BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029557
         (191 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2GHF|A Chain A, Solution Structure Of The Complete Zinc-Finger Region Of
           Human Zinc-Fingers And Homeoboxes 1 (Zhx1)
          Length = 102

 Score = 32.0 bits (71), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 16/96 (16%)

Query: 43  VKGEYEYPCPFCS-EDFDLVGLCCHIDEEHP--VEAKSGVCPVCVTRVTMDMVDHITTQH 99
           V+G YE  C +C+ +  DL     H+D EHP  V   S VC  C         + +T ++
Sbjct: 15  VEGGYE--CKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVEC---------NFLTKRY 63

Query: 100 GNISNSWHKLKLHKGNSNSTISSLRKELQNAHFQSL 135
             +S   H LK H G  N  ++ +++  Q    Q++
Sbjct: 64  DALSE--HNLKYHPGEENFKLTMVKRNNQTIFEQTI 97


>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide
          Reveals An Extension To The Rules For Zinc-FingerDNA
          RECOGNITION
 pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide
          Reveals An Extension To The Rules For Zinc-FingerDNA
          RECOGNITION
          Length = 66

 Score = 27.3 bits (59), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 3/58 (5%)

Query: 45 GEYEYPCPFCSEDFDLV-GLCCHIDEEHPVEAKSGVCPVCVTRVTM--DMVDHITTQH 99
          GE+ Y C  CS  +  +   C H    H    K   CP C    T   +M  H+   H
Sbjct: 7  GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.129    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,708,995
Number of Sequences: 62578
Number of extensions: 147164
Number of successful extensions: 228
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 225
Number of HSP's gapped (non-prelim): 8
length of query: 191
length of database: 14,973,337
effective HSP length: 93
effective length of query: 98
effective length of database: 9,153,583
effective search space: 897051134
effective search space used: 897051134
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)