Query 029556
Match_columns 191
No_of_seqs 174 out of 1333
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 14:48:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029556.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029556hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02919 haloacid dehalogenase 99.5 8.8E-13 1.9E-17 129.7 13.8 89 44-136 803-891 (1057)
2 PLN02919 haloacid dehalogenase 99.4 6.6E-12 1.4E-16 123.5 13.0 94 44-141 567-662 (1057)
3 PF08450 SGL: SMP-30/Gluconola 99.3 8.9E-11 1.9E-15 97.0 14.7 114 33-164 125-243 (246)
4 KOG4659 Uncharacterized conser 99.2 7.6E-11 1.6E-15 114.4 11.8 115 18-134 370-503 (1899)
5 COG3386 Gluconolactonase [Carb 99.1 5.8E-09 1.3E-13 90.2 14.9 125 22-166 141-275 (307)
6 PF01436 NHL: NHL repeat; Int 98.9 1.1E-09 2.4E-14 61.8 3.9 28 103-130 1-28 (28)
7 PF08450 SGL: SMP-30/Gluconola 98.7 9.4E-07 2E-11 72.9 16.4 83 33-134 71-165 (246)
8 KOG4659 Uncharacterized conser 98.6 2.8E-07 6.1E-12 90.3 11.6 86 45-132 593-690 (1899)
9 PF01436 NHL: NHL repeat; Int 98.6 1.7E-07 3.6E-12 52.8 5.0 27 45-72 2-28 (28)
10 KOG4499 Ca2+-binding protein R 98.4 5.6E-06 1.2E-10 69.1 11.8 99 45-154 158-263 (310)
11 PF03088 Str_synth: Strictosid 98.3 7.2E-06 1.6E-10 58.6 8.8 69 48-133 1-87 (89)
12 COG4257 Vgb Streptogramin lyas 97.8 8.8E-05 1.9E-09 63.3 8.2 75 45-138 62-137 (353)
13 TIGR02604 Piru_Ver_Nterm putat 97.7 0.00046 1E-08 60.8 11.8 81 31-131 1-96 (367)
14 COG4257 Vgb Streptogramin lyas 97.7 0.0017 3.7E-08 55.5 14.2 86 45-135 104-220 (353)
15 PF10282 Lactonase: Lactonase, 97.7 0.0033 7.1E-08 54.8 16.1 90 43-136 85-177 (345)
16 COG3386 Gluconolactonase [Carb 97.6 0.0009 1.9E-08 58.0 11.2 72 44-133 110-193 (307)
17 PF10282 Lactonase: Lactonase, 97.5 0.0024 5.2E-08 55.7 13.2 95 45-151 245-343 (345)
18 TIGR02604 Piru_Ver_Nterm putat 97.5 0.001 2.3E-08 58.5 10.2 70 45-132 124-212 (367)
19 COG3391 Uncharacterized conser 97.4 0.0013 2.7E-08 58.4 9.9 73 45-134 116-191 (381)
20 PF06977 SdiA-regulated: SdiA- 97.4 0.0019 4.1E-08 54.4 9.9 78 44-130 170-247 (248)
21 KOG1520 Predicted alkaloid syn 97.2 0.0026 5.7E-08 56.3 9.8 67 45-124 115-181 (376)
22 KOG1214 Nidogen and related ba 97.2 0.0026 5.6E-08 61.1 10.0 75 44-134 1067-1144(1289)
23 PF05787 DUF839: Bacterial pro 97.2 0.0027 5.9E-08 58.8 10.0 84 43-126 348-459 (524)
24 PRK11028 6-phosphogluconolacto 97.1 0.014 2.9E-07 50.0 13.2 79 45-133 126-205 (330)
25 COG3391 Uncharacterized conser 97.0 0.024 5.1E-07 50.3 13.3 81 45-137 160-243 (381)
26 PF01731 Arylesterase: Arylest 96.9 0.0047 1E-07 43.8 6.9 52 20-74 32-83 (86)
27 COG3211 PhoX Predicted phospha 96.9 0.0069 1.5E-07 56.2 9.5 80 44-123 416-519 (616)
28 PRK11028 6-phosphogluconolacto 96.9 0.03 6.5E-07 47.9 12.9 77 45-134 80-157 (330)
29 TIGR02658 TTQ_MADH_Hv methylam 96.8 0.081 1.8E-06 46.8 15.0 96 45-152 47-153 (352)
30 PF03088 Str_synth: Strictosid 96.7 0.006 1.3E-07 43.6 5.8 53 19-74 32-86 (89)
31 TIGR03866 PQQ_ABC_repeats PQQ- 96.5 0.34 7.4E-06 39.4 16.2 96 18-134 5-104 (300)
32 TIGR03606 non_repeat_PQQ dehyd 96.4 0.051 1.1E-06 49.6 11.8 94 27-133 15-124 (454)
33 smart00135 LY Low-density lipo 96.4 0.019 4.1E-07 33.9 5.9 31 44-74 8-38 (43)
34 TIGR03866 PQQ_ABC_repeats PQQ- 96.3 0.12 2.7E-06 42.1 12.5 81 46-145 208-289 (300)
35 PF13449 Phytase-like: Esteras 96.2 0.098 2.1E-06 45.4 12.0 88 47-135 22-122 (326)
36 PF03022 MRJP: Major royal jel 96.1 0.029 6.3E-07 48.1 8.2 64 46-121 187-253 (287)
37 KOG1520 Predicted alkaloid syn 96.1 0.012 2.5E-07 52.2 5.6 88 18-121 193-282 (376)
38 smart00135 LY Low-density lipo 96.1 0.018 3.9E-07 34.0 4.9 34 102-135 7-41 (43)
39 TIGR02658 TTQ_MADH_Hv methylam 95.9 0.16 3.6E-06 44.9 11.8 80 45-143 245-338 (352)
40 PF02239 Cytochrom_D1: Cytochr 95.8 0.11 2.4E-06 46.1 10.7 99 15-135 7-110 (369)
41 PF07995 GSDH: Glucose / Sorbo 95.5 0.086 1.9E-06 45.9 8.5 69 45-129 253-331 (331)
42 COG2706 3-carboxymuconate cycl 95.4 1.8 3.9E-05 38.1 16.8 128 44-184 88-221 (346)
43 PF02333 Phytase: Phytase; In 95.3 0.57 1.2E-05 41.9 13.2 80 45-134 208-291 (381)
44 KOG1214 Nidogen and related ba 95.3 0.079 1.7E-06 51.4 7.9 77 45-137 1025-1102(1289)
45 PF00058 Ldl_recept_b: Low-den 95.2 0.095 2E-06 31.8 5.6 40 57-113 1-42 (42)
46 PF07995 GSDH: Glucose / Sorbo 95.0 0.23 5E-06 43.2 9.7 77 45-134 2-91 (331)
47 PF13449 Phytase-like: Esteras 94.6 2 4.3E-05 37.2 14.6 70 46-121 86-165 (326)
48 PF01731 Arylesterase: Arylest 94.4 0.093 2E-06 37.2 4.7 32 102-133 52-84 (86)
49 KOG4499 Ca2+-binding protein R 94.4 0.12 2.6E-06 43.6 6.0 35 45-83 212-246 (310)
50 PF03022 MRJP: Major royal jel 93.8 0.97 2.1E-05 38.7 10.8 83 46-140 2-103 (287)
51 PF06739 SBBP: Beta-propeller 93.5 0.07 1.5E-06 31.9 2.3 20 105-124 14-33 (38)
52 TIGR02276 beta_rpt_yvtn 40-res 93.5 0.65 1.4E-05 27.1 6.7 21 54-74 1-21 (42)
53 TIGR03032 conserved hypothetic 93.3 0.37 8E-06 42.1 7.2 38 45-87 203-240 (335)
54 COG3204 Uncharacterized protei 93.0 0.58 1.3E-05 40.5 7.9 74 48-132 236-311 (316)
55 COG2706 3-carboxymuconate cycl 92.9 4.7 0.0001 35.6 13.6 117 45-176 145-264 (346)
56 PF02333 Phytase: Phytase; In 92.8 1.1 2.4E-05 40.1 9.8 77 45-133 156-237 (381)
57 COG2133 Glucose/sorbosone dehy 92.1 0.95 2.1E-05 40.8 8.4 78 45-134 314-398 (399)
58 PF14269 Arylsulfotran_2: Aryl 91.8 4.2 9.1E-05 35.1 12.0 93 45-144 144-251 (299)
59 TIGR03118 PEPCTERM_chp_1 conse 90.9 6.2 0.00013 34.5 11.9 73 45-134 189-280 (336)
60 PF06977 SdiA-regulated: SdiA- 89.4 6.4 0.00014 33.1 10.7 73 45-133 22-94 (248)
61 PRK02888 nitrous-oxide reducta 88.7 2.1 4.6E-05 40.7 7.9 78 45-133 321-404 (635)
62 TIGR03606 non_repeat_PQQ dehyd 87.9 1.1 2.3E-05 41.1 5.4 34 102-135 28-61 (454)
63 PF06739 SBBP: Beta-propeller 87.7 1.3 2.8E-05 26.3 3.9 20 45-65 13-32 (38)
64 PF02239 Cytochrom_D1: Cytochr 87.2 21 0.00045 31.6 14.6 30 45-74 78-107 (369)
65 TIGR03032 conserved hypothetic 86.3 23 0.00049 31.2 13.3 95 46-143 104-241 (335)
66 PF00058 Ldl_recept_b: Low-den 85.8 2.9 6.2E-05 25.2 4.9 30 115-144 1-31 (42)
67 PRK02888 nitrous-oxide reducta 85.6 26 0.00057 33.5 13.3 31 104-134 321-352 (635)
68 PF05096 Glu_cyclase_2: Glutam 85.6 18 0.0004 30.8 11.3 68 45-134 90-158 (264)
69 PF05935 Arylsulfotrans: Aryls 85.6 8.1 0.00017 35.4 9.9 78 45-126 271-370 (477)
70 KOG3567 Peptidylglycine alpha- 85.0 1.7 3.7E-05 39.7 5.0 36 100-135 463-498 (501)
71 smart00284 OLF Olfactomedin-li 83.1 11 0.00024 32.0 8.9 82 48-134 77-162 (255)
72 COG4247 Phy 3-phytase (myo-ino 82.6 15 0.00032 31.7 9.3 29 105-134 206-235 (364)
73 COG3204 Uncharacterized protei 78.0 33 0.00072 29.9 10.1 102 16-132 101-211 (316)
74 PF05096 Glu_cyclase_2: Glutam 76.2 17 0.00037 31.0 7.9 78 46-139 131-209 (264)
75 TIGR02276 beta_rpt_yvtn 40-res 76.0 12 0.00027 21.4 5.6 30 115-146 4-33 (42)
76 PRK11138 outer membrane biogen 72.7 66 0.0014 28.2 11.5 30 114-146 335-364 (394)
77 PF07494 Reg_prop: Two compone 70.8 4.8 0.0001 21.2 2.2 17 105-121 6-22 (24)
78 COG3823 Glutamine cyclotransfe 70.5 43 0.00092 28.1 8.6 61 56-121 185-247 (262)
79 COG4247 Phy 3-phytase (myo-ino 69.7 58 0.0012 28.2 9.4 59 15-74 169-233 (364)
80 KOG0283 WD40 repeat-containing 69.1 37 0.0008 33.0 9.1 73 46-135 411-483 (712)
81 TIGR03118 PEPCTERM_chp_1 conse 67.7 23 0.00049 31.1 6.8 35 99-133 18-52 (336)
82 PRK10123 wcaM putative colanic 67.7 31 0.00067 30.2 7.5 108 48-178 196-305 (464)
83 KOG1446 Histone H3 (Lys4) meth 66.7 89 0.0019 27.3 10.6 91 47-152 190-282 (311)
84 PF02191 OLF: Olfactomedin-lik 66.5 78 0.0017 26.6 12.3 81 49-134 73-157 (250)
85 PF13360 PQQ_2: PQQ-like domai 58.5 36 0.00078 26.8 6.2 65 51-135 32-96 (238)
86 KOG1215 Low-density lipoprotei 56.3 88 0.0019 30.8 9.5 73 45-134 480-555 (877)
87 PTZ00421 coronin; Provisional 54.0 1.7E+02 0.0037 27.0 10.5 71 47-134 128-199 (493)
88 PTZ00420 coronin; Provisional 53.7 1.7E+02 0.0037 27.7 10.5 72 46-134 127-198 (568)
89 PF15416 DUF4623: Domain of un 51.8 94 0.002 27.9 7.8 82 45-133 183-271 (442)
90 PRK04792 tolB translocation pr 50.3 1.9E+02 0.0042 26.0 12.8 43 29-74 205-249 (448)
91 KOG1408 WD40 repeat protein [F 48.0 2.2E+02 0.0047 28.3 10.1 72 46-132 598-670 (1080)
92 KOG0266 WD40 repeat-containing 47.1 2.2E+02 0.0048 25.7 13.7 74 45-136 247-321 (456)
93 PF05787 DUF839: Bacterial pro 45.3 29 0.00063 32.4 4.0 36 100-135 346-401 (524)
94 PF13360 PQQ_2: PQQ-like domai 43.9 1.6E+02 0.0034 23.1 9.7 67 55-135 75-142 (238)
95 KOG1215 Low-density lipoprotei 43.4 3.2E+02 0.0068 27.0 11.1 74 46-135 438-512 (877)
96 KOG3567 Peptidylglycine alpha- 42.7 35 0.00077 31.5 4.0 70 45-123 168-238 (501)
97 COG5341 Uncharacterized protei 42.5 1.5E+02 0.0032 22.5 7.4 63 5-72 20-84 (132)
98 PF13570 PQQ_3: PQQ-like domai 42.5 55 0.0012 18.8 3.7 24 108-133 16-39 (40)
99 COG2133 Glucose/sorbosone dehy 42.0 77 0.0017 28.7 6.1 29 45-74 367-396 (399)
100 KOG3545 Olfactomedin and relat 40.6 2.3E+02 0.0049 24.1 8.5 71 56-132 77-154 (249)
101 PF07433 DUF1513: Protein of u 39.7 2.6E+02 0.0056 24.4 9.4 26 48-74 55-84 (305)
102 PF07433 DUF1513: Protein of u 39.5 2.4E+02 0.0051 24.7 8.5 70 45-134 217-286 (305)
103 KOG4378 Nuclear protein COP1 [ 39.1 1.6E+02 0.0035 27.8 7.6 70 45-132 208-279 (673)
104 PRK02889 tolB translocation pr 38.4 2.9E+02 0.0062 24.6 12.7 52 29-86 183-236 (427)
105 KOG0266 WD40 repeat-containing 37.8 3.1E+02 0.0067 24.8 12.9 71 47-134 206-277 (456)
106 PF00400 WD40: WD domain, G-be 37.7 72 0.0016 17.5 3.7 27 105-131 13-39 (39)
107 PRK03629 tolB translocation pr 35.8 3.2E+02 0.0069 24.4 13.5 50 30-85 187-238 (429)
108 KOG0263 Transcription initiati 34.9 2.4E+02 0.0052 27.5 8.3 71 46-134 579-650 (707)
109 PRK05137 tolB translocation pr 34.0 3.4E+02 0.0073 24.1 12.6 43 29-74 189-233 (435)
110 KOG0291 WD40-repeat-containing 32.6 5.1E+02 0.011 25.8 10.9 69 48-134 439-509 (893)
111 KOG1446 Histone H3 (Lys4) meth 32.1 3.5E+02 0.0076 23.7 15.1 43 29-75 88-130 (311)
112 PRK01742 tolB translocation pr 32.1 3.6E+02 0.0079 23.9 13.3 50 30-85 192-243 (429)
113 KOG0641 WD40 repeat protein [G 32.0 3.2E+02 0.007 23.3 7.9 28 106-133 234-272 (350)
114 KOG2055 WD40 repeat protein [G 31.4 4.4E+02 0.0094 24.6 12.5 42 113-154 364-406 (514)
115 PF05474 Semenogelin: Semenoge 29.6 27 0.00058 32.4 1.1 13 1-13 1-15 (582)
116 TIGR03656 IsdC heme uptake pro 29.5 1.1E+02 0.0024 25.4 4.6 40 25-66 26-75 (217)
117 KOG0291 WD40-repeat-containing 29.5 5.8E+02 0.013 25.4 12.9 98 49-168 19-117 (893)
118 KOG0268 Sof1-like rRNA process 29.3 82 0.0018 28.4 4.0 75 44-134 229-303 (433)
119 smart00108 B_lectin Bulb-type 28.7 2.2E+02 0.0047 20.2 8.0 21 105-125 86-106 (114)
120 PRK04922 tolB translocation pr 28.6 4.2E+02 0.0091 23.5 12.4 36 48-86 207-244 (433)
121 PRK00178 tolB translocation pr 28.2 4.1E+02 0.009 23.3 13.4 50 30-85 187-238 (430)
122 PF11466 Doppel: Prion-like pr 27.8 8.9 0.00019 21.6 -1.4 24 1-24 1-24 (30)
123 TIGR03300 assembly_YfgL outer 27.4 4E+02 0.0086 22.8 13.3 78 48-147 273-350 (377)
124 PRK12690 flgF flagellar basal 26.7 3.4E+02 0.0073 22.6 7.2 79 45-132 76-161 (238)
125 KOG0318 WD40 repeat stress pro 26.7 5.6E+02 0.012 24.3 15.7 86 45-146 191-276 (603)
126 KOG0292 Vesicle coat complex C 26.6 7.1E+02 0.015 25.5 10.1 94 44-142 250-357 (1202)
127 TIGR02800 propeller_TolB tol-p 26.1 4.3E+02 0.0093 22.8 12.6 50 30-85 178-229 (417)
128 TIGR02695 azurin azurin. Azuri 25.9 32 0.00069 26.1 0.8 11 180-190 105-115 (125)
129 smart00564 PQQ beta-propeller 25.7 1.2E+02 0.0025 16.1 3.2 22 113-135 5-26 (33)
130 KOG0316 Conserved WD40 repeat- 25.7 3E+02 0.0064 23.6 6.5 34 101-134 180-214 (307)
131 PF09284 RhgB_N: Rhamnogalactu 25.1 4.3E+02 0.0092 22.4 7.4 71 114-184 6-81 (249)
132 COG3241 Azurin [Energy product 24.7 46 0.001 25.3 1.5 11 180-190 129-139 (151)
133 PF05694 SBP56: 56kDa selenium 24.5 5.7E+02 0.012 23.7 9.1 75 46-121 313-392 (461)
134 KOG2110 Uncharacterized conser 24.5 5.3E+02 0.011 23.3 10.7 75 46-134 175-249 (391)
135 PRK03629 tolB translocation pr 24.4 5.1E+02 0.011 23.1 13.8 35 48-85 246-282 (429)
136 PF01011 PQQ: PQQ enzyme repea 24.4 1.5E+02 0.0032 16.8 4.1 27 57-87 1-27 (38)
137 PRK12818 flgG flagellar basal 23.2 4.5E+02 0.0097 22.0 7.6 72 44-119 89-166 (256)
138 KOG1407 WD40 repeat protein [F 22.6 5.1E+02 0.011 22.5 10.8 29 104-132 148-176 (313)
139 PRK11138 outer membrane biogen 22.0 5.3E+02 0.011 22.4 11.4 59 56-135 256-314 (394)
140 PF07202 Tcp10_C: T-complex pr 21.5 4.3E+02 0.0093 21.1 10.4 33 18-50 31-66 (179)
141 PF11768 DUF3312: Protein of u 21.4 3E+02 0.0064 26.1 6.3 32 45-77 300-331 (545)
No 1
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.45 E-value=8.8e-13 Score=129.66 Aligned_cols=89 Identities=27% Similarity=0.403 Sum_probs=80.6
Q ss_pred CCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCC
Q 029556 44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS 123 (191)
Q Consensus 44 ~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~ 123 (191)
+.+|.+++++ ++|++||+|..||+|++++. .++.+.+++|.+..|+.||....++|+.|.||++|++|++||+|+.
T Consensus 803 l~~P~Gvavd-~dG~LYVADs~N~rIrviD~---~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~ 878 (1057)
T PLN02919 803 LQHPLGVLCA-KDGQIYVADSYNHKIKKLDP---ATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN 878 (1057)
T ss_pred ccCCceeeEe-CCCcEEEEECCCCEEEEEEC---CCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC
Confidence 5689999995 78899999999999999995 4678899999888888888888999999999999999999999999
Q ss_pred CCEEEEEeCCCCC
Q 029556 124 NHVIRKITNLDHG 136 (191)
Q Consensus 124 n~rIr~i~~~~~~ 136 (191)
|++||+++...+.
T Consensus 879 Nn~Irvid~~~~~ 891 (1057)
T PLN02919 879 NSLIRYLDLNKGE 891 (1057)
T ss_pred CCEEEEEECCCCc
Confidence 9999999986643
No 2
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.36 E-value=6.6e-12 Score=123.55 Aligned_cols=94 Identities=24% Similarity=0.378 Sum_probs=78.7
Q ss_pred CCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecC-CCccCCCCCCcccccCCCceEEEcCCCC-EEEEe
Q 029556 44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGD-GVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVAD 121 (191)
Q Consensus 44 ~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~-~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD 121 (191)
+..|.++++++.++++||+|+++|||++++. +|.+...+|. +..|..||....++|+.|.||++|++|+ |||||
T Consensus 567 l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~----~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaD 642 (1057)
T PLN02919 567 LKFPGKLAIDLLNNRLFISDSNHNRIVVTDL----DGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVAD 642 (1057)
T ss_pred CCCCceEEEECCCCeEEEEECCCCeEEEEeC----CCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEe
Confidence 4789999997568999999999999999984 6666655554 6677778888889999999999998866 89999
Q ss_pred CCCCEEEEEeCCCCCceEEE
Q 029556 122 KSNHVIRKITNLDHGNQLIR 141 (191)
Q Consensus 122 ~~n~rIr~i~~~~~~~~~i~ 141 (191)
+.|++||+++..++..+++.
T Consensus 643 t~n~~Ir~id~~~~~V~tla 662 (1057)
T PLN02919 643 TENHALREIDFVNETVRTLA 662 (1057)
T ss_pred CCCceEEEEecCCCEEEEEe
Confidence 99999999998776555554
No 3
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.30 E-value=8.9e-11 Score=97.00 Aligned_cols=114 Identities=26% Similarity=0.344 Sum_probs=78.3
Q ss_pred EEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCC--ceEEEEecCCCccCCCCCCcccccCCCceEE
Q 029556 33 TVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEE--SVVKRLAGDGVQGYSDGEPGSARFDKPKSFA 110 (191)
Q Consensus 33 ~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~--g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIa 110 (191)
.++.+.++. ..|+||++++++..|||+|+.+++|++++++.... .....++.... ....|.|++
T Consensus 125 ~~~~~~~~~---~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----------~~g~pDG~~ 190 (246)
T PF08450_consen 125 KVTVVADGL---GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG-----------GPGYPDGLA 190 (246)
T ss_dssp EEEEEEEEE---SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS-----------SSCEEEEEE
T ss_pred eEEEEecCc---ccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCC-----------CCcCCCcce
Confidence 555555544 48999999877778999999999999999743211 12333432210 113699999
Q ss_pred EcCCCCEEEEeCCCCEEEEEeCCCCCceEEEEeccC---CCceEeccCCCCccEEEE
Q 029556 111 VDMKGNIYVADKSNHVIRKITNLDHGNQLIRQINLK---PEDCSKSSQSGSGMFWVT 164 (191)
Q Consensus 111 vD~~G~iyVaD~~n~rIr~i~~~~~~~~~i~~i~~~---~~~~~~~~~~g~~~~~~~ 164 (191)
+|++|+||+|++.+++|+++++++ +.++.+.++ ++.|++... ....+|+.
T Consensus 191 vD~~G~l~va~~~~~~I~~~~p~G---~~~~~i~~p~~~~t~~~fgg~-~~~~L~vT 243 (246)
T PF08450_consen 191 VDSDGNLWVADWGGGRIVVFDPDG---KLLREIELPVPRPTNCAFGGP-DGKTLYVT 243 (246)
T ss_dssp EBTTS-EEEEEETTTEEEEEETTS---CEEEEEE-SSSSEEEEEEEST-TSSEEEEE
T ss_pred EcCCCCEEEEEcCCCEEEEECCCc---cEEEEEcCCCCCEEEEEEECC-CCCEEEEE
Confidence 999999999999999999999986 466666666 456777432 33355554
No 4
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=99.23 E-value=7.6e-11 Score=114.39 Aligned_cols=115 Identities=25% Similarity=0.290 Sum_probs=91.2
Q ss_pred eeeccCccEEecCCcEEEEEE-cCcc---------CCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCC--CCCceEEEE
Q 029556 18 LFSLVSSGLLLEDGYTVTTVI-DGHQ---------LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPL--SEESVVKRL 85 (191)
Q Consensus 18 ~~~~~~g~l~~~dGy~~~~~~-~G~~---------~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~--~~~g~v~~~ 85 (191)
|+..|+|+|+..|--.++++. +|+. ...+-+.||++|-+|.|||+|+..++|+|+..-. ++.++..++
T Consensus 370 la~a~DGSl~VGDfNyIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evv 449 (1899)
T KOG4659|consen 370 LAYAPDGSLIVGDFNYIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVV 449 (1899)
T ss_pred EEEcCCCcEEEccchheeeecCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEE
Confidence 467899999888766666554 3432 2356799999999999999999999999996422 123678999
Q ss_pred ecCCC------ccCCCCCC-cccccCCCceEEEcCCCCEEEEeCCCCEEEEEeCCC
Q 029556 86 AGDGV------QGYSDGEP-GSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLD 134 (191)
Q Consensus 86 aG~~~------~G~~DG~~-~~a~f~~P~gIavD~~G~iyVaD~~n~rIr~i~~~~ 134 (191)
||.|. ..+.||.. .+|+|..|.||++|+.|++|+||. .+||++|..+
T Consensus 450 aG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~lYfaD~--t~IR~iD~~g 503 (1899)
T KOG4659|consen 450 AGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNLYFADG--TRIRVIDTTG 503 (1899)
T ss_pred eccCcCccccccccCcchhcccceeccCCceeEccCCcEEEecc--cEEEEeccCc
Confidence 99875 22568876 789999999999999999999996 5799999854
No 5
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.06 E-value=5.8e-09 Score=90.17 Aligned_cols=125 Identities=20% Similarity=0.283 Sum_probs=82.3
Q ss_pred cCccE-Eec-CCcEEEEEEcC-ccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCC---CCCceEEEEecCCCccCCC
Q 029556 22 VSSGL-LLE-DGYTVTTVIDG-HQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPL---SEESVVKRLAGDGVQGYSD 95 (191)
Q Consensus 22 ~~g~l-~~~-dGy~~~~~~~G-~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~---~~~g~v~~~aG~~~~G~~D 95 (191)
+.|.+ ++. +| ...++..+ .. .|+|||++|++..+|++|+..++|++++.+. ...+....+.-.. .+
T Consensus 141 ~~G~lyr~~p~g-~~~~l~~~~~~---~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~----~~ 212 (307)
T COG3386 141 PTGSLYRVDPDG-GVVRLLDDDLT---IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDE----EP 212 (307)
T ss_pred CcceEEEEcCCC-CEEEeecCcEE---ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccC----CC
Confidence 34556 333 44 44444433 44 8999999977779999999999999998752 1122211111111 12
Q ss_pred CCCcccccCCCceEEEcCCCCEEE-EeCCCCEEEEEeCCCCCceEEEEeccC---CCceEeccCCCCccEEEEEe
Q 029556 96 GEPGSARFDKPKSFAVDMKGNIYV-ADKSNHVIRKITNLDHGNQLIRQINLK---PEDCSKSSQSGSGMFWVTVF 166 (191)
Q Consensus 96 G~~~~a~f~~P~gIavD~~G~iyV-aD~~n~rIr~i~~~~~~~~~i~~i~~~---~~~~~~~~~~g~~~~~~~~~ 166 (191)
| .|+|+++|++|++|+ +-++..+|.+++|++ ..+..+.+| ++.|++.... +..+++.+.
T Consensus 213 G--------~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG---~l~~~i~lP~~~~t~~~FgG~~-~~~L~iTs~ 275 (307)
T COG3386 213 G--------LPDGMAVDADGNLWVAAVWGGGRVVRFNPDG---KLLGEIKLPVKRPTNPAFGGPD-LNTLYITSA 275 (307)
T ss_pred C--------CCCceEEeCCCCEEEecccCCceEEEECCCC---cEEEEEECCCCCCccceEeCCC-cCEEEEEec
Confidence 2 799999999999995 445456999999985 567777777 4667776543 345555543
No 6
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=98.95 E-value=1.1e-09 Score=61.79 Aligned_cols=28 Identities=50% Similarity=0.837 Sum_probs=26.5
Q ss_pred cCCCceEEEcCCCCEEEEeCCCCEEEEE
Q 029556 103 FDKPKSFAVDMKGNIYVADKSNHVIRKI 130 (191)
Q Consensus 103 f~~P~gIavD~~G~iyVaD~~n~rIr~i 130 (191)
|+.|+|||+|++|+|||||++||||+++
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 6789999999999999999999999986
No 7
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.74 E-value=9.4e-07 Score=72.93 Aligned_cols=83 Identities=25% Similarity=0.272 Sum_probs=63.3
Q ss_pred EEEEEEcC---ccCCCCeeeEEEecCCCeEEEEeCCC--------CeEEEEecCCCCCceEEEEecCCCccCCCCCCccc
Q 029556 33 TVTTVIDG---HQLEINPHSVIDRPGSSDLIVLDSSR--------SAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSA 101 (191)
Q Consensus 33 ~~~~~~~G---~~~~~~P~gIav~d~~g~lyVaD~~n--------~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a 101 (191)
.++.+.+. ......|++++++ ++|++|++|... .++++++. ++++.....
T Consensus 71 ~~~~~~~~~~~~~~~~~~ND~~vd-~~G~ly~t~~~~~~~~~~~~g~v~~~~~----~~~~~~~~~-------------- 131 (246)
T PF08450_consen 71 KVTVLADLPDGGVPFNRPNDVAVD-PDGNLYVTDSGGGGASGIDPGSVYRIDP----DGKVTVVAD-------------- 131 (246)
T ss_dssp EEEEEEEEETTCSCTEEEEEEEE--TTS-EEEEEECCBCTTCGGSEEEEEEET----TSEEEEEEE--------------
T ss_pred cEEEEeeccCCCcccCCCceEEEc-CCCCEEEEecCCCccccccccceEEECC----CCeEEEEec--------------
Confidence 55555542 2246799999995 889999999877 56899874 566666542
Q ss_pred ccCCCceEEEcCCCC-EEEEeCCCCEEEEEeCCC
Q 029556 102 RFDKPKSFAVDMKGN-IYVADKSNHVIRKITNLD 134 (191)
Q Consensus 102 ~f~~P~gIavD~~G~-iyVaD~~n~rIr~i~~~~ 134 (191)
.+..|+||+++++|. +|++|+.+++|++++...
T Consensus 132 ~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~ 165 (246)
T PF08450_consen 132 GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDA 165 (246)
T ss_dssp EESSEEEEEEETTSSEEEEEETTTTEEEEEEEET
T ss_pred CcccccceEECCcchheeecccccceeEEEeccc
Confidence 367899999999985 999999999999999853
No 8
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=98.63 E-value=2.8e-07 Score=90.28 Aligned_cols=86 Identities=23% Similarity=0.377 Sum_probs=72.2
Q ss_pred CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCC------cc----C--CCCCCcccccCCCceEEEc
Q 029556 45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGV------QG----Y--SDGEPGSARFDKPKSFAVD 112 (191)
Q Consensus 45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~------~G----~--~DG~~~~a~f~~P~gIavD 112 (191)
-.|+.|++. ..|.|||+++...||-++. .++.||++..++|..+ .+ + .|+.+++|+|+.|..+|+.
T Consensus 593 ~~~r~Iavg-~~G~lyvaEsD~rriNrvr-~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVs 670 (1899)
T KOG4659|consen 593 LIQRDIAVG-TDGALYVAESDGRRINRVR-KLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVS 670 (1899)
T ss_pred hhhhceeec-CCceEEEEeccchhhhheE-EeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEEC
Confidence 457999996 8999999999997777765 3457899999999854 11 1 2455689999999999999
Q ss_pred CCCCEEEEeCCCCEEEEEeC
Q 029556 113 MKGNIYVADKSNHVIRKITN 132 (191)
Q Consensus 113 ~~G~iyVaD~~n~rIr~i~~ 132 (191)
++|.+||||.+|.|||++..
T Consensus 671 Pdg~v~IAD~gN~rIr~Vs~ 690 (1899)
T KOG4659|consen 671 PDGDVIIADSGNSRIRKVSA 690 (1899)
T ss_pred CCCcEEEecCCchhhhhhhh
Confidence 99999999999999999876
No 9
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=98.57 E-value=1.7e-07 Score=52.80 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=25.1
Q ss_pred CCeeeEEEecCCCeEEEEeCCCCeEEEE
Q 029556 45 INPHSVIDRPGSSDLIVLDSSRSAFYTL 72 (191)
Q Consensus 45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~ 72 (191)
..|+||+++ ++|++||+|++||||+++
T Consensus 2 ~~P~gvav~-~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 2 NYPHGVAVD-SDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SSEEEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred cCCcEEEEe-CCCCEEEEECCCCEEEEC
Confidence 589999996 999999999999999985
No 10
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.40 E-value=5.6e-06 Score=69.09 Aligned_cols=99 Identities=15% Similarity=0.221 Sum_probs=70.1
Q ss_pred CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCce---EEEEecCCC-ccCCCCCCcccccCCCceEEEcCCCCEEEE
Q 029556 45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV---VKRLAGDGV-QGYSDGEPGSARFDKPKSFAVDMKGNIYVA 120 (191)
Q Consensus 45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~---v~~~aG~~~-~G~~DG~~~~a~f~~P~gIavD~~G~iyVa 120 (191)
..|+|+++|-+....|+.|+.|+.|.-++.+. +.|. ...+..-.. ..+ .--.|+|+++|.+|++|||
T Consensus 158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~-~tG~~snr~~i~dlrk~~~~--------e~~~PDGm~ID~eG~L~Va 228 (310)
T KOG4499|consen 158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDC-PTGDLSNRKVIFDLRKSQPF--------ESLEPDGMTIDTEGNLYVA 228 (310)
T ss_pred cCCccccccccCcEEEEEccCceEEeeeecCC-CcccccCcceeEEeccCCCc--------CCCCCCcceEccCCcEEEE
Confidence 47999999756778999999999996666543 2332 222221111 111 1126999999999999999
Q ss_pred eCCCCEEEEEeCCCCCceEEEEeccCC---CceEecc
Q 029556 121 DKSNHVIRKITNLDHGNQLIRQINLKP---EDCSKSS 154 (191)
Q Consensus 121 D~~n~rIr~i~~~~~~~~~i~~i~~~~---~~~~~~~ 154 (191)
-+...+|.+++|..+ ..+.++.+|. +.|++..
T Consensus 229 ~~ng~~V~~~dp~tG--K~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 229 TFNGGTVQKVDPTTG--KILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred EecCcEEEEECCCCC--cEEEEEEcCCCceEEEEecC
Confidence 999999999999765 6777777773 4566654
No 11
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=98.29 E-value=7.2e-06 Score=58.61 Aligned_cols=69 Identities=13% Similarity=0.074 Sum_probs=51.0
Q ss_pred eeEEEecCCCeEEEEeCCC-----------------CeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEE
Q 029556 48 HSVIDRPGSSDLIVLDSSR-----------------SAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFA 110 (191)
Q Consensus 48 ~gIav~d~~g~lyVaD~~n-----------------~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIa 110 (191)
+++++++.+|.+|++|+.. +|+.++|+ .+++.++++. .|..|+||+
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp---~t~~~~vl~~--------------~L~fpNGVa 63 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDP---STKETTVLLD--------------GLYFPNGVA 63 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEET---TTTEEEEEEE--------------EESSEEEEE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEEC---CCCeEEEehh--------------CCCccCeEE
Confidence 4788864459999999755 78888885 4566667663 377999999
Q ss_pred EcCCCC-EEEEeCCCCEEEEEeCC
Q 029556 111 VDMKGN-IYVADKSNHVIRKITNL 133 (191)
Q Consensus 111 vD~~G~-iyVaD~~n~rIr~i~~~ 133 (191)
+++++. +.||++..+||.|+-..
T Consensus 64 ls~d~~~vlv~Et~~~Ri~rywl~ 87 (89)
T PF03088_consen 64 LSPDESFVLVAETGRYRILRYWLK 87 (89)
T ss_dssp E-TTSSEEEEEEGGGTEEEEEESS
T ss_pred EcCCCCEEEEEeccCceEEEEEEe
Confidence 999987 99999999999998754
No 12
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=97.83 E-value=8.8e-05 Score=63.29 Aligned_cols=75 Identities=16% Similarity=0.227 Sum_probs=63.4
Q ss_pred CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEe-cCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCC
Q 029556 45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLA-GDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS 123 (191)
Q Consensus 45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~a-G~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~ 123 (191)
..|+.++.+ ++|.+|+.+.+.+.|=++|. .+|++.++. |.+ .+|++|.++++|..||+|.+
T Consensus 62 ~ap~dvapa-pdG~VWft~qg~gaiGhLdP---~tGev~~ypLg~G--------------a~Phgiv~gpdg~~Witd~~ 123 (353)
T COG4257 62 SAPFDVAPA-PDGAVWFTAQGTGAIGHLDP---ATGEVETYPLGSG--------------ASPHGIVVGPDGSAWITDTG 123 (353)
T ss_pred CCccccccC-CCCceEEecCccccceecCC---CCCceEEEecCCC--------------CCCceEEECCCCCeeEecCc
Confidence 479999994 89999999999999999985 578887775 432 27999999999999999999
Q ss_pred CCEEEEEeCCCCCce
Q 029556 124 NHVIRKITNLDHGNQ 138 (191)
Q Consensus 124 n~rIr~i~~~~~~~~ 138 (191)
+ .|+|++++..+.+
T Consensus 124 ~-aI~R~dpkt~evt 137 (353)
T COG4257 124 L-AIGRLDPKTLEVT 137 (353)
T ss_pred c-eeEEecCcccceE
Confidence 8 9999999664443
No 13
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=97.74 E-value=0.00046 Score=60.77 Aligned_cols=81 Identities=22% Similarity=0.222 Sum_probs=58.0
Q ss_pred CcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCC------------CeEEEEecCCCCCce---EEEEecCCCccCCC
Q 029556 31 GYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSR------------SAFYTLSFPLSEESV---VKRLAGDGVQGYSD 95 (191)
Q Consensus 31 Gy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n------------~~I~~~d~~~~~~g~---v~~~aG~~~~G~~D 95 (191)
||.++.++++. ...+|.+|++ |++|+|||++..+ .+|++++- .+.+|. .++++.
T Consensus 1 Gf~~~l~A~~p-~~~~P~~ia~-d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d-~dgdG~~d~~~vfa~-------- 69 (367)
T TIGR02604 1 GFKVTLFAAEP-LLRNPIAVCF-DERGRLWVAEGITYSRPAGRQGPLGDRILILED-ADGDGKYDKSNVFAE-------- 69 (367)
T ss_pred CcEEEEEECCC-ccCCCceeeE-CCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEc-CCCCCCcceeEEeec--------
Confidence 57788888763 3579999999 5899999998643 37877752 222343 234432
Q ss_pred CCCcccccCCCceEEEcCCCCEEEEeCCCCEEEEEe
Q 029556 96 GEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKIT 131 (191)
Q Consensus 96 G~~~~a~f~~P~gIavD~~G~iyVaD~~n~rIr~i~ 131 (191)
.+..|+||++.++| +||++. .+|.++.
T Consensus 70 ------~l~~p~Gi~~~~~G-lyV~~~--~~i~~~~ 96 (367)
T TIGR02604 70 ------ELSMVTGLAVAVGG-VYVATP--PDILFLR 96 (367)
T ss_pred ------CCCCccceeEecCC-EEEeCC--CeEEEEe
Confidence 25689999999988 999975 4688884
No 14
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=97.72 E-value=0.0017 Score=55.55 Aligned_cols=86 Identities=19% Similarity=0.281 Sum_probs=59.7
Q ss_pred CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEE------------------------ecC-CCccCCCCCC-
Q 029556 45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRL------------------------AGD-GVQGYSDGEP- 98 (191)
Q Consensus 45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~------------------------aG~-~~~G~~DG~~- 98 (191)
.+|++|.+. ++|..||+|+++ .|.|++. ++..++.+ .|+ +..|.-|-..
T Consensus 104 a~Phgiv~g-pdg~~Witd~~~-aI~R~dp---kt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~ 178 (353)
T COG4257 104 ASPHGIVVG-PDGSAWITDTGL-AIGRLDP---KTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARN 178 (353)
T ss_pred CCCceEEEC-CCCCeeEecCcc-eeEEecC---cccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccC
Confidence 789999995 899999999999 9999985 23333322 111 1111101110
Q ss_pred -----cccccCCCceEEEcCCCCEEEEeCCCCEEEEEeCCCC
Q 029556 99 -----GSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLDH 135 (191)
Q Consensus 99 -----~~a~f~~P~gIavD~~G~iyVaD~~n~rIr~i~~~~~ 135 (191)
..-+=..|.|||..++|.+|++....+.|-+||+.+.
T Consensus 179 ~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~ 220 (353)
T COG4257 179 VISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAG 220 (353)
T ss_pred ceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccC
Confidence 0012347999999999999999999999999999654
No 15
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.68 E-value=0.0033 Score=54.77 Aligned_cols=90 Identities=13% Similarity=0.169 Sum_probs=63.1
Q ss_pred CCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCC-CccCCCCCC-cccccCCCceEEEcCCCC-EEE
Q 029556 43 LEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDG-VQGYSDGEP-GSARFDKPKSFAVDMKGN-IYV 119 (191)
Q Consensus 43 ~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~-~~G~~DG~~-~~a~f~~P~gIavD~~G~-iyV 119 (191)
....|..+++++++..+|++..+.+.|..++++ .+|.+......- ..|. |.. ....-.+|+++.++++|+ +|+
T Consensus 85 ~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~--~~g~l~~~~~~~~~~g~--g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD--DDGSLGEVVQTVRHEGS--GPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC--TTSEEEEEEEEEESEEE--ESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred CCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc--CCcccceeeeecccCCC--CCcccccccccceeEEECCCCCEEEE
Confidence 346899999988888999999999999998873 456544432110 0011 111 122345899999999976 999
Q ss_pred EeCCCCEEEEEeCCCCC
Q 029556 120 ADKSNHVIRKITNLDHG 136 (191)
Q Consensus 120 aD~~n~rIr~i~~~~~~ 136 (191)
+|.+..+|+.++.....
T Consensus 161 ~dlG~D~v~~~~~~~~~ 177 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDT 177 (345)
T ss_dssp EETTTTEEEEEEE-TTS
T ss_pred EecCCCEEEEEEEeCCC
Confidence 99999999999986543
No 16
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.59 E-value=0.0009 Score=58.02 Aligned_cols=72 Identities=19% Similarity=0.256 Sum_probs=55.0
Q ss_pred CCCeeeEEEecCCCeEEEEeCCC-----------CeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEc
Q 029556 44 EINPHSVIDRPGSSDLIVLDSSR-----------SAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVD 112 (191)
Q Consensus 44 ~~~P~gIav~d~~g~lyVaD~~n-----------~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD 112 (191)
.+.|++..+ +++|.+|+.|..+ .++|+++. .|....... ..+..|+|||++
T Consensus 110 ~~r~ND~~v-~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p----~g~~~~l~~-------------~~~~~~NGla~S 171 (307)
T COG3386 110 LNRPNDGVV-DPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP----DGGVVRLLD-------------DDLTIPNGLAFS 171 (307)
T ss_pred cCCCCceeE-cCCCCEEEeCCCccccCccccCCcceEEEEcC----CCCEEEeec-------------CcEEecCceEEC
Confidence 489999999 4889999999983 45666652 333333221 126689999999
Q ss_pred CCC-CEEEEeCCCCEEEEEeCC
Q 029556 113 MKG-NIYVADKSNHVIRKITNL 133 (191)
Q Consensus 113 ~~G-~iyVaD~~n~rIr~i~~~ 133 (191)
++| .+|++|+..++|.+++.+
T Consensus 172 pDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 172 PDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred CCCCEEEEEeCCCCeEEEEecC
Confidence 998 799999999999999875
No 17
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.53 E-value=0.0024 Score=55.65 Aligned_cols=95 Identities=13% Similarity=0.187 Sum_probs=65.8
Q ss_pred CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEEEeCC
Q 029556 45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKS 123 (191)
Q Consensus 45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD~~ 123 (191)
..|.+|+++|++..|||+..+.+.|..++++. .+|+++.+.-.... -..|.+++++++|+ +||+...
T Consensus 245 ~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~-~~g~l~~~~~~~~~-----------G~~Pr~~~~s~~g~~l~Va~~~ 312 (345)
T PF10282_consen 245 NAPAEIAISPDGRFLYVSNRGSNSISVFDLDP-ATGTLTLVQTVPTG-----------GKFPRHFAFSPDGRYLYVANQD 312 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEECTTTEEEEEEECT-TTTTEEEEEEEEES-----------SSSEEEEEE-TTSSEEEEEETT
T ss_pred CCceeEEEecCCCEEEEEeccCCEEEEEEEec-CCCceEEEEEEeCC-----------CCCccEEEEeCCCCEEEEEecC
Confidence 47999999877888999999999999998742 34666554322111 13699999999987 9999999
Q ss_pred CCEEEEEe--CCCCCceEEE-EeccCCCceE
Q 029556 124 NHVIRKIT--NLDHGNQLIR-QINLKPEDCS 151 (191)
Q Consensus 124 n~rIr~i~--~~~~~~~~i~-~i~~~~~~~~ 151 (191)
.+.|..++ ++++..+.+. .+.++...|.
T Consensus 313 s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci 343 (345)
T PF10282_consen 313 SNTVSVFDIDPDTGKLTPVGSSVPIPSPVCI 343 (345)
T ss_dssp TTEEEEEEEETTTTEEEEEEEEEESSSEEEE
T ss_pred CCeEEEEEEeCCCCcEEEecccccCCCCEEE
Confidence 99888765 4454434333 3566655554
No 18
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=97.47 E-value=0.001 Score=58.52 Aligned_cols=70 Identities=14% Similarity=0.240 Sum_probs=51.3
Q ss_pred CCeeeEEEecCCCeEEEEeCCC-------------------CeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCC
Q 029556 45 INPHSVIDRPGSSDLIVLDSSR-------------------SAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDK 105 (191)
Q Consensus 45 ~~P~gIav~d~~g~lyVaD~~n-------------------~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~ 105 (191)
..|++++++ ++|+||+++..+ +.|++++. ..++++.++. .+..
T Consensus 124 ~~~~~l~~g-pDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p---dg~~~e~~a~--------------G~rn 185 (367)
T TIGR02604 124 HSLNSLAWG-PDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP---DGGKLRVVAH--------------GFQN 185 (367)
T ss_pred ccccCceEC-CCCCEEEecccCCCceeccCCCccCcccccCceEEEEec---CCCeEEEEec--------------CcCC
Confidence 448899995 789999988732 45777763 1234554431 2678
Q ss_pred CceEEEcCCCCEEEEeCCCCEEEEEeC
Q 029556 106 PKSFAVDMKGNIYVADKSNHVIRKITN 132 (191)
Q Consensus 106 P~gIavD~~G~iyVaD~~n~rIr~i~~ 132 (191)
|.|+++|++|++|++|..+....++++
T Consensus 186 p~Gl~~d~~G~l~~tdn~~~~~~~i~~ 212 (367)
T TIGR02604 186 PYGHSVDSWGDVFFCDNDDPPLCRVTP 212 (367)
T ss_pred CccceECCCCCEEEEccCCCceeEEcc
Confidence 999999999999999988776666665
No 19
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.0013 Score=58.42 Aligned_cols=73 Identities=19% Similarity=0.352 Sum_probs=57.3
Q ss_pred CCeeeEEEecCCCeEEEEeC--CCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEEEe
Q 029556 45 INPHSVIDRPGSSDLIVLDS--SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVAD 121 (191)
Q Consensus 45 ~~P~gIav~d~~g~lyVaD~--~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD 121 (191)
..|+++++++.++.+||+|. .++++.++|. ..+.+....-. | ..|.++++|++|+ +|++|
T Consensus 116 ~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~---~t~~~~~~~~v-------G-------~~P~~~a~~p~g~~vyv~~ 178 (381)
T COG3391 116 LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDA---ATNKVTATIPV-------G-------NTPTGVAVDPDGNKVYVTN 178 (381)
T ss_pred cCCceEEECCCCCEEEEEecccCCceEEEEeC---CCCeEEEEEec-------C-------CCcceEEECCCCCeEEEEe
Confidence 58999999877889999999 5799999984 23333322211 1 1689999999998 99999
Q ss_pred CCCCEEEEEeCCC
Q 029556 122 KSNHVIRKITNLD 134 (191)
Q Consensus 122 ~~n~rIr~i~~~~ 134 (191)
..+++|-.++...
T Consensus 179 ~~~~~v~vi~~~~ 191 (381)
T COG3391 179 SDDNTVSVIDTSG 191 (381)
T ss_pred cCCCeEEEEeCCC
Confidence 9999999999644
No 20
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.36 E-value=0.0019 Score=54.44 Aligned_cols=78 Identities=18% Similarity=0.334 Sum_probs=46.8
Q ss_pred CCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCC
Q 029556 44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS 123 (191)
Q Consensus 44 ~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~ 123 (191)
...|-+++++|..+++||....++++..+| .+|++.-..--. .|. .+-...+..|.|||+|++|+|||+-.-
T Consensus 170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d----~~G~~~~~~~L~-~g~---~gl~~~~~QpEGIa~d~~G~LYIvsEp 241 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLILSDESRLLLELD----RQGRVVSSLSLD-RGF---HGLSKDIPQPEGIAFDPDGNLYIVSEP 241 (248)
T ss_dssp SS---EEEEETTTTEEEEEETTTTEEEEE-----TT--EEEEEE-S-TTG---GG-SS---SEEEEEE-TT--EEEEETT
T ss_pred eccccceEEcCCCCeEEEEECCCCeEEEEC----CCCCEEEEEEeC-Ccc---cCcccccCCccEEEECCCCCEEEEcCC
Confidence 468999999988999999999999999998 477754333211 111 011346789999999999999999876
Q ss_pred CCEEEEE
Q 029556 124 NHVIRKI 130 (191)
Q Consensus 124 n~rIr~i 130 (191)
| +..+|
T Consensus 242 N-lfy~f 247 (248)
T PF06977_consen 242 N-LFYRF 247 (248)
T ss_dssp T-EEEEE
T ss_pred c-eEEEe
Confidence 5 55554
No 21
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=97.24 E-value=0.0026 Score=56.25 Aligned_cols=67 Identities=21% Similarity=0.307 Sum_probs=47.2
Q ss_pred CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCC
Q 029556 45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN 124 (191)
Q Consensus 45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n 124 (191)
-+|-|++++..+|++||||..- -+++++. ..|..+.++.. .+ ...+...+++.+|++|.+|++|+..
T Consensus 115 GRPLGl~f~~~ggdL~VaDAYl-GL~~V~p---~g~~a~~l~~~-----~~----G~~~kf~N~ldI~~~g~vyFTDSSs 181 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAYL-GLLKVGP---EGGLAELLADE-----AE----GKPFKFLNDLDIDPEGVVYFTDSSS 181 (376)
T ss_pred CCcceEEeccCCCeEEEEecce-eeEEECC---CCCcceecccc-----cc----CeeeeecCceeEcCCCeEEEecccc
Confidence 5799999975566999999776 5666663 23333333321 12 2467778899999999999999764
No 22
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=97.22 E-value=0.0026 Score=61.14 Aligned_cols=75 Identities=17% Similarity=0.181 Sum_probs=56.8
Q ss_pred CCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCC-CCEEEEeC
Q 029556 44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMK-GNIYVADK 122 (191)
Q Consensus 44 ~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~-G~iyVaD~ 122 (191)
+..|+|||+|....++|.+|+.+.+|-.-.+ +|+.+.+.= ..-|-.|.+|++|.- |+||.+||
T Consensus 1067 L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~L----dG~~rkvLf------------~tdLVNPR~iv~D~~rgnLYwtDW 1130 (1289)
T KOG1214|consen 1067 LISPEGIAVDHIRRNMYWTDSVLDKIEVALL----DGSERKVLF------------YTDLVNPRAIVVDPIRGNLYWTDW 1130 (1289)
T ss_pred CCCccceeeeeccceeeeeccccchhheeec----CCceeeEEE------------eecccCcceEEeecccCceeeccc
Confidence 4699999998789999999999999887764 554222210 123668999999996 89999998
Q ss_pred C--CCEEEEEeCCC
Q 029556 123 S--NHVIRKITNLD 134 (191)
Q Consensus 123 ~--n~rIr~i~~~~ 134 (191)
. |-.|.+.++++
T Consensus 1131 nRenPkIets~mDG 1144 (1289)
T KOG1214|consen 1131 NRENPKIETSSMDG 1144 (1289)
T ss_pred cccCCcceeeccCC
Confidence 6 55777777744
No 23
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.20 E-value=0.0027 Score=58.85 Aligned_cols=84 Identities=17% Similarity=0.268 Sum_probs=55.8
Q ss_pred CCCCeeeEEEecCCCeEEEEeCCCC-------------------eEEEEecCCC-C---CceEEEE--ecCCC--ccCCC
Q 029556 43 LEINPHSVIDRPGSSDLIVLDSSRS-------------------AFYTLSFPLS-E---ESVVKRL--AGDGV--QGYSD 95 (191)
Q Consensus 43 ~~~~P~gIav~d~~g~lyVaD~~n~-------------------~I~~~d~~~~-~---~g~v~~~--aG~~~--~G~~D 95 (191)
.+.+|++|+++|.++.+|++-+.+. +|++++.+-. . ..+...+ .|... .....
T Consensus 348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~ 427 (524)
T PF05787_consen 348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS 427 (524)
T ss_pred cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence 4689999999988999999988887 7888875211 0 0133333 33321 11111
Q ss_pred CCCcccccCCCceEEEcCCCCEEEE-eCCCCE
Q 029556 96 GEPGSARFDKPKSFAVDMKGNIYVA-DKSNHV 126 (191)
Q Consensus 96 G~~~~a~f~~P~gIavD~~G~iyVa-D~~n~r 126 (191)
+......|+.|++|++|++|+|||+ |.+++.
T Consensus 428 ~~~~~~~f~sPDNL~~d~~G~LwI~eD~~~~~ 459 (524)
T PF05787_consen 428 NKCDDNGFASPDNLAFDPDGNLWIQEDGGGSN 459 (524)
T ss_pred CcccCCCcCCCCceEECCCCCEEEEeCCCCCC
Confidence 2224668999999999999999997 444443
No 24
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.14 E-value=0.014 Score=50.00 Aligned_cols=79 Identities=13% Similarity=0.127 Sum_probs=55.4
Q ss_pred CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEEEeCC
Q 029556 45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKS 123 (191)
Q Consensus 45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD~~ 123 (191)
..|++++++|++..+|+++.+.++|..++.+ .+|.+......... ...| ..|.+++++++|. +|+++..
T Consensus 126 ~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~--~~g~l~~~~~~~~~-~~~g-------~~p~~~~~~pdg~~lyv~~~~ 195 (330)
T PRK11028 126 EGCHSANIDPDNRTLWVPCLKEDRIRLFTLS--DDGHLVAQEPAEVT-TVEG-------AGPRHMVFHPNQQYAYCVNEL 195 (330)
T ss_pred CcccEeEeCCCCCEEEEeeCCCCEEEEEEEC--CCCcccccCCCcee-cCCC-------CCCceEEECCCCCEEEEEecC
Confidence 4789999987777899999999999999863 23433211000000 0001 2589999999976 8999998
Q ss_pred CCEEEEEeCC
Q 029556 124 NHVIRKITNL 133 (191)
Q Consensus 124 n~rIr~i~~~ 133 (191)
.+.|..++..
T Consensus 196 ~~~v~v~~~~ 205 (330)
T PRK11028 196 NSSVDVWQLK 205 (330)
T ss_pred CCEEEEEEEe
Confidence 8999888764
No 25
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=0.024 Score=50.33 Aligned_cols=81 Identities=21% Similarity=0.222 Sum_probs=60.0
Q ss_pred CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEEEeCC
Q 029556 45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKS 123 (191)
Q Consensus 45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD~~ 123 (191)
..|.+++++|.+..+|++|..+++|..++. ++..... +.... ....+..|.+++++++|+ +|+++..
T Consensus 160 ~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~----~~~~v~~-~~~~~-------~~~~~~~P~~i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 160 NTPTGVAVDPDGNKVYVTNSDDNTVSVIDT----SGNSVVR-GSVGS-------LVGVGTGPAGIAVDPDGNRVYVANDG 227 (381)
T ss_pred CCcceEEECCCCCeEEEEecCCCeEEEEeC----CCcceec-ccccc-------ccccCCCCceEEECCCCCEEEEEecc
Confidence 479999997656669999999999999984 3322221 22111 133566899999999987 9999988
Q ss_pred C--CEEEEEeCCCCCc
Q 029556 124 N--HVIRKITNLDHGN 137 (191)
Q Consensus 124 n--~rIr~i~~~~~~~ 137 (191)
+ .++.+++...+..
T Consensus 228 ~~~~~v~~id~~~~~v 243 (381)
T COG3391 228 SGSNNVLKIDTATGNV 243 (381)
T ss_pred CCCceEEEEeCCCceE
Confidence 7 6999999876544
No 26
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=96.92 E-value=0.0047 Score=43.80 Aligned_cols=52 Identities=19% Similarity=0.179 Sum_probs=44.9
Q ss_pred eccCccEEecCCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEec
Q 029556 20 SLVSSGLLLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSF 74 (191)
Q Consensus 20 ~~~~g~l~~~dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~ 74 (191)
.++-+.+..-||-..+++++|.. .|+||++++++..|||++...+.|+.+..
T Consensus 32 ~~~~~~Vvyyd~~~~~~va~g~~---~aNGI~~s~~~k~lyVa~~~~~~I~vy~~ 83 (86)
T PF01731_consen 32 GLPWGNVVYYDGKEVKVVASGFS---FANGIAISPDKKYLYVASSLAHSIHVYKR 83 (86)
T ss_pred cCCCceEEEEeCCEeEEeeccCC---CCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence 46778887777778999998866 99999998778899999999999999875
No 27
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=96.90 E-value=0.0069 Score=56.19 Aligned_cols=80 Identities=13% Similarity=0.223 Sum_probs=52.3
Q ss_pred CCCeeeEEEecCCCeEEEEeCCCC----------------eEEEEecCC----CCCceEEEEecCCCccCCCC---CC-c
Q 029556 44 EINPHSVIDRPGSSDLIVLDSSRS----------------AFYTLSFPL----SEESVVKRLAGDGVQGYSDG---EP-G 99 (191)
Q Consensus 44 ~~~P~gIav~d~~g~lyVaD~~n~----------------~I~~~d~~~----~~~g~v~~~aG~~~~G~~DG---~~-~ 99 (191)
+.+|++|++.|..+++|++.++|. +|+|+-..- +...+..+++-.+.+...++ .. .
T Consensus 416 mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~ 495 (616)
T COG3211 416 MDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANIN 495 (616)
T ss_pred ccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCcc
Confidence 479999999888889999999886 455554310 01124445543332222222 11 3
Q ss_pred ccccCCCceEEEcCCCCEEEEeCC
Q 029556 100 SARFDKPKSFAVDMKGNIYVADKS 123 (191)
Q Consensus 100 ~a~f~~P~gIavD~~G~iyVaD~~ 123 (191)
...|+.|++|++|+.|+|||+.-+
T Consensus 496 ~~~f~~PDnl~fD~~GrLWi~TDg 519 (616)
T COG3211 496 ANWFNSPDNLAFDPWGRLWIQTDG 519 (616)
T ss_pred cccccCCCceEECCCCCEEEEecC
Confidence 367999999999999999997433
No 28
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=96.87 E-value=0.03 Score=47.87 Aligned_cols=77 Identities=12% Similarity=0.056 Sum_probs=55.8
Q ss_pred CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCC-CEEEEeCC
Q 029556 45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKG-NIYVADKS 123 (191)
Q Consensus 45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G-~iyVaD~~ 123 (191)
.+|.+++++|++..+|++....++|..++.+ ++|......... . ....|++++++++| .+|+++.+
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~--~~g~~~~~~~~~-~----------~~~~~~~~~~~p~g~~l~v~~~~ 146 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLD--KDGIPVAPIQII-E----------GLEGCHSANIDPDNRTLWVPCLK 146 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEEC--CCCCCCCceeec-c----------CCCcccEeEeCCCCCEEEEeeCC
Confidence 4799999987777899999888999888763 344321111100 0 12369999999997 48899999
Q ss_pred CCEEEEEeCCC
Q 029556 124 NHVIRKITNLD 134 (191)
Q Consensus 124 n~rIr~i~~~~ 134 (191)
.++|+.++...
T Consensus 147 ~~~v~v~d~~~ 157 (330)
T PRK11028 147 EDRIRLFTLSD 157 (330)
T ss_pred CCEEEEEEECC
Confidence 99999998754
No 29
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.78 E-value=0.081 Score=46.82 Aligned_cols=96 Identities=7% Similarity=-0.057 Sum_probs=67.6
Q ss_pred CCeeeEEEecCCCeEEEEeC---------CCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCC
Q 029556 45 INPHSVIDRPGSSDLIVLDS---------SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKG 115 (191)
Q Consensus 45 ~~P~gIav~d~~g~lyVaD~---------~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G 115 (191)
..|+++ ++|++..+||+.+ ..+.|..+|. .+.++..-.-.+ +.+.......|..+++.++|
T Consensus 47 ~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~---~t~~~~~~i~~p------~~p~~~~~~~~~~~~ls~dg 116 (352)
T TIGR02658 47 FLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDP---QTHLPIADIELP------EGPRFLVGTYPWMTSLTPDN 116 (352)
T ss_pred CCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEEC---ccCcEEeEEccC------CCchhhccCccceEEECCCC
Confidence 589997 8788899999999 8899999985 343322111111 00111234578899999998
Q ss_pred C-EEEEeCC-CCEEEEEeCCCCCceEEEEeccCCCceEe
Q 029556 116 N-IYVADKS-NHVIRKITNLDHGNQLIRQINLKPEDCSK 152 (191)
Q Consensus 116 ~-iyVaD~~-n~rIr~i~~~~~~~~~i~~i~~~~~~~~~ 152 (191)
. +||+... .+.|-++|.+.+ +.+++|..+.....|
T Consensus 117 k~l~V~n~~p~~~V~VvD~~~~--kvv~ei~vp~~~~vy 153 (352)
T TIGR02658 117 KTLLFYQFSPSPAVGVVDLEGK--AFVRMMDVPDCYHIF 153 (352)
T ss_pred CEEEEecCCCCCEEEEEECCCC--cEEEEEeCCCCcEEE
Confidence 5 9999966 889999998765 677888876543333
No 30
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=96.66 E-value=0.006 Score=43.56 Aligned_cols=53 Identities=19% Similarity=0.179 Sum_probs=41.0
Q ss_pred eeccCccE--EecCCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEec
Q 029556 19 FSLVSSGL--LLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSF 74 (191)
Q Consensus 19 ~~~~~g~l--~~~dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~ 74 (191)
-+-|+|.+ +-|..-..+++.+|.. .|+||++++++..++|+++..+||.|+-+
T Consensus 32 e~~~~GRll~ydp~t~~~~vl~~~L~---fpNGVals~d~~~vlv~Et~~~Ri~rywl 86 (89)
T PF03088_consen 32 EGRPTGRLLRYDPSTKETTVLLDGLY---FPNGVALSPDESFVLVAETGRYRILRYWL 86 (89)
T ss_dssp HT---EEEEEEETTTTEEEEEEEEES---SEEEEEE-TTSSEEEEEEGGGTEEEEEES
T ss_pred cCCCCcCEEEEECCCCeEEEehhCCC---ccCeEEEcCCCCEEEEEeccCceEEEEEE
Confidence 46788988 4555558888989877 99999998777779999999999999864
No 31
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.49 E-value=0.34 Score=39.43 Aligned_cols=96 Identities=15% Similarity=0.189 Sum_probs=60.5
Q ss_pred eeeccCccEEe---cCCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCC
Q 029556 18 LFSLVSSGLLL---EDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYS 94 (191)
Q Consensus 18 ~~~~~~g~l~~---~dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~ 94 (191)
++...++.++. ..+-.+.+ ..+. ..|.+++++|++..+|++....+.|+.++. .+++.......
T Consensus 5 ~s~~~d~~v~~~d~~t~~~~~~-~~~~---~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~---~~~~~~~~~~~------ 71 (300)
T TIGR03866 5 VSNEKDNTISVIDTATLEVTRT-FPVG---QRPRGITLSKDGKLLYVCASDSDTIQVIDL---ATGEVIGTLPS------ 71 (300)
T ss_pred EEecCCCEEEEEECCCCceEEE-EECC---CCCCceEECCCCCEEEEEECCCCeEEEEEC---CCCcEEEeccC------
Confidence 34555666643 23433333 3332 368899997555668888888899999985 34443322110
Q ss_pred CCCCcccccCCCceEEEcCCCC-EEEEeCCCCEEEEEeCCC
Q 029556 95 DGEPGSARFDKPKSFAVDMKGN-IYVADKSNHVIRKITNLD 134 (191)
Q Consensus 95 DG~~~~a~f~~P~gIavD~~G~-iyVaD~~n~rIr~i~~~~ 134 (191)
+ ..|..++++++|+ +|++....++|+.++..+
T Consensus 72 -~-------~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~ 104 (300)
T TIGR03866 72 -G-------PDPELFALHPNGKILYIANEDDNLVTVIDIET 104 (300)
T ss_pred -C-------CCccEEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 0 1356788888876 777776677899998855
No 32
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=96.44 E-value=0.051 Score=49.61 Aligned_cols=94 Identities=13% Similarity=0.147 Sum_probs=64.9
Q ss_pred EecCCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCC
Q 029556 27 LLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKP 106 (191)
Q Consensus 27 ~~~dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P 106 (191)
..+.+|.++++++|.. +|.+|++. ++|+++|++...++|++++. .++....+.+.... ........+
T Consensus 15 ~~p~~f~~~~va~GL~---~Pw~mafl-PDG~llVtER~~G~I~~v~~---~~~~~~~~~~l~~v------~~~~ge~GL 81 (454)
T TIGR03606 15 AASENFDKKVLLSGLN---KPWALLWG-PDNQLWVTERATGKILRVNP---ETGEVKVVFTLPEI------VNDAQHNGL 81 (454)
T ss_pred cCCCCcEEEEEECCCC---CceEEEEc-CCCeEEEEEecCCEEEEEeC---CCCceeeeecCCce------eccCCCCce
Confidence 4588999999999876 99999995 78899999998889999973 23343344333210 001124468
Q ss_pred ceEEEcCC-------CCEEEEeC---------CCCEEEEEeCC
Q 029556 107 KSFAVDMK-------GNIYVADK---------SNHVIRKITNL 133 (191)
Q Consensus 107 ~gIavD~~-------G~iyVaD~---------~n~rIr~i~~~ 133 (191)
.||+++++ +.||++=+ ...+|.|+...
T Consensus 82 lglal~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~ 124 (454)
T TIGR03606 82 LGLALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYD 124 (454)
T ss_pred eeEEECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEEec
Confidence 89999854 46999731 24688888764
No 33
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=96.35 E-value=0.019 Score=33.88 Aligned_cols=31 Identities=10% Similarity=-0.091 Sum_probs=28.3
Q ss_pred CCCeeeEEEecCCCeEEEEeCCCCeEEEEec
Q 029556 44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSF 74 (191)
Q Consensus 44 ~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~ 74 (191)
...|+++++++.++.+|.+|...++|.+.++
T Consensus 8 ~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~ 38 (43)
T smart00135 8 LGHPNGLAVDWIEGRLYWTDWGLDVIEVANL 38 (43)
T ss_pred CCCcCEEEEeecCCEEEEEeCCCCEEEEEeC
Confidence 3599999999889999999999999999986
No 34
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.30 E-value=0.12 Score=42.06 Aligned_cols=81 Identities=10% Similarity=0.070 Sum_probs=55.9
Q ss_pred CeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEEEeCCC
Q 029556 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKSN 124 (191)
Q Consensus 46 ~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD~~n 124 (191)
.|.++++++++..+|++...++++..+|. .++++...... + ..|.+++++++|. ||++....
T Consensus 208 ~~~~i~~s~dg~~~~~~~~~~~~i~v~d~---~~~~~~~~~~~-------~-------~~~~~~~~~~~g~~l~~~~~~~ 270 (300)
T TIGR03866 208 QPVGIKLTKDGKTAFVALGPANRVAVVDA---KTYEVLDYLLV-------G-------QRVWQLAFTPDEKYLLTTNGVS 270 (300)
T ss_pred CccceEECCCCCEEEEEcCCCCeEEEEEC---CCCcEEEEEEe-------C-------CCcceEEECCCCCEEEEEcCCC
Confidence 57789997666677898888888999985 34554332211 0 1478999999986 67777667
Q ss_pred CEEEEEeCCCCCceEEEEecc
Q 029556 125 HVIRKITNLDHGNQLIRQINL 145 (191)
Q Consensus 125 ~rIr~i~~~~~~~~~i~~i~~ 145 (191)
+.|+.++.++. +.++.+.+
T Consensus 271 ~~i~v~d~~~~--~~~~~~~~ 289 (300)
T TIGR03866 271 NDVSVIDVAAL--KVIKSIKV 289 (300)
T ss_pred CeEEEEECCCC--cEEEEEEc
Confidence 88999999775 34444443
No 35
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.22 E-value=0.098 Score=45.41 Aligned_cols=88 Identities=18% Similarity=0.206 Sum_probs=50.6
Q ss_pred eeeEEEecCCCeEE-EEeCCC----CeEEEEecCCCCCc--eEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEE
Q 029556 47 PHSVIDRPGSSDLI-VLDSSR----SAFYTLSFPLSEES--VVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYV 119 (191)
Q Consensus 47 P~gIav~d~~g~ly-VaD~~n----~~I~~~d~~~~~~g--~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyV 119 (191)
=-||++++.++.+| |+|.+. -+++.++.+...++ .+.. .+...--..+|..-...-..|.||++.++|.+||
T Consensus 22 lSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~i 100 (326)
T PF13449_consen 22 LSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTI-LDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFWI 100 (326)
T ss_pred EeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEe-ccceeccCCCCCcCCcCCCChhHeEEecCCCEEE
Confidence 36788854455544 666555 33666665432111 1111 1110000112322111223899999988999999
Q ss_pred EeCCC------CEEEEEeCCCC
Q 029556 120 ADKSN------HVIRKITNLDH 135 (191)
Q Consensus 120 aD~~n------~rIr~i~~~~~ 135 (191)
++.+. ++|+++++.+.
T Consensus 101 s~E~~~~~~~~p~I~~~~~~G~ 122 (326)
T PF13449_consen 101 SSEGGRTGGIPPRIRRFDLDGR 122 (326)
T ss_pred EeCCccCCCCCCEEEEECCCCc
Confidence 99999 99999998754
No 36
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=96.14 E-value=0.029 Score=48.07 Aligned_cols=64 Identities=16% Similarity=0.172 Sum_probs=46.4
Q ss_pred CeeeEEEecCCCeEEEEeCCCCeEEEEecCCCC-CceEEEEecCCCccCCCCCCcccccCCCceEEEcC--CCCEEEEe
Q 029556 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSE-ESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM--KGNIYVAD 121 (191)
Q Consensus 46 ~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~-~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~--~G~iyVaD 121 (191)
...|+++| ++|+||+++..++.|.+.+.+..- ..+..+++-. +..+.+|++++++. +|.+|+.-
T Consensus 187 ~s~g~~~D-~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d-----------~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 187 QSDGMAID-PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQD-----------PRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp SECEEEEE-TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE------------CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCceEEEC-CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEc-----------CceeeccceeeeccccCceEEEEE
Confidence 45789995 899999999999999999852100 0256666632 23588999999999 89999974
No 37
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=96.11 E-value=0.012 Score=52.23 Aligned_cols=88 Identities=17% Similarity=0.224 Sum_probs=60.6
Q ss_pred eeeccCccE-EecCCc-EEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCC
Q 029556 18 LFSLVSSGL-LLEDGY-TVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSD 95 (191)
Q Consensus 18 ~~~~~~g~l-~~~dGy-~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~D 95 (191)
+.+-++|.+ +...-. ..+++.++.. .|+|++.+++++.+.++++...||.|+-+.-.+-|+...++- +-+
T Consensus 193 l~g~~~GRl~~YD~~tK~~~VLld~L~---F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~-~LP---- 264 (376)
T KOG1520|consen 193 LEGDPTGRLFRYDPSTKVTKVLLDGLY---FPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAE-GLP---- 264 (376)
T ss_pred ecCCCccceEEecCcccchhhhhhccc---ccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhh-cCC----
Confidence 445588888 333322 3334556555 999999998888999999999999998653222233344432 112
Q ss_pred CCCcccccCCCceEEEcCCCCEEEEe
Q 029556 96 GEPGSARFDKPKSFAVDMKGNIYVAD 121 (191)
Q Consensus 96 G~~~~a~f~~P~gIavD~~G~iyVaD 121 (191)
..|+.|..+++|++||+-
T Consensus 265 --------G~PDNIR~~~~G~fWVal 282 (376)
T KOG1520|consen 265 --------GYPDNIRRDSTGHFWVAL 282 (376)
T ss_pred --------CCCcceeECCCCCEEEEE
Confidence 279999999999999996
No 38
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=96.10 E-value=0.018 Score=34.00 Aligned_cols=34 Identities=26% Similarity=0.325 Sum_probs=29.1
Q ss_pred ccCCCceEEEcCC-CCEEEEeCCCCEEEEEeCCCC
Q 029556 102 RFDKPKSFAVDMK-GNIYVADKSNHVIRKITNLDH 135 (191)
Q Consensus 102 ~f~~P~gIavD~~-G~iyVaD~~n~rIr~i~~~~~ 135 (191)
.+..|.|+++|.. +.+|.+|+..++|.+.+.++.
T Consensus 7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 4668999999997 569999999999999987653
No 39
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=95.86 E-value=0.16 Score=44.89 Aligned_cols=80 Identities=11% Similarity=0.181 Sum_probs=57.3
Q ss_pred CCeee---EEEecCCCeEEEE-eC--------CCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEc
Q 029556 45 INPHS---VIDRPGSSDLIVL-DS--------SRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVD 112 (191)
Q Consensus 45 ~~P~g---Iav~d~~g~lyVa-D~--------~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD 112 (191)
..|.| ++++++++.+||+ .. ..+.|..+|. .++++...+-.+ ..|++|+++
T Consensus 245 wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~---~t~kvi~~i~vG--------------~~~~~iavS 307 (352)
T TIGR02658 245 WRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA---KTGKRLRKIELG--------------HEIDSINVS 307 (352)
T ss_pred cCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC---CCCeEEEEEeCC--------------CceeeEEEC
Confidence 45666 9998788999994 32 2268999985 455544433221 269999999
Q ss_pred CCCC--EEEEeCCCCEEEEEeCCCCCceEEEEe
Q 029556 113 MKGN--IYVADKSNHVIRKITNLDHGNQLIRQI 143 (191)
Q Consensus 113 ~~G~--iyVaD~~n~rIr~i~~~~~~~~~i~~i 143 (191)
++|. +|++...++.|..||.+.. +.++.+
T Consensus 308 ~Dgkp~lyvtn~~s~~VsViD~~t~--k~i~~i 338 (352)
T TIGR02658 308 QDAKPLLYALSTGDKTLYIFDAETG--KELSSV 338 (352)
T ss_pred CCCCeEEEEeCCCCCcEEEEECcCC--eEEeee
Confidence 9965 8889888889999998665 455665
No 40
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=95.84 E-value=0.11 Score=46.08 Aligned_cols=99 Identities=19% Similarity=0.255 Sum_probs=61.9
Q ss_pred eeeeeeccCccEEecCCc---EEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCce-EEEEecCCC
Q 029556 15 LSLLFSLVSSGLLLEDGY---TVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGV 90 (191)
Q Consensus 15 ~~~~~~~~~g~l~~~dGy---~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~-v~~~aG~~~ 90 (191)
+++++.--++.+.+=|+- .+.++..|.. -+.++++++++..+||+.. .+.|.++|+ .+++ +..+. .+
T Consensus 7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~---~h~~~~~s~Dgr~~yv~~r-dg~vsviD~---~~~~~v~~i~-~G- 77 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATNKVVARIPTGGA---PHAGLKFSPDGRYLYVANR-DGTVSVIDL---ATGKVVATIK-VG- 77 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT-SEEEEEE-STT---EEEEEE-TT-SSEEEEEET-TSEEEEEET---TSSSEEEEEE--S-
T ss_pred EEEEEecCCCEEEEEECCCCeEEEEEcCCCC---ceeEEEecCCCCEEEEEcC-CCeEEEEEC---CcccEEEEEe-cC-
Confidence 345666667777544442 3444443322 2455778766778999986 569999997 3333 43432 11
Q ss_pred ccCCCCCCcccccCCCceEEEcCCCC-EEEEeCCCCEEEEEeCCCC
Q 029556 91 QGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKSNHVIRKITNLDH 135 (191)
Q Consensus 91 ~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD~~n~rIr~i~~~~~ 135 (191)
..|.|+++.++|. +|++.+..+.+..+|.++.
T Consensus 78 -------------~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl 110 (369)
T PF02239_consen 78 -------------GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETL 110 (369)
T ss_dssp -------------SEEEEEEE--TTTEEEEEEEETTEEEEEETTT-
T ss_pred -------------CCcceEEEcCCCCEEEEEecCCCceeEeccccc
Confidence 1589999999986 8899999999999998653
No 41
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.49 E-value=0.086 Score=45.91 Aligned_cols=69 Identities=28% Similarity=0.459 Sum_probs=48.0
Q ss_pred CCeeeEEEec------CCCeEEEEeCCCCeEEEEecCCCCCceEE---EEecCCCccCCCCCCcccccC-CCceEEEcCC
Q 029556 45 INPHSVIDRP------GSSDLIVLDSSRSAFYTLSFPLSEESVVK---RLAGDGVQGYSDGEPGSARFD-KPKSFAVDMK 114 (191)
Q Consensus 45 ~~P~gIav~d------~~g~lyVaD~~n~~I~~~d~~~~~~g~v~---~~aG~~~~G~~DG~~~~a~f~-~P~gIavD~~ 114 (191)
..|.|+++.. -.|.++++|...++|+++.++ .++.+. .+++ .+. .|.+|+++++
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~--------------~~~~r~~~v~~~pD 316 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLD--EDGSVTEEEEFLG--------------GFGGRPRDVAQGPD 316 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEE--TTEEEEEEEEECT--------------TSSS-EEEEEEETT
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeee--cCCCccceEEccc--------------cCCCCceEEEEcCC
Confidence 4688888852 267899999999999999862 233321 2221 122 6899999999
Q ss_pred CCEEEEeCCCCEEEE
Q 029556 115 GNIYVADKSNHVIRK 129 (191)
Q Consensus 115 G~iyVaD~~n~rIr~ 129 (191)
|.|||+|..+++|.|
T Consensus 317 G~Lyv~~d~~G~iyR 331 (331)
T PF07995_consen 317 GALYVSDDSDGKIYR 331 (331)
T ss_dssp SEEEEEE-TTTTEEE
T ss_pred CeEEEEECCCCeEeC
Confidence 999999988888875
No 42
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=95.36 E-value=1.8 Score=38.14 Aligned_cols=128 Identities=13% Similarity=0.046 Sum_probs=81.4
Q ss_pred CCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCC-ccCCCCCCcccccCCCceEEEcCCC-CEEEEe
Q 029556 44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGV-QGYSDGEPGSARFDKPKSFAVDMKG-NIYVAD 121 (191)
Q Consensus 44 ~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~-~G~~DG~~~~a~f~~P~gIavD~~G-~iyVaD 121 (191)
...|..+++|+.+.-+++|....++|.++.++ .+|.+....+.-. .| .|+-....-.+++-.-++++| .+++.|
T Consensus 88 g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~--~dG~l~~~v~~~~h~g--~~p~~rQ~~~h~H~a~~tP~~~~l~v~D 163 (346)
T COG2706 88 GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQ--ADGSLQPVVQVVKHTG--SGPHERQESPHVHSANFTPDGRYLVVPD 163 (346)
T ss_pred CCCCeEEEECCCCCEEEEEEccCceEEEEEcc--cCCccccceeeeecCC--CCCCccccCCccceeeeCCCCCEEEEee
Confidence 45679999975555899999999999998763 4576555443311 11 011112223357888899998 588999
Q ss_pred CCCCEEEEEeCCCCCceEEEEeccCC----CceEeccCCCCccEEEEEecCeEEEeeeeeEEEEEEE
Q 029556 122 KSNHVIRKITNLDHGNQLIRQINLKP----EDCSKSSQSGSGMFWVTVFSPYLISCKSFWVHLYLYF 184 (191)
Q Consensus 122 ~~n~rIr~i~~~~~~~~~i~~i~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (191)
-+..||..++.+++.-+......+++ .-.++.+. ...+|++.+-+.-|-+|-|.
T Consensus 164 LG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn---------~k~aY~v~EL~stV~v~~y~ 221 (346)
T COG2706 164 LGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPN---------GKYAYLVNELNSTVDVLEYN 221 (346)
T ss_pred cCCceEEEEEcccCccccccccccCCCCCcceEEEcCC---------CcEEEEEeccCCEEEEEEEc
Confidence 99999999999865433222222221 11233322 44567788888888887775
No 43
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=95.32 E-value=0.57 Score=41.93 Aligned_cols=80 Identities=11% Similarity=0.129 Sum_probs=52.6
Q ss_pred CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEc----CCCCEEEE
Q 029556 45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVD----MKGNIYVA 120 (191)
Q Consensus 45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD----~~G~iyVa 120 (191)
..|+|+++||..+.||+++.. .-||+++.+.+.....+.++... | ...-....||++= .+|.|.++
T Consensus 208 sQ~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep~~~~~~~~v~~~~------g---~~l~aDvEGlaly~~~~g~gYLivS 277 (381)
T PF02333_consen 208 SQPEGCVVDDETGRLYVGEED-VGIWRYDAEPEGGNDRTLVASAD------G---DGLVADVEGLALYYGSDGKGYLIVS 277 (381)
T ss_dssp S-EEEEEEETTTTEEEEEETT-TEEEEEESSCCC-S--EEEEEBS------S---SSB-S-EEEEEEEE-CCC-EEEEEE
T ss_pred CcceEEEEecccCCEEEecCc-cEEEEEecCCCCCCcceeeeccc------c---cccccCccceEEEecCCCCeEEEEE
Confidence 589999999999999999966 59999986432211223332111 1 0112356788872 34679999
Q ss_pred eCCCCEEEEEeCCC
Q 029556 121 DKSNHVIRKITNLD 134 (191)
Q Consensus 121 D~~n~rIr~i~~~~ 134 (191)
+.+++....++.++
T Consensus 278 sQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 278 SQGDNSFAVYDREG 291 (381)
T ss_dssp EGGGTEEEEEESST
T ss_pred cCCCCeEEEEecCC
Confidence 99999999999865
No 44
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=95.26 E-value=0.079 Score=51.39 Aligned_cols=77 Identities=14% Similarity=0.029 Sum_probs=59.0
Q ss_pred CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCC-CCEEEEeCC
Q 029556 45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMK-GNIYVADKS 123 (191)
Q Consensus 45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~-G~iyVaD~~ 123 (191)
..|-||.+|-.+..+|.+|...+.|.+-.+ ..++.++++- ..|..|.|||+|-. .|||.+|+.
T Consensus 1025 ~IiVGidfDC~e~mvyWtDv~g~SI~rasL---~G~Ep~ti~n-------------~~L~SPEGiAVDh~~Rn~ywtDS~ 1088 (1289)
T KOG1214|consen 1025 SIIVGIDFDCRERMVYWTDVAGRSISRASL---EGAEPETIVN-------------SGLISPEGIAVDHIRRNMYWTDSV 1088 (1289)
T ss_pred ceeeeeecccccceEEEeecCCCccccccc---cCCCCceeec-------------ccCCCccceeeeeccceeeeeccc
Confidence 467888886567789999999999998865 2334555552 34779999999976 589999999
Q ss_pred CCEEEEEeCCCCCc
Q 029556 124 NHVIRKITNLDHGN 137 (191)
Q Consensus 124 n~rIr~i~~~~~~~ 137 (191)
+.+|.+...++...
T Consensus 1089 lD~IevA~LdG~~r 1102 (1289)
T KOG1214|consen 1089 LDKIEVALLDGSER 1102 (1289)
T ss_pred cchhheeecCCcee
Confidence 99998777755433
No 45
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=95.15 E-value=0.095 Score=31.83 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=29.9
Q ss_pred CeEEEEeCCCC-eEEEEecCCCCCc-eEEEEecCCCccCCCCCCcccccCCCceEEEcC
Q 029556 57 SDLIVLDSSRS-AFYTLSFPLSEES-VVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDM 113 (191)
Q Consensus 57 g~lyVaD~~n~-~I~~~d~~~~~~g-~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~ 113 (191)
++||.+|...+ +|.+.++ +| ..++++.. .+..|.|||+|.
T Consensus 1 ~~iYWtD~~~~~~I~~a~~----dGs~~~~vi~~-------------~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANL----DGSNRRTVISD-------------DLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEET----TSTSEEEEEES-------------STSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEEC----CCCCeEEEEEC-------------CCCCcCEEEECC
Confidence 57999999999 9999986 33 24444422 367999999984
No 46
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.01 E-value=0.23 Score=43.23 Aligned_cols=77 Identities=16% Similarity=0.180 Sum_probs=50.8
Q ss_pred CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceE-EEEecCCCccCCCCCCcccccCCCceEEEcCC----CCEEE
Q 029556 45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVV-KRLAGDGVQGYSDGEPGSARFDKPKSFAVDMK----GNIYV 119 (191)
Q Consensus 45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v-~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~----G~iyV 119 (191)
++|..|++. ++|.+||++. .++|++++ .+|.. ..+.....- . ......+.||+++++ +.+|+
T Consensus 2 ~~P~~~a~~-pdG~l~v~e~-~G~i~~~~----~~g~~~~~v~~~~~v-~------~~~~~gllgia~~p~f~~n~~lYv 68 (331)
T PF07995_consen 2 NNPRSMAFL-PDGRLLVAER-SGRIWVVD----KDGSLKTPVADLPEV-F------ADGERGLLGIAFHPDFASNGYLYV 68 (331)
T ss_dssp SSEEEEEEE-TTSCEEEEET-TTEEEEEE----TTTEECEEEEE-TTT-B------TSTTBSEEEEEE-TTCCCC-EEEE
T ss_pred CCceEEEEe-CCCcEEEEeC-CceEEEEe----CCCcCcceecccccc-c------ccccCCcccceeccccCCCCEEEE
Confidence 589999996 6799999998 89999997 35655 444433110 0 112236789999994 88999
Q ss_pred EeCCC--------CEEEEEeCCC
Q 029556 120 ADKSN--------HVIRKITNLD 134 (191)
Q Consensus 120 aD~~n--------~rIr~i~~~~ 134 (191)
+-+.. .+|.++...+
T Consensus 69 ~~t~~~~~~~~~~~~v~r~~~~~ 91 (331)
T PF07995_consen 69 YYTNADEDGGDNDNRVVRFTLSD 91 (331)
T ss_dssp EEEEE-TSSSSEEEEEEEEEEET
T ss_pred EEEcccCCCCCcceeeEEEeccC
Confidence 86632 4677776544
No 47
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=94.64 E-value=2 Score=37.24 Aligned_cols=70 Identities=14% Similarity=0.188 Sum_probs=45.2
Q ss_pred CeeeEEEecCCCeEEEEeCCC------CeEEEEecCCCCCceEEEEecCCCcc--CCCCCCccccc-CCCceEEEcCCCC
Q 029556 46 NPHSVIDRPGSSDLIVLDSSR------SAFYTLSFPLSEESVVKRLAGDGVQG--YSDGEPGSARF-DKPKSFAVDMKGN 116 (191)
Q Consensus 46 ~P~gIav~d~~g~lyVaD~~n------~~I~~~d~~~~~~g~v~~~aG~~~~G--~~DG~~~~a~f-~~P~gIavD~~G~ 116 (191)
.|++|++ +.++.+||++.+. ++|++++. +|++..-.-.+..- ...+. ...+- ....+||+.++|.
T Consensus 86 D~Egi~~-~~~g~~~is~E~~~~~~~~p~I~~~~~----~G~~~~~~~vP~~~~~~~~~~-~~~~~N~G~E~la~~~dG~ 159 (326)
T PF13449_consen 86 DPEGIAV-PPDGSFWISSEGGRTGGIPPRIRRFDL----DGRVIRRFPVPAAFLPDANGT-SGRRNNRGFEGLAVSPDGR 159 (326)
T ss_pred ChhHeEE-ecCCCEEEEeCCccCCCCCCEEEEECC----CCcccceEccccccccccCcc-ccccCCCCeEEEEECCCCC
Confidence 8899999 6999999999999 99999984 56542221111100 00000 01111 2578999999998
Q ss_pred -EEEEe
Q 029556 117 -IYVAD 121 (191)
Q Consensus 117 -iyVaD 121 (191)
+|++-
T Consensus 160 ~l~~~~ 165 (326)
T PF13449_consen 160 TLFAAM 165 (326)
T ss_pred EEEEEE
Confidence 88763
No 48
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=94.38 E-value=0.093 Score=37.18 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=27.5
Q ss_pred ccCCCceEEEcCCC-CEEEEeCCCCEEEEEeCC
Q 029556 102 RFDKPKSFAVDMKG-NIYVADKSNHVIRKITNL 133 (191)
Q Consensus 102 ~f~~P~gIavD~~G-~iyVaD~~n~rIr~i~~~ 133 (191)
.|..|+||++|+++ .||||+...+.|+.+...
T Consensus 52 g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 52 GFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred cCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 37799999999875 599999999999988753
No 49
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.36 E-value=0.12 Score=43.63 Aligned_cols=35 Identities=9% Similarity=0.101 Sum_probs=29.9
Q ss_pred CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEE
Q 029556 45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVK 83 (191)
Q Consensus 45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~ 83 (191)
..|.|+++ |.+|+||||-.+.++|+++|+ .+|++.
T Consensus 212 ~~PDGm~I-D~eG~L~Va~~ng~~V~~~dp---~tGK~L 246 (310)
T KOG4499|consen 212 LEPDGMTI-DTEGNLYVATFNGGTVQKVDP---TTGKIL 246 (310)
T ss_pred CCCCcceE-ccCCcEEEEEecCcEEEEECC---CCCcEE
Confidence 47999999 589999999999999999986 466533
No 50
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=93.84 E-value=0.97 Score=38.71 Aligned_cols=83 Identities=16% Similarity=0.195 Sum_probs=52.6
Q ss_pred CeeeEEEecCCCeEEEEeCCC------------CeEEEEecCCCCCceEEEEe-cCCCccCCCCCCcccccCCCceEEEc
Q 029556 46 NPHSVIDRPGSSDLIVLDSSR------------SAFYTLSFPLSEESVVKRLA-GDGVQGYSDGEPGSARFDKPKSFAVD 112 (191)
Q Consensus 46 ~P~gIav~d~~g~lyVaD~~n------------~~I~~~d~~~~~~g~v~~~a-G~~~~G~~DG~~~~a~f~~P~gIavD 112 (191)
+.+++.+ |..+.|||.|++. -++..+|+ ..+..++++. ..... . .-..-..+++|
T Consensus 2 sV~~v~i-D~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl--~t~~li~~~~~p~~~~-------~--~~s~lndl~VD 69 (287)
T PF03022_consen 2 SVQRVQI-DECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDL--KTNQLIRRYPFPPDIA-------P--PDSFLNDLVVD 69 (287)
T ss_dssp -EEEEEE--TTSEEEEEE-CCHSSSSTTGHTS--EEEEEET--TTTCEEEEEE--CCCS----------TCGGEEEEEEE
T ss_pred cccEEEE-cCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEEC--CCCcEEEEEECChHHc-------c--cccccceEEEE
Confidence 4678899 5899999999885 48889986 2333444442 11100 0 11234567888
Q ss_pred CC------CCEEEEeCCCCEEEEEeCCCCCceEE
Q 029556 113 MK------GNIYVADKSNHVIRKITNLDHGNQLI 140 (191)
Q Consensus 113 ~~------G~iyVaD~~n~rIr~i~~~~~~~~~i 140 (191)
.. +.+||+|.++..|.+++..++...++
T Consensus 70 ~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv 103 (287)
T PF03022_consen 70 VRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRV 103 (287)
T ss_dssp CTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEE
T ss_pred ccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEE
Confidence 63 46999999999999999977533333
No 51
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=93.53 E-value=0.07 Score=31.86 Aligned_cols=20 Identities=45% Similarity=0.632 Sum_probs=17.3
Q ss_pred CCceEEEcCCCCEEEEeCCC
Q 029556 105 KPKSFAVDMKGNIYVADKSN 124 (191)
Q Consensus 105 ~P~gIavD~~G~iyVaD~~n 124 (191)
.|.+|++|++||+||+=..+
T Consensus 14 ~~~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred eEEEEEECCCCCEEEEEeec
Confidence 68999999999999986544
No 52
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.45 E-value=0.65 Score=27.10 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=18.4
Q ss_pred cCCCeEEEEeCCCCeEEEEec
Q 029556 54 PGSSDLIVLDSSRSAFYTLSF 74 (191)
Q Consensus 54 d~~g~lyVaD~~n~~I~~~d~ 74 (191)
|+++.+|+++...+.|..+|.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~ 21 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDT 21 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEEC
Confidence 467789999999999999985
No 53
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=93.26 E-value=0.37 Score=42.13 Aligned_cols=38 Identities=21% Similarity=0.108 Sum_probs=31.3
Q ss_pred CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEec
Q 029556 45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAG 87 (191)
Q Consensus 45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG 87 (191)
.-|++.-+ .+|.||++|++.+.+.++|. .+|+...++-
T Consensus 203 smPhSPRW--hdgrLwvldsgtGev~~vD~---~~G~~e~Va~ 240 (335)
T TIGR03032 203 SMPHSPRW--YQGKLWLLNSGRGELGYVDP---QAGKFQPVAF 240 (335)
T ss_pred cCCcCCcE--eCCeEEEEECCCCEEEEEcC---CCCcEEEEEE
Confidence 47888888 58999999999999999985 2487777763
No 54
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.95 E-value=0.58 Score=40.53 Aligned_cols=74 Identities=20% Similarity=0.353 Sum_probs=45.5
Q ss_pred eeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceE-EEEe-cCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCCC
Q 029556 48 HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVV-KRLA-GDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH 125 (191)
Q Consensus 48 ~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v-~~~a-G~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n~ 125 (191)
.|+.+++.+++++|.--..+++..++. +|.+ ..+. -.+..| -....-.|.|||.|++|+|||+-.-|
T Consensus 236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~----~G~~~~~lsL~~g~~g------L~~dipqaEGiamDd~g~lYIvSEPn- 304 (316)
T COG3204 236 SGLEFNAITNSLLVLSDESRRLLEVDL----SGEVIELLSLTKGNHG------LSSDIPQAEGIAMDDDGNLYIVSEPN- 304 (316)
T ss_pred ccceecCCCCcEEEEecCCceEEEEec----CCCeeeeEEeccCCCC------CcccCCCcceeEECCCCCEEEEecCC-
Confidence 345555557778877777788888875 4442 2211 111111 12234579999999999999986544
Q ss_pred EEEEEeC
Q 029556 126 VIRKITN 132 (191)
Q Consensus 126 rIr~i~~ 132 (191)
...+|.+
T Consensus 305 lfy~F~~ 311 (316)
T COG3204 305 LFYRFTP 311 (316)
T ss_pred cceeccc
Confidence 4455554
No 55
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=92.93 E-value=4.7 Score=35.59 Aligned_cols=117 Identities=15% Similarity=0.213 Sum_probs=74.4
Q ss_pred CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC-EEEEeCC
Q 029556 45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN-IYVADKS 123 (191)
Q Consensus 45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~-iyVaD~~ 123 (191)
.+++..-++|++..+++.|-+..||+.++++ +|.+....-... .+| ..|.=|++.++|. .|+.-.-
T Consensus 145 ~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~---dg~L~~~~~~~v---~~G-------~GPRHi~FHpn~k~aY~v~EL 211 (346)
T COG2706 145 PHVHSANFTPDGRYLVVPDLGTDRIFLYDLD---DGKLTPADPAEV---KPG-------AGPRHIVFHPNGKYAYLVNEL 211 (346)
T ss_pred CccceeeeCCCCCEEEEeecCCceEEEEEcc---cCcccccccccc---CCC-------CCcceEEEcCCCcEEEEEecc
Confidence 3467778877777899999999999999873 565443321111 112 2588999999986 8888878
Q ss_pred CCEEEEEeC--CCCCceEEEEeccCCCceEeccCCCCccEEEEEecCeEEEeeee
Q 029556 124 NHVIRKITN--LDHGNQLIRQINLKPEDCSKSSQSGSGMFWVTVFSPYLISCKSF 176 (191)
Q Consensus 124 n~rIr~i~~--~~~~~~~i~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 176 (191)
|++|-.+.- ..+..+.+..+..-|++. ....+.+..-+-.-|.|++.|.-.
T Consensus 212 ~stV~v~~y~~~~g~~~~lQ~i~tlP~dF--~g~~~~aaIhis~dGrFLYasNRg 264 (346)
T COG2706 212 NSTVDVLEYNPAVGKFEELQTIDTLPEDF--TGTNWAAAIHISPDGRFLYASNRG 264 (346)
T ss_pred CCEEEEEEEcCCCceEEEeeeeccCcccc--CCCCceeEEEECCCCCEEEEecCC
Confidence 888876654 334445555555555653 333343344444456666666433
No 56
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=92.77 E-value=1.1 Score=40.09 Aligned_cols=77 Identities=14% Similarity=0.239 Sum_probs=44.3
Q ss_pred CCeeeEEEe--cCCCeEEE-EeCCCCeEEEEecCCCCCceEEEE-ecCCCccCCCCCCcccccCCCceEEEcCC-CCEEE
Q 029556 45 INPHSVIDR--PGSSDLIV-LDSSRSAFYTLSFPLSEESVVKRL-AGDGVQGYSDGEPGSARFDKPKSFAVDMK-GNIYV 119 (191)
Q Consensus 45 ~~P~gIav~--d~~g~lyV-aD~~n~~I~~~d~~~~~~g~v~~~-aG~~~~G~~DG~~~~a~f~~P~gIavD~~-G~iyV 119 (191)
..|+|+|.- +.+|.+|+ ....++++..+.+..+.+|.+..- +-. + ..-..|.|+++|.+ |.+|+
T Consensus 156 ~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~----f-------~~~sQ~EGCVVDDe~g~LYv 224 (381)
T PF02333_consen 156 SEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVRE----F-------KVGSQPEGCVVDDETGRLYV 224 (381)
T ss_dssp SSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEE----E-------E-SS-EEEEEEETTTTEEEE
T ss_pred ccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEE----e-------cCCCcceEEEEecccCCEEE
Confidence 468999983 44566662 333446676665532334422110 000 0 00126899999987 89999
Q ss_pred EeCCCCEEEEEeCC
Q 029556 120 ADKSNHVIRKITNL 133 (191)
Q Consensus 120 aD~~n~rIr~i~~~ 133 (191)
++. +.-|++++.+
T Consensus 225 gEE-~~GIW~y~Ae 237 (381)
T PF02333_consen 225 GEE-DVGIWRYDAE 237 (381)
T ss_dssp EET-TTEEEEEESS
T ss_pred ecC-ccEEEEEecC
Confidence 996 4799999875
No 57
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=92.06 E-value=0.95 Score=40.79 Aligned_cols=78 Identities=21% Similarity=0.241 Sum_probs=53.0
Q ss_pred CCeeeEEEecCC------CeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEE
Q 029556 45 INPHSVIDRPGS------SDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIY 118 (191)
Q Consensus 45 ~~P~gIav~d~~------g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iy 118 (191)
..|-||++.+.+ ++++|+--+...+.+.+ ++|..+.+...-..+ |. ..+|-++++..+|-+|
T Consensus 314 ~ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~----~~g~~~~~~~~fl~~--d~------~gR~~dV~v~~DGall 381 (399)
T COG2133 314 IAPSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLR----PDGNYKVVLTGFLSG--DL------GGRPRDVAVAPDGALL 381 (399)
T ss_pred cccceeEEecCCcCccccCcEEEEeecceeEEEec----cCCCcceEEEEEEec--CC------CCcccceEECCCCeEE
Confidence 357899996332 68999988888777765 355533333210000 11 0489999999999999
Q ss_pred EEeCC-CCEEEEEeCCC
Q 029556 119 VADKS-NHVIRKITNLD 134 (191)
Q Consensus 119 VaD~~-n~rIr~i~~~~ 134 (191)
++|-. |.+|.|+..++
T Consensus 382 v~~D~~~g~i~Rv~~~~ 398 (399)
T COG2133 382 VLTDQGDGRILRVSYAG 398 (399)
T ss_pred EeecCCCCeEEEecCCC
Confidence 98766 77999998753
No 58
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=91.84 E-value=4.2 Score=35.06 Aligned_cols=93 Identities=14% Similarity=0.176 Sum_probs=64.5
Q ss_pred CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCC-CccCCCCCCcccccCCCceEEEc----CCCCEEE
Q 029556 45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDG-VQGYSDGEPGSARFDKPKSFAVD----MKGNIYV 119 (191)
Q Consensus 45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~-~~G~~DG~~~~a~f~~P~gIavD----~~G~iyV 119 (191)
.+.++|.. +.+|++.|+-+..+.|++++. .+|++.+..|.. ...+.. ....|...+...+- .+++|-+
T Consensus 144 ~HiNsV~~-~~~G~yLiS~R~~~~i~~I~~---~tG~I~W~lgG~~~~df~~---~~~~f~~QHdar~~~~~~~~~~Isl 216 (299)
T PF14269_consen 144 FHINSVDK-DDDGDYLISSRNTSTIYKIDP---STGKIIWRLGGKRNSDFTL---PATNFSWQHDARFLNESNDDGTISL 216 (299)
T ss_pred cEeeeeee-cCCccEEEEecccCEEEEEEC---CCCcEEEEeCCCCCCcccc---cCCcEeeccCCEEeccCCCCCEEEE
Confidence 45577877 478899999999999999995 589999988654 211111 34456666666665 5666777
Q ss_pred EeC----------CCCEEEEEeCCCCCceEEEEec
Q 029556 120 ADK----------SNHVIRKITNLDHGNQLIRQIN 144 (191)
Q Consensus 120 aD~----------~n~rIr~i~~~~~~~~~i~~i~ 144 (191)
-|- ...++..+++++...+.+++..
T Consensus 217 FDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~ 251 (299)
T PF14269_consen 217 FDNANSDFNGTEPSRGLVLELDPETMTVTLVREYS 251 (299)
T ss_pred EcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEee
Confidence 665 4568888888765555555554
No 59
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=90.91 E-value=6.2 Score=34.55 Aligned_cols=73 Identities=16% Similarity=0.207 Sum_probs=49.6
Q ss_pred CCeeeEEEecCCCeEEEEe-------------CCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEE
Q 029556 45 INPHSVIDRPGSSDLIVLD-------------SSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAV 111 (191)
Q Consensus 45 ~~P~gIav~d~~g~lyVaD-------------~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIav 111 (191)
..|.+|.. -+++|||+= .+...|-+++ .+|++....- ....||.|+||++
T Consensus 189 yAPFnIqn--ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd----~~G~l~~r~a-----------s~g~LNaPWG~a~ 251 (336)
T TIGR03118 189 YAPFNVQN--LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFT----LNGQLLRRVA-----------SSGRLNAPWGLAI 251 (336)
T ss_pred CCCcceEE--ECCeEEEEEEecCCcccccccCCCcceEEEEc----CCCcEEEEec-----------cCCcccCCceeee
Confidence 45777766 578999863 2223444444 2444332211 1347999999999
Q ss_pred cC------CCCEEEEeCCCCEEEEEeCCC
Q 029556 112 DM------KGNIYVADKSNHVIRKITNLD 134 (191)
Q Consensus 112 D~------~G~iyVaD~~n~rIr~i~~~~ 134 (191)
-+ .|.|.|...+.++|..+|+..
T Consensus 252 APa~FG~~sg~lLVGNFGDG~InaFD~~s 280 (336)
T TIGR03118 252 APESFGSLSGALLVGNFGDGTINAYDPQS 280 (336)
T ss_pred ChhhhCCCCCCeEEeecCCceeEEecCCC
Confidence 65 468999999999999999863
No 60
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=89.45 E-value=6.4 Score=33.12 Aligned_cols=73 Identities=15% Similarity=0.199 Sum_probs=50.7
Q ss_pred CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCC
Q 029556 45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN 124 (191)
Q Consensus 45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n 124 (191)
.++-|++++|+++.||..--....|+.++. +|++.....- .| +..|.||++-.+|.+.+++-..
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~----~G~vlr~i~l--~g----------~~D~EgI~y~g~~~~vl~~Er~ 85 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSL----DGKVLRRIPL--DG----------FGDYEGITYLGNGRYVLSEERD 85 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEET----T--EEEEEE---SS-----------SSEEEEEE-STTEEEEEETTT
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcC----CCCEEEEEeC--CC----------CCCceeEEEECCCEEEEEEcCC
Confidence 569999998778889966666778988874 6664433321 11 3468999999888888899888
Q ss_pred CEEEEEeCC
Q 029556 125 HVIRKITNL 133 (191)
Q Consensus 125 ~rIr~i~~~ 133 (191)
+++..++..
T Consensus 86 ~~L~~~~~~ 94 (248)
T PF06977_consen 86 QRLYIFTID 94 (248)
T ss_dssp TEEEEEEE-
T ss_pred CcEEEEEEe
Confidence 999988873
No 61
>PRK02888 nitrous-oxide reductase; Validated
Probab=88.66 E-value=2.1 Score=40.70 Aligned_cols=78 Identities=19% Similarity=0.175 Sum_probs=56.4
Q ss_pred CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCC---ce---EEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEE
Q 029556 45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEE---SV---VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIY 118 (191)
Q Consensus 45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~---g~---v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iy 118 (191)
.+|+|++++|++..+|++....+.+-.+|.+.-++ ++ ...+++...-| ..|...++|.+|+.|
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG-----------lGPLHTaFDg~G~ay 389 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG-----------LGPLHTAFDGRGNAY 389 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC-----------CCcceEEECCCCCEE
Confidence 78999999988889999999999999998631110 00 11222221111 268899999999999
Q ss_pred EEeCCCCEEEEEeCC
Q 029556 119 VADKSNHVIRKITNL 133 (191)
Q Consensus 119 VaD~~n~rIr~i~~~ 133 (191)
.+=...++|-|.+.+
T Consensus 390 tslf~dsqv~kwn~~ 404 (635)
T PRK02888 390 TTLFLDSQIVKWNIE 404 (635)
T ss_pred EeEeecceeEEEehH
Confidence 998888889999874
No 62
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=87.89 E-value=1.1 Score=41.14 Aligned_cols=34 Identities=12% Similarity=0.265 Sum_probs=30.0
Q ss_pred ccCCCceEEEcCCCCEEEEeCCCCEEEEEeCCCC
Q 029556 102 RFDKPKSFAVDMKGNIYVADKSNHVIRKITNLDH 135 (191)
Q Consensus 102 ~f~~P~gIavD~~G~iyVaD~~n~rIr~i~~~~~ 135 (191)
.|..|.+|++.++|++||++...++|+++++.+.
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~ 61 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETG 61 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence 3779999999999999999987789999987654
No 63
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=87.67 E-value=1.3 Score=26.31 Aligned_cols=20 Identities=5% Similarity=0.024 Sum_probs=16.4
Q ss_pred CCeeeEEEecCCCeEEEEeCC
Q 029556 45 INPHSVIDRPGSSDLIVLDSS 65 (191)
Q Consensus 45 ~~P~gIav~d~~g~lyVaD~~ 65 (191)
..|++|++ |.+|++||+=.-
T Consensus 13 ~~~~~Iav-D~~GNiYv~G~T 32 (38)
T PF06739_consen 13 DYGNGIAV-DSNGNIYVTGYT 32 (38)
T ss_pred eeEEEEEE-CCCCCEEEEEee
Confidence 47999999 599999998443
No 64
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=87.17 E-value=21 Score=31.64 Aligned_cols=30 Identities=13% Similarity=0.175 Sum_probs=25.1
Q ss_pred CCeeeEEEecCCCeEEEEeCCCCeEEEEec
Q 029556 45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSF 74 (191)
Q Consensus 45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~ 74 (191)
..|+++++++++..+|++....+.+..+|.
T Consensus 78 ~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~ 107 (369)
T PF02239_consen 78 GNPRGIAVSPDGKYVYVANYEPGTVSVIDA 107 (369)
T ss_dssp SEEEEEEE--TTTEEEEEEEETTEEEEEET
T ss_pred CCcceEEEcCCCCEEEEEecCCCceeEecc
Confidence 579999998777789999999999999984
No 65
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=86.26 E-value=23 Score=31.21 Aligned_cols=95 Identities=14% Similarity=0.216 Sum_probs=60.1
Q ss_pred CeeeEEEecCCCeEEEEeCCCCeEEEEecCC--------------C------------CCceEEE--EecCC--CccCC-
Q 029556 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPL--------------S------------EESVVKR--LAGDG--VQGYS- 94 (191)
Q Consensus 46 ~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~--------------~------------~~g~v~~--~aG~~--~~G~~- 94 (191)
+-++|++ .++.+++..+.-+|+-.++... . .+|+..- -.+.. ..|++
T Consensus 104 diHdia~--~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~~sD~~~gWR~ 181 (335)
T TIGR03032 104 DAHDLAL--GAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALSQSDVADGWRE 181 (335)
T ss_pred chhheee--cCCcEEEEECcceeEEEECCCCccccccCCccccccCccCceeecceeeeCCeEEEEEEeeccCCcccccc
Confidence 5677888 4678888888888998887631 0 1333222 22321 13332
Q ss_pred ---CCCC---------cccccCCCceEEEcCCCCEEEEeCCCCEEEEEeCCCCCceEEEEe
Q 029556 95 ---DGEP---------GSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLDHGNQLIRQI 143 (191)
Q Consensus 95 ---DG~~---------~~a~f~~P~gIavD~~G~iyVaD~~n~rIr~i~~~~~~~~~i~~i 143 (191)
+|+. ...-|..|++--+- +|.+|++|++.+++.++|++++..+.+..+
T Consensus 182 ~~~~gG~vidv~s~evl~~GLsmPhSPRWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~v 241 (335)
T TIGR03032 182 GRRDGGCVIDIPSGEVVASGLSMPHSPRWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAFL 241 (335)
T ss_pred cccCCeEEEEeCCCCEEEcCccCCcCCcEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEEC
Confidence 2221 11235667776666 589999999999999999976655555444
No 66
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=85.82 E-value=2.9 Score=25.16 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=23.4
Q ss_pred CCEEEEeCCCC-EEEEEeCCCCCceEEEEec
Q 029556 115 GNIYVADKSNH-VIRKITNLDHGNQLIRQIN 144 (191)
Q Consensus 115 G~iyVaD~~n~-rIr~i~~~~~~~~~i~~i~ 144 (191)
|+||.+|...+ +|.+.+..+...+++..-.
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~ 31 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISDD 31 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEESS
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECC
Confidence 57999999999 9999999876655554433
No 67
>PRK02888 nitrous-oxide reductase; Validated
Probab=85.64 E-value=26 Score=33.55 Aligned_cols=31 Identities=13% Similarity=0.197 Sum_probs=26.8
Q ss_pred CCCceEEEcCCCC-EEEEeCCCCEEEEEeCCC
Q 029556 104 DKPKSFAVDMKGN-IYVADKSNHVIRKITNLD 134 (191)
Q Consensus 104 ~~P~gIavD~~G~-iyVaD~~n~rIr~i~~~~ 134 (191)
.+|+|++++++|. +|++-.....+-.||.+.
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k 352 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK 352 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence 5899999999986 889988888899998754
No 68
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=85.60 E-value=18 Score=30.82 Aligned_cols=68 Identities=9% Similarity=0.045 Sum_probs=44.2
Q ss_pred CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCc-eEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCC
Q 029556 45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEES-VVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS 123 (191)
Q Consensus 45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g-~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~ 123 (191)
..-+|+++ -++.||..-..++..+++|.+ +- .+..+. + +| ...|+|.|. ..+|++| +
T Consensus 90 ~FgEGit~--~~d~l~qLTWk~~~~f~yd~~---tl~~~~~~~------y-~~--------EGWGLt~dg-~~Li~SD-G 147 (264)
T PF05096_consen 90 YFGEGITI--LGDKLYQLTWKEGTGFVYDPN---TLKKIGTFP------Y-PG--------EGWGLTSDG-KRLIMSD-G 147 (264)
T ss_dssp --EEEEEE--ETTEEEEEESSSSEEEEEETT---TTEEEEEEE--------SS--------S--EEEECS-SCEEEE--S
T ss_pred ccceeEEE--ECCEEEEEEecCCeEEEEccc---cceEEEEEe------c-CC--------cceEEEcCC-CEEEEEC-C
Confidence 45689998 478999999999999999852 22 222221 1 01 457999774 4799999 5
Q ss_pred CCEEEEEeCCC
Q 029556 124 NHVIRKITNLD 134 (191)
Q Consensus 124 n~rIr~i~~~~ 134 (191)
+.+|+.+||++
T Consensus 148 S~~L~~~dP~~ 158 (264)
T PF05096_consen 148 SSRLYFLDPET 158 (264)
T ss_dssp SSEEEEE-TTT
T ss_pred ccceEEECCcc
Confidence 78999999954
No 69
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=85.59 E-value=8.1 Score=35.43 Aligned_cols=78 Identities=21% Similarity=0.293 Sum_probs=48.0
Q ss_pred CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCC-------------CC------CcccccCC
Q 029556 45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSD-------------GE------PGSARFDK 105 (191)
Q Consensus 45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~D-------------G~------~~~a~f~~ 105 (191)
.|-++|..++.++.|+++-+..+.|.+++. .++++.+++|... ++.. |. .....+..
T Consensus 271 ~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~---~t~~i~Wilg~~~-~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~g 346 (477)
T PF05935_consen 271 LHINSIDYDPSDDSIIVSSRHQSAVIKIDY---RTGKIKWILGPPG-GWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWG 346 (477)
T ss_dssp --EEEEEEETTTTEEEEEETTT-EEEEEE----TTS-EEEEES-ST-T--TTTGGGB-EEB-TTS-B-EBSSSS----SS
T ss_pred cccCccEEeCCCCeEEEEcCcceEEEEEEC---CCCcEEEEeCCCC-CCCcccchheeeeeccCCceeeccCCCCccccc
Confidence 466889997668999999999999999995 5789999998743 2211 11 12234557
Q ss_pred CceEEEcCCC---CEEEEeCCCCE
Q 029556 106 PKSFAVDMKG---NIYVADKSNHV 126 (191)
Q Consensus 106 P~gIavD~~G---~iyVaD~~n~r 126 (191)
.|...+-++| +|.+-|-++.|
T Consensus 347 QH~~~~~~~g~~~~l~vFDNg~~r 370 (477)
T PF05935_consen 347 QHTAHLIPDGPQGNLLVFDNGNGR 370 (477)
T ss_dssp -EEEEE-TTS---SEEEEE--TTG
T ss_pred ccceEEcCCCCeEEEEEEECCCCC
Confidence 7888888888 99998866554
No 70
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=85.00 E-value=1.7 Score=39.73 Aligned_cols=36 Identities=22% Similarity=0.405 Sum_probs=32.0
Q ss_pred ccccCCCceEEEcCCCCEEEEeCCCCEEEEEeCCCC
Q 029556 100 SARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLDH 135 (191)
Q Consensus 100 ~a~f~~P~gIavD~~G~iyVaD~~n~rIr~i~~~~~ 135 (191)
..+|.-|+|+.+|++|..|++|...|.+.+..++..
T Consensus 463 ~~~fylphgl~~dkdgf~~~tdvash~v~k~k~~~~ 498 (501)
T KOG3567|consen 463 KNLFYLPHGLSIDKDGFYWVTDVASHQVFKLKPNNK 498 (501)
T ss_pred CCceecCCcceecCCCcEEeecccchhhhhcccccc
Confidence 457999999999999999999999999999887653
No 71
>smart00284 OLF Olfactomedin-like domains.
Probab=83.09 E-value=11 Score=31.96 Aligned_cols=82 Identities=16% Similarity=0.124 Sum_probs=45.5
Q ss_pred eeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC--EEEEeCCCC
Q 029556 48 HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN--IYVADKSNH 125 (191)
Q Consensus 48 ~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~--iyVaD~~n~ 125 (191)
.|-.| -+|.+|.--.+++.|.|+|+ .++.+....--+.+++.+-..-...-..--.+|+|++|- ||-+...++
T Consensus 77 tG~VV--YngslYY~~~~s~~iiKydL---~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g 151 (255)
T smart00284 77 TGVVV--YNGSLYFNKFNSHDICRFDL---TTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAG 151 (255)
T ss_pred ccEEE--ECceEEEEecCCccEEEEEC---CCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCC
Confidence 34455 37899999888999999997 344443222112223221100000011234689999884 666655545
Q ss_pred EEE--EEeCCC
Q 029556 126 VIR--KITNLD 134 (191)
Q Consensus 126 rIr--~i~~~~ 134 (191)
.|. |++|.+
T Consensus 152 ~ivvSkLnp~t 162 (255)
T smart00284 152 KIVISKLNPAT 162 (255)
T ss_pred CEEEEeeCccc
Confidence 444 888754
No 72
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=82.56 E-value=15 Score=31.69 Aligned_cols=29 Identities=21% Similarity=0.377 Sum_probs=22.4
Q ss_pred CCceEEEcCC-CCEEEEeCCCCEEEEEeCCC
Q 029556 105 KPKSFAVDMK-GNIYVADKSNHVIRKITNLD 134 (191)
Q Consensus 105 ~P~gIavD~~-G~iyVaD~~n~rIr~i~~~~ 134 (191)
.-.|+..|.+ |.+||++. +-.|+|+..+-
T Consensus 206 QTEG~VaDdEtG~LYIaeE-dvaiWK~~Aep 235 (364)
T COG4247 206 QTEGMVADDETGFLYIAEE-DVAIWKYEAEP 235 (364)
T ss_pred cccceeeccccceEEEeec-cceeeecccCC
Confidence 3457777766 99999985 57899998753
No 73
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.97 E-value=33 Score=29.92 Aligned_cols=102 Identities=17% Similarity=0.219 Sum_probs=59.6
Q ss_pred eeeeeccCccE-EecCCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEe------cC
Q 029556 16 SLLFSLVSSGL-LLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLA------GD 88 (191)
Q Consensus 16 ~~~~~~~~g~l-~~~dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~a------G~ 88 (191)
|-+.+-|..=+ ...+|-.++++- ...+.+|++|++- .++...++|....+++++.++ +++++.... |.
T Consensus 101 Fav~n~p~~iVElt~~GdlirtiP--L~g~~DpE~Ieyi-g~n~fvi~dER~~~l~~~~vd--~~t~~~~~~~~~i~L~~ 175 (316)
T COG3204 101 FAVTNKPAAIVELTKEGDLIRTIP--LTGFSDPETIEYI-GGNQFVIVDERDRALYLFTVD--ADTTVISAKVQKIPLGT 175 (316)
T ss_pred EEecCCCceEEEEecCCceEEEec--ccccCChhHeEEe-cCCEEEEEehhcceEEEEEEc--CCccEEeccceEEeccc
Confidence 33445555544 344676666653 1225699999995 566666899999999999874 343333222 22
Q ss_pred CCccCCCCCCcccccCCCceEEEcCC-CCEEEEeCCC-CEEEEEeC
Q 029556 89 GVQGYSDGEPGSARFDKPKSFAVDMK-GNIYVADKSN-HVIRKITN 132 (191)
Q Consensus 89 ~~~G~~DG~~~~a~f~~P~gIavD~~-G~iyVaD~~n-~rIr~i~~ 132 (191)
.... +. .=.|+|.|+. +.+|++...| -+|..++.
T Consensus 176 ~~k~-------N~---GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 176 TNKK-------NK---GFEGLAWDPVDHRLFVAKERNPIGIFEVTQ 211 (316)
T ss_pred cCCC-------Cc---CceeeecCCCCceEEEEEccCCcEEEEEec
Confidence 1000 11 2358888886 5688876543 25555553
No 74
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=76.17 E-value=17 Score=30.98 Aligned_cols=78 Identities=17% Similarity=0.184 Sum_probs=43.8
Q ss_pred CeeeEEEecCCCeEEEEeCCCCeEEEEecC-CCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCC
Q 029556 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFP-LSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN 124 (191)
Q Consensus 46 ~P~gIav~d~~g~lyVaD~~n~~I~~~d~~-~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n 124 (191)
..-|++. ++..+|++|. +++++..|+. +...+++.+..+ | ..-.++|.-.-+ +|.||---+..
T Consensus 131 EGWGLt~--dg~~Li~SDG-S~~L~~~dP~~f~~~~~i~V~~~--------g-~pv~~LNELE~i----~G~IyANVW~t 194 (264)
T PF05096_consen 131 EGWGLTS--DGKRLIMSDG-SSRLYFLDPETFKEVRTIQVTDN--------G-RPVSNLNELEYI----NGKIYANVWQT 194 (264)
T ss_dssp S--EEEE--CSSCEEEE-S-SSEEEEE-TTT-SEEEEEE-EET--------T-EE---EEEEEEE----TTEEEEEETTS
T ss_pred cceEEEc--CCCEEEEECC-ccceEEECCcccceEEEEEEEEC--------C-EECCCcEeEEEE----cCEEEEEeCCC
Confidence 4467886 4778999995 7799999851 111122222211 1 111234433322 68999999999
Q ss_pred CEEEEEeCCCCCceE
Q 029556 125 HVIRKITNLDHGNQL 139 (191)
Q Consensus 125 ~rIr~i~~~~~~~~~ 139 (191)
.+|.+|||+++.+..
T Consensus 195 d~I~~Idp~tG~V~~ 209 (264)
T PF05096_consen 195 DRIVRIDPETGKVVG 209 (264)
T ss_dssp SEEEEEETTT-BEEE
T ss_pred CeEEEEeCCCCeEEE
Confidence 999999998875543
No 75
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=76.03 E-value=12 Score=21.37 Aligned_cols=30 Identities=17% Similarity=0.393 Sum_probs=22.9
Q ss_pred CCEEEEeCCCCEEEEEeCCCCCceEEEEeccC
Q 029556 115 GNIYVADKSNHVIRKITNLDHGNQLIRQINLK 146 (191)
Q Consensus 115 G~iyVaD~~n~rIr~i~~~~~~~~~i~~i~~~ 146 (191)
+.+|+++++.+.|-.+|+... +.++.+...
T Consensus 4 ~~lyv~~~~~~~v~~id~~~~--~~~~~i~vg 33 (42)
T TIGR02276 4 TKLYVTNSGSNTVSVIDTATN--KVIATIPVG 33 (42)
T ss_pred CEEEEEeCCCCEEEEEECCCC--eEEEEEECC
Confidence 469999999999999998553 555666554
No 76
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=72.66 E-value=66 Score=28.18 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=20.3
Q ss_pred CCCEEEEeCCCCEEEEEeCCCCCceEEEEeccC
Q 029556 114 KGNIYVADKSNHVIRKITNLDHGNQLIRQINLK 146 (191)
Q Consensus 114 ~G~iyVaD~~n~rIr~i~~~~~~~~~i~~i~~~ 146 (191)
+|.+|+.+. ++.|..+++.++ +.+-+..+.
T Consensus 335 ~g~l~v~~~-~G~l~~ld~~tG--~~~~~~~~~ 364 (394)
T PRK11138 335 NGYLVVGDS-EGYLHWINREDG--RFVAQQKVD 364 (394)
T ss_pred CCEEEEEeC-CCEEEEEECCCC--CEEEEEEcC
Confidence 578999885 468989998765 344444443
No 77
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=70.80 E-value=4.8 Score=21.19 Aligned_cols=17 Identities=24% Similarity=0.392 Sum_probs=13.1
Q ss_pred CCceEEEcCCCCEEEEe
Q 029556 105 KPKSFAVDMKGNIYVAD 121 (191)
Q Consensus 105 ~P~gIavD~~G~iyVaD 121 (191)
.-..|+.|++|+|||+-
T Consensus 6 ~I~~i~~D~~G~lWigT 22 (24)
T PF07494_consen 6 NIYSIYEDSDGNLWIGT 22 (24)
T ss_dssp CEEEEEE-TTSCEEEEE
T ss_pred eEEEEEEcCCcCEEEEe
Confidence 45678999999999974
No 78
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=70.51 E-value=43 Score=28.11 Aligned_cols=61 Identities=7% Similarity=-0.064 Sum_probs=40.7
Q ss_pred CCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCC-ccCCCCCCcccccCCCceEEEcCCC-CEEEEe
Q 029556 56 SSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGV-QGYSDGEPGSARFDKPKSFAVDMKG-NIYVAD 121 (191)
Q Consensus 56 ~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~-~G~~DG~~~~a~f~~P~gIavD~~G-~iyVaD 121 (191)
+|.+|---..+.+|.|+++ .+|++..+..... .-.. .......+-++|||.|+++ .+|++-
T Consensus 185 dG~lyANVw~t~~I~rI~p---~sGrV~~widlS~L~~~~--~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 185 DGELYANVWQTTRIARIDP---DSGRVVAWIDLSGLLKEL--NLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ccEEEEeeeeecceEEEcC---CCCcEEEEEEccCCchhc--CccccccccccceeecCcCCeEEEec
Confidence 6778877778889999986 4788776654321 1000 0112346789999999985 688874
No 79
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=69.74 E-value=58 Score=28.21 Aligned_cols=59 Identities=8% Similarity=0.180 Sum_probs=37.3
Q ss_pred eeeeeeccCccEE---e---cCCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEec
Q 029556 15 LSLLFSLVSSGLL---L---EDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSF 74 (191)
Q Consensus 15 ~~~~~~~~~g~l~---~---~dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~ 74 (191)
+..+++.+.|.+. + .+|+.-........+-..-+|+.+++..|.|||++.. -.|||+.-
T Consensus 169 ~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQTEG~VaDdEtG~LYIaeEd-vaiWK~~A 233 (364)
T COG4247 169 YYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFKIPTQTEGMVADDETGFLYIAEED-VAIWKYEA 233 (364)
T ss_pred EEEEEecCCCceeEEEEEecCCceEcceeeEeeecCCcccceeeccccceEEEeecc-ceeeeccc
Confidence 4566777777662 1 1343322322222222456899998889999999854 48999975
No 80
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=69.11 E-value=37 Score=32.97 Aligned_cols=73 Identities=14% Similarity=-0.028 Sum_probs=49.4
Q ss_pred CeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCCC
Q 029556 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH 125 (191)
Q Consensus 46 ~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n~ 125 (191)
.-+.|++.|.+++-|++=+-.++++..+. ++-++..+.... ..-+.+|+.++|.-.|.-+.++
T Consensus 411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI---~d~~Vv~W~Dl~--------------~lITAvcy~PdGk~avIGt~~G 473 (712)
T KOG0283|consen 411 FVTCVAFNPVDDRYFISGSLDGKVRLWSI---SDKKVVDWNDLR--------------DLITAVCYSPDGKGAVIGTFNG 473 (712)
T ss_pred eeEEEEecccCCCcEeecccccceEEeec---CcCeeEeehhhh--------------hhheeEEeccCCceEEEEEecc
Confidence 34788898888999999888888888876 455555443211 1345667777777766666667
Q ss_pred EEEEEeCCCC
Q 029556 126 VIRKITNLDH 135 (191)
Q Consensus 126 rIr~i~~~~~ 135 (191)
..|.++..+.
T Consensus 474 ~C~fY~t~~l 483 (712)
T KOG0283|consen 474 YCRFYDTEGL 483 (712)
T ss_pred EEEEEEccCC
Confidence 6776666543
No 81
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=67.73 E-value=23 Score=31.15 Aligned_cols=35 Identities=9% Similarity=0.063 Sum_probs=30.9
Q ss_pred cccccCCCceEEEcCCCCEEEEeCCCCEEEEEeCC
Q 029556 99 GSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNL 133 (191)
Q Consensus 99 ~~a~f~~P~gIavD~~G~iyVaD~~n~rIr~i~~~ 133 (191)
.+..|..|+||++.+.|.+||+|.+.+....++-+
T Consensus 18 tDp~L~N~WGia~~p~~~~WVadngT~~~TlYdg~ 52 (336)
T TIGR03118 18 VDPGLRNAWGLSYRPGGPFWVANTGTGTATLYVGN 52 (336)
T ss_pred cCccccccceeEecCCCCEEEecCCcceEEeecCC
Confidence 35578899999999999999999999998888875
No 82
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=67.72 E-value=31 Score=30.23 Aligned_cols=108 Identities=21% Similarity=0.289 Sum_probs=55.7
Q ss_pred eeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCC-CCCCcccccCCCceEEEcCCCCEEEEe-CCCC
Q 029556 48 HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYS-DGEPGSARFDKPKSFAVDMKGNIYVAD-KSNH 125 (191)
Q Consensus 48 ~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~-DG~~~~a~f~~P~gIavD~~G~iyVaD-~~n~ 125 (191)
..+|+ .+.++.++| |.|-+++- .+|++.+=.|-+-.|.. |. .+|..-++- +..||. ++..
T Consensus 196 wnvai--ndr~ilisd---hvie~inc---tngkinwgigiglagstydn-------~ype~q~vk---nfvvanitgs~ 257 (464)
T PRK10123 196 WNVAI--NDRDILISD---HVIERINC---TNGKINWGIGIGLAGSTYDN-------NYPEDQAVK---NFVVANITGSD 257 (464)
T ss_pred EEEEe--cccceeeeh---heheeecc---cCCcccceeeeeeccccccC-------CCchhhhhh---hEEEEeccCcC
Confidence 34555 466788876 55555552 47888887776655432 22 255555443 556665 3333
Q ss_pred EEEEEeCCCCCceEEEEeccCCCceEeccCCCCccEEEEEecCeEEEeeeeeE
Q 029556 126 VIRKITNLDHGNQLIRQINLKPEDCSKSSQSGSGMFWVTVFSPYLISCKSFWV 178 (191)
Q Consensus 126 rIr~i~~~~~~~~~i~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 178 (191)
|=+-+.-+.+..-.||-+.-..-.-.++..+|.....++ +|.|+.|++
T Consensus 258 crqlvhvengkhfvirnvkaknitpdfskkagidnatva-----iygcdnfvi 305 (464)
T PRK10123 258 CRQLIHVENGKHFVIRNIKAKNITPDFSKKAGIDNATVA-----IYGCDNFVI 305 (464)
T ss_pred hhheEEecCCcEEEEEeeeccccCCCchhhcCCCcceEE-----EEcccceEE
Confidence 433344444444455555433322234444555544333 455666654
No 83
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=66.65 E-value=89 Score=27.31 Aligned_cols=91 Identities=14% Similarity=0.118 Sum_probs=56.3
Q ss_pred eeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCce-EEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCCC
Q 029556 47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH 125 (191)
Q Consensus 47 P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~-v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n~ 125 (191)
=+.|.++ ++|...+.-+.++.++.+|- -+|. ...+.+- ....+.|-+-++.++|+..++-+.++
T Consensus 190 w~~l~FS-~dGK~iLlsT~~s~~~~lDA---f~G~~~~tfs~~-----------~~~~~~~~~a~ftPds~Fvl~gs~dg 254 (311)
T KOG1446|consen 190 WTDLEFS-PDGKSILLSTNASFIYLLDA---FDGTVKSTFSGY-----------PNAGNLPLSATFTPDSKFVLSGSDDG 254 (311)
T ss_pred eeeeEEc-CCCCEEEEEeCCCcEEEEEc---cCCcEeeeEeec-----------cCCCCcceeEEECCCCcEEEEecCCC
Confidence 3678887 44544444456667888873 4565 3333322 12234677788889999888888889
Q ss_pred EEEEEeCCCC-CceEEEEeccCCCceEe
Q 029556 126 VIRKITNLDH-GNQLIRQINLKPEDCSK 152 (191)
Q Consensus 126 rIr~i~~~~~-~~~~i~~i~~~~~~~~~ 152 (191)
+|...+.+++ .+...++....+..|..
T Consensus 255 ~i~vw~~~tg~~v~~~~~~~~~~~~~~~ 282 (311)
T KOG1446|consen 255 TIHVWNLETGKKVAVLRGPNGGPVSCVR 282 (311)
T ss_pred cEEEEEcCCCcEeeEecCCCCCCccccc
Confidence 9998888554 33444554344455543
No 84
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=66.52 E-value=78 Score=26.60 Aligned_cols=81 Identities=19% Similarity=0.132 Sum_probs=42.9
Q ss_pred eEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC--EEEEeCCCC-
Q 029556 49 SVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN--IYVADKSNH- 125 (191)
Q Consensus 49 gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~--iyVaD~~n~- 125 (191)
|-.+ -+|.+|.--.+...|.|+|+ .++.+....--+.+++.+-..-...=..=-.+|+|++|- ||-+...++
T Consensus 73 G~vV--YngslYY~~~~s~~IvkydL---~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ 147 (250)
T PF02191_consen 73 GHVV--YNGSLYYNKYNSRNIVKYDL---TTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGN 147 (250)
T ss_pred CeEE--ECCcEEEEecCCceEEEEEC---cCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCc
Confidence 4445 47889988889999999997 344443221111122221110000111224689998884 554554433
Q ss_pred -EEEEEeCCC
Q 029556 126 -VIRKITNLD 134 (191)
Q Consensus 126 -rIr~i~~~~ 134 (191)
.|-|+||++
T Consensus 148 ivvskld~~t 157 (250)
T PF02191_consen 148 IVVSKLDPET 157 (250)
T ss_pred EEEEeeCccc
Confidence 445777755
No 85
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=58.52 E-value=36 Score=26.84 Aligned_cols=65 Identities=15% Similarity=0.165 Sum_probs=40.7
Q ss_pred EEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCCCEEEEE
Q 029556 51 IDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKI 130 (191)
Q Consensus 51 av~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n~rIr~i 130 (191)
++ +.++.+|+++ .++.++.+|. .+|++..-.-.+. .+..+ ..++ ++.+|++...+ +|+.+
T Consensus 32 ~~-~~~~~v~~~~-~~~~l~~~d~---~tG~~~W~~~~~~-----------~~~~~--~~~~-~~~v~v~~~~~-~l~~~ 91 (238)
T PF13360_consen 32 AV-PDGGRVYVAS-GDGNLYALDA---KTGKVLWRFDLPG-----------PISGA--PVVD-GGRVYVGTSDG-SLYAL 91 (238)
T ss_dssp EE-EETTEEEEEE-TTSEEEEEET---TTSEEEEEEECSS-----------CGGSG--EEEE-TTEEEEEETTS-EEEEE
T ss_pred EE-EeCCEEEEEc-CCCEEEEEEC---CCCCEEEEeeccc-----------cccce--eeec-cccccccccee-eeEec
Confidence 55 3688999995 7789999985 4787665442211 11111 2333 46788877544 88888
Q ss_pred eCCCC
Q 029556 131 TNLDH 135 (191)
Q Consensus 131 ~~~~~ 135 (191)
+..++
T Consensus 92 d~~tG 96 (238)
T PF13360_consen 92 DAKTG 96 (238)
T ss_dssp ETTTS
T ss_pred ccCCc
Confidence 86554
No 86
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=56.29 E-value=88 Score=30.83 Aligned_cols=73 Identities=18% Similarity=0.181 Sum_probs=54.1
Q ss_pred CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCce-EEEEecCCCccCCCCCCcccccCCCceEEEcCC-CCEEEEeC
Q 029556 45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMK-GNIYVADK 122 (191)
Q Consensus 45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~-v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~-G~iyVaD~ 122 (191)
..|.++++|=-.+++|.+|..+..+.+.++ +|. ..+++.. .+..|..+++|+. |-+|.+|+
T Consensus 480 ~~~~~lavD~~~~~~y~tDe~~~~i~v~~~----~g~~~~vl~~~-------------~l~~~r~~~v~p~~g~~~wtd~ 542 (877)
T KOG1215|consen 480 CIPEGLAVDWIGDNIYWTDEGNCLIEVADL----DGSSRKVLVSK-------------DLDLPRSIAVDPEKGLMFWTDW 542 (877)
T ss_pred cccCcEEEEeccCCceecccCCceeEEEEc----cCCceeEEEec-------------CCCCccceeeccccCeeEEecC
Confidence 489999996558899999999999999874 332 3344332 1247899999997 88999999
Q ss_pred C-CCEEEEEeCCC
Q 029556 123 S-NHVIRKITNLD 134 (191)
Q Consensus 123 ~-n~rIr~i~~~~ 134 (191)
+ ..+|.|-..++
T Consensus 543 ~~~~~i~ra~~dg 555 (877)
T KOG1215|consen 543 GQPPRIERASLDG 555 (877)
T ss_pred CCCchhhhhcCCC
Confidence 8 44676666644
No 87
>PTZ00421 coronin; Provisional
Probab=54.02 E-value=1.7e+02 Score=27.03 Aligned_cols=71 Identities=13% Similarity=0.180 Sum_probs=42.8
Q ss_pred eeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceE-EEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCCC
Q 029556 47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVV-KRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH 125 (191)
Q Consensus 47 P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v-~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n~ 125 (191)
...++++|..+++.++-...+.|+..|+ .++.. ..+.+. . ..-.++++.++|.+.++-..++
T Consensus 128 V~~l~f~P~~~~iLaSgs~DgtVrIWDl---~tg~~~~~l~~h-----~---------~~V~sla~spdG~lLatgs~Dg 190 (493)
T PTZ00421 128 VGIVSFHPSAMNVLASAGADMVVNVWDV---ERGKAVEVIKCH-----S---------DQITSLEWNLDGSLLCTTSKDK 190 (493)
T ss_pred EEEEEeCcCCCCEEEEEeCCCEEEEEEC---CCCeEEEEEcCC-----C---------CceEEEEEECCCCEEEEecCCC
Confidence 3567776444566666666777877775 23332 222111 0 1235677777888777777777
Q ss_pred EEEEEeCCC
Q 029556 126 VIRKITNLD 134 (191)
Q Consensus 126 rIr~i~~~~ 134 (191)
.|+.+|+..
T Consensus 191 ~IrIwD~rs 199 (493)
T PTZ00421 191 KLNIIDPRD 199 (493)
T ss_pred EEEEEECCC
Confidence 888888743
No 88
>PTZ00420 coronin; Provisional
Probab=53.68 E-value=1.7e+02 Score=27.70 Aligned_cols=72 Identities=13% Similarity=0.014 Sum_probs=44.9
Q ss_pred CeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCCC
Q 029556 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH 125 (191)
Q Consensus 46 ~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n~ 125 (191)
.-..++++|.+..+.++-...+.|+..|+ .++......... .....++++++|.+.++-...+
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl---~tg~~~~~i~~~--------------~~V~SlswspdG~lLat~s~D~ 189 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDI---ENEKRAFQINMP--------------KKLSSLKWNIKGNLLSGTCVGK 189 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEEC---CCCcEEEEEecC--------------CcEEEEEECCCCCEEEEEecCC
Confidence 34677886444455555566778888875 233322111100 1356788888999888776677
Q ss_pred EEEEEeCCC
Q 029556 126 VIRKITNLD 134 (191)
Q Consensus 126 rIr~i~~~~ 134 (191)
.|+.+|+..
T Consensus 190 ~IrIwD~Rs 198 (568)
T PTZ00420 190 HMHIIDPRK 198 (568)
T ss_pred EEEEEECCC
Confidence 898888854
No 89
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=51.81 E-value=94 Score=27.86 Aligned_cols=82 Identities=20% Similarity=0.182 Sum_probs=50.9
Q ss_pred CCeeeEEEecCCCeEEEEeCCCC-----eEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCC--E
Q 029556 45 INPHSVIDRPGSSDLIVLDSSRS-----AFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGN--I 117 (191)
Q Consensus 45 ~~P~gIav~d~~g~lyVaD~~n~-----~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~--i 117 (191)
-.|+.|+. -.+|++|++.-..+ +|+..+ +|+....+++.... |...| ...+-..--.+.+|++|| +
T Consensus 183 Tf~yNmgA-l~nGH~Y~asLSG~~~SPLKiY~w~---tPts~PevIa~inV-~~I~g--Ag~RhGDn~S~nlD~nGnGyi 255 (442)
T PF15416_consen 183 TFSYNMGA-LVNGHSYLASLSGGKASPLKIYYWE---TPTSAPEVIADINV-GDIPG--AGNRHGDNFSLNLDENGNGYI 255 (442)
T ss_pred ccccchhh-hcCCeEEEEeccCCCCCceEEEEec---CCCCCceEEEeeee-ccCcc--cccccCcceeEEeccCCceEE
Confidence 46777777 47999999875442 455554 35666666664321 00001 011222345678898865 8
Q ss_pred EEEeCCCCEEEEEeCC
Q 029556 118 YVADKSNHVIRKITNL 133 (191)
Q Consensus 118 yVaD~~n~rIr~i~~~ 133 (191)
|+.|.....|.|++-+
T Consensus 256 FFgdnaat~ilR~~vs 271 (442)
T PF15416_consen 256 FFGDNAATNILRFTVS 271 (442)
T ss_pred EecCCccceEEEEEcc
Confidence 8899888888888864
No 90
>PRK04792 tolB translocation protein TolB; Provisional
Probab=50.32 E-value=1.9e+02 Score=26.02 Aligned_cols=43 Identities=14% Similarity=0.181 Sum_probs=23.6
Q ss_pred cCCcEEEEEEcCccCCCCeeeEEEecCCCeEEE-EeC-CCCeEEEEec
Q 029556 29 EDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIV-LDS-SRSAFYTLSF 74 (191)
Q Consensus 29 ~dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyV-aD~-~n~~I~~~d~ 74 (191)
.||...+++..+.. .-....++|++..|++ ++. ++.+|+.+++
T Consensus 205 ~dG~~~~~l~~~~~---~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl 249 (448)
T PRK04792 205 YDGYNEQMLLRSPE---PLMSPAWSPDGRKLAYVSFENRKAEIFVQDI 249 (448)
T ss_pred CCCCCceEeecCCC---cccCceECCCCCEEEEEEecCCCcEEEEEEC
Confidence 35555555444332 2245678766666654 432 3457888875
No 91
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=48.04 E-value=2.2e+02 Score=28.27 Aligned_cols=72 Identities=15% Similarity=0.146 Sum_probs=43.8
Q ss_pred CeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCc-eEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCC
Q 029556 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEES-VVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN 124 (191)
Q Consensus 46 ~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g-~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n 124 (191)
.-++|+|+ ++-.+.+.-.....|+.|+. .+| ..+.+-|... .+| .|--+.+|+.|+...+-..+
T Consensus 598 TlYDm~Vd-p~~k~v~t~cQDrnirif~i---~sgKq~k~FKgs~~---~eG--------~lIKv~lDPSgiY~atScsd 662 (1080)
T KOG1408|consen 598 TLYDMAVD-PTSKLVVTVCQDRNIRIFDI---ESGKQVKSFKGSRD---HEG--------DLIKVILDPSGIYLATSCSD 662 (1080)
T ss_pred eEEEeeeC-CCcceEEEEecccceEEEec---cccceeeeeccccc---CCC--------ceEEEEECCCccEEEEeecC
Confidence 34789995 55555555566677888875 345 4677766421 134 35556777776555555566
Q ss_pred CEEEEEeC
Q 029556 125 HVIRKITN 132 (191)
Q Consensus 125 ~rIr~i~~ 132 (191)
..+-.+|-
T Consensus 663 ktl~~~Df 670 (1080)
T KOG1408|consen 663 KTLCFVDF 670 (1080)
T ss_pred CceEEEEe
Confidence 66666664
No 92
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=47.06 E-value=2.2e+02 Score=25.72 Aligned_cols=74 Identities=22% Similarity=0.211 Sum_probs=51.2
Q ss_pred CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCce-EEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCC
Q 029556 45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS 123 (191)
Q Consensus 45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~-v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~ 123 (191)
...+.++++ +.++++++=...+.|+..+. ++|+ ...+.+. .+ .-.++++..+|++.++=..
T Consensus 247 ~~v~~~~f~-p~g~~i~Sgs~D~tvriWd~---~~~~~~~~l~~h-----s~---------~is~~~f~~d~~~l~s~s~ 308 (456)
T KOG0266|consen 247 TYVTSVAFS-PDGNLLVSGSDDGTVRIWDV---RTGECVRKLKGH-----SD---------GISGLAFSPDGNLLVSASY 308 (456)
T ss_pred CceEEEEec-CCCCEEEEecCCCcEEEEec---cCCeEEEeeecc-----CC---------ceEEEEECCCCCEEEEcCC
Confidence 455889996 55599999889999999886 3454 3333332 11 2356788888887666566
Q ss_pred CCEEEEEeCCCCC
Q 029556 124 NHVIRKITNLDHG 136 (191)
Q Consensus 124 n~rIr~i~~~~~~ 136 (191)
.+.|+..|.....
T Consensus 309 d~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 309 DGTIRVWDLETGS 321 (456)
T ss_pred CccEEEEECCCCc
Confidence 7888888886654
No 93
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=45.28 E-value=29 Score=32.43 Aligned_cols=36 Identities=25% Similarity=0.467 Sum_probs=29.7
Q ss_pred ccccCCCceEEEcCC-CCEEEEeCCCC-------------------EEEEEeCCCC
Q 029556 100 SARFDKPKSFAVDMK-GNIYVADKSNH-------------------VIRKITNLDH 135 (191)
Q Consensus 100 ~a~f~~P~gIavD~~-G~iyVaD~~n~-------------------rIr~i~~~~~ 135 (191)
...|+.|.+|++++. |.+|++-+.|. +|.++++++.
T Consensus 346 AT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~ 401 (524)
T PF05787_consen 346 ATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGN 401 (524)
T ss_pred cccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCC
Confidence 457999999999986 89999987777 7888887543
No 94
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=43.90 E-value=1.6e+02 Score=23.10 Aligned_cols=67 Identities=18% Similarity=0.147 Sum_probs=38.9
Q ss_pred CCCeEEEEeCCCCeEEEEecCCCCCceEEEEe-cCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCCCEEEEEeCC
Q 029556 55 GSSDLIVLDSSRSAFYTLSFPLSEESVVKRLA-GDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNL 133 (191)
Q Consensus 55 ~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~a-G~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n~rIr~i~~~ 133 (191)
.++.+|+....+ +++.+|. .+|++..-. ....+ .+.+..+...+++ .+.+|++.. +..|+.+++.
T Consensus 75 ~~~~v~v~~~~~-~l~~~d~---~tG~~~W~~~~~~~~--------~~~~~~~~~~~~~-~~~~~~~~~-~g~l~~~d~~ 140 (238)
T PF13360_consen 75 DGGRVYVGTSDG-SLYALDA---KTGKVLWSIYLTSSP--------PAGVRSSSSPAVD-GDRLYVGTS-SGKLVALDPK 140 (238)
T ss_dssp ETTEEEEEETTS-EEEEEET---TTSCEEEEEEE-SSC--------TCSTB--SEEEEE-TTEEEEEET-CSEEEEEETT
T ss_pred ccccccccccee-eeEeccc---CCcceeeeecccccc--------ccccccccCceEe-cCEEEEEec-cCcEEEEecC
Confidence 578899888555 9999985 578776653 22110 1113344455555 334566554 5677778875
Q ss_pred CC
Q 029556 134 DH 135 (191)
Q Consensus 134 ~~ 135 (191)
++
T Consensus 141 tG 142 (238)
T PF13360_consen 141 TG 142 (238)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 95
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=43.39 E-value=3.2e+02 Score=26.98 Aligned_cols=74 Identities=24% Similarity=0.171 Sum_probs=48.8
Q ss_pred CeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCC-CCEEEEeCCC
Q 029556 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMK-GNIYVADKSN 124 (191)
Q Consensus 46 ~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~-G~iyVaD~~n 124 (191)
++..+.++..++.+|-+|....+|.+...+ ......+.+. ....|.++++|-- +++|.+|..+
T Consensus 438 ~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~---~~~~~~~~~~-------------g~~~~~~lavD~~~~~~y~tDe~~ 501 (877)
T KOG1215|consen 438 NAVALDFDVLNNRIYWADLSDEKICRASQD---GSSECELCGD-------------GLCIPEGLAVDWIGDNIYWTDEGN 501 (877)
T ss_pred cceEEEEEecCCEEEEEeccCCeEeeeccC---CCccceEecc-------------CccccCcEEEEeccCCceecccCC
Confidence 334444433466888888888888877641 1111222322 2346899999986 6899999999
Q ss_pred CEEEEEeCCCC
Q 029556 125 HVIRKITNLDH 135 (191)
Q Consensus 125 ~rIr~i~~~~~ 135 (191)
+.|.+.+..+.
T Consensus 502 ~~i~v~~~~g~ 512 (877)
T KOG1215|consen 502 CLIEVADLDGS 512 (877)
T ss_pred ceeEEEEccCC
Confidence 99999885443
No 96
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=42.69 E-value=35 Score=31.47 Aligned_cols=70 Identities=21% Similarity=0.155 Sum_probs=49.9
Q ss_pred CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCC-ccCCCCCCcccccCCCceEEEcCCCCEEEEeCC
Q 029556 45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGV-QGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS 123 (191)
Q Consensus 45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~-~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~ 123 (191)
.=|++..++ .+++-+++|-.-|.+.+++. +.+...+..|.+. +|. ...-|..|...++-++|.|+++|..
T Consensus 168 qvhyg~t~d-f~~~~d~TgV~mH~t~kp~p---kla~~~L~l~~~tvp~~-----~~~~f~~~tsc~v~~n~~ihvfa~r 238 (501)
T KOG3567|consen 168 QVHYGLTID-FDGNYDVTGVGMHQTEKPQP---KLAKTMLLLGDGTVPGE-----GTKHFETPTSCAVEENGPIHVFAYR 238 (501)
T ss_pred EeccccccC-CCCCcccccceeeeeccCCc---hhhceEEeecCCccCCC-----CccccCCCceEEEecCcceeeEEee
Confidence 446777774 58899999999999999874 3444445554432 211 2456888999999999999999854
No 97
>COG5341 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.53 E-value=1.5e+02 Score=22.51 Aligned_cols=63 Identities=14% Similarity=0.115 Sum_probs=30.2
Q ss_pred chhHHHHhheeeeeeeccCccE--EecCCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEE
Q 029556 5 FVYSSLAITLLSLLFSLVSSGL--LLEDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTL 72 (191)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~g~l--~~~dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~ 72 (191)
||+|++.++++++. .-..|+. ..-||-..+++--. ..|+...+..++|..=-..-.+++|+..
T Consensus 20 iI~sf~~i~~f~~a-~~~kG~~A~i~v~Gk~~r~i~l~----Kg~~t~~v~~~~g~~n~vev~g~~IRV~ 84 (132)
T COG5341 20 IILSFLPILLFSLA-KAKKGAVAEISVDGKVIRTIPLT----KGNETFDVKENGGFYNKVEVKGNRIRVV 84 (132)
T ss_pred HHHHHHHHHhheee-eccCCcEEEEEECCEEEEEEEcc----cCCccEEEEcCCCceEEEEEcCCEEEEE
Confidence 56677766666544 5555522 44466555554321 1345555532333322233344455544
No 98
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=42.51 E-value=55 Score=18.78 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=16.7
Q ss_pred eEEEcCCCCEEEEeCCCCEEEEEeCC
Q 029556 108 SFAVDMKGNIYVADKSNHVIRKITNL 133 (191)
Q Consensus 108 gIavD~~G~iyVaD~~n~rIr~i~~~ 133 (191)
+++++ +|.+|+.+. ++++..++++
T Consensus 16 ~~~v~-~g~vyv~~~-dg~l~ald~~ 39 (40)
T PF13570_consen 16 SPAVA-GGRVYVGTG-DGNLYALDAA 39 (40)
T ss_dssp --EEC-TSEEEEE-T-TSEEEEEETT
T ss_pred CCEEE-CCEEEEEcC-CCEEEEEeCC
Confidence 34666 578999986 6789988875
No 99
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=41.96 E-value=77 Score=28.70 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=24.7
Q ss_pred CCeeeEEEecCCCeEEEEeCC-CCeEEEEec
Q 029556 45 INPHSVIDRPGSSDLIVLDSS-RSAFYTLSF 74 (191)
Q Consensus 45 ~~P~gIav~d~~g~lyVaD~~-n~~I~~~d~ 74 (191)
.+|.+|++. ++|-|||+|-. +.+|+|+..
T Consensus 367 gR~~dV~v~-~DGallv~~D~~~g~i~Rv~~ 396 (399)
T COG2133 367 GRPRDVAVA-PDGALLVLTDQGDGRILRVSY 396 (399)
T ss_pred CcccceEEC-CCCeEEEeecCCCCeEEEecC
Confidence 699999994 89999988877 669999863
No 100
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=40.59 E-value=2.3e+02 Score=24.05 Aligned_cols=71 Identities=20% Similarity=0.254 Sum_probs=37.3
Q ss_pred CCeEEEEeCCCCeEEEEecCCCCCceEEEEecC---CCccCCCCCCcccccCCCceEEEcCCCC--EEEEeCCCCEE--E
Q 029556 56 SSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGD---GVQGYSDGEPGSARFDKPKSFAVDMKGN--IYVADKSNHVI--R 128 (191)
Q Consensus 56 ~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~---~~~G~~DG~~~~a~f~~P~gIavD~~G~--iyVaD~~n~rI--r 128 (191)
+|.+|..-.+.+.|.|+++. .+ +.++. ...++.+-.+-...=..=..+++|++|- ||-+...++.| -
T Consensus 77 nGs~yynk~~t~~ivky~l~---~~---~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv~s 150 (249)
T KOG3545|consen 77 NGSLYYNKAGTRNIIKYDLE---TR---TVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIVLS 150 (249)
T ss_pred cceEEeeccCCcceEEEEee---cc---eeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCcEEee
Confidence 77888888888889999862 21 12221 1122221111000001225689999884 55555444433 4
Q ss_pred EEeC
Q 029556 129 KITN 132 (191)
Q Consensus 129 ~i~~ 132 (191)
|++|
T Consensus 151 kLdp 154 (249)
T KOG3545|consen 151 KLDP 154 (249)
T ss_pred ccCH
Confidence 6666
No 101
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=39.65 E-value=2.6e+02 Score=24.42 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=15.5
Q ss_pred eeEEEecCCCeEEEEeC----CCCeEEEEec
Q 029556 48 HSVIDRPGSSDLIVLDS----SRSAFYTLSF 74 (191)
Q Consensus 48 ~gIav~d~~g~lyVaD~----~n~~I~~~d~ 74 (191)
+++.- +++..||.++. +.++|-++|.
T Consensus 55 Hg~fs-~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 55 HGVFS-PDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred CEEEc-CCCCEEEEeccccCCCcEEEEEEEC
Confidence 34433 56777887743 4466666664
No 102
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=39.51 E-value=2.4e+02 Score=24.66 Aligned_cols=70 Identities=6% Similarity=-0.019 Sum_probs=46.7
Q ss_pred CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCC
Q 029556 45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN 124 (191)
Q Consensus 45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n 124 (191)
+.--.||++++++.+.++-+..+++..+|. .+|++... ..+..-.|++...+| |++-++.
T Consensus 217 ~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~---~tg~~~~~---------------~~l~D~cGva~~~~~--f~~ssG~ 276 (305)
T PF07433_consen 217 GYIGSIAADRDGRLIAVTSPRGGRVAVWDA---ATGRLLGS---------------VPLPDACGVAPTDDG--FLVSSGQ 276 (305)
T ss_pred CceEEEEEeCCCCEEEEECCCCCEEEEEEC---CCCCEeec---------------cccCceeeeeecCCc--eEEeCCC
Confidence 344678886445567788888899999874 35543332 234445688888777 6666677
Q ss_pred CEEEEEeCCC
Q 029556 125 HVIRKITNLD 134 (191)
Q Consensus 125 ~rIr~i~~~~ 134 (191)
+.+..+++.+
T Consensus 277 G~~~~~~~~~ 286 (305)
T PF07433_consen 277 GQLIRLSPDG 286 (305)
T ss_pred ccEEEccCcc
Confidence 7787777654
No 103
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=39.06 E-value=1.6e+02 Score=27.76 Aligned_cols=70 Identities=16% Similarity=0.216 Sum_probs=50.4
Q ss_pred CCe-eeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCC-ceEEEcCCCCEEEEeC
Q 029556 45 INP-HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKP-KSFAVDMKGNIYVADK 122 (191)
Q Consensus 45 ~~P-~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P-~gIavD~~G~iyVaD~ 122 (191)
..| .|||++|.+..|+|+-....+|+.+|... ......++ ...| ..+++.++|.+.+|-.
T Consensus 208 sAP~~gicfspsne~l~vsVG~Dkki~~yD~~s--~~s~~~l~----------------y~~Plstvaf~~~G~~L~aG~ 269 (673)
T KOG4378|consen 208 SAPCRGICFSPSNEALLVSVGYDKKINIYDIRS--QASTDRLT----------------YSHPLSTVAFSECGTYLCAGN 269 (673)
T ss_pred cCCcCcceecCCccceEEEecccceEEEeeccc--ccccceee----------------ecCCcceeeecCCceEEEeec
Confidence 345 89999988999999999999999998421 11111111 1122 3578888899999998
Q ss_pred CCCEEEEEeC
Q 029556 123 SNHVIRKITN 132 (191)
Q Consensus 123 ~n~rIr~i~~ 132 (191)
.+++|..+|.
T Consensus 270 s~G~~i~YD~ 279 (673)
T KOG4378|consen 270 SKGELIAYDM 279 (673)
T ss_pred CCceEEEEec
Confidence 9999988887
No 104
>PRK02889 tolB translocation protein TolB; Provisional
Probab=38.37 E-value=2.9e+02 Score=24.59 Aligned_cols=52 Identities=13% Similarity=0.209 Sum_probs=28.4
Q ss_pred cCCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEe-C-CCCeEEEEecCCCCCceEEEEe
Q 029556 29 EDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLD-S-SRSAFYTLSFPLSEESVVKRLA 86 (191)
Q Consensus 29 ~dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD-~-~n~~I~~~d~~~~~~g~v~~~a 86 (191)
.||...+++..... .-...+++|++..|+++. . ++..|+.+++ .+|+...+.
T Consensus 183 ~dG~~~~~l~~~~~---~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl---~~g~~~~l~ 236 (427)
T PRK02889 183 ADGQNAQSALSSPE---PIISPAWSPDGTKLAYVSFESKKPVVYVHDL---ATGRRRVVA 236 (427)
T ss_pred CCCCCceEeccCCC---CcccceEcCCCCEEEEEEccCCCcEEEEEEC---CCCCEEEee
Confidence 35655555443322 223567876666665543 2 3467998886 355555443
No 105
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=37.77 E-value=3.1e+02 Score=24.76 Aligned_cols=71 Identities=15% Similarity=0.195 Sum_probs=48.2
Q ss_pred eeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCc-eEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCCC
Q 029556 47 PHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEES-VVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH 125 (191)
Q Consensus 47 P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g-~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n~ 125 (191)
-.+++++ +++...++=....+|+.++. ..++ .+.++.|-. +....+++.++|++.++=...+
T Consensus 206 v~~~~fs-~d~~~l~s~s~D~tiriwd~--~~~~~~~~~l~gH~--------------~~v~~~~f~p~g~~i~Sgs~D~ 268 (456)
T KOG0266|consen 206 VSDVAFS-PDGSYLLSGSDDKTLRIWDL--KDDGRNLKTLKGHS--------------TYVTSVAFSPDGNLLVSGSDDG 268 (456)
T ss_pred eeeeEEC-CCCcEEEEecCCceEEEeec--cCCCeEEEEecCCC--------------CceEEEEecCCCCEEEEecCCC
Confidence 4778886 66777777777888888875 1233 355554432 2347788888888887777777
Q ss_pred EEEEEeCCC
Q 029556 126 VIRKITNLD 134 (191)
Q Consensus 126 rIr~i~~~~ 134 (191)
.||..+...
T Consensus 269 tvriWd~~~ 277 (456)
T KOG0266|consen 269 TVRIWDVRT 277 (456)
T ss_pred cEEEEeccC
Confidence 777777654
No 106
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=37.72 E-value=72 Score=17.48 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=20.3
Q ss_pred CCceEEEcCCCCEEEEeCCCCEEEEEe
Q 029556 105 KPKSFAVDMKGNIYVADKSNHVIRKIT 131 (191)
Q Consensus 105 ~P~gIavD~~G~iyVaD~~n~rIr~i~ 131 (191)
....|++.++++.+++=..++.|+.++
T Consensus 13 ~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 13 SINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred cEEEEEEecccccceeeCCCCEEEEEC
Confidence 456788888888777766777887764
No 107
>PRK03629 tolB translocation protein TolB; Provisional
Probab=35.82 E-value=3.2e+02 Score=24.37 Aligned_cols=50 Identities=30% Similarity=0.302 Sum_probs=27.4
Q ss_pred CCcEEEEEEcCccCCCCeeeEEEecCCCeEE-EEe-CCCCeEEEEecCCCCCceEEEE
Q 029556 30 DGYTVTTVIDGHQLEINPHSVIDRPGSSDLI-VLD-SSRSAFYTLSFPLSEESVVKRL 85 (191)
Q Consensus 30 dGy~~~~~~~G~~~~~~P~gIav~d~~g~ly-VaD-~~n~~I~~~d~~~~~~g~v~~~ 85 (191)
||...+.+..+.. .-...+++|++..|. ++. .+...|+..++ ..|+.+.+
T Consensus 187 dg~~~~~lt~~~~---~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl---~~G~~~~l 238 (429)
T PRK03629 187 DGYNQFVVHRSPQ---PLMSPAWSPDGSKLAYVTFESGRSALVIQTL---ANGAVRQV 238 (429)
T ss_pred CCCCCEEeecCCC---ceeeeEEcCCCCEEEEEEecCCCcEEEEEEC---CCCCeEEc
Confidence 4555555544432 345678876655554 443 34567888775 34554443
No 108
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=34.87 E-value=2.4e+02 Score=27.54 Aligned_cols=71 Identities=13% Similarity=0.181 Sum_probs=44.9
Q ss_pred CeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCce-EEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCC
Q 029556 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESV-VKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN 124 (191)
Q Consensus 46 ~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~-v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n 124 (191)
.-..++++| .|.-..+=...+.|...|+ .+|+ +..+.|.. +.-..+.+..+|++.+++.++
T Consensus 579 ~V~al~~Sp-~Gr~LaSg~ed~~I~iWDl---~~~~~v~~l~~Ht--------------~ti~SlsFS~dg~vLasgg~D 640 (707)
T KOG0263|consen 579 PVTALAFSP-CGRYLASGDEDGLIKIWDL---ANGSLVKQLKGHT--------------GTIYSLSFSRDGNVLASGGAD 640 (707)
T ss_pred ceEEEEEcC-CCceEeecccCCcEEEEEc---CCCcchhhhhccc--------------CceeEEEEecCCCEEEecCCC
Confidence 347788874 4444444445556666665 3433 22332221 123568888899999999999
Q ss_pred CEEEEEeCCC
Q 029556 125 HVIRKITNLD 134 (191)
Q Consensus 125 ~rIr~i~~~~ 134 (191)
+.||..|...
T Consensus 641 nsV~lWD~~~ 650 (707)
T KOG0263|consen 641 NSVRLWDLTK 650 (707)
T ss_pred CeEEEEEchh
Confidence 9999988743
No 109
>PRK05137 tolB translocation protein TolB; Provisional
Probab=34.03 E-value=3.4e+02 Score=24.10 Aligned_cols=43 Identities=21% Similarity=0.309 Sum_probs=22.1
Q ss_pred cCCcEEEEEEcCccCCCCeeeEEEecCCCeEE-EEeC-CCCeEEEEec
Q 029556 29 EDGYTVTTVIDGHQLEINPHSVIDRPGSSDLI-VLDS-SRSAFYTLSF 74 (191)
Q Consensus 29 ~dGy~~~~~~~G~~~~~~P~gIav~d~~g~ly-VaD~-~n~~I~~~d~ 74 (191)
.||...+.+..+.. .-...+++|++..|. +++. ++..|+..++
T Consensus 189 ~dg~~~~~lt~~~~---~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl 233 (435)
T PRK05137 189 QDGANVRYLTDGSS---LVLTPRFSPNRQEITYMSYANGRPRVYLLDL 233 (435)
T ss_pred CCCCCcEEEecCCC---CeEeeEECCCCCEEEEEEecCCCCEEEEEEC
Confidence 35666655544332 234566765554444 3332 3456777765
No 110
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=32.58 E-value=5.1e+02 Score=25.77 Aligned_cols=69 Identities=12% Similarity=0.224 Sum_probs=45.9
Q ss_pred eeEEEecCCCeEEEEeCC-CCeEEEEecCCCCCceEEEE-ecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCCC
Q 029556 48 HSVIDRPGSSDLIVLDSS-RSAFYTLSFPLSEESVVKRL-AGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH 125 (191)
Q Consensus 48 ~gIav~d~~g~lyVaD~~-n~~I~~~d~~~~~~g~v~~~-aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n~ 125 (191)
..+|+ |+.|++.+|-.. .-.|+..++ +.|+..-+ .|.. | --.++++++.|++..+-+...
T Consensus 439 scvav-D~sGelV~AG~~d~F~IfvWS~---qTGqllDiLsGHE------g--------PVs~l~f~~~~~~LaS~SWDk 500 (893)
T KOG0291|consen 439 SCVAV-DPSGELVCAGAQDSFEIFVWSV---QTGQLLDILSGHE------G--------PVSGLSFSPDGSLLASGSWDK 500 (893)
T ss_pred eEEEE-cCCCCEEEeeccceEEEEEEEe---ecCeeeehhcCCC------C--------cceeeEEccccCeEEeccccc
Confidence 56778 467777766444 445777775 46764443 3432 2 135789999999888888888
Q ss_pred EEEEEeCCC
Q 029556 126 VIRKITNLD 134 (191)
Q Consensus 126 rIr~i~~~~ 134 (191)
.||..+--+
T Consensus 501 TVRiW~if~ 509 (893)
T KOG0291|consen 501 TVRIWDIFS 509 (893)
T ss_pred eEEEEEeec
Confidence 888887633
No 111
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=32.09 E-value=3.5e+02 Score=23.70 Aligned_cols=43 Identities=14% Similarity=0.116 Sum_probs=30.1
Q ss_pred cCCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCCCCeEEEEecC
Q 029556 29 EDGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSSRSAFYTLSFP 75 (191)
Q Consensus 29 ~dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~ 75 (191)
.|. .+-+++.|- ...-..++++ +.++.+++-+...+|+..|+.
T Consensus 88 ~dN-kylRYF~GH--~~~V~sL~~s-P~~d~FlS~S~D~tvrLWDlR 130 (311)
T KOG1446|consen 88 HDN-KYLRYFPGH--KKRVNSLSVS-PKDDTFLSSSLDKTVRLWDLR 130 (311)
T ss_pred ecC-ceEEEcCCC--CceEEEEEec-CCCCeEEecccCCeEEeeEec
Confidence 344 444555553 2456888896 556999998888889888874
No 112
>PRK01742 tolB translocation protein TolB; Provisional
Probab=32.07 E-value=3.6e+02 Score=23.90 Aligned_cols=50 Identities=20% Similarity=0.164 Sum_probs=27.0
Q ss_pred CCcEEEEEEcCccCCCCeeeEEEecCCCeEEEE-eC-CCCeEEEEecCCCCCceEEEE
Q 029556 30 DGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVL-DS-SRSAFYTLSFPLSEESVVKRL 85 (191)
Q Consensus 30 dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVa-D~-~n~~I~~~d~~~~~~g~v~~~ 85 (191)
||....++..+.. .-..++++|++..|..+ +. .+..|+..++ .+|..+.+
T Consensus 192 dg~~~~~lt~~~~---~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl---~tg~~~~l 243 (429)
T PRK01742 192 DGFNQFIVNRSSQ---PLMSPAWSPDGSKLAYVSFENKKSQLVVHDL---RSGARKVV 243 (429)
T ss_pred CCCCceEeccCCC---ccccceEcCCCCEEEEEEecCCCcEEEEEeC---CCCceEEE
Confidence 5655544433322 33667887666666544 32 3457888875 34544444
No 113
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=32.03 E-value=3.2e+02 Score=23.26 Aligned_cols=28 Identities=18% Similarity=0.358 Sum_probs=18.5
Q ss_pred CceEEEcCCCCEEEEe-----------CCCCEEEEEeCC
Q 029556 106 PKSFAVDMKGNIYVAD-----------KSNHVIRKITNL 133 (191)
Q Consensus 106 P~gIavD~~G~iyVaD-----------~~n~rIr~i~~~ 133 (191)
-..+++|+.|.+.++- .++..|+++-|.
T Consensus 234 vaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~ph 272 (350)
T KOG0641|consen 234 VAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPH 272 (350)
T ss_pred eEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCC
Confidence 4568999999887752 345556666663
No 114
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=31.41 E-value=4.4e+02 Score=24.59 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=22.1
Q ss_pred CCCCEEEEeCC-CCEEEEEeCCCCCceEEEEeccCCCceEecc
Q 029556 113 MKGNIYVADKS-NHVIRKITNLDHGNQLIRQINLKPEDCSKSS 154 (191)
Q Consensus 113 ~~G~iyVaD~~-n~rIr~i~~~~~~~~~i~~i~~~~~~~~~~~ 154 (191)
..|++|+.|-. |++++++.-++....+--.+++.+.=.+.++
T Consensus 364 ~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS 406 (514)
T KOG2055|consen 364 GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGS 406 (514)
T ss_pred CCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEecc
Confidence 35677777733 5666666655544444444444444334333
No 115
>PF05474 Semenogelin: Semenogelin; InterPro: IPR008836 This family consists of several mammalian semenogelin (I and II) proteins. Freshly ejaculated Homo sapiens semen has the appearance of a loose gel in which the predominant structural protein components are the seminal vesicle secreted semenogelins (Sg) [].; GO: 0005198 structural molecule activity, 0019953 sexual reproduction, 0005576 extracellular region, 0030141 stored secretory granule
Probab=29.63 E-value=27 Score=32.41 Aligned_cols=13 Identities=54% Similarity=0.565 Sum_probs=10.0
Q ss_pred CCc--cchhHHHHhh
Q 029556 1 MAS--HFVYSSLAIT 13 (191)
Q Consensus 1 ~~~--~~~~~~~~~~ 13 (191)
||+ ||++|+||||
T Consensus 1 MK~~I~F~lSLLLiL 15 (582)
T PF05474_consen 1 MKSIIFFVLSLLLIL 15 (582)
T ss_pred CCceeehHHHHHHHH
Confidence 777 7778887776
No 116
>TIGR03656 IsdC heme uptake protein IsdC. Isd proteins are iron-regulated surface proteins found in Bacillus, Staphylococcus and Listeria species and are responsible for heme scavenging from hemoproteins. The IsdC protein consists of an N-terminal hydrophobic signal sequence, a central NEAT (NEAr Transporter, pfam05031) domain which confers the ability to bind heme and a C-terminal SrtB processing signal which targets the protein to the cell wall. IsdC is believed to make a direct contact with, and transfer heme to, the heme-binding component (IsdE) of an ABC transporter in the cytoplasmic membrane, and to receive heme from other NEAT-containing heme-binding proteins also localized in the cell wall.
Probab=29.55 E-value=1.1e+02 Score=25.41 Aligned_cols=40 Identities=20% Similarity=0.318 Sum_probs=23.4
Q ss_pred cEEecCC-cEEEEEE--cCcc-------CCCCeeeEEEecCCCeEEEEeCCC
Q 029556 25 GLLLEDG-YTVTTVI--DGHQ-------LEINPHSVIDRPGSSDLIVLDSSR 66 (191)
Q Consensus 25 ~l~~~dG-y~~~~~~--~G~~-------~~~~P~gIav~d~~g~lyVaD~~n 66 (191)
+-.++|| |.+.... ++.. -..+|--+.+. +|..||.=+-+
T Consensus 26 ~~~L~DGtYsV~fkVlK~~tde~Smmn~Y~~kPAkv~Vk--nGK~~Vt~Tl~ 75 (217)
T TIGR03656 26 SANLADGTYTINYTVYKADNDSASMANDYFEKPAKLIVK--NGKMTVQITVN 75 (217)
T ss_pred cccccCceEEEEEEEEeCCCCchhhHHhhccCCcEEEEE--CCEEEEEEEEe
Confidence 4478898 4444322 3332 13678888883 67766654443
No 117
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=29.47 E-value=5.8e+02 Score=25.42 Aligned_cols=98 Identities=10% Similarity=0.119 Sum_probs=47.3
Q ss_pred eEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCCCEEE
Q 029556 49 SVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIR 128 (191)
Q Consensus 49 gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n~rIr 128 (191)
++.++ .+|+-.++..+| |+.++|+. .|...+...... ..-.++++.++|.+.++--..++..
T Consensus 19 nl~ft-~dG~sviSPvGN-rvsv~dLk--nN~S~Tl~~e~~--------------~NI~~ialSp~g~lllavdE~g~~~ 80 (893)
T KOG0291|consen 19 NLVFT-KDGNSVISPVGN-RVSVFDLK--NNKSYTLPLETR--------------YNITRIALSPDGTLLLAVDERGRAL 80 (893)
T ss_pred cEEEC-CCCCEEEeccCC-EEEEEEcc--CCcceeEEeecC--------------CceEEEEeCCCceEEEEEcCCCcEE
Confidence 45664 566655665544 77777762 223344433221 0345677777777665433333333
Q ss_pred EEeCCCCCceEEEEeccC-CCceEeccCCCCccEEEEEecC
Q 029556 129 KITNLDHGNQLIRQINLK-PEDCSKSSQSGSGMFWVTVFSP 168 (191)
Q Consensus 129 ~i~~~~~~~~~i~~i~~~-~~~~~~~~~~g~~~~~~~~~~~ 168 (191)
-++...+ ..+..+.++ +-.|...++.| .+++++.+.
T Consensus 81 lvs~~~r--~Vlh~f~fk~~v~~i~fSPng--~~fav~~gn 117 (893)
T KOG0291|consen 81 LVSLLSR--SVLHRFNFKRGVGAIKFSPNG--KFFAVGCGN 117 (893)
T ss_pred EEecccc--eeeEEEeecCccceEEECCCC--cEEEEEecc
Confidence 3443322 344444444 33444333333 455554443
No 118
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=29.28 E-value=82 Score=28.39 Aligned_cols=75 Identities=13% Similarity=0.120 Sum_probs=49.2
Q ss_pred CCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCC
Q 029556 44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKS 123 (191)
Q Consensus 44 ~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~ 123 (191)
...+++|+++| +...|++-...+++|.+|+..- ..-+.++-|.. +| -..+.+.+.|.=+|+-+.
T Consensus 229 ~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l-~~p~~v~~dhv----------sA----V~dVdfsptG~Efvsgsy 292 (433)
T KOG0268|consen 229 TMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNL-SRPLNVHKDHV----------SA----VMDVDFSPTGQEFVSGSY 292 (433)
T ss_pred eccccceecCc-cccceeeccccccceehhhhhh-cccchhhcccc----------ee----EEEeccCCCcchhccccc
Confidence 46899999975 8888998889999999986310 11111211111 11 234566677888888777
Q ss_pred CCEEEEEeCCC
Q 029556 124 NHVIRKITNLD 134 (191)
Q Consensus 124 n~rIr~i~~~~ 134 (191)
...||.+....
T Consensus 293 DksIRIf~~~~ 303 (433)
T KOG0268|consen 293 DKSIRIFPVNH 303 (433)
T ss_pred cceEEEeecCC
Confidence 78888887643
No 119
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=28.69 E-value=2.2e+02 Score=20.25 Aligned_cols=21 Identities=14% Similarity=0.196 Sum_probs=15.5
Q ss_pred CCceEEEcCCCCEEEEeCCCC
Q 029556 105 KPKSFAVDMKGNIYVADKSNH 125 (191)
Q Consensus 105 ~P~gIavD~~G~iyVaD~~n~ 125 (191)
.+..+.+.++|++.+-|..+.
T Consensus 86 ~~~~~~L~ddGnlvl~~~~~~ 106 (114)
T smart00108 86 GNYVLVLLDDGNLVIYDSDGN 106 (114)
T ss_pred CceEEEEeCCCCEEEECCCCC
Confidence 356678888899888886554
No 120
>PRK04922 tolB translocation protein TolB; Provisional
Probab=28.64 E-value=4.2e+02 Score=23.51 Aligned_cols=36 Identities=22% Similarity=0.233 Sum_probs=20.9
Q ss_pred eeEEEecCCCeEEEEe-C-CCCeEEEEecCCCCCceEEEEe
Q 029556 48 HSVIDRPGSSDLIVLD-S-SRSAFYTLSFPLSEESVVKRLA 86 (191)
Q Consensus 48 ~gIav~d~~g~lyVaD-~-~n~~I~~~d~~~~~~g~v~~~a 86 (191)
...+++|++..|+++. . +++.|+++++ .+|+...+.
T Consensus 207 ~~p~wSpDg~~la~~s~~~~~~~l~~~dl---~~g~~~~l~ 244 (433)
T PRK04922 207 LSPAWSPDGKKLAYVSFERGRSAIYVQDL---ATGQRELVA 244 (433)
T ss_pred ccccCCCCCCEEEEEecCCCCcEEEEEEC---CCCCEEEec
Confidence 4556776555666543 2 3457888886 345554443
No 121
>PRK00178 tolB translocation protein TolB; Provisional
Probab=28.16 E-value=4.1e+02 Score=23.30 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=27.7
Q ss_pred CCcEEEEEEcCccCCCCeeeEEEecCCCeE-EEEeC-CCCeEEEEecCCCCCceEEEE
Q 029556 30 DGYTVTTVIDGHQLEINPHSVIDRPGSSDL-IVLDS-SRSAFYTLSFPLSEESVVKRL 85 (191)
Q Consensus 30 dGy~~~~~~~G~~~~~~P~gIav~d~~g~l-yVaD~-~n~~I~~~d~~~~~~g~v~~~ 85 (191)
||...+.+..+.. .....+++|++..| |+++. ++..|+++++ .+|+...+
T Consensus 187 ~g~~~~~l~~~~~---~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l---~~g~~~~l 238 (430)
T PRK00178 187 DGARAVTLLQSRE---PILSPRWSPDGKRIAYVSFEQKRPRIFVQNL---DTGRREQI 238 (430)
T ss_pred CCCCceEEecCCC---ceeeeeECCCCCEEEEEEcCCCCCEEEEEEC---CCCCEEEc
Confidence 4544444433322 33666787666666 45544 3467888886 34554444
No 122
>PF11466 Doppel: Prion-like protein Doppel; InterPro: IPR021566 Dpl is a homologue related to the prion protein (PrP). Dpl is toxic to neurons and is expressed in the brains of mice that do not express PrP. In DHPC and SDS micelles, Dpl shoes about 40% alpha-helical structure however in aqueous solution it consists of a random coil. The alpha helical segment can adopt a transmembrane localisation also in a membrane. The unprocessed Dpl protein is thought to posses a possible channel formation mechanism which may be related to toxicity through direct interaction with cell membranes and damage to the cell membrane. ; PDB: 1Z65_A.
Probab=27.83 E-value=8.9 Score=21.62 Aligned_cols=24 Identities=33% Similarity=0.192 Sum_probs=14.9
Q ss_pred CCccchhHHHHhheeeeeeeccCc
Q 029556 1 MASHFVYSSLAITLLSLLFSLVSS 24 (191)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g 24 (191)
|+.|.----|+|+|++|+++++..
T Consensus 1 Mrk~Lg~~~lAi~c~LL~s~Ls~V 24 (30)
T PF11466_consen 1 MRKHLGGWWLAIVCVLLFSHLSSV 24 (30)
T ss_dssp --SS-SSHHHHHHHHHHHHHTTTT
T ss_pred CccchhhHHHHHHHHHHHHHhhHH
Confidence 555544446888888888887754
No 123
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=27.40 E-value=4e+02 Score=22.84 Aligned_cols=78 Identities=14% Similarity=0.150 Sum_probs=43.4
Q ss_pred eeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCCCEE
Q 029556 48 HSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVI 127 (191)
Q Consensus 48 ~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n~rI 127 (191)
..+++ .++.+|+.+ .+++++.+|. .+|+..+-.-. .+ ......| ++. .+.+|+.+. ++.|
T Consensus 273 ~~p~~--~~~~vyv~~-~~G~l~~~d~---~tG~~~W~~~~--~~-------~~~~ssp---~i~-g~~l~~~~~-~G~l 332 (377)
T TIGR03300 273 QGPAV--DDNRLYVTD-ADGVVVALDR---RSGSELWKNDE--LK-------YRQLTAP---AVV-GGYLVVGDF-EGYL 332 (377)
T ss_pred cCceE--eCCEEEEEC-CCCeEEEEEC---CCCcEEEcccc--cc-------CCccccC---EEE-CCEEEEEeC-CCEE
Confidence 34445 367888886 5678888885 45654432100 00 0112233 222 467888874 5688
Q ss_pred EEEeCCCCCceEEEEeccCC
Q 029556 128 RKITNLDHGNQLIRQINLKP 147 (191)
Q Consensus 128 r~i~~~~~~~~~i~~i~~~~ 147 (191)
..+++.++ +.+....+..
T Consensus 333 ~~~d~~tG--~~~~~~~~~~ 350 (377)
T TIGR03300 333 HWLSREDG--SFVARLKTDG 350 (377)
T ss_pred EEEECCCC--CEEEEEEcCC
Confidence 88988654 4444555443
No 124
>PRK12690 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=26.72 E-value=3.4e+02 Score=22.56 Aligned_cols=79 Identities=15% Similarity=0.136 Sum_probs=38.9
Q ss_pred CCeeeEEEecCCCeEEEEeCCCCeEEEEecC----CCCCceEEEEecCCCccCCCCCCcccccCCC---ceEEEcCCCCE
Q 029556 45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFP----LSEESVVKRLAGDGVQGYSDGEPGSARFDKP---KSFAVDMKGNI 117 (191)
Q Consensus 45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~----~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P---~gIavD~~G~i 117 (191)
.+|.++|+. .+|.+-|.+....+ +..+ ++++|.+.+-.|...-| ..|. + ..-| ..+.++++|.|
T Consensus 76 g~~lDlAI~-G~GFF~V~~~~G~~---yTR~G~F~~d~~G~Lvt~~G~~vlg-~~g~--p--I~lp~~~~~~~I~~dG~i 146 (238)
T PRK12690 76 GGQFDFAIE-GEGFFMVETPQGER---LTRAGSFTPNAEGELVDPDGNRLLD-AGGA--P--IFIPPDARSVAVGADGTL 146 (238)
T ss_pred CCceeEEEC-CCcEEEEEcCCCCE---EeeCCCeEECCCCCEEcCCCCEeEC-CCCC--c--cccCCCCceEEECCCCeE
Confidence 689999994 67766666544322 2210 12344433322221111 0110 1 2223 47999999999
Q ss_pred EEEeCCCCEEEEEeC
Q 029556 118 YVADKSNHVIRKITN 132 (191)
Q Consensus 118 yVaD~~n~rIr~i~~ 132 (191)
+..+..=.+|..++.
T Consensus 147 ~~~g~~vg~l~lv~~ 161 (238)
T PRK12690 147 SADGQPLGQIGLYQP 161 (238)
T ss_pred EECCeeeeeEEEEec
Confidence 763211234555544
No 125
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=26.72 E-value=5.6e+02 Score=24.35 Aligned_cols=86 Identities=8% Similarity=0.021 Sum_probs=48.9
Q ss_pred CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCC
Q 029556 45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSN 124 (191)
Q Consensus 45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n 124 (191)
+.-+.+.++ ++|..+.+-...++|+.+|- ++|+..-..+.. .++ .| .--.++..+++.=+.+-+..
T Consensus 191 kFV~~VRys-PDG~~Fat~gsDgki~iyDG---ktge~vg~l~~~-~aH-kG--------sIfalsWsPDs~~~~T~SaD 256 (603)
T KOG0318|consen 191 KFVNCVRYS-PDGSRFATAGSDGKIYIYDG---KTGEKVGELEDS-DAH-KG--------SIFALSWSPDSTQFLTVSAD 256 (603)
T ss_pred cceeeEEEC-CCCCeEEEecCCccEEEEcC---CCccEEEEecCC-CCc-cc--------cEEEEEECCCCceEEEecCC
Confidence 456888886 67999999999999999973 455543333321 111 12 23456666666555554454
Q ss_pred CEEEEEeCCCCCceEEEEeccC
Q 029556 125 HVIRKITNLDHGNQLIRQINLK 146 (191)
Q Consensus 125 ~rIr~i~~~~~~~~~i~~i~~~ 146 (191)
..++..+-+.+ ..++++.++
T Consensus 257 kt~KIWdVs~~--slv~t~~~~ 276 (603)
T KOG0318|consen 257 KTIKIWDVSTN--SLVSTWPMG 276 (603)
T ss_pred ceEEEEEeecc--ceEEEeecC
Confidence 55555554332 344444433
No 126
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.57 E-value=7.1e+02 Score=25.50 Aligned_cols=94 Identities=21% Similarity=0.212 Sum_probs=55.9
Q ss_pred CCCeeeEEEecCCCeEEEEeCCCCeEEEEecCCC--------CCceEEEEecCCC-----ccCCCCCCcccccC-CCceE
Q 029556 44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLS--------EESVVKRLAGDGV-----QGYSDGEPGSARFD-KPKSF 109 (191)
Q Consensus 44 ~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~--------~~g~v~~~aG~~~-----~G~~DG~~~~a~f~-~P~gI 109 (191)
.++-.++-+ ++..++.++.+....|+..|++.- .++++=.++-.+. +|+ |++-.--++. .+-..
T Consensus 250 ~nnVssvlf-hp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VFkleRErpa~ 327 (1202)
T KOG0292|consen 250 YNNVSSVLF-HPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVFKLERERPAY 327 (1202)
T ss_pred cCCcceEEe-cCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeec-CCceEEEEEcccCceE
Confidence 356678888 578899999999999999987421 1122222222211 333 3322222333 56677
Q ss_pred EEcCCCCEEEEeCCCCEEEEEeCCCCCceEEEE
Q 029556 110 AVDMKGNIYVADKSNHVIRKITNLDHGNQLIRQ 142 (191)
Q Consensus 110 avD~~G~iyVaD~~n~rIr~i~~~~~~~~~i~~ 142 (191)
|+..++-.|+-| .+||.++......+.+..
T Consensus 328 ~v~~n~LfYvkd---~~i~~~d~~t~~d~~v~~ 357 (1202)
T KOG0292|consen 328 AVNGNGLFYVKD---RFIRSYDLRTQKDTAVAS 357 (1202)
T ss_pred EEcCCEEEEEcc---ceEEeeeccccccceeEe
Confidence 888777777775 679998875543344433
No 127
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=26.10 E-value=4.3e+02 Score=22.79 Aligned_cols=50 Identities=14% Similarity=0.201 Sum_probs=26.1
Q ss_pred CCcEEEEEEcCccCCCCeeeEEEecCCCeEEEEeCC--CCeEEEEecCCCCCceEEEE
Q 029556 30 DGYTVTTVIDGHQLEINPHSVIDRPGSSDLIVLDSS--RSAFYTLSFPLSEESVVKRL 85 (191)
Q Consensus 30 dGy~~~~~~~G~~~~~~P~gIav~d~~g~lyVaD~~--n~~I~~~d~~~~~~g~v~~~ 85 (191)
+|...+.+.+... .-...+++|++..++++... .+.|+.++. .+|....+
T Consensus 178 ~g~~~~~l~~~~~---~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~---~~g~~~~~ 229 (417)
T TIGR02800 178 DGANPQTITRSRE---PILSPAWSPDGQKLAYVSFESGKPEIYVQDL---ATGQREKV 229 (417)
T ss_pred CCCCCEEeecCCC---ceecccCCCCCCEEEEEEcCCCCcEEEEEEC---CCCCEEEe
Confidence 4444444443322 23345677666666655443 367888875 34544444
No 128
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=25.87 E-value=32 Score=26.09 Aligned_cols=11 Identities=55% Similarity=1.243 Sum_probs=8.6
Q ss_pred EEEEEeEeecc
Q 029556 180 LYLYFCSFKGS 190 (191)
Q Consensus 180 ~~~~~~~~~~~ 190 (191)
-|.|+|+|-|-
T Consensus 105 ~Y~f~CSFPGH 115 (125)
T TIGR02695 105 DYTFFCSFPGH 115 (125)
T ss_pred cceEEEcCCCc
Confidence 48899999763
No 129
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=25.73 E-value=1.2e+02 Score=16.15 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=15.0
Q ss_pred CCCCEEEEeCCCCEEEEEeCCCC
Q 029556 113 MKGNIYVADKSNHVIRKITNLDH 135 (191)
Q Consensus 113 ~~G~iyVaD~~n~rIr~i~~~~~ 135 (191)
.+|.+|+++. ++.+..++.+++
T Consensus 5 ~~~~v~~~~~-~g~l~a~d~~~G 26 (33)
T smart00564 5 SDGTVYVGST-DGTLYALDAKTG 26 (33)
T ss_pred ECCEEEEEcC-CCEEEEEEcccC
Confidence 3467887764 578888887553
No 130
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=25.70 E-value=3e+02 Score=23.63 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=27.7
Q ss_pred cccCCC-ceEEEcCCCCEEEEeCCCCEEEEEeCCC
Q 029556 101 ARFDKP-KSFAVDMKGNIYVADKSNHVIRKITNLD 134 (191)
Q Consensus 101 a~f~~P-~gIavD~~G~iyVaD~~n~rIr~i~~~~ 134 (191)
-.|.+| +.+.+.++|+.-.+-..+..||-+|.+.
T Consensus 180 Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~t 214 (307)
T KOG0316|consen 180 DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKET 214 (307)
T ss_pred hhcCCcceeEEecCCCCEEEEeeccceeeecccch
Confidence 344455 5789999999999999999999999854
No 131
>PF09284 RhgB_N: Rhamnogalacturonase B, N-terminal; InterPro: IPR015364 This domain is found in prokaryotic enzyme rhamnogalacturonase B, it adopts a structure consisting of a beta supersandwich, with eighteen strands in two beta-sheets. The exact function of the domain is unknown, but a putative role includes carbohydrate-binding []. ; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=25.15 E-value=4.3e+02 Score=22.43 Aligned_cols=71 Identities=21% Similarity=0.308 Sum_probs=33.6
Q ss_pred CCCEEEEeCCCCEEEEEeCCCCCceEE--EEeccCCCceEeccCCCCc--cEEEEEecCeE-EEeeeeeEEEEEEE
Q 029556 114 KGNIYVADKSNHVIRKITNLDHGNQLI--RQINLKPEDCSKSSQSGSG--MFWVTVFSPYL-ISCKSFWVHLYLYF 184 (191)
Q Consensus 114 ~G~iyVaD~~n~rIr~i~~~~~~~~~i--~~i~~~~~~~~~~~~~g~~--~~~~~~~~~~~-~~~~~~~~~~~~~~ 184 (191)
+|.=||-|++..-+.+++....-.+.+ ++..++...-.-.-.+|+| ...+-..+.|+ +.|+.-...+|+.+
T Consensus 6 sg~~~viDtga~Lvf~V~~s~gDitSi~y~g~ElQ~~~k~ShI~SGLGsatVs~~~~~~~IkVt~~~~tLthyyv~ 81 (249)
T PF09284_consen 6 SGSNYVIDTGAGLVFKVSKSNGDITSIKYNGTELQYSSKNSHINSGLGSATVSITTSGDYIKVTCKTGTLTHYYVA 81 (249)
T ss_dssp -SSEEEEE---TEEEEEETTT--EEEEEETTEE-B-SSS-BEETT--SS-EEEEEEETTEEEEEEE-SSEEEEEEE
T ss_pred cCCcEEEECCCCEEEEEecCCCCeEEEEECCEeeecCCccceeccCCCccEEEEEeeCCEEEEEEEcCCeEEEEEE
Confidence 467788888888888888755422222 2233332222223346777 34444566654 56777776666543
No 132
>COG3241 Azurin [Energy production and conversion]
Probab=24.66 E-value=46 Score=25.33 Aligned_cols=11 Identities=45% Similarity=1.234 Sum_probs=9.3
Q ss_pred EEEEEeEeecc
Q 029556 180 LYLYFCSFKGS 190 (191)
Q Consensus 180 ~~~~~~~~~~~ 190 (191)
+|.++|+|-|.
T Consensus 129 ~Y~FfCtFPGH 139 (151)
T COG3241 129 EYKFFCTFPGH 139 (151)
T ss_pred eEEEEEecCCc
Confidence 79999999773
No 133
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=24.54 E-value=5.7e+02 Score=23.70 Aligned_cols=75 Identities=13% Similarity=0.160 Sum_probs=33.5
Q ss_pred CeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCC--ceEEEEecCCC-ccCCCCCCccccc-CCCceEEEcCCC-CEEEE
Q 029556 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEE--SVVKRLAGDGV-QGYSDGEPGSARF-DKPKSFAVDMKG-NIYVA 120 (191)
Q Consensus 46 ~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~--g~v~~~aG~~~-~G~~DG~~~~a~f-~~P~gIavD~~G-~iyVa 120 (191)
-|.+|-++-++..|||+....+.|+.+|..-..+ -.-++..|... .+-. ......++ ..|.=+-+.-+| .+||+
T Consensus 313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~-~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDH-PVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B---TTS------S----EEE-TTSSEEEEE
T ss_pred ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCC-ccccccccCCCCCeEEEccCCeEEEEE
Confidence 4588888877889999999999999999742111 12233444311 1000 00001122 256666777776 48888
Q ss_pred e
Q 029556 121 D 121 (191)
Q Consensus 121 D 121 (191)
-
T Consensus 392 n 392 (461)
T PF05694_consen 392 N 392 (461)
T ss_dssp -
T ss_pred e
Confidence 4
No 134
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=24.51 E-value=5.3e+02 Score=23.29 Aligned_cols=75 Identities=8% Similarity=-0.040 Sum_probs=47.4
Q ss_pred CeeeEEEecCCCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCCC
Q 029556 46 NPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNH 125 (191)
Q Consensus 46 ~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n~ 125 (191)
.-..+|++ .+|.+.-+-+.+++|.|+=. .++|+...-.-. |. ..-.-..+++++++.+..+-+.+.
T Consensus 175 ~lAalafs-~~G~llATASeKGTVIRVf~--v~~G~kl~eFRR-------G~----~~~~IySL~Fs~ds~~L~~sS~Te 240 (391)
T KOG2110|consen 175 PLAALAFS-PDGTLLATASEKGTVIRVFS--VPEGQKLYEFRR-------GT----YPVSIYSLSFSPDSQFLAASSNTE 240 (391)
T ss_pred ceeEEEEC-CCCCEEEEeccCceEEEEEE--cCCccEeeeeeC-------Cc----eeeEEEEEEECCCCCeEEEecCCC
Confidence 44678885 78888877777777655421 245542222211 21 223456799999999888877788
Q ss_pred EEEEEeCCC
Q 029556 126 VIRKITNLD 134 (191)
Q Consensus 126 rIr~i~~~~ 134 (191)
.|..|..+.
T Consensus 241 TVHiFKL~~ 249 (391)
T KOG2110|consen 241 TVHIFKLEK 249 (391)
T ss_pred eEEEEEecc
Confidence 887776643
No 135
>PRK03629 tolB translocation protein TolB; Provisional
Probab=24.42 E-value=5.1e+02 Score=23.07 Aligned_cols=35 Identities=11% Similarity=0.272 Sum_probs=21.3
Q ss_pred eeEEEecCCCeEEEE-e-CCCCeEEEEecCCCCCceEEEE
Q 029556 48 HSVIDRPGSSDLIVL-D-SSRSAFYTLSFPLSEESVVKRL 85 (191)
Q Consensus 48 ~gIav~d~~g~lyVa-D-~~n~~I~~~d~~~~~~g~v~~~ 85 (191)
..++++|++..|+++ + .++..|+.++. .++....+
T Consensus 246 ~~~~~SPDG~~La~~~~~~g~~~I~~~d~---~tg~~~~l 282 (429)
T PRK03629 246 GAPAFSPDGSKLAFALSKTGSLNLYVMDL---ASGQIRQV 282 (429)
T ss_pred CCeEECCCCCEEEEEEcCCCCcEEEEEEC---CCCCEEEc
Confidence 346787666677765 3 34457888885 34554443
No 136
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=24.36 E-value=1.5e+02 Score=16.84 Aligned_cols=27 Identities=15% Similarity=0.085 Sum_probs=17.8
Q ss_pred CeEEEEeCCCCeEEEEecCCCCCceEEEEec
Q 029556 57 SDLIVLDSSRSAFYTLSFPLSEESVVKRLAG 87 (191)
Q Consensus 57 g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG 87 (191)
|.+|+. +.++.++-+|. .+|++.+-..
T Consensus 1 ~~v~~~-~~~g~l~AlD~---~TG~~~W~~~ 27 (38)
T PF01011_consen 1 GRVYVG-TPDGYLYALDA---KTGKVLWKFQ 27 (38)
T ss_dssp TEEEEE-TTTSEEEEEET---TTTSEEEEEE
T ss_pred CEEEEe-CCCCEEEEEEC---CCCCEEEeee
Confidence 356666 77778888875 4677666543
No 137
>PRK12818 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=23.20 E-value=4.5e+02 Score=21.99 Aligned_cols=72 Identities=18% Similarity=0.223 Sum_probs=36.2
Q ss_pred CCCeeeEEEecCCCeEEEEeCCCCeEEEEec----CCCCCceEEEEecCCCccCC--CCCCcccccCCCceEEEcCCCCE
Q 029556 44 EINPHSVIDRPGSSDLIVLDSSRSAFYTLSF----PLSEESVVKRLAGDGVQGYS--DGEPGSARFDKPKSFAVDMKGNI 117 (191)
Q Consensus 44 ~~~P~gIav~d~~g~lyVaD~~n~~I~~~d~----~~~~~g~v~~~aG~~~~G~~--DG~~~~a~f~~P~gIavD~~G~i 117 (191)
..+|.++|+. .+|.+-|.+.. +.++ +.. .++++|.+..-.|....|.. .|...+-++. +..+.++++|.|
T Consensus 89 Tg~~lDlAI~-G~GFF~V~~~~-G~~~-YTR~G~F~~d~~G~Lvt~~G~~vlg~~~~~~~~~pI~lp-~~~i~i~~dG~i 164 (256)
T PRK12818 89 TDKPTDFAIQ-GRGFFTVERNA-GNNY-YTRDGHFHVDTQGYLVNDSGYYVLGRNNATGAREPINVG-NGKFSTDADGNI 164 (256)
T ss_pred cCCcceEEEC-CCceEEEEcCC-CCeE-EeeCCCeeECCCCCEEcCCCCEEeccccccCCcCCeEEC-CCCceECCCCeE
Confidence 3799999994 66666565543 3211 211 11244554433332222221 0101123333 357999999999
Q ss_pred EE
Q 029556 118 YV 119 (191)
Q Consensus 118 yV 119 (191)
+.
T Consensus 165 ~~ 166 (256)
T PRK12818 165 SL 166 (256)
T ss_pred EE
Confidence 76
No 138
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=22.57 E-value=5.1e+02 Score=22.47 Aligned_cols=29 Identities=0% Similarity=0.071 Sum_probs=23.8
Q ss_pred CCCceEEEcCCCCEEEEeCCCCEEEEEeC
Q 029556 104 DKPKSFAVDMKGNIYVADKSNHVIRKITN 132 (191)
Q Consensus 104 ~~P~gIavD~~G~iyVaD~~n~rIr~i~~ 132 (191)
..-+.++...++++|+.-.++++|..+.-
T Consensus 148 ~e~ne~~w~~~nd~Fflt~GlG~v~ILsy 176 (313)
T KOG1407|consen 148 FEVNEISWNNSNDLFFLTNGLGCVEILSY 176 (313)
T ss_pred ceeeeeeecCCCCEEEEecCCceEEEEec
Confidence 34567788877899999999999998875
No 139
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=22.05 E-value=5.3e+02 Score=22.41 Aligned_cols=59 Identities=19% Similarity=0.318 Sum_probs=34.4
Q ss_pred CCeEEEEeCCCCeEEEEecCCCCCceEEEEecCCCccCCCCCCcccccCCCceEEEcCCCCEEEEeCCCCEEEEEeCCCC
Q 029556 56 SSDLIVLDSSRSAFYTLSFPLSEESVVKRLAGDGVQGYSDGEPGSARFDKPKSFAVDMKGNIYVADKSNHVIRKITNLDH 135 (191)
Q Consensus 56 ~g~lyVaD~~n~~I~~~d~~~~~~g~v~~~aG~~~~G~~DG~~~~a~f~~P~gIavD~~G~iyVaD~~n~rIr~i~~~~~ 135 (191)
++.+|+++. ++.++.+|. .+|+..+-.. +..+..++++ +|.+|+.+. ++++..++++++
T Consensus 256 ~~~vy~~~~-~g~l~ald~---~tG~~~W~~~---------------~~~~~~~~~~-~~~vy~~~~-~g~l~ald~~tG 314 (394)
T PRK11138 256 GGVVYALAY-NGNLVALDL---RSGQIVWKRE---------------YGSVNDFAVD-GGRIYLVDQ-NDRVYALDTRGG 314 (394)
T ss_pred CCEEEEEEc-CCeEEEEEC---CCCCEEEeec---------------CCCccCcEEE-CCEEEEEcC-CCeEEEEECCCC
Confidence 567777764 457777775 4565544321 1122233444 467888764 567888887554
No 140
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ]. These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats [].
Probab=21.47 E-value=4.3e+02 Score=21.13 Aligned_cols=33 Identities=15% Similarity=0.267 Sum_probs=16.8
Q ss_pred eeeccCccE--EecCCcEEEEEEcC-ccCCCCeeeE
Q 029556 18 LFSLVSSGL--LLEDGYTVTTVIDG-HQLEINPHSV 50 (191)
Q Consensus 18 ~~~~~~g~l--~~~dGy~~~~~~~G-~~~~~~P~gI 50 (191)
++.+++|.+ .+|||...-..++. ..+...|.|+
T Consensus 31 ~v~f~NGDvK~~~pDg~v~Y~ya~~~T~~tt~pdG~ 66 (179)
T PF07202_consen 31 IVRFPNGDVKQTLPDGRVIYYYADAQTTHTTYPDGL 66 (179)
T ss_pred EEEEeCCCEeEEecCCcEEEEEeCCCEEEEEcCCCc
Confidence 446677777 46777544444432 2223345444
No 141
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=21.43 E-value=3e+02 Score=26.11 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=27.4
Q ss_pred CCeeeEEEecCCCeEEEEeCCCCeEEEEecCCC
Q 029556 45 INPHSVIDRPGSSDLIVLDSSRSAFYTLSFPLS 77 (191)
Q Consensus 45 ~~P~gIav~d~~g~lyVaD~~n~~I~~~d~~~~ 77 (191)
..|.-+++ .++|.+++.-...+.++.+|..++
T Consensus 300 ~~P~~iaW-Hp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 300 FIPTLIAW-HPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ccceEEEE-cCCCcEEEEEcCCceEEEEEeecC
Confidence 57999999 588889888888999999998653
Done!