BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029558
(191 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LKU|A Chain A, Solution Structure Of Reduced Poplar Apo Grxs14
Length = 109
Score = 176 bits (445), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 82/90 (91%), Positives = 87/90 (96%)
Query: 72 ALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEML 131
ALTP LK+TLDKVVT +KVVLFMKGTKDFPQCGFS TVVQILKSLNAPFE+VNILENE+L
Sbjct: 2 ALTPALKTTLDKVVTSHKVVLFMKGTKDFPQCGFSQTVVQILKSLNAPFESVNILENELL 61
Query: 132 RQGLKEYSSWPTFPQLYIEGEFFGGCDITV 161
RQGLKEYSSWPTFPQLYI+GEFFGGCDITV
Sbjct: 62 RQGLKEYSSWPTFPQLYIDGEFFGGCDITV 91
>pdb|3IPZ|A Chain A, Crystal Structure Of Arabidopsis Monothiol Glutaredoxin
Atgr
Length = 109
Score = 161 bits (407), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 74/91 (81%), Positives = 83/91 (91%)
Query: 71 AALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEM 130
+ALTP+LK TL+K+V KVVLFMKGT+DFP CGFS+TVVQILK+LN PFE VNILENEM
Sbjct: 1 SALTPQLKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEM 60
Query: 131 LRQGLKEYSSWPTFPQLYIEGEFFGGCDITV 161
LRQGLKEYS+WPTFPQLYI GEFFGGCDIT+
Sbjct: 61 LRQGLKEYSNWPTFPQLYIGGEFFGGCDITL 91
>pdb|2WUL|A Chain A, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|B Chain B, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|C Chain C, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|D Chain D, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
Length = 118
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 69/105 (65%), Gaps = 6/105 (5%)
Query: 79 STLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNA-PFETVNILENEMLRQGLKE 137
LD +V +KVV+F+KGT + PQCGFS+ VVQIL+ + N+L++ LRQG+K+
Sbjct: 11 EQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKD 70
Query: 138 YSSWPTFPQLYIEGEFFGGCDITV-----GKLMDFLNLLNFSSTI 177
YS+WPT PQ+Y+ GEF GGCDI + G L++ L L S +
Sbjct: 71 YSNWPTIPQVYLNGEFVGGCDILLQMHQNGDLVEELKKLGIHSAL 115
>pdb|2YAN|A Chain A, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
pdb|2YAN|B Chain B, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
Length = 105
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 61/88 (69%)
Query: 72 ALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEML 131
++ P+L+ L + V+LFMKG K +CGFS +++IL S +ET +ILE+E +
Sbjct: 1 SMAPKLEERLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEV 60
Query: 132 RQGLKEYSSWPTFPQLYIEGEFFGGCDI 159
RQGLK YS+WPT+PQLY++GE GG DI
Sbjct: 61 RQGLKAYSNWPTYPQLYVKGELVGGLDI 88
>pdb|3GX8|A Chain A, Structural And Biochemical Characterization Of Yeast
Monothiol Glutaredoxin Grx5
Length = 121
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 64/105 (60%), Gaps = 8/105 (7%)
Query: 73 LTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLN---APFETVNILENE 129
L+ E++ ++ + VVLFMKGT +FP+CGFS + +L + A F N+LE+
Sbjct: 1 LSTEIRKAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDP 60
Query: 130 MLRQGLKEYSSWPTFPQLYIEGEFFGGCDITV-----GKLMDFLN 169
LR+G+KE+S WPT PQLY+ EF GGCD+ G+L D L
Sbjct: 61 ELREGIKEFSEWPTIPQLYVNKEFIGGCDVITSMARSGELADLLE 105
>pdb|1WIK|A Chain A, Solution Structure Of The Picot Homology 2 Domain Of The
Mouse Pkc-Interacting Cousin Of Thioredoxin Protein
Length = 109
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 64/91 (70%), Gaps = 4/91 (4%)
Query: 83 KVVTGNK--VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSS 140
KV+T NK V+LFMKG K +CGFS +++IL S +ET +ILE+E +RQGLK +S+
Sbjct: 9 KVLT-NKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSN 67
Query: 141 WPTFPQLYIEGEFFGGCDITVGKLMDFLNLL 171
WPT+PQLY+ G+ GG DI V +L D LL
Sbjct: 68 WPTYPQLYVRGDLVGGLDI-VKELKDNGELL 97
>pdb|3ZYW|A Chain A, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
pdb|3ZYW|B Chain B, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
Length = 111
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 55/87 (63%)
Query: 73 LTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLR 132
+ +L L K+ +LFMKGT P+CGFS +V+IL N F + +I +E +R
Sbjct: 1 MKEDLNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVR 60
Query: 133 QGLKEYSSWPTFPQLYIEGEFFGGCDI 159
QGLK YSSWPT+PQLY+ GE GG DI
Sbjct: 61 QGLKAYSSWPTYPQLYVSGELIGGLDI 87
>pdb|2WCI|A Chain A, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
pdb|2WCI|B Chain B, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
Length = 135
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 58/88 (65%), Gaps = 3/88 (3%)
Query: 77 LKSTLDKV---VTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQ 133
+ +T++K+ + N ++L+MKG+ P CGFS VQ L + F V+IL+N +R
Sbjct: 21 MSTTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRA 80
Query: 134 GLKEYSSWPTFPQLYIEGEFFGGCDITV 161
L +Y++WPTFPQL+++GE GGCDI +
Sbjct: 81 ELPKYANWPTFPQLWVDGELVGGCDIVI 108
>pdb|1YKA|A Chain A, Solution Structure Of Grx4, A Monothiol Glutaredoxin From
E. Coli
Length = 115
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 58/88 (65%), Gaps = 3/88 (3%)
Query: 77 LKSTLDKV---VTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQ 133
+ +T++K+ + N ++L+MKG+ P CGFS VQ L + F V+IL+N +R
Sbjct: 1 MSTTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRA 60
Query: 134 GLKEYSSWPTFPQLYIEGEFFGGCDITV 161
L +Y++WPTFPQL+++GE GGCDI +
Sbjct: 61 ELPKYANWPTFPQLWVDGELVGGCDIVI 88
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 116
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 103 CGFSHTVVQILKSLNAPFETVNILE---NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDI 159
CG+ + V Q+L + A ++ V + E L+ L ++ T P ++I G+ GGCD
Sbjct: 30 CGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTGRGTVPNVFIGGKQIGGCDT 89
Query: 160 TVGK 163
V K
Sbjct: 90 VVEK 93
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
Length = 117
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 103 CGFSHTVVQILKSLNAPFETVNILE---NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDI 159
CG+ + V Q+L + A ++ V + E L+ L ++ T P ++I G+ GGCD
Sbjct: 31 CGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTGRGTVPNVFIGGKQIGGCDT 90
Query: 160 TVGK 163
V K
Sbjct: 91 VVEK 94
>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella
Melitensis
Length = 92
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 101 PQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCD 158
P C + +L A F ++ LR ++E S TFPQ++I GGCD
Sbjct: 14 PGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQIFIGSVHVGGCD 71
>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin
3-Glutathione Mixed Disulfide Complex, 20 Structures
Length = 82
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 103 CGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCD 158
C +SH +L S F+ + I N R+ + + S T PQ++I+ + GG D
Sbjct: 11 CPYSHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHIGGYD 66
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 53/110 (48%), Gaps = 12/110 (10%)
Query: 50 TNNLRLLGVKSNKATTFRCLAAALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTV 109
T NL ++SN +++ LA A +++ T ++ N VV+F K + C +
Sbjct: 15 TENLYFQSMESNTSSSLENLATAPVNQIQET----ISDNCVVIFSKTS-----CSYCTMA 65
Query: 110 VQILKSLNAPFETV--NILE-NEMLRQGLKEYSSWPTFPQLYIEGEFFGG 156
++ +N ++ V ++LE + L + + T P++++ G F GG
Sbjct: 66 KKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFIGG 115
>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione
pdb|3FZA|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione And Beta-Mercaptoethanol
Length = 112
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
Query: 71 AALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEM 130
A+ L+ + K V N VV++ K C +S V + K LN V + +E+
Sbjct: 1 ASFGSRLEDAVKKTVAENPVVVYSK-----TWCSYSSEVKSLFKRLNVDPLVVEL--DEL 53
Query: 131 LRQG------LKEYSSWPTFPQLYIEGEFFGGCDITV 161
QG L+ + T P ++I G+ GGC TV
Sbjct: 54 GAQGPQIQKVLERLTGQHTVPNVFIGGKHIGGCTDTV 90
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully Oxidized
Form
Length = 82
Score = 34.3 bits (77), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 103 CGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCD 158
C + H +L S F+ + I N R+ + + S T PQ++I+ + GG D
Sbjct: 11 CPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHIGGYD 66
>pdb|2JAC|A Chain A, Glutaredoxin Grx1p C30s Mutant From Yeast
Length = 110
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 103 CGFSHTVVQIL-KSLNAPFETVNILENEMLRQG------LKEYSSWPTFPQLYIEGEFFG 155
C +SH + L + L P V +L+ +++G L E + T P +YI G+ G
Sbjct: 27 CPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIG 86
Query: 156 GCD 158
G D
Sbjct: 87 GND 89
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Nadph
Length = 598
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 81 LDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSS 140
L K V V+LF K T P C V+ K +A E + +++ L +S
Sbjct: 11 LRKTVDSAAVILFSKTT--CPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSK 68
Query: 141 WPTFPQLYIEGEFFG 155
T PQ+++ G+F G
Sbjct: 69 IETVPQMFVRGKFIG 83
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 81 LDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSS 140
L K V V+LF K T P C V+ K +A E + +++ L +S
Sbjct: 11 LRKTVDSAAVILFSKTT--CPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSK 68
Query: 141 WPTFPQLYIEGEFFG 155
T PQ+++ G+F G
Sbjct: 69 IETVPQMFVRGKFIG 83
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione
Reductase From Schistosoma Mansoni In Complex With
Auranofin
Length = 598
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 81 LDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSS 140
L K V V+LF K T P C V+ K +A E + +++ L +S
Sbjct: 11 LRKTVDSAAVILFSKTT--CPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSK 68
Query: 141 WPTFPQLYIEGEFFG 155
T PQ+++ G+F G
Sbjct: 69 IETVPQMFVRGKFIG 83
>pdb|3D5J|A Chain A, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
pdb|3D5J|B Chain B, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
Length = 112
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 12/78 (15%)
Query: 103 CGFSH-TVVQILKSLNAPFETVNILE-NEM-----LRQGLKEYSSWPTFPQLYIEGEFFG 155
C +S T+ + + LN P +LE +EM ++ L+E S T P +YI G+ G
Sbjct: 30 CPYSKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIG 89
Query: 156 G-CDITV----GKLMDFL 168
G D+ GKL + L
Sbjct: 90 GNSDLETLKKNGKLAEIL 107
>pdb|3H8Q|A Chain A, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
pdb|3H8Q|B Chain B, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
Length = 114
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 14/92 (15%)
Query: 75 PELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQG 134
EL+ L ++ ++VV+F K C S V ++ SL N+LE + + G
Sbjct: 4 EELRRHLVGLIERSRVVIFSKSY-----CPHSTRVKELFSSLGVE---CNVLELDQVDDG 55
Query: 135 ------LKEYSSWPTFPQLYIEGEFFGGCDIT 160
L E ++ T P +++ GGCD T
Sbjct: 56 ARVQEVLSEITNQKTVPNIFVNKVHVGGCDQT 87
>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2
pdb|3CTG|A Chain A, Crystal Structure Of Reduced Glutaredoxin 2
Length = 129
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Query: 108 TVVQILKSLNAPFETVNILE-NEM-----LRQGLKEYSSWPTFPQLYIEGEFFGG-CDIT 160
T+ + + LN P +LE +EM ++ L+E S T P +YI G+ GG D+
Sbjct: 53 TLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIGGNSDLE 112
Query: 161 V----GKLMDFL 168
GKL + L
Sbjct: 113 TLKKNGKLAEIL 124
>pdb|2JAD|A Chain A, Yellow Fluorescent Protein - Glutaredoxin Fusion Protein
Length = 362
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 103 CGFSHTVVQIL-KSLNAPFETVNILENEMLRQG------LKEYSSWPTFPQLYIEGEFFG 155
C +SH + L + L P V +L+ +++G L E + T P +YI G+ G
Sbjct: 271 CPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIG 330
Query: 156 GCD 158
G D
Sbjct: 331 GND 333
>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure
Length = 109
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Query: 108 TVVQILKSLNAPFETVNILE-NEM-----LRQGLKEYSSWPTFPQLYIEGEFFGG-CDIT 160
T+ + + LN P +LE +EM ++ L+E S T P +YI G+ GG D+
Sbjct: 33 TLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIGGNSDLE 92
Query: 161 V----GKLMDFL 168
GKL + L
Sbjct: 93 TLKKNGKLAEIL 104
>pdb|1NM3|A Chain A, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
pdb|1NM3|B Chain B, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
Length = 241
Score = 30.0 bits (66), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 101 PQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCD 158
P C F Q+L FE + IL ++ ++ S T PQ++I G+ GG D
Sbjct: 178 PGCPFCAKAKQLLHDKGLSFEEI-ILGHDATIVSVRAVSGRTTVPQVFIGGKHIGGSD 234
>pdb|3C1R|A Chain A, Crystal Structure Of Oxidized Grx1
pdb|3C1S|A Chain A, Crystal Structure Of Grx1 In Glutathionylated Form
Length = 118
Score = 30.0 bits (66), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 103 CGFSHTVVQIL-KSLNAPFETVNILENEMLRQG------LKEYSSWPTFPQLYIEGEFFG 155
C + H + L + L P V +L+ +++G L E + T P +YI G+ G
Sbjct: 35 CPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIG 94
Query: 156 GCD 158
G D
Sbjct: 95 GND 97
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
Length = 113
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 71 AALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--- 127
A+ ++ ++ K VT N VV++ K C + V + K L V + +
Sbjct: 2 ASFGSRMEESIRKTVTENTVVIYSK-----TWCSYCTEVKTLFKRLGVQPLVVELDQLGP 56
Query: 128 -NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITV 161
L++ L+ + T P +++ G+ GGC TV
Sbjct: 57 QGPQLQKVLERLTGQHTVPNVFVCGKHIGGCTDTV 91
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/81 (20%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 79 STLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETV--NILE-NEMLRQGL 135
+ + + ++ N VV+F K + C + ++ +N ++ V ++LE + L
Sbjct: 18 NQIQETISDNCVVIFSKTS-----CSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDAL 72
Query: 136 KEYSSWPTFPQLYIEGEFFGG 156
+ + T P++++ G F GG
Sbjct: 73 YKMTGERTVPRIFVNGTFIGG 93
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/81 (20%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 79 STLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETV--NILE-NEMLRQGL 135
+ + + ++ N VV+F K + C + ++ +N ++ V ++LE + L
Sbjct: 26 NQIQETISDNCVVIFSKTS-----CSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDAL 80
Query: 136 KEYSSWPTFPQLYIEGEFFGG 156
+ + T P++++ G F GG
Sbjct: 81 YKMTGERTVPRIFVNGTFIGG 101
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 15/78 (19%)
Query: 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPF-----ETVNIL---ENEMLRQGLKEYS 139
KVV+F+K P C F ++L L PF E V+I + ++ L++ +
Sbjct: 12 GKVVVFIK-----PTCPFCRKTQELLSQL--PFKEGLLEFVDITATSDTNEIQDYLQQLT 64
Query: 140 SWPTFPQLYIEGEFFGGC 157
T P+++I E GGC
Sbjct: 65 GARTVPRVFIGKECIGGC 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,491,885
Number of Sequences: 62578
Number of extensions: 214710
Number of successful extensions: 513
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 491
Number of HSP's gapped (non-prelim): 32
length of query: 191
length of database: 14,973,337
effective HSP length: 93
effective length of query: 98
effective length of database: 9,153,583
effective search space: 897051134
effective search space used: 897051134
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)