similarity=0.102 Sum_probs=42.3
Q ss_pred CCCeEEEEcCCccHHHH----HHhhcCCCceEEEEECChhHHHHHHHhhhhccCCCCceeeEecCCCCCC----------
Q 029554 91 TFPTALCLGGSLEAVRR----LLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP---------- 156 (191)
Q Consensus 91 ~~~~VLDlGcG~G~~~~----~l~~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~d~~~l~---------- 156 (191)
.+.+||-.|++ |.++. .|.+.+ .+|+.+|.++.-.+...+.. ..++.++..|+....
T Consensus 9 ~~k~vlItG~s-g~IG~~~a~~l~~~g--~~v~~~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~~~ 79 (255)
T PRK05717 9 NGRVALVTGAA-RGIGLGIAAWLIAEG--WQVVLADLDRERGSKVAKAL------GENAWFIAMDVADEAQVAAGVAEVL 79 (255)
T ss_pred CCCEEEEeCCc-chHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHHc------CCceEEEEccCCCHHHHHHHHHHHH
Confidence 34578877754 44444 444555 78999998865433322221 123667777765421
Q ss_pred CCCCCcceEEeCCccc
Q 029554 157 LKESSLDLAISCLGLH 172 (191)
Q Consensus 157 ~~~~~fDlVis~~~l~ 172 (191)
-..+.+|.||.+.+..
T Consensus 80 ~~~g~id~li~~ag~~ 95 (255)
T PRK05717 80 GQFGRLDALVCNAAIA 95 (255)
T ss_pred HHhCCCCEEEECCCcc
Confidence 0114689999887754
Done!