BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029556
(191 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q03601|NHL1_CAEEL RING finger protein nhl-1 OS=Caenorhabditis elegans GN=nhl-1 PE=1
SV=2
Length = 974
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 85 LAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLDHGNQLI 140
L GD + + G+A+F+ P AVD G+IYVADK NH ++ D Q I
Sbjct: 787 LEGDHLFSFGGHGQGNAKFNNPWGVAVDDLGSIYVADKDNH---RVQVFDKNGQFI 839
>sp|Q5ZI67|NHLC2_CHICK NHL repeat-containing protein 2 OS=Gallus gallus GN=NHLRC2 PE=2
SV=1
Length = 727
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 92 GYSDGEPGSARFDKPKSFAVDMKGN-IYVADKSNHVIRKI 130
G DG A F+ P+ A+ K N IYVAD NH+IRKI
Sbjct: 262 GRKDGRFSEAAFNSPQGVAI--KNNVIYVADTENHLIRKI 299
>sp|Q8NBF2|NHLC2_HUMAN NHL repeat-containing protein 2 OS=Homo sapiens GN=NHLRC2 PE=1 SV=1
Length = 726
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 92 GYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKI 130
G DG + F+ P+ A+ M IYVAD NH+IRKI
Sbjct: 267 GRKDGIFSESTFNSPQGVAI-MNNIIYVADTENHLIRKI 304
>sp|A4IF69|NHLC2_BOVIN NHL repeat-containing protein 2 OS=Bos taurus GN=NHLRC2 PE=2 SV=1
Length = 726
Score = 35.0 bits (79), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 92 GYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKI 130
G DG + F+ P+ A+ M IYVAD NH+IRKI
Sbjct: 267 GRKDGIFSESSFNSPQGVAI-MNNIIYVADTENHLIRKI 304
>sp|O70277|TRIM3_RAT Tripartite motif-containing protein 3 OS=Rattus norvegicus GN=Trim3
PE=1 SV=1
Length = 744
Score = 33.9 bits (76), Expect = 0.70, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 33/80 (41%), Gaps = 13/80 (16%)
Query: 79 ESVVKRLAGDGVQGYS-DGE---------PGSARFDKPKSFAVDMKGNIYVADKSNHVIR 128
E VV V+ YS DGE G+ +F+ P AVD GNI VAD N
Sbjct: 635 EIVVTDFHNHSVKVYSADGEFLFKFGSHGEGNGQFNAPTGVAVDSNGNIIVADWGN---S 691
Query: 129 KITNLDHGNQLIRQINLKPE 148
+I D + IN E
Sbjct: 692 RIQVFDSSGSFLSYINTSAE 711
>sp|Q9R1R2|TRIM3_MOUSE Tripartite motif-containing protein 3 OS=Mus musculus GN=Trim3 PE=1
SV=1
Length = 744
Score = 33.9 bits (76), Expect = 0.70, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 33/80 (41%), Gaps = 13/80 (16%)
Query: 79 ESVVKRLAGDGVQGYS-DGE---------PGSARFDKPKSFAVDMKGNIYVADKSNHVIR 128
E VV V+ YS DGE G+ +F+ P AVD GNI VAD N
Sbjct: 635 EIVVTDFHNHSVKVYSADGEFLFKFGSHGEGNGQFNAPTGVAVDSNGNIIVADWGN---S 691
Query: 129 KITNLDHGNQLIRQINLKPE 148
+I D + IN E
Sbjct: 692 RIQVFDSSGSFLSYINTSAE 711
>sp|O75382|TRIM3_HUMAN Tripartite motif-containing protein 3 OS=Homo sapiens GN=TRIM3 PE=1
SV=2
Length = 744
Score = 33.9 bits (76), Expect = 0.70, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 33/80 (41%), Gaps = 13/80 (16%)
Query: 79 ESVVKRLAGDGVQGYS-DGE---------PGSARFDKPKSFAVDMKGNIYVADKSNHVIR 128
E VV V+ YS DGE G+ +F+ P AVD GNI VAD N
Sbjct: 635 EIVVTDFHNHSVKVYSADGEFLFKFGSHGEGNGQFNAPTGVAVDSNGNIIVADWGN---S 691
Query: 129 KITNLDHGNQLIRQINLKPE 148
+I D + IN E
Sbjct: 692 RIQVFDSSGSFLSYINTSAE 711
>sp|F6QEU4|LIN41_XENTR E3 ubiquitin-protein ligase TRIM71 OS=Xenopus tropicalis GN=trim71
PE=3 SV=1
Length = 814
Score = 33.1 bits (74), Expect = 1.2, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 99 GSARFDKPKSFAVDMKGNIYVADKSNHVIR 128
G+ +F +P+ AVD +G I VAD NH ++
Sbjct: 736 GNGQFLRPQGVAVDQEGRIIVADSRNHRVQ 765
>sp|D3ZVM4|LIN41_RAT E3 ubiquitin-protein ligase TRIM71 OS=Rattus norvegicus GN=Trim71
PE=3 SV=1
Length = 855
Score = 33.1 bits (74), Expect = 1.2, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 99 GSARFDKPKSFAVDMKGNIYVADKSNHVIR 128
G+ +F +P+ AVD +G I VAD NH ++
Sbjct: 777 GNGQFLRPQGVAVDQEGRIIVADSRNHRVQ 806
Score = 31.6 bits (70), Expect = 3.1, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 98 PGSARFDKPKSFAVDMKGNIYVADKSNHVIRKIT 131
PG +FD+P A D I VADK NH I+ T
Sbjct: 637 PG--QFDRPAGVACDASRRIVVADKDNHRIQIFT 668
>sp|Q1PSW8|LIN41_MOUSE E3 ubiquitin-protein ligase TRIM71 OS=Mus musculus GN=Trim71 PE=1
SV=1
Length = 855
Score = 33.1 bits (74), Expect = 1.2, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 99 GSARFDKPKSFAVDMKGNIYVADKSNHVIR 128
G+ +F +P+ AVD +G I VAD NH ++
Sbjct: 777 GNGQFLRPQGVAVDQEGRIIVADSRNHRVQ 806
Score = 31.6 bits (70), Expect = 3.2, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 98 PGSARFDKPKSFAVDMKGNIYVADKSNHVIRKIT 131
PG +FD+P A D I VADK NH I+ T
Sbjct: 637 PG--QFDRPAGVACDASRRIIVADKDNHRIQIFT 668
>sp|Q2Q1W2|LIN41_HUMAN E3 ubiquitin-protein ligase TRIM71 OS=Homo sapiens GN=TRIM71 PE=1
SV=1
Length = 868
Score = 33.1 bits (74), Expect = 1.2, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 99 GSARFDKPKSFAVDMKGNIYVADKSNHVIR 128
G+ +F +P+ AVD +G I VAD NH ++
Sbjct: 790 GNGQFLRPQGVAVDQEGRIIVADSRNHRVQ 819
Score = 31.6 bits (70), Expect = 3.1, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 98 PGSARFDKPKSFAVDMKGNIYVADKSNHVIRKIT 131
PG +FD+P A D I VADK NH I+ T
Sbjct: 650 PG--QFDRPAGVACDASRRIVVADKDNHRIQIFT 681
>sp|Q1PRL4|LIN41_CHICK E3 ubiquitin-protein ligase TRIM71 OS=Gallus gallus GN=TRIM71 PE=2
SV=1
Length = 876
Score = 33.1 bits (74), Expect = 1.2, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 99 GSARFDKPKSFAVDMKGNIYVADKSNHVIR 128
G+ +F +P+ AVD +G I VAD NH ++
Sbjct: 798 GNGQFLRPQGVAVDQEGRIIVADSRNHRVQ 827
Score = 32.3 bits (72), Expect = 2.0, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 98 PGSARFDKPKSFAVDMKGNIYVADKSNHVIRKIT 131
PG +FD+P A D+ I VADK NH I+ T
Sbjct: 658 PG--QFDRPAGVACDVSRRIVVADKDNHRIQIFT 689
>sp|E1BJS7|LIN41_BOVIN E3 ubiquitin-protein ligase TRIM71 OS=Bos taurus GN=TRIM71 PE=3
SV=2
Length = 868
Score = 33.1 bits (74), Expect = 1.2, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 99 GSARFDKPKSFAVDMKGNIYVADKSNHVIR 128
G+ +F +P+ AVD +G I VAD NH ++
Sbjct: 790 GNGQFLRPQGVAVDQEGRIIVADSRNHRVQ 819
Score = 31.6 bits (70), Expect = 3.1, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 98 PGSARFDKPKSFAVDMKGNIYVADKSNHVIRKIT 131
PG +FD+P A D I VADK NH I+ T
Sbjct: 650 PG--QFDRPAGVACDASRRIVVADKDNHRIQIFT 681
>sp|Q8BZW8|NHLC2_MOUSE NHL repeat-containing protein 2 OS=Mus musculus GN=Nhlrc2 PE=2 SV=1
Length = 725
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 92 GYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKI 130
G DG + F+ P+ A+ IYVAD NH+IRKI
Sbjct: 267 GRKDGMFSESSFNSPQGVAI-ADNVIYVADTENHLIRKI 304
>sp|E7FAM5|LIN41_DANRE E3 ubiquitin-protein ligase TRIM71 OS=Danio rerio GN=trim71 PE=2
SV=1
Length = 824
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 97 EPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKIT 131
PG +FD+P A D + I VADK NH I+ T
Sbjct: 605 RPG--QFDRPAGVACDSQRRIIVADKDNHRIQIFT 637
>sp|D3ZQG6|TRIM2_RAT Tripartite motif-containing protein 2 OS=Rattus norvegicus GN=Trim2
PE=1 SV=2
Length = 744
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 94 SDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIR 128
S+GE G+ +F+ P AVD GNI VAD N I+
Sbjct: 661 SNGE-GNGQFNAPTGVAVDSNGNIIVADWGNSRIQ 694
>sp|D2GXS7|TRIM2_AILME Tripartite motif-containing protein 2 OS=Ailuropoda melanoleuca
GN=TRIM2 PE=3 SV=1
Length = 744
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 94 SDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIR 128
S+GE G+ +F+ P AVD GNI VAD N I+
Sbjct: 661 SNGE-GNGQFNAPTGVAVDSNGNIIVADWGNSRIQ 694
>sp|Q9ESN6|TRIM2_MOUSE Tripartite motif-containing protein 2 OS=Mus musculus GN=Trim2 PE=1
SV=1
Length = 744
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 94 SDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIR 128
S+GE G+ +F+ P AVD GNI VAD N I+
Sbjct: 661 SNGE-GNGQFNAPTGVAVDSNGNIIVADWGNSRIQ 694
>sp|F7H9X2|TRIM2_CALJA Tripartite motif-containing protein 2 OS=Callithrix jacchus
GN=TRIM2 PE=3 SV=1
Length = 744
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 94 SDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIR 128
S+GE G+ +F+ P AVD GNI VAD N I+
Sbjct: 661 SNGE-GNGQFNAPTGVAVDSNGNIIVADWGNSRIQ 694
>sp|Q9C040|TRIM2_HUMAN Tripartite motif-containing protein 2 OS=Homo sapiens GN=TRIM2 PE=1
SV=1
Length = 744
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 94 SDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIR 128
S+GE G+ +F+ P AVD GNI VAD N I+
Sbjct: 661 SNGE-GNGQFNAPTGVAVDSNGNIIVADWGNSRIQ 694
>sp|A4IF63|TRIM2_BOVIN Tripartite motif-containing protein 2 OS=Bos taurus GN=TRIM2 PE=2
SV=1
Length = 744
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 94 SDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIR 128
S+GE G+ +F+ P AVD GNI VAD N I+
Sbjct: 661 SNGE-GNGQFNAPTGVAVDSNGNIIVADWGNSRIQ 694
>sp|Q9W7R4|TEN3_DANRE Teneurin-3 OS=Danio rerio GN=tenm3 PE=2 SV=1
Length = 2590
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 95 DGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKI 130
DG AR + P S V G +YVAD N IR I
Sbjct: 1353 DGYAKDARLNAPSSLVVSPDGTLYVADLGNIRIRAI 1388
>sp|Q9U489|LIN41_CAEEL Protein lin-41 OS=Caenorhabditis elegans GN=lin-41 PE=2 SV=1
Length = 1147
Score = 31.2 bits (69), Expect = 3.8, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 92 GYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIR 128
G S PG +FD+P + NI VADK NH ++
Sbjct: 883 GTSGNRPG--QFDRPAGITTNSLNNIVVADKDNHRVQ 917
>sp|P57848|DXS_PASMU 1-deoxy-D-xylulose-5-phosphate synthase OS=Pasteurella multocida
(strain Pm70) GN=dxs PE=3 SV=1
Length = 614
Score = 31.2 bits (69), Expect = 4.5, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 56/143 (39%), Gaps = 28/143 (19%)
Query: 6 VYSSLAITLLSLLFSLVSSGLLLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSS 65
V +AI L +LF++ +G++ DG T D L P+ VI P +
Sbjct: 399 VIHDVAIQNLPVLFAIDRAGVVGADGQTHQGAFDISFLRCIPNMVIMTPSDE-----NEC 453
Query: 66 RSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH 125
R YT GY +P + R+ + + V++ +A ++
Sbjct: 454 RQMLYT--------------------GYKLNQPAAVRYPRGNAIGVELTPLTMLALGKSN 493
Query: 126 VIR---KITNLDHGNQLIRQINL 145
+IR KI L+ G L IN+
Sbjct: 494 LIREGEKIAILNFGTLLPTAINV 516
>sp|Q9WTS4|TEN1_MOUSE Teneurin-1 OS=Mus musculus GN=Tenm1 PE=1 SV=1
Length = 2731
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 85 LAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKIT-NLDHGNQL 139
+GDG GY+ A+ P S AV G +YVAD N IR I+ N H N +
Sbjct: 1488 FSGDG--GYAK----DAKMKAPSSLAVSPDGTLYVADLGNVRIRTISKNQAHLNDM 1537
>sp|Q9UKZ4|TEN1_HUMAN Teneurin-1 OS=Homo sapiens GN=TENM1 PE=1 SV=2
Length = 2725
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 85 LAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKIT-NLDHGNQL 139
+GDG GY+ A+ P S AV G +YVAD N IR I+ N H N +
Sbjct: 1482 FSGDG--GYAK----DAKMKAPSSLAVSPDGTLYVADLGNVRIRTISRNQAHLNDM 1531
>sp|Q9V4M2|WECH_DROME Protein wech OS=Drosophila melanogaster GN=wech PE=1 SV=2
Length = 832
Score = 30.8 bits (68), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 89 GVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKIT 131
G +G +GE FD P VD+ I V DK NH ++ T
Sbjct: 588 GRKGVGNGE-----FDLPAGICVDVDNRIIVVDKDNHRVQIFT 625
>sp|Q0AZE2|DXS_SYNWW 1-deoxy-D-xylulose-5-phosphate synthase OS=Syntrophomonas wolfei
subsp. wolfei (strain Goettingen) GN=dxs PE=3 SV=1
Length = 638
Score = 30.4 bits (67), Expect = 7.7, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 7/101 (6%)
Query: 6 VYSSLAITLLSLLFSLVSSGLLLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSS 65
+ +A+ L ++F++ +GL+ EDG T D L P+ +I P + +V D
Sbjct: 399 IVHDVALQKLPVIFAIDRAGLVGEDGPTHHGAFDFSYLRHIPNLIIMAPADENELV-DML 457
Query: 66 RSAFYTLSFPLSEESVVKRLAGDGVQGYSDG---EPGSARF 103
SAF ++ P++ R G+GV+ S+ EPG +R
Sbjct: 458 HSAF-SMEGPVAIR--YPRGVGEGVRIKSERQLLEPGQSRL 495
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,829,783
Number of Sequences: 539616
Number of extensions: 2711606
Number of successful extensions: 7641
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 7559
Number of HSP's gapped (non-prelim): 98
length of query: 191
length of database: 191,569,459
effective HSP length: 111
effective length of query: 80
effective length of database: 131,672,083
effective search space: 10533766640
effective search space used: 10533766640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)