Query 029558
Match_columns 191
No_of_seqs 169 out of 1274
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 14:50:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029558.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029558hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10824 glutaredoxin-4; Provi 99.9 4.5E-27 9.8E-32 181.0 11.8 98 76-173 3-105 (115)
2 COG0278 Glutaredoxin-related p 99.9 1.7E-26 3.7E-31 172.9 10.4 90 76-165 3-93 (105)
3 TIGR00365 monothiol glutaredox 99.9 5.5E-25 1.2E-29 163.9 11.7 88 78-165 2-89 (97)
4 cd03028 GRX_PICOT_like Glutare 99.9 9.8E-24 2.1E-28 154.5 10.1 85 81-165 1-85 (90)
5 TIGR02189 GlrX-like_plant Glut 99.9 2.8E-23 6E-28 155.3 8.7 93 82-179 2-99 (99)
6 PTZ00062 glutaredoxin; Provisi 99.9 7.8E-23 1.7E-27 171.3 11.6 92 74-165 99-190 (204)
7 PHA03050 glutaredoxin; Provisi 99.9 4.4E-22 9.6E-27 151.3 12.2 92 78-174 3-105 (108)
8 KOG0911 Glutaredoxin-related p 99.9 2.4E-22 5.2E-27 169.3 10.3 89 77-165 128-216 (227)
9 KOG1752 Glutaredoxin and relat 99.8 2E-20 4.4E-25 141.8 10.2 96 78-178 4-104 (104)
10 cd03027 GRX_DEP Glutaredoxin ( 99.8 3.7E-19 8.1E-24 124.6 8.6 71 89-164 2-72 (73)
11 PRK10638 glutaredoxin 3; Provi 99.8 1.1E-18 2.3E-23 125.3 10.2 73 88-165 2-74 (83)
12 cd03418 GRX_GRXb_1_3_like Glut 99.8 1E-18 2.2E-23 121.7 9.4 72 89-165 1-73 (75)
13 TIGR02190 GlrX-dom Glutaredoxi 99.8 1.1E-18 2.3E-23 124.6 9.1 75 84-164 4-78 (79)
14 TIGR02181 GRX_bact Glutaredoxi 99.8 1.7E-18 3.7E-23 122.4 8.8 71 90-165 1-71 (79)
15 cd03031 GRX_GRX_like Glutaredo 99.8 3.8E-18 8.3E-23 136.4 10.8 94 89-184 1-104 (147)
16 cd03029 GRX_hybridPRX5 Glutare 99.8 4.4E-18 9.5E-23 118.7 9.1 70 89-164 2-71 (72)
17 COG0695 GrxC Glutaredoxin and 99.8 4.9E-18 1.1E-22 122.5 9.2 72 89-165 2-75 (80)
18 PRK11200 grxA glutaredoxin 1; 99.7 8E-18 1.7E-22 121.2 9.6 76 88-168 1-83 (85)
19 TIGR02183 GRXA Glutaredoxin, G 99.7 3.6E-17 7.8E-22 118.8 9.1 72 90-166 2-80 (86)
20 cd02066 GRX_family Glutaredoxi 99.7 1E-16 2.2E-21 108.3 9.4 71 89-164 1-71 (72)
21 cd03419 GRX_GRXh_1_2_like Glut 99.7 1.5E-16 3.3E-21 112.1 9.0 72 89-165 1-75 (82)
22 TIGR02180 GRX_euk Glutaredoxin 99.7 1.9E-16 4.1E-21 111.7 8.8 71 90-165 1-76 (84)
23 PF00462 Glutaredoxin: Glutare 99.7 2E-16 4.4E-21 106.7 7.1 60 90-154 1-60 (60)
24 TIGR02194 GlrX_NrdH Glutaredox 99.6 2.1E-15 4.6E-20 105.5 8.3 68 90-165 1-69 (72)
25 PRK10329 glutaredoxin-like pro 99.6 5.6E-15 1.2E-19 106.7 10.1 72 89-168 2-73 (81)
26 cd03030 GRX_SH3BGR Glutaredoxi 99.6 9.3E-15 2E-19 108.4 8.7 76 90-165 2-82 (92)
27 PRK12759 bifunctional gluaredo 99.6 1.3E-14 2.8E-19 132.5 9.5 71 88-163 2-80 (410)
28 TIGR02196 GlrX_YruB Glutaredox 99.5 3.5E-13 7.6E-18 91.4 9.2 73 89-168 1-73 (74)
29 cd02976 NrdH NrdH-redoxin (Nrd 99.4 1.8E-12 4E-17 87.8 9.4 71 89-166 1-71 (73)
30 TIGR02200 GlrX_actino Glutared 99.3 2.9E-11 6.3E-16 83.5 9.1 66 89-159 1-68 (77)
31 KOG2824 Glutaredoxin-related p 99.2 4.9E-11 1.1E-15 103.6 8.4 87 86-172 129-225 (281)
32 cd02973 TRX_GRX_like Thioredox 99.0 5.8E-10 1.3E-14 75.9 6.5 58 89-155 2-64 (67)
33 cd03041 GST_N_2GST_N GST_N fam 99.0 5.1E-09 1.1E-13 73.8 9.2 72 90-166 2-75 (77)
34 cd03040 GST_N_mPGES2 GST_N fam 98.9 8.7E-09 1.9E-13 71.9 9.1 72 89-168 1-76 (77)
35 cd00570 GST_N_family Glutathio 98.9 8.2E-09 1.8E-13 68.0 6.8 69 91-164 2-70 (71)
36 PF04908 SH3BGR: SH3-binding, 98.8 1.9E-08 4.1E-13 75.8 8.0 77 89-165 2-88 (99)
37 cd03037 GST_N_GRX2 GST_N famil 98.7 6E-08 1.3E-12 66.7 7.2 68 91-165 2-70 (71)
38 cd03026 AhpF_NTD_C TRX-GRX-lik 98.6 1.9E-07 4.2E-12 68.3 7.2 70 77-155 3-77 (89)
39 cd03059 GST_N_SspA GST_N famil 98.6 4.1E-07 9E-12 62.3 7.6 70 91-166 2-71 (73)
40 PF05768 DUF836: Glutaredoxin- 98.5 6.9E-07 1.5E-11 64.0 8.9 53 89-151 1-57 (81)
41 KOG3029 Glutathione S-transfer 98.5 2.5E-07 5.4E-12 81.4 7.4 73 89-169 90-162 (370)
42 TIGR00411 redox_disulf_1 small 98.5 8.1E-07 1.7E-11 61.9 8.7 60 89-157 2-68 (82)
43 cd03036 ArsC_like Arsenate Red 98.5 9E-08 2E-12 72.6 3.8 45 90-139 1-45 (111)
44 PF13417 GST_N_3: Glutathione 98.5 4.9E-07 1.1E-11 63.2 6.8 67 101-168 5-71 (75)
45 cd03045 GST_N_Delta_Epsilon GS 98.5 5.5E-07 1.2E-11 61.9 6.7 69 91-164 2-72 (74)
46 PRK01655 spxA transcriptional 98.5 2.7E-07 5.9E-12 72.2 5.7 45 90-139 2-46 (131)
47 cd03060 GST_N_Omega_like GST_N 98.5 8.2E-07 1.8E-11 61.2 7.2 67 91-163 2-69 (71)
48 cd03055 GST_N_Omega GST_N fami 98.5 7.8E-07 1.7E-11 64.4 7.4 72 87-164 16-88 (89)
49 PHA02125 thioredoxin-like prot 98.5 7.2E-07 1.6E-11 62.7 6.9 55 90-154 2-56 (75)
50 cd03051 GST_N_GTT2_like GST_N 98.4 6.1E-07 1.3E-11 61.1 5.9 69 91-164 2-73 (74)
51 cd02975 PfPDO_like_N Pyrococcu 98.4 2.1E-06 4.4E-11 65.0 9.4 60 82-149 17-81 (113)
52 cd02977 ArsC_family Arsenate R 98.4 1.9E-07 4.1E-12 69.6 3.6 47 90-141 1-47 (105)
53 cd03056 GST_N_4 GST_N family, 98.4 1.2E-06 2.7E-11 59.6 7.3 69 91-164 2-72 (73)
54 TIGR00412 redox_disulf_2 small 98.4 1.9E-06 4E-11 60.9 8.1 68 89-167 2-74 (76)
55 TIGR01295 PedC_BrcD bacterioci 98.3 1.1E-05 2.3E-10 62.2 9.9 86 79-168 14-120 (122)
56 PRK12559 transcriptional regul 98.2 1.8E-06 3.8E-11 67.7 4.9 45 90-139 2-46 (131)
57 TIGR01617 arsC_related transcr 98.2 2.6E-06 5.6E-11 65.0 5.5 44 90-138 1-44 (117)
58 cd03032 ArsC_Spx Arsenate Redu 98.2 3.2E-06 6.9E-11 64.3 5.6 43 90-137 2-44 (115)
59 PRK13344 spxA transcriptional 98.2 1.9E-06 4.2E-11 67.6 4.0 44 90-138 2-45 (132)
60 cd03054 GST_N_Metaxin GST_N fa 98.2 8.8E-06 1.9E-10 56.1 6.8 57 101-165 14-70 (72)
61 PRK15317 alkyl hydroperoxide r 98.1 1.2E-05 2.5E-10 75.2 9.1 76 71-155 101-181 (517)
62 TIGR03140 AhpF alkyl hydropero 98.1 6.2E-06 1.3E-10 77.1 6.2 77 71-156 102-183 (515)
63 cd03061 GST_N_CLIC GST_N famil 98.1 3.4E-05 7.5E-10 57.1 8.7 79 89-168 5-86 (91)
64 cd03058 GST_N_Tau GST_N family 98.1 2.7E-05 5.8E-10 53.8 7.7 70 91-166 2-72 (74)
65 PF13192 Thioredoxin_3: Thiore 98.0 2.6E-05 5.6E-10 55.0 7.6 63 101-168 8-75 (76)
66 cd03053 GST_N_Phi GST_N family 98.0 3.4E-05 7.4E-10 53.2 7.8 71 90-165 2-74 (76)
67 TIGR03143 AhpF_homolog putativ 98.0 2.2E-05 4.8E-10 74.2 9.0 75 71-154 461-540 (555)
68 TIGR02187 GlrX_arch Glutaredox 98.0 3E-05 6.6E-10 64.6 8.7 78 72-158 119-204 (215)
69 cd03035 ArsC_Yffb Arsenate Red 98.0 6.8E-06 1.5E-10 62.0 4.0 43 90-137 1-43 (105)
70 cd02949 TRX_NTR TRX domain, no 98.0 0.0001 2.2E-09 53.6 9.6 60 88-155 14-81 (97)
71 cd03052 GST_N_GDAP1 GST_N fami 97.9 3.4E-05 7.3E-10 54.0 6.5 69 91-164 2-72 (73)
72 TIGR01616 nitro_assoc nitrogen 97.9 3.7E-05 7.9E-10 60.1 7.2 77 89-172 2-117 (126)
73 PHA02278 thioredoxin-like prot 97.9 8.8E-05 1.9E-09 55.7 8.8 66 86-155 13-86 (103)
74 cd03033 ArsC_15kD Arsenate Red 97.9 1.5E-05 3.2E-10 61.1 4.5 36 89-129 1-36 (113)
75 cd02985 TRX_CDSP32 TRX family, 97.9 0.00026 5.5E-09 52.3 10.6 63 87-154 15-84 (103)
76 cd03080 GST_N_Metaxin_like GST 97.9 0.00013 2.8E-09 50.8 8.3 57 102-166 16-72 (75)
77 KOG0910 Thioredoxin-like prote 97.9 8.5E-05 1.9E-09 59.9 8.2 70 90-170 65-146 (150)
78 cd03076 GST_N_Pi GST_N family, 97.9 0.00014 3.1E-09 50.4 8.3 70 90-165 2-71 (73)
79 cd02951 SoxW SoxW family; SoxW 97.8 6.5E-05 1.4E-09 56.8 7.1 67 79-149 4-90 (125)
80 cd02953 DsbDgamma DsbD gamma f 97.8 5.5E-05 1.2E-09 55.3 6.5 66 80-149 3-78 (104)
81 cd03039 GST_N_Sigma_like GST_N 97.8 0.00013 2.7E-09 50.1 7.9 69 91-164 2-70 (72)
82 cd03038 GST_N_etherase_LigE GS 97.8 8.1E-05 1.8E-09 52.8 6.7 65 101-166 14-81 (84)
83 COG1393 ArsC Arsenate reductas 97.8 3E-05 6.5E-10 59.9 4.5 45 89-138 2-46 (117)
84 cd03042 GST_N_Zeta GST_N famil 97.8 9.2E-05 2E-09 50.3 6.3 69 91-164 2-72 (73)
85 cd03048 GST_N_Ure2p_like GST_N 97.8 0.00016 3.4E-09 50.7 7.6 72 90-167 2-78 (81)
86 PF00085 Thioredoxin: Thioredo 97.8 0.00038 8.3E-09 49.6 9.6 60 87-154 17-84 (103)
87 cd02947 TRX_family TRX family; 97.7 0.00037 8E-09 47.6 9.1 59 88-154 11-76 (93)
88 COG4545 Glutaredoxin-related p 97.7 0.00011 2.4E-09 53.0 6.4 62 91-157 5-79 (85)
89 cd03049 GST_N_3 GST_N family, 97.7 9E-05 1.9E-09 50.9 5.9 68 91-164 2-72 (73)
90 PRK10387 glutaredoxin 2; Provi 97.7 0.00012 2.6E-09 59.5 7.6 70 91-167 2-72 (210)
91 PF14595 Thioredoxin_9: Thiore 97.7 2.4E-05 5.2E-10 61.2 3.3 93 72-170 27-127 (129)
92 TIGR02182 GRXB Glutaredoxin, G 97.7 0.00011 2.3E-09 60.9 7.2 65 101-167 6-71 (209)
93 cd02994 PDI_a_TMX PDIa family, 97.7 0.00032 7E-09 50.7 9.0 64 80-152 10-82 (101)
94 TIGR01068 thioredoxin thioredo 97.7 0.00042 9E-09 49.1 9.1 58 89-154 16-81 (101)
95 cd02963 TRX_DnaJ TRX domain, D 97.7 0.00048 1E-08 51.6 9.6 76 86-170 23-110 (111)
96 cd02954 DIM1 Dim1 family; Dim1 97.7 0.00026 5.6E-09 54.5 8.0 60 88-155 15-82 (114)
97 PF13409 GST_N_2: Glutathione 97.6 8.6E-05 1.9E-09 51.3 4.6 65 102-166 1-69 (70)
98 cd02989 Phd_like_TxnDC9 Phosdu 97.6 0.00046 1E-08 52.2 9.0 61 87-155 22-89 (113)
99 cd03050 GST_N_Theta GST_N fami 97.6 0.00043 9.3E-09 47.9 7.5 70 91-165 2-73 (76)
100 cd01659 TRX_superfamily Thiore 97.6 0.00024 5.2E-09 44.1 5.3 55 91-151 2-61 (69)
101 COG3118 Thioredoxin domain-con 97.5 0.00031 6.8E-09 62.3 7.5 88 77-172 33-130 (304)
102 cd03000 PDI_a_TMX3 PDIa family 97.5 0.00064 1.4E-08 49.8 7.9 65 77-149 5-78 (104)
103 PTZ00051 thioredoxin; Provisio 97.5 0.00099 2.2E-08 47.7 8.7 68 80-155 10-85 (98)
104 cd02957 Phd_like Phosducin (Ph 97.5 0.00094 2E-08 50.0 8.6 61 88-157 25-92 (113)
105 PRK10026 arsenate reductase; P 97.5 0.00019 4.2E-09 57.2 4.8 37 88-129 2-38 (141)
106 cd02948 TRX_NDPK TRX domain, T 97.4 0.002 4.4E-08 47.3 9.9 79 81-170 10-101 (102)
107 PRK09481 sspA stringent starva 97.4 0.00062 1.3E-08 56.0 7.8 74 89-168 10-83 (211)
108 PRK10996 thioredoxin 2; Provis 97.4 0.0018 4E-08 50.6 9.8 67 80-154 44-119 (139)
109 cd02956 ybbN ybbN protein fami 97.4 0.0014 3E-08 46.8 8.4 59 88-154 13-79 (96)
110 PRK10853 putative reductase; P 97.4 0.00022 4.8E-09 54.9 4.3 34 90-128 2-35 (118)
111 TIGR02187 GlrX_arch Glutaredox 97.4 0.0015 3.3E-08 54.4 9.6 68 81-154 14-90 (215)
112 cd03044 GST_N_EF1Bgamma GST_N 97.4 0.00065 1.4E-08 47.1 6.0 65 101-165 7-73 (75)
113 cd02984 TRX_PICOT TRX domain, 97.4 0.003 6.5E-08 45.0 9.6 59 88-154 15-81 (97)
114 cd03047 GST_N_2 GST_N family, 97.3 0.0012 2.5E-08 45.4 7.2 68 91-163 2-71 (73)
115 PRK09381 trxA thioredoxin; Pro 97.3 0.0019 4.2E-08 47.4 8.7 61 87-155 21-89 (109)
116 TIGR00014 arsC arsenate reduct 97.3 0.00028 6.1E-09 53.8 4.1 35 90-129 1-35 (114)
117 cd03034 ArsC_ArsC Arsenate Red 97.3 0.0003 6.5E-09 53.4 4.1 34 90-128 1-34 (112)
118 cd02987 Phd_like_Phd Phosducin 97.3 0.0025 5.5E-08 52.0 9.7 58 89-155 85-149 (175)
119 cd03043 GST_N_1 GST_N family, 97.3 0.0015 3.2E-08 45.3 7.1 64 101-164 8-72 (73)
120 TIGR00862 O-ClC intracellular 97.3 0.0019 4.1E-08 55.4 9.1 78 90-168 3-83 (236)
121 cd02950 TxlA TRX-like protein 97.2 0.0037 7.9E-08 49.1 9.3 78 87-170 20-112 (142)
122 cd03046 GST_N_GTT1_like GST_N 97.2 0.0023 5.1E-08 43.7 7.0 63 104-166 9-73 (76)
123 cd03005 PDI_a_ERp46 PDIa famil 97.1 0.0026 5.6E-08 45.5 7.5 66 81-154 10-86 (102)
124 cd03057 GST_N_Beta GST_N famil 97.1 0.0023 4.9E-08 44.2 6.9 70 91-166 2-74 (77)
125 cd02986 DLP Dim1 family, Dim1- 97.1 0.0027 5.8E-08 49.0 7.8 72 76-154 4-81 (114)
126 cd02955 SSP411 TRX domain, SSP 97.1 0.002 4.4E-08 50.0 7.2 72 80-155 7-95 (124)
127 KOG0907 Thioredoxin [Posttrans 97.1 0.0058 1.2E-07 46.3 9.1 67 79-153 12-86 (106)
128 cd02962 TMX2 TMX2 family; comp 97.1 0.0047 1E-07 49.6 9.1 55 101-155 57-122 (152)
129 PF13098 Thioredoxin_2: Thiore 97.1 0.0035 7.6E-08 45.9 7.8 66 89-159 8-104 (112)
130 PRK15113 glutathione S-transfe 97.1 0.0038 8.2E-08 51.4 8.6 78 88-168 4-83 (214)
131 cd03004 PDI_a_ERdj5_C PDIa fam 97.0 0.0057 1.2E-07 44.4 8.5 47 101-151 29-83 (104)
132 KOG4023 Uncharacterized conser 97.0 0.0027 5.9E-08 48.0 6.8 81 88-171 2-99 (108)
133 cd03003 PDI_a_ERdj5_N PDIa fam 97.0 0.0036 7.8E-08 45.4 7.3 58 88-153 19-84 (101)
134 cd02996 PDI_a_ERp44 PDIa famil 97.0 0.0036 7.9E-08 46.0 7.3 64 81-152 11-89 (108)
135 PLN02378 glutathione S-transfe 97.0 0.0029 6.2E-08 52.4 7.2 67 101-168 18-84 (213)
136 TIGR01126 pdi_dom protein disu 96.9 0.0061 1.3E-07 43.3 7.7 51 90-149 17-75 (102)
137 PRK00293 dipZ thiol:disulfide 96.9 0.0063 1.4E-07 58.2 9.7 75 75-153 461-547 (571)
138 PLN02817 glutathione dehydroge 96.9 0.0033 7.2E-08 54.5 7.1 66 102-168 72-137 (265)
139 cd03006 PDI_a_EFP1_N PDIa fami 96.9 0.005 1.1E-07 46.9 7.3 49 101-152 39-95 (113)
140 cd02965 HyaE HyaE family; HyaE 96.9 0.0063 1.4E-07 46.7 7.7 63 87-157 27-99 (111)
141 cd02952 TRP14_like Human TRX-r 96.8 0.0053 1.1E-07 47.5 7.1 56 101-156 38-105 (119)
142 cd02961 PDI_a_family Protein D 96.8 0.0086 1.9E-07 41.7 7.5 61 80-149 7-77 (101)
143 cd03008 TryX_like_RdCVF Trypar 96.8 0.012 2.6E-07 47.0 9.1 27 85-115 23-49 (146)
144 cd02959 ERp19 Endoplasmic reti 96.8 0.0034 7.5E-08 47.8 5.7 73 77-155 8-91 (117)
145 PF03960 ArsC: ArsC family; I 96.8 0.0025 5.5E-08 47.8 4.9 35 101-135 4-38 (110)
146 KOG0406 Glutathione S-transfer 96.8 0.0057 1.2E-07 52.6 7.6 76 88-169 8-84 (231)
147 cd03065 PDI_b_Calsequestrin_N 96.8 0.0074 1.6E-07 46.7 7.5 69 79-155 17-101 (120)
148 cd03001 PDI_a_P5 PDIa family, 96.8 0.0089 1.9E-07 42.8 7.5 52 90-149 21-78 (103)
149 cd02993 PDI_a_APS_reductase PD 96.8 0.0081 1.8E-07 44.5 7.5 47 101-149 31-84 (109)
150 PLN00410 U5 snRNP protein, DIM 96.8 0.012 2.6E-07 47.0 8.7 55 90-152 27-89 (142)
151 PLN02473 glutathione S-transfe 96.6 0.0092 2E-07 48.7 7.7 74 90-168 3-78 (214)
152 TIGR02740 TraF-like TraF-like 96.6 0.016 3.5E-07 50.5 9.4 67 78-149 158-235 (271)
153 cd02999 PDI_a_ERp44_like PDIa 96.6 0.012 2.7E-07 43.2 7.4 55 87-149 18-78 (100)
154 PRK13728 conjugal transfer pro 96.6 0.013 2.8E-07 48.6 8.0 76 90-170 73-173 (181)
155 KOG1422 Intracellular Cl- chan 96.5 0.0092 2E-07 50.7 7.1 66 102-170 20-87 (221)
156 PTZ00443 Thioredoxin domain-co 96.5 0.03 6.4E-07 47.8 9.9 59 88-154 53-119 (224)
157 PTZ00062 glutaredoxin; Provisi 96.4 0.014 3E-07 49.2 7.7 63 79-155 7-76 (204)
158 PF13728 TraF: F plasmid trans 96.4 0.017 3.7E-07 48.7 8.1 82 63-149 97-189 (215)
159 COG3019 Predicted metal-bindin 96.4 0.02 4.3E-07 45.9 7.6 69 86-159 24-92 (149)
160 cd02988 Phd_like_VIAF Phosduci 96.3 0.035 7.6E-07 46.1 9.3 55 89-154 104-165 (192)
161 cd03002 PDI_a_MPD1_like PDI fa 96.3 0.017 3.6E-07 41.9 6.5 54 90-149 21-80 (109)
162 PRK10877 protein disulfide iso 96.3 0.03 6.5E-07 47.7 8.8 23 89-116 110-132 (232)
163 TIGR01262 maiA maleylacetoacet 96.2 0.013 2.8E-07 47.5 6.2 68 101-168 6-76 (210)
164 cd02992 PDI_a_QSOX PDIa family 96.2 0.028 6.1E-07 42.3 7.6 55 89-149 21-84 (114)
165 cd03077 GST_N_Alpha GST_N fami 96.2 0.05 1.1E-06 38.2 8.2 70 91-166 3-74 (79)
166 PRK15412 thiol:disulfide inter 96.1 0.08 1.7E-06 43.0 10.3 46 87-136 68-117 (185)
167 cd02997 PDI_a_PDIR PDIa family 96.1 0.0097 2.1E-07 42.6 4.3 50 101-154 27-88 (104)
168 cd02964 TryX_like_family Trypa 96.0 0.052 1.1E-06 41.3 8.1 64 87-154 17-113 (132)
169 cd03079 GST_N_Metaxin2 GST_N f 95.9 0.017 3.7E-07 41.2 4.9 57 102-165 16-72 (74)
170 cd02998 PDI_a_ERp38 PDIa famil 95.9 0.032 6.9E-07 39.7 6.2 45 101-149 28-81 (105)
171 TIGR02661 MauD methylamine deh 95.8 0.11 2.3E-06 42.5 9.8 81 87-171 74-178 (189)
172 COG0625 Gst Glutathione S-tran 95.8 0.028 6E-07 45.9 6.3 69 101-169 7-77 (211)
173 TIGR02738 TrbB type-F conjugat 95.8 0.071 1.5E-06 42.8 8.3 59 86-149 50-124 (153)
174 PF06110 DUF953: Eukaryotic pr 95.7 0.066 1.4E-06 41.5 7.6 85 75-159 6-107 (119)
175 TIGR00385 dsbE periplasmic pro 95.7 0.16 3.4E-06 40.7 10.2 38 86-127 62-102 (173)
176 KOG3425 Uncharacterized conser 95.7 0.044 9.6E-07 42.9 6.5 56 72-127 10-75 (128)
177 PF13899 Thioredoxin_7: Thiore 95.6 0.029 6.2E-07 39.5 5.1 34 76-113 5-39 (82)
178 PRK03147 thiol-disulfide oxido 95.6 0.11 2.4E-06 40.7 8.9 79 87-171 61-171 (173)
179 cd03009 TryX_like_TryX_NRX Try 95.5 0.076 1.6E-06 40.0 7.4 64 87-154 18-113 (131)
180 cd03078 GST_N_Metaxin1_like GS 95.5 0.051 1.1E-06 38.1 5.9 57 102-166 15-71 (73)
181 COG2999 GrxB Glutaredoxin 2 [P 95.5 0.019 4.2E-07 48.0 4.2 61 102-165 8-70 (215)
182 PRK10357 putative glutathione 95.5 0.046 9.9E-07 44.2 6.4 65 101-166 7-72 (202)
183 KOG4244 Failed axon connection 95.4 0.025 5.4E-07 49.7 4.7 79 83-169 39-119 (281)
184 PLN02395 glutathione S-transfe 95.3 0.084 1.8E-06 42.9 7.6 73 90-168 3-77 (215)
185 cd02995 PDI_a_PDI_a'_C PDIa fa 95.2 0.069 1.5E-06 38.0 5.9 44 101-149 28-79 (104)
186 PRK13972 GSH-dependent disulfi 95.1 0.11 2.4E-06 42.6 7.7 72 90-167 2-82 (215)
187 TIGR01130 ER_PDI_fam protein d 95.1 0.14 3E-06 46.1 8.7 66 80-153 10-87 (462)
188 TIGR02739 TraF type-F conjugat 95.0 0.086 1.9E-06 45.9 7.1 79 66-149 130-219 (256)
189 TIGR00424 APS_reduc 5'-adenyly 94.9 0.11 2.4E-06 48.9 7.9 59 87-151 371-438 (463)
190 PTZ00102 disulphide isomerase; 94.9 0.18 3.8E-06 46.1 9.1 48 101-152 59-117 (477)
191 KOG0908 Thioredoxin-like prote 94.7 0.1 2.3E-06 45.7 6.5 94 76-180 11-114 (288)
192 PLN02309 5'-adenylylsulfate re 94.6 0.13 2.9E-06 48.2 7.6 56 87-149 365-428 (457)
193 PRK11752 putative S-transferas 94.5 0.17 3.7E-06 43.5 7.5 77 85-167 40-128 (264)
194 PF07315 DUF1462: Protein of u 94.5 0.24 5.1E-06 36.9 7.1 69 91-163 1-88 (93)
195 cd02958 UAS UAS family; UAS is 94.4 0.22 4.9E-06 36.9 7.1 73 76-154 5-91 (114)
196 COG2143 Thioredoxin-related pr 94.3 0.14 3E-06 42.1 6.1 32 77-113 31-64 (182)
197 cd03020 DsbA_DsbC_DsbG DsbA fa 94.3 0.18 3.8E-06 41.2 6.8 31 88-123 79-111 (197)
198 KOG0868 Glutathione S-transfer 94.1 0.12 2.6E-06 43.4 5.4 73 88-166 4-80 (217)
199 PTZ00057 glutathione s-transfe 94.0 0.43 9.3E-06 39.0 8.7 76 89-169 4-84 (205)
200 PF06953 ArsD: Arsenical resis 93.9 0.31 6.8E-06 38.0 7.2 46 108-154 31-83 (123)
201 cd02982 PDI_b'_family Protein 93.7 0.19 4.1E-06 35.9 5.3 52 89-149 15-74 (103)
202 PRK13703 conjugal pilus assemb 93.6 0.25 5.3E-06 42.9 6.8 73 72-149 129-212 (248)
203 cd02967 mauD Methylamine utili 93.5 0.34 7.4E-06 35.2 6.6 57 87-148 21-83 (114)
204 PRK11657 dsbG disulfide isomer 93.4 0.18 3.8E-06 43.4 5.6 31 89-124 120-154 (251)
205 PF02798 GST_N: Glutathione S- 93.4 0.41 8.9E-06 33.2 6.6 60 105-164 11-74 (76)
206 PRK10542 glutathionine S-trans 93.4 0.24 5.3E-06 39.7 6.2 64 105-168 10-77 (201)
207 PF11009 DUF2847: Protein of u 93.4 0.83 1.8E-05 34.8 8.5 68 84-155 16-92 (105)
208 cd03010 TlpA_like_DsbE TlpA-li 93.4 0.61 1.3E-05 34.8 7.9 27 101-127 35-65 (127)
209 cd02972 DsbA_family DsbA famil 93.3 0.21 4.5E-06 34.3 4.9 16 101-116 7-22 (98)
210 PF03190 Thioredox_DsbH: Prote 93.3 0.69 1.5E-05 37.8 8.5 74 79-155 28-117 (163)
211 cd03075 GST_N_Mu GST_N family, 93.1 0.85 1.8E-05 32.2 7.8 63 103-165 9-79 (82)
212 PTZ00102 disulphide isomerase; 93.1 0.33 7.2E-06 44.2 7.1 54 88-149 376-437 (477)
213 PF08534 Redoxin: Redoxin; In 92.9 0.59 1.3E-05 35.6 7.3 47 87-137 28-82 (146)
214 cd02966 TlpA_like_family TlpA- 92.9 1.1 2.4E-05 31.2 8.2 38 101-138 29-75 (116)
215 PF13905 Thioredoxin_8: Thiore 92.6 1.2 2.6E-05 31.4 8.2 38 101-138 11-57 (95)
216 smart00594 UAS UAS domain. 92.6 0.76 1.7E-05 34.8 7.5 69 75-149 14-92 (122)
217 cd02969 PRX_like1 Peroxiredoxi 92.5 2.1 4.6E-05 33.8 10.3 27 86-116 24-50 (171)
218 COG4837 Uncharacterized protei 92.2 1.1 2.3E-05 33.9 7.5 77 85-165 2-97 (106)
219 cd03012 TlpA_like_DipZ_like Tl 91.9 1 2.2E-05 33.8 7.4 26 87-116 23-48 (126)
220 KOG1695 Glutathione S-transfer 91.8 0.9 2E-05 38.4 7.7 68 102-170 11-78 (206)
221 COG3634 AhpF Alkyl hydroperoxi 91.8 0.36 7.8E-06 44.7 5.6 80 72-158 102-184 (520)
222 PF06764 DUF1223: Protein of u 91.8 0.89 1.9E-05 38.3 7.6 76 90-170 2-100 (202)
223 TIGR01130 ER_PDI_fam protein d 90.8 1 2.2E-05 40.4 7.5 74 87-172 364-454 (462)
224 cd03011 TlpA_like_ScsD_MtbDsbE 90.7 0.33 7.1E-06 35.8 3.6 17 101-117 30-46 (123)
225 KOG0867 Glutathione S-transfer 90.6 1.3 2.9E-05 37.2 7.6 73 89-166 2-76 (226)
226 KOG0190 Protein disulfide isom 90.3 0.75 1.6E-05 43.7 6.4 69 78-153 32-111 (493)
227 PRK11509 hydrogenase-1 operon 90.1 3.8 8.2E-05 32.4 9.3 70 81-156 27-106 (132)
228 cd03007 PDI_a_ERp29_N PDIa fam 90.1 3.8 8.2E-05 31.5 9.1 73 79-152 9-91 (116)
229 cd02970 PRX_like2 Peroxiredoxi 89.9 1.4 3E-05 33.2 6.6 55 88-148 25-86 (149)
230 PF04134 DUF393: Protein of un 89.0 1.4 3E-05 32.6 5.8 63 102-165 6-75 (114)
231 PRK14018 trifunctional thiored 88.5 1.4 3E-05 42.2 6.7 26 87-116 56-81 (521)
232 COG0526 TrxA Thiol-disulfide i 88.5 1.7 3.7E-05 29.5 5.7 50 101-152 42-100 (127)
233 PF00578 AhpC-TSA: AhpC/TSA fa 88.3 1.5 3.2E-05 32.0 5.5 58 87-149 25-89 (124)
234 PF10568 Tom37: Outer mitochon 87.0 2.8 6.1E-05 29.4 6.0 55 103-165 14-72 (72)
235 PLN02919 haloacid dehalogenase 85.6 6.1 0.00013 40.8 10.0 27 86-116 419-445 (1057)
236 cd02960 AGR Anterior Gradient 85.5 1.6 3.6E-05 34.3 4.6 34 76-113 11-45 (130)
237 KOG4277 Uncharacterized conser 84.9 1.1 2.3E-05 40.8 3.6 75 75-154 31-112 (468)
238 KOG2501 Thioredoxin, nucleored 84.7 6.2 0.00013 32.2 7.7 44 80-127 26-76 (157)
239 cd03017 PRX_BCP Peroxiredoxin 83.8 5.7 0.00012 29.6 6.9 44 102-147 35-85 (140)
240 TIGR03143 AhpF_homolog putativ 83.8 2.5 5.4E-05 40.2 5.9 69 72-149 348-425 (555)
241 cd03018 PRX_AhpE_like Peroxire 83.3 4.4 9.6E-05 30.7 6.1 44 101-146 39-89 (149)
242 cd02971 PRX_family Peroxiredox 83.2 4.7 0.0001 30.0 6.2 46 101-147 33-85 (140)
243 COG5494 Predicted thioredoxin/ 83.0 4.3 9.2E-05 35.1 6.3 61 87-156 10-72 (265)
244 cd03014 PRX_Atyp2cys Peroxired 82.5 4.2 9.1E-05 30.8 5.7 43 102-145 37-85 (143)
245 PRK09437 bcp thioredoxin-depen 82.1 6.4 0.00014 30.3 6.7 44 102-147 42-92 (154)
246 cd03023 DsbA_Com1_like DsbA fa 81.8 2.8 6.1E-05 31.4 4.5 55 107-161 86-147 (154)
247 COG5429 Uncharacterized secret 80.9 2.4 5.3E-05 36.9 4.2 75 89-170 44-139 (261)
248 cd03023 DsbA_Com1_like DsbA fa 80.6 1 2.2E-05 33.9 1.7 25 87-116 6-30 (154)
249 COG3011 Predicted thiol-disulf 80.1 6.9 0.00015 31.2 6.2 74 87-168 8-87 (137)
250 PTZ00056 glutathione peroxidas 79.6 5.5 0.00012 32.9 5.8 16 101-116 49-64 (199)
251 cd03022 DsbA_HCCA_Iso DsbA fam 79.5 4.2 9.2E-05 32.1 5.0 55 107-161 124-185 (192)
252 TIGR02540 gpx7 putative glutat 79.3 4.9 0.00011 31.2 5.2 16 101-116 32-47 (153)
253 KOG4420 Uncharacterized conser 79.1 0.96 2.1E-05 40.1 1.2 72 90-166 27-100 (325)
254 PHA03075 glutaredoxin-like pro 77.8 2.8 6.1E-05 32.7 3.3 31 88-123 3-33 (123)
255 PLN02412 probable glutathione 76.6 9.8 0.00021 30.3 6.3 16 101-116 39-54 (167)
256 cd00340 GSH_Peroxidase Glutath 76.0 7.8 0.00017 30.0 5.5 55 88-148 23-92 (152)
257 PF01323 DSBA: DSBA-like thior 75.7 3.7 8.1E-05 32.4 3.6 54 107-160 124-185 (193)
258 PTZ00256 glutathione peroxidas 75.6 6.8 0.00015 31.6 5.2 46 101-147 51-111 (183)
259 cd03019 DsbA_DsbA DsbA family, 74.2 5.7 0.00012 30.9 4.3 50 107-156 100-156 (178)
260 cd03015 PRX_Typ2cys Peroxiredo 73.7 9.7 0.00021 30.1 5.6 26 102-127 41-73 (173)
261 PF09822 ABC_transp_aux: ABC-t 73.5 15 0.00033 31.2 7.1 72 72-143 11-88 (271)
262 PLN02399 phospholipid hydroper 72.7 11 0.00023 32.5 5.9 23 89-116 102-124 (236)
263 cd03146 GAT1_Peptidase_E Type 71.0 43 0.00093 27.7 9.1 103 75-187 18-126 (212)
264 PF13462 Thioredoxin_4: Thiore 70.6 8.2 0.00018 29.4 4.4 21 139-159 132-152 (162)
265 cd02968 SCO SCO (an acronym fo 70.5 16 0.00034 27.3 5.8 16 101-116 32-48 (142)
266 PF13462 Thioredoxin_4: Thiore 69.5 4.9 0.00011 30.7 2.9 35 87-126 13-55 (162)
267 cd02974 AhpF_NTD_N Alkyl hydro 68.2 13 0.00029 27.3 4.9 34 77-116 10-43 (94)
268 PRK03659 glutathione-regulated 67.3 33 0.00071 33.1 8.6 74 87-184 400-473 (601)
269 TIGR01626 ytfJ_HI0045 conserve 66.7 20 0.00043 29.7 6.1 38 86-128 59-105 (184)
270 cd03019 DsbA_DsbA DsbA family, 66.6 5.7 0.00012 30.9 2.8 34 87-125 16-55 (178)
271 PF02114 Phosducin: Phosducin; 65.8 14 0.00029 32.4 5.2 76 89-173 148-239 (265)
272 PRK10954 periplasmic protein d 65.3 13 0.00027 30.6 4.7 50 107-156 124-180 (207)
273 KOG0191 Thioredoxin/protein di 64.1 7.6 0.00017 35.0 3.5 56 87-149 48-107 (383)
274 cd02991 UAS_ETEA UAS family, E 61.7 47 0.001 25.1 7.0 69 78-149 7-82 (116)
275 cd00079 HELICc Helicase superf 59.9 61 0.0013 23.1 7.9 54 78-137 18-72 (131)
276 PRK03562 glutathione-regulated 59.6 59 0.0013 31.6 8.8 73 87-183 400-472 (621)
277 COG3340 PepE Peptidase E [Amin 59.4 1.1E+02 0.0023 26.5 9.3 68 78-151 21-92 (224)
278 PF10865 DUF2703: Domain of un 59.3 14 0.00029 28.8 3.6 47 101-154 13-72 (120)
279 KOG0190 Protein disulfide isom 59.1 4.7 0.0001 38.4 1.2 22 101-122 394-415 (493)
280 PRK00522 tpx lipid hydroperoxi 59.0 32 0.00069 27.2 5.9 15 102-116 55-70 (167)
281 TIGR03137 AhpC peroxiredoxin. 58.4 37 0.00081 27.4 6.3 26 102-127 43-75 (187)
282 COG4232 Thiol:disulfide interc 58.2 32 0.00068 33.5 6.6 64 80-149 464-540 (569)
283 cd04911 ACT_AKiii-YclM-BS_1 AC 56.9 11 0.00025 26.9 2.6 24 101-124 13-36 (76)
284 PRK15317 alkyl hydroperoxide r 56.2 22 0.00048 33.3 5.1 34 77-116 10-43 (517)
285 KOG0191 Thioredoxin/protein di 56.1 23 0.0005 31.9 5.1 28 85-117 161-188 (383)
286 PF13905 Thioredoxin_8: Thiore 56.1 64 0.0014 22.2 8.3 68 75-149 21-88 (95)
287 TIGR01689 EcbF-BcbF capsule bi 54.9 42 0.00091 26.0 5.7 51 72-127 24-87 (126)
288 KOG0912 Thiol-disulfide isomer 53.6 10 0.00022 34.5 2.3 65 81-154 6-85 (375)
289 PF13344 Hydrolase_6: Haloacid 52.9 84 0.0018 22.9 6.9 59 74-138 16-77 (101)
290 cd03081 TRX_Fd_NuoE_FDH_gamma 52.4 19 0.00041 25.3 3.2 28 142-171 53-80 (80)
291 PF10087 DUF2325: Uncharacteri 52.2 77 0.0017 22.8 6.5 54 79-137 40-95 (97)
292 TIGR00014 arsC arsenate reduct 50.9 23 0.00049 26.6 3.6 35 130-166 78-112 (114)
293 COG1331 Highly conserved prote 50.7 1E+02 0.0022 30.8 8.7 70 79-154 34-122 (667)
294 cd03010 TlpA_like_DsbE TlpA-li 50.3 98 0.0021 22.6 8.1 45 106-154 67-114 (127)
295 PRK14368 Maf-like protein; Pro 50.0 1.2E+02 0.0026 25.2 8.1 86 85-182 2-110 (193)
296 PF11287 DUF3088: Protein of u 49.9 41 0.00089 26.0 4.8 47 102-151 23-76 (112)
297 cd03016 PRX_1cys Peroxiredoxin 49.8 46 0.001 27.3 5.6 27 101-127 36-69 (203)
298 TIGR03140 AhpF alkyl hydropero 49.1 34 0.00074 32.1 5.2 34 77-116 10-43 (515)
299 PF15643 Tox-PL-2: Papain fold 48.8 57 0.0012 24.7 5.3 73 102-179 20-95 (100)
300 PF13353 Fer4_12: 4Fe-4S singl 48.3 16 0.00035 27.3 2.5 38 135-172 45-84 (139)
301 cd01474 vWA_ATR ATR (Anthrax T 47.1 1.1E+02 0.0025 24.1 7.4 75 89-170 106-180 (185)
302 PTZ00494 tuzin-like protein; P 46.2 72 0.0016 31.0 6.8 97 78-185 384-483 (664)
303 PF05673 DUF815: Protein of un 45.9 84 0.0018 27.5 6.7 84 78-170 44-133 (249)
304 PRK01655 spxA transcriptional 45.0 48 0.001 25.5 4.7 37 130-168 78-114 (131)
305 PRK10382 alkyl hydroperoxide r 44.9 71 0.0015 26.2 5.9 14 102-115 43-56 (187)
306 PLN02897 tetrahydrofolate dehy 44.7 2.4E+02 0.0052 25.8 9.7 72 71-143 66-144 (345)
307 KOG0913 Thiol-disulfide isomer 44.6 8.5 0.00018 33.5 0.4 61 84-153 37-106 (248)
308 COG0424 Maf Nucleotide-binding 44.6 1.4E+02 0.0029 25.2 7.6 66 107-172 12-99 (193)
309 PRK10669 putative cation:proto 44.5 1.3E+02 0.0028 28.6 8.3 72 87-182 417-488 (558)
310 PRK06490 glutamine amidotransf 44.2 25 0.00055 29.9 3.3 37 86-127 6-42 (239)
311 cd03032 ArsC_Spx Arsenate Redu 43.7 45 0.00098 24.8 4.2 37 130-168 78-114 (115)
312 cd05295 MDH_like Malate dehydr 42.7 56 0.0012 30.9 5.5 64 102-165 3-82 (452)
313 PF01451 LMWPc: Low molecular 42.5 50 0.0011 24.9 4.4 42 78-120 20-61 (138)
314 cd03024 DsbA_FrnE DsbA family, 41.1 1.1E+02 0.0023 24.3 6.3 53 107-159 132-192 (201)
315 PF04566 RNA_pol_Rpb2_4: RNA p 40.4 45 0.00097 22.8 3.4 18 147-164 1-18 (63)
316 TIGR03439 methyl_EasF probable 39.8 1.4E+02 0.0031 26.7 7.5 26 102-127 84-114 (319)
317 smart00852 MoCF_biosynth Proba 39.3 65 0.0014 24.4 4.6 62 106-168 20-83 (135)
318 KOG2501 Thioredoxin, nucleored 38.7 2.2E+02 0.0047 23.2 7.9 74 72-154 50-129 (157)
319 PRK14484 phosphotransferase ma 38.4 79 0.0017 24.6 4.9 50 131-184 17-66 (124)
320 PRK01175 phosphoribosylformylg 38.0 88 0.0019 27.2 5.7 25 102-126 13-37 (261)
321 PRK13190 putative peroxiredoxi 38.0 82 0.0018 25.8 5.3 26 102-127 39-71 (202)
322 PTZ00137 2-Cys peroxiredoxin; 37.8 1.4E+02 0.003 26.1 6.9 42 82-127 93-142 (261)
323 PRK14364 Maf-like protein; Pro 37.5 2.3E+02 0.005 23.2 7.9 74 107-182 6-102 (181)
324 PRK10606 btuE putative glutath 37.0 1E+02 0.0023 25.2 5.7 71 88-168 27-115 (183)
325 PTZ00253 tryparedoxin peroxida 36.7 1.3E+02 0.0029 24.3 6.3 26 102-127 48-80 (199)
326 PRK12559 transcriptional regul 36.6 80 0.0017 24.4 4.8 83 78-168 17-114 (131)
327 cd03082 TRX_Fd_NuoE_W_FDH_beta 36.6 45 0.00097 23.2 3.0 26 142-169 45-70 (72)
328 COG1905 NuoE NADH:ubiquinone o 36.5 31 0.00068 28.2 2.5 30 141-172 128-157 (160)
329 PF08616 SPA: Stabilization of 36.4 1.9E+02 0.004 21.9 6.6 42 71-116 9-50 (113)
330 PRK15000 peroxidase; Provision 35.9 1.6E+02 0.0034 24.3 6.6 26 87-115 34-59 (200)
331 PF09413 DUF2007: Domain of un 35.8 55 0.0012 21.7 3.3 45 102-151 8-52 (67)
332 cd04236 AAK_NAGS-Urea AAK_NAGS 35.6 91 0.002 27.3 5.4 58 108-173 4-68 (271)
333 TIGR01454 AHBA_synth_RP 3-amin 35.4 1.7E+02 0.0036 23.3 6.7 40 72-119 75-115 (205)
334 COG0521 MoaB Molybdopterin bio 34.9 1.2E+02 0.0025 25.1 5.6 63 107-170 30-95 (169)
335 cd01743 GATase1_Anthranilate_S 34.3 1.6E+02 0.0034 23.4 6.3 29 102-130 7-35 (184)
336 cd05564 PTS_IIB_chitobiose_lic 34.2 1.1E+02 0.0025 22.1 5.0 27 133-159 61-87 (96)
337 cd03064 TRX_Fd_NuoE TRX-like [ 34.0 58 0.0013 22.5 3.3 27 142-170 53-79 (80)
338 PF01071 GARS_A: Phosphoribosy 33.9 2.2E+02 0.0048 23.8 7.3 58 108-169 5-72 (194)
339 PF01323 DSBA: DSBA-like thior 33.8 45 0.00098 26.1 3.0 32 89-125 1-37 (193)
340 COG3917 NahD 2-hydroxychromene 33.7 1.1E+02 0.0023 26.0 5.2 41 127-167 154-200 (203)
341 PRK04425 Maf-like protein; Rev 33.3 2.8E+02 0.0061 23.0 8.0 84 87-182 4-110 (196)
342 cd01859 MJ1464 MJ1464. This f 33.1 2.2E+02 0.0047 21.6 7.3 26 144-169 71-96 (156)
343 PF07449 HyaE: Hydrogenase-1 e 32.6 73 0.0016 24.2 3.8 70 87-160 26-101 (107)
344 TIGR02364 dha_pts dihydroxyace 32.6 1.3E+02 0.0028 23.2 5.3 52 132-184 17-68 (125)
345 cd02072 Glm_B12_BD B12 binding 32.5 2.4E+02 0.0052 22.0 8.3 89 77-174 15-110 (128)
346 PF02780 Transketolase_C: Tran 32.2 57 0.0012 24.3 3.2 36 87-126 9-44 (124)
347 TIGR03596 GTPase_YlqF ribosome 31.7 1.9E+02 0.0042 24.7 6.8 90 77-170 11-104 (276)
348 PRK10537 voltage-gated potassi 31.6 1.3E+02 0.0029 27.6 6.1 70 87-182 240-309 (393)
349 PF01257 2Fe-2S_thioredx: Thio 31.6 35 0.00077 26.8 2.0 28 142-171 117-144 (145)
350 PF03575 Peptidase_S51: Peptid 31.6 1.1E+02 0.0025 23.7 5.0 41 105-151 1-43 (154)
351 PLN02683 pyruvate dehydrogenas 31.5 1E+02 0.0022 28.0 5.2 66 87-159 228-297 (356)
352 PRK07571 bidirectional hydroge 31.0 55 0.0012 26.8 3.1 29 141-171 139-167 (169)
353 KOG3171 Conserved phosducin-li 31.0 89 0.0019 27.3 4.4 33 141-173 209-252 (273)
354 TIGR01162 purE phosphoribosyla 30.7 1.6E+02 0.0035 23.9 5.8 24 102-125 10-33 (156)
355 CHL00144 odpB pyruvate dehydro 30.7 93 0.002 27.8 4.8 68 87-161 201-272 (327)
356 PLN02263 serine decarboxylase 30.7 3.3E+02 0.0071 25.9 8.6 74 102-181 186-268 (470)
357 PF07293 DUF1450: Protein of u 30.6 73 0.0016 22.9 3.3 30 141-170 43-74 (78)
358 PRK13599 putative peroxiredoxi 30.4 1.8E+02 0.004 24.2 6.3 14 101-114 39-52 (215)
359 KOG1672 ATP binding protein [P 30.2 1.5E+02 0.0032 25.4 5.5 78 78-160 75-159 (211)
360 PHA02558 uvsW UvsW helicase; P 30.2 3.2E+02 0.0069 25.6 8.5 66 88-159 345-411 (501)
361 PTZ00110 helicase; Provisional 30.1 2.8E+02 0.0061 26.4 8.2 66 77-148 366-432 (545)
362 TIGR02667 moaB_proteo molybden 30.1 1.2E+02 0.0026 24.2 5.0 62 106-167 24-88 (163)
363 COG0602 NrdG Organic radical a 30.1 43 0.00094 28.1 2.4 74 102-179 35-112 (212)
364 PLN02234 1-deoxy-D-xylulose-5- 30.0 2.7E+02 0.0059 27.5 8.2 65 87-159 544-612 (641)
365 COG1651 DsbG Protein-disulfide 30.0 45 0.00098 27.6 2.5 20 140-159 212-231 (244)
366 COG4285 Uncharacterized conser 29.9 88 0.0019 27.3 4.2 91 88-190 1-97 (253)
367 PRK11892 pyruvate dehydrogenas 29.7 1E+02 0.0022 29.1 5.0 65 87-159 340-409 (464)
368 TIGR03521 GldG gliding-associa 29.6 1.9E+02 0.0041 27.7 7.0 58 72-131 34-98 (552)
369 COG1651 DsbG Protein-disulfide 29.1 94 0.002 25.7 4.3 18 101-118 128-145 (244)
370 cd03020 DsbA_DsbC_DsbG DsbA fa 29.0 92 0.002 25.1 4.2 26 134-159 163-189 (197)
371 COG2179 Predicted hydrolase of 28.9 2.6E+02 0.0056 23.2 6.7 73 71-152 45-119 (175)
372 KOG3209 WW domain-containing p 28.8 75 0.0016 32.2 4.1 40 145-186 395-434 (984)
373 TIGR01122 ilvE_I branched-chai 28.8 1.9E+02 0.004 25.0 6.3 72 107-180 215-296 (298)
374 cd04333 ProX_deacylase This CD 28.6 98 0.0021 23.8 4.1 34 107-140 2-35 (148)
375 PF13419 HAD_2: Haloacid dehal 28.5 86 0.0019 23.3 3.7 24 158-181 133-156 (176)
376 COG1999 Uncharacterized protei 28.5 1.1E+02 0.0023 25.5 4.5 39 102-140 78-127 (207)
377 PRK05988 formate dehydrogenase 28.2 69 0.0015 25.7 3.2 29 141-171 126-154 (156)
378 KOG2454 Betaine aldehyde dehyd 28.2 1.3E+02 0.0028 28.5 5.3 78 75-154 204-282 (583)
379 PRK02478 Maf-like protein; Rev 28.2 3.5E+02 0.0076 22.5 8.3 74 107-182 12-114 (199)
380 COG1911 RPL30 Ribosomal protei 28.1 2.7E+02 0.0058 21.1 6.3 68 73-152 3-70 (100)
381 cd05565 PTS_IIB_lactose PTS_II 28.0 90 0.0019 23.2 3.6 24 132-155 61-84 (99)
382 TIGR00888 guaA_Nterm GMP synth 28.0 1.8E+02 0.0039 23.2 5.7 28 102-129 7-34 (188)
383 cd01473 vWA_CTRP CTRP for CS 28.0 3.2E+02 0.007 22.0 8.5 74 90-170 112-189 (192)
384 TIGR01428 HAD_type_II 2-haloal 28.0 3E+02 0.0065 21.6 7.0 30 154-183 144-173 (198)
385 PRK05298 excinuclease ABC subu 27.9 2E+02 0.0044 28.1 7.0 47 76-128 434-481 (652)
386 TIGR03759 conj_TIGR03759 integ 27.9 2.4E+02 0.0052 24.0 6.4 36 86-126 108-143 (200)
387 PRK13669 hypothetical protein; 27.7 92 0.002 22.5 3.4 30 141-170 43-74 (78)
388 PF04609 MCR_C: Methyl-coenzym 27.7 98 0.0021 27.4 4.2 85 79-170 121-207 (268)
389 TIGR00631 uvrb excinuclease AB 27.6 2.6E+02 0.0056 27.6 7.6 47 76-128 430-477 (655)
390 cd03083 TRX_Fd_NuoE_hoxF TRX-l 27.5 82 0.0018 22.0 3.2 27 142-170 53-79 (80)
391 TIGR00172 maf MAF protein. Thi 27.4 3.5E+02 0.0075 22.2 9.5 75 107-183 12-109 (183)
392 PRK12571 1-deoxy-D-xylulose-5- 27.4 1.9E+02 0.0042 28.3 6.7 66 87-160 504-573 (641)
393 PF00282 Pyridoxal_deC: Pyrido 27.3 2.2E+02 0.0047 25.8 6.6 83 87-181 139-229 (373)
394 COG4408 Uncharacterized protei 27.2 1.3E+02 0.0027 28.0 5.0 83 91-175 171-275 (431)
395 TIGR00614 recQ_fam ATP-depende 27.1 3.3E+02 0.0072 25.1 7.9 55 77-137 216-270 (470)
396 cd01480 vWA_collagen_alpha_1-V 27.0 1.8E+02 0.0039 23.1 5.5 39 89-127 112-150 (186)
397 TIGR01356 aroA 3-phosphoshikim 26.9 3.8E+02 0.0083 23.8 8.1 35 82-121 18-52 (409)
398 TIGR03590 PseG pseudaminic aci 26.4 3.6E+02 0.0077 23.1 7.6 30 86-123 30-59 (279)
399 cd03036 ArsC_like Arsenate Red 26.1 1.1E+02 0.0024 22.6 3.8 31 129-159 78-108 (111)
400 TIGR01382 PfpI intracellular p 25.8 3E+02 0.0066 21.0 7.1 86 74-172 78-166 (166)
401 PRK09301 circadian clock prote 25.7 1.5E+02 0.0032 22.6 4.4 73 88-173 7-91 (103)
402 PRK13189 peroxiredoxin; Provis 25.6 1.3E+02 0.0029 25.1 4.6 8 102-109 47-54 (222)
403 PRK05670 anthranilate synthase 25.6 2.4E+02 0.0053 22.5 6.1 26 102-127 8-33 (189)
404 cd03035 ArsC_Yffb Arsenate Red 25.6 57 0.0012 24.2 2.1 54 106-159 38-105 (105)
405 COG1393 ArsC Arsenate reductas 25.2 1.5E+02 0.0032 22.6 4.5 85 76-168 16-115 (117)
406 PRK07539 NADH dehydrogenase su 25.2 90 0.002 24.7 3.4 29 141-171 125-153 (154)
407 cd01858 NGP_1 NGP-1. Autoanti 25.0 3.1E+02 0.0068 20.8 8.7 13 156-168 82-94 (157)
408 PF12689 Acid_PPase: Acid Phos 24.7 3.8E+02 0.0083 21.7 8.5 74 72-152 45-133 (169)
409 cd03033 ArsC_15kD Arsenate Red 24.7 1.6E+02 0.0034 22.2 4.5 38 129-168 75-112 (113)
410 PRK06606 branched-chain amino 24.6 2.2E+02 0.0047 24.8 6.0 47 108-156 224-274 (306)
411 COG0191 Fba Fructose/tagatose 24.5 1.6E+02 0.0035 26.3 5.0 82 107-189 7-92 (286)
412 cd03013 PRX5_like Peroxiredoxi 24.2 2.9E+02 0.0063 21.5 6.1 55 87-145 29-93 (155)
413 cd01444 GlpE_ST GlpE sulfurtra 24.2 2.1E+02 0.0046 19.5 4.8 36 78-119 47-82 (96)
414 cd00555 Maf Nucleotide binding 24.0 4E+02 0.0086 21.7 7.1 21 107-127 8-30 (180)
415 PRK10563 6-phosphogluconate ph 24.0 1.6E+02 0.0035 23.6 4.7 35 74-118 90-124 (221)
416 cd00006 PTS_IIA_man PTS_IIA, P 23.9 2.1E+02 0.0045 21.3 5.0 27 157-184 40-66 (122)
417 KOG4169 15-hydroxyprostaglandi 23.9 5.1E+02 0.011 22.9 8.3 76 88-172 5-82 (261)
418 TIGR00853 pts-lac PTS system, 23.9 1.4E+02 0.0031 21.7 4.0 27 132-158 64-90 (95)
419 PF13911 AhpC-TSA_2: AhpC/TSA 23.8 2.7E+02 0.0059 20.1 5.6 27 108-135 26-52 (115)
420 cd03034 ArsC_ArsC Arsenate Red 23.7 1.7E+02 0.0037 21.6 4.5 31 129-159 76-106 (112)
421 PRK09212 pyruvate dehydrogenas 23.6 1.3E+02 0.0029 26.7 4.5 64 87-159 201-270 (327)
422 COG0394 Wzb Protein-tyrosine-p 23.5 1.4E+02 0.0029 23.4 4.0 41 80-121 22-62 (139)
423 PF02254 TrkA_N: TrkA-N domain 23.1 2.8E+02 0.0061 19.7 7.6 64 103-183 7-70 (116)
424 TIGR01501 MthylAspMutase methy 23.1 3.7E+02 0.0081 21.0 8.1 87 78-173 18-111 (134)
425 PTZ00182 3-methyl-2-oxobutanat 22.9 1.6E+02 0.0034 26.7 4.8 66 87-161 233-304 (355)
426 COG5309 Exo-beta-1,3-glucanase 22.7 5.7E+02 0.012 23.0 8.5 108 75-188 63-190 (305)
427 PRK05659 sulfur carrier protei 22.6 1.7E+02 0.0036 19.3 3.9 10 145-154 32-41 (66)
428 KOG3028 Translocase of outer m 22.6 4E+02 0.0086 24.2 7.2 75 89-171 3-78 (313)
429 PRK07053 glutamine amidotransf 22.6 1.1E+02 0.0025 25.8 3.7 89 87-186 2-94 (234)
430 cd00758 MoCF_BD MoCF_BD: molyb 22.5 1.7E+02 0.0036 22.2 4.3 62 107-169 22-85 (133)
431 cd05009 SIS_GlmS_GlmD_2 SIS (S 22.4 3.3E+02 0.0071 20.2 6.0 44 76-123 2-46 (153)
432 TIGR02654 circ_KaiB circadian 22.4 1.9E+02 0.0042 21.2 4.4 64 89-161 5-80 (87)
433 TIGR00436 era GTP-binding prot 22.2 4.8E+02 0.01 22.0 8.4 90 79-170 71-165 (270)
434 cd02978 KaiB_like KaiB-like fa 22.0 2.1E+02 0.0046 20.2 4.4 42 89-135 3-51 (72)
435 TIGR01449 PGP_bact 2-phosphogl 22.0 3.8E+02 0.0083 21.0 6.5 38 73-118 86-124 (213)
436 PF00731 AIRC: AIR carboxylase 21.9 1.7E+02 0.0036 23.6 4.3 47 89-138 2-51 (150)
437 PRK00884 Maf-like protein; Rev 21.9 4.6E+02 0.01 21.7 8.1 74 107-182 11-107 (194)
438 PF03610 EIIA-man: PTS system 21.8 1.3E+02 0.0029 22.1 3.5 27 158-185 41-67 (116)
439 PRK10853 putative reductase; P 21.7 1.9E+02 0.0042 21.9 4.5 25 143-169 91-116 (118)
440 TIGR01958 nuoE_fam NADH-quinon 21.6 1.2E+02 0.0025 23.9 3.3 29 141-171 119-147 (148)
441 PF09673 TrbC_Ftype: Type-F co 21.6 2.9E+02 0.0063 20.7 5.4 72 72-152 8-80 (113)
442 KOG2244 Highly conserved prote 21.4 1.5E+02 0.0032 29.4 4.5 68 76-146 100-180 (786)
443 CHL00188 hisH imidazole glycer 21.4 4.5E+02 0.0097 21.8 7.0 30 89-124 3-32 (210)
444 PRK09266 hypothetical protein; 21.1 3.1E+02 0.0067 23.2 6.1 63 108-170 196-260 (266)
445 PRK09563 rbgA GTPase YlqF; Rev 21.0 4.6E+02 0.01 22.5 7.3 89 78-170 15-107 (287)
446 PF08874 DUF1835: Domain of un 20.7 3.1E+02 0.0068 20.2 5.4 43 78-126 77-123 (124)
447 PLN02590 probable tyrosine dec 20.5 5.9E+02 0.013 24.6 8.4 82 88-181 228-322 (539)
448 PLN02225 1-deoxy-D-xylulose-5- 20.5 2.9E+02 0.0062 27.8 6.4 65 87-159 567-635 (701)
449 PRK14367 Maf-like protein; Pro 20.4 5.1E+02 0.011 21.6 9.0 37 147-183 79-115 (202)
450 COG2608 CopZ Copper chaperone 20.4 2.2E+02 0.0047 19.4 4.1 24 102-125 12-37 (71)
451 PRK12858 tagatose 1,6-diphosph 20.4 2.7E+02 0.0059 25.2 5.8 73 106-184 186-276 (340)
452 PRK07714 hypothetical protein; 20.3 3.5E+02 0.0076 19.7 6.7 16 107-122 50-65 (100)
453 PRK13527 glutamine amidotransf 20.3 2.4E+02 0.0052 22.8 5.1 26 102-127 12-37 (200)
454 PRK13226 phosphoglycolate phos 20.3 4.8E+02 0.01 21.3 7.0 22 162-183 155-176 (229)
No 1
>PRK10824 glutaredoxin-4; Provisional
Probab=99.95 E-value=4.5e-27 Score=180.98 Aligned_cols=98 Identities=36% Similarity=0.764 Sum_probs=91.7
Q ss_pred HHHHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEe
Q 029558 76 ELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFG 155 (191)
Q Consensus 76 ~~~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VG 155 (191)
++.+.+++++++++|+||+|++|+.|+||||.+++++|++++++|.++||+++++++++|++++||+|||||||||++||
T Consensus 3 ~~~~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G~~IG 82 (115)
T PRK10824 3 TTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVG 82 (115)
T ss_pred hHHHHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEECCEEEc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred echhhHHHHH-----HHHhhcCc
Q 029558 156 GCDITVGKLM-----DFLNLLNF 173 (191)
Q Consensus 156 G~del~~~lk-----e~L~~lg~ 173 (191)
|+|++.++++ ++|++.|.
T Consensus 83 G~ddl~~l~~~G~L~~lL~~~~~ 105 (115)
T PRK10824 83 GCDIVIEMYQRGELQQLIKETAA 105 (115)
T ss_pred ChHHHHHHHHCCCHHHHHHHHHh
Confidence 9999999854 67766664
No 2
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.7e-26 Score=172.85 Aligned_cols=90 Identities=54% Similarity=1.000 Sum_probs=87.3
Q ss_pred HHHHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHcC-CCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEE
Q 029558 76 ELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLN-APFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFF 154 (191)
Q Consensus 76 ~~~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~g-V~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~V 154 (191)
++.+.+++.+++|+|++|+||||.+|.|+|+.+++++|..+| ++|.++||..|+++|+.|+++++|||+||+||||++|
T Consensus 3 ~i~~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfv 82 (105)
T COG0278 3 EILDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFV 82 (105)
T ss_pred hHHHHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEe
Confidence 567899999999999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred eechhhHHHHH
Q 029558 155 GGCDITVGKLM 165 (191)
Q Consensus 155 GG~del~~~lk 165 (191)
||+|.+.+.++
T Consensus 83 GG~DIv~Em~q 93 (105)
T COG0278 83 GGCDIVREMYQ 93 (105)
T ss_pred ccHHHHHHHHH
Confidence 99999999876
No 3
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.92 E-value=5.5e-25 Score=163.89 Aligned_cols=88 Identities=55% Similarity=1.015 Sum_probs=84.3
Q ss_pred HHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEeec
Q 029558 78 KSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGC 157 (191)
Q Consensus 78 ~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~ 157 (191)
.+.+++++++++|+||++++++.|+||||.+++++|+++|++|+++||+++++.+++|++++|++++|+|||||++|||+
T Consensus 2 ~~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ 81 (97)
T TIGR00365 2 IERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGGC 81 (97)
T ss_pred hHHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCh
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHH
Q 029558 158 DITVGKLM 165 (191)
Q Consensus 158 del~~~lk 165 (191)
|++.++++
T Consensus 82 ddl~~l~~ 89 (97)
T TIGR00365 82 DIIMEMYQ 89 (97)
T ss_pred HHHHHHHH
Confidence 99999876
No 4
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.90 E-value=9.8e-24 Score=154.53 Aligned_cols=85 Identities=59% Similarity=1.039 Sum_probs=81.2
Q ss_pred HHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEeechhh
Q 029558 81 LDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDIT 160 (191)
Q Consensus 81 l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del 160 (191)
+++++++++||||++++++.|+||||.+++++|+++|++|+++||+++++.+++|.+.+|+.++|+|||||++|||++++
T Consensus 1 ~~~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l 80 (90)
T cd03028 1 IKKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIV 80 (90)
T ss_pred ChhhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHH
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 029558 161 VGKLM 165 (191)
Q Consensus 161 ~~~lk 165 (191)
.++++
T Consensus 81 ~~l~~ 85 (90)
T cd03028 81 KEMHE 85 (90)
T ss_pred HHHHH
Confidence 98876
No 5
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.89 E-value=2.8e-23 Score=155.25 Aligned_cols=93 Identities=20% Similarity=0.487 Sum_probs=78.7
Q ss_pred HHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCH---HHHHHHHhhCCCCcccEEEECCEEEeech
Q 029558 82 DKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENE---MLRQGLKEYSSWPTFPQLYIEGEFFGGCD 158 (191)
Q Consensus 82 ~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~---~~r~~Lk~~sg~~tvP~IfI~G~~VGG~d 158 (191)
++++++++|+||++ |+||||.+++++|+++|++|+++||++++ +.++++.+++|++++|+|||||++|||+|
T Consensus 2 ~~~i~~~~Vvvysk-----~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~d 76 (99)
T TIGR02189 2 RRMVSEKAVVIFSR-----SSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLE 76 (99)
T ss_pred hhhhccCCEEEEEC-----CCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHH
Confidence 56788999999999 59999999999999999999999998764 46677888899999999999999999999
Q ss_pred hhHHHHH--HHHhhcCcCCcceE
Q 029558 159 ITVGKLM--DFLNLLNFSSTIWL 179 (191)
Q Consensus 159 el~~~lk--e~L~~lg~~~~~wl 179 (191)
++.++++ ++.+.|.-.++.|+
T Consensus 77 dl~~l~~~G~L~~~l~~~~~~~~ 99 (99)
T TIGR02189 77 NVMALHISGSLVPMLKQAGALWL 99 (99)
T ss_pred HHHHHHHcCCHHHHHHHhCcccC
Confidence 9999875 34444444445553
No 6
>PTZ00062 glutaredoxin; Provisional
Probab=99.89 E-value=7.8e-23 Score=171.26 Aligned_cols=92 Identities=43% Similarity=0.840 Sum_probs=88.3
Q ss_pred ChHHHHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEE
Q 029558 74 TPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEF 153 (191)
Q Consensus 74 ~~~~~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~ 153 (191)
..++.+.+++++++++|+||+||+|..|+||||++++++|++++++|+++||+++++.+++|++++||+|+|||||||++
T Consensus 99 ~~~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~ 178 (204)
T PTZ00062 99 SEDTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGEL 178 (204)
T ss_pred HHHHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCEE
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeechhhHHHHH
Q 029558 154 FGGCDITVGKLM 165 (191)
Q Consensus 154 VGG~del~~~lk 165 (191)
|||+|+++++++
T Consensus 179 IGG~d~l~~l~~ 190 (204)
T PTZ00062 179 IGGHDIIKELYE 190 (204)
T ss_pred EcChHHHHHHHH
Confidence 999999999876
No 7
>PHA03050 glutaredoxin; Provisional
Probab=99.88 E-value=4.4e-22 Score=151.34 Aligned_cols=92 Identities=23% Similarity=0.392 Sum_probs=83.7
Q ss_pred HHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHcCC---CceEeecCC---CHHHHHHHHhhCCCCcccEEEECC
Q 029558 78 KSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNA---PFETVNILE---NEMLRQGLKEYSSWPTFPQLYIEG 151 (191)
Q Consensus 78 ~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV---~y~~vdV~~---d~~~r~~Lk~~sg~~tvP~IfI~G 151 (191)
++.+++++++++|+||++. +||||.+++++|+++++ +|+.+||++ +.+.+++|++.+|+.+||+|||||
T Consensus 3 ~~~v~~~i~~~~V~vys~~-----~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g 77 (108)
T PHA03050 3 EEFVQQRLANNKVTIFVKF-----TCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGK 77 (108)
T ss_pred HHHHHHHhccCCEEEEECC-----CChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECC
Confidence 4678899999999999995 99999999999999999 799999986 678999999999999999999999
Q ss_pred EEEeechhhHHHHH-----HHHhhcCcC
Q 029558 152 EFFGGCDITVGKLM-----DFLNLLNFS 174 (191)
Q Consensus 152 ~~VGG~del~~~lk-----e~L~~lg~~ 174 (191)
++|||+|++.++++ +.|+++|..
T Consensus 78 ~~iGG~ddl~~l~~~g~L~~~l~~~~~~ 105 (108)
T PHA03050 78 TSIGGYSDLLEIDNMDALGDILSSIGVL 105 (108)
T ss_pred EEEeChHHHHHHHHcCCHHHHHHHcccc
Confidence 99999999999764 777877753
No 8
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.4e-22 Score=169.30 Aligned_cols=89 Identities=52% Similarity=0.925 Sum_probs=87.4
Q ss_pred HHHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEee
Q 029558 77 LKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGG 156 (191)
Q Consensus 77 ~~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG 156 (191)
+++.++++.+.++|++|+||+|++|.|+|+++++.+|+++||+|..+||.+|+++|+.+|+++.||||||+||||+++||
T Consensus 128 ~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFiGG 207 (227)
T KOG0911|consen 128 LDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFIGG 207 (227)
T ss_pred HHHHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEeccC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHH
Q 029558 157 CDITVGKLM 165 (191)
Q Consensus 157 ~del~~~lk 165 (191)
+|.++++++
T Consensus 208 lDIl~~m~~ 216 (227)
T KOG0911|consen 208 LDILKEMHE 216 (227)
T ss_pred cHHHHHHhh
Confidence 999999987
No 9
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2e-20 Score=141.76 Aligned_cols=96 Identities=25% Similarity=0.544 Sum_probs=86.0
Q ss_pred HHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCC---HHHHHHHHhhCCCCcccEEEECCEEE
Q 029558 78 KSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN---EMLRQGLKEYSSWPTFPQLYIEGEFF 154 (191)
Q Consensus 78 ~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d---~~~r~~Lk~~sg~~tvP~IfI~G~~V 154 (191)
.+.+++++.+++||||+|+ +||||.+++++|.+.++++..+++|++ .+++++|.+++|++|+|.|||+|++|
T Consensus 4 ~~~v~~~i~~~~VVifSKs-----~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~i 78 (104)
T KOG1752|consen 4 EAKVRKMISENPVVIFSKS-----SCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFI 78 (104)
T ss_pred HHHHHHHhhcCCEEEEECC-----cCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEE
Confidence 4578999999999999996 999999999999999999999999863 68999999999999999999999999
Q ss_pred eechhhHHHHH--HHHhhcCcCCcce
Q 029558 155 GGCDITVGKLM--DFLNLLNFSSTIW 178 (191)
Q Consensus 155 GG~del~~~lk--e~L~~lg~~~~~w 178 (191)
||++++.++++ ++++.|.-..++|
T Consensus 79 GG~~dl~~lh~~G~L~~~l~~~~~~~ 104 (104)
T KOG1752|consen 79 GGASDLMALHKSGELVPLLKEAGALW 104 (104)
T ss_pred cCHHHHHHHHHcCCHHHHHHHhhccC
Confidence 99999999987 6666666556665
No 10
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.79 E-value=3.7e-19 Score=124.56 Aligned_cols=71 Identities=18% Similarity=0.289 Sum_probs=67.3
Q ss_pred cEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHH
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKL 164 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~l 164 (191)
+|++|++ ++||+|++|+++|+++|++|+.+||+++++.++++++++|..++|+||+||++|||++++.++.
T Consensus 2 ~v~ly~~-----~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~~ 72 (73)
T cd03027 2 RVTIYSR-----LGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKLVGGLTDLKSLE 72 (73)
T ss_pred EEEEEec-----CCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHhhc
Confidence 6899999 5999999999999999999999999999999999999999999999999999999999987753
No 11
>PRK10638 glutaredoxin 3; Provisional
Probab=99.79 E-value=1.1e-18 Score=125.33 Aligned_cols=73 Identities=26% Similarity=0.485 Sum_probs=69.2
Q ss_pred CcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHH
Q 029558 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLM 165 (191)
Q Consensus 88 ~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lk 165 (191)
.+|++|++ ++||||++++.+|+++|++|+++||+.+++.++++.+.+|+.++|+||+||++|||++++.+++.
T Consensus 2 ~~v~ly~~-----~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 2 ANVEIYTK-----ATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred CcEEEEEC-----CCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHH
Confidence 47999999 49999999999999999999999999998889999999999999999999999999999998875
No 12
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.78 E-value=1e-18 Score=121.70 Aligned_cols=72 Identities=25% Similarity=0.465 Sum_probs=67.3
Q ss_pred cEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCC-cccEEEECCEEEeechhhHHHHH
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWP-TFPQLYIEGEFFGGCDITVGKLM 165 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~-tvP~IfI~G~~VGG~del~~~lk 165 (191)
+|+||++ ++||+|.+++++|+++|++|+++||+.+++.++++.+..|+. ++|+||+||++|||++++.++++
T Consensus 1 ~i~ly~~-----~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 1 KVEIYTK-----PNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred CEEEEeC-----CCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHh
Confidence 5899999 599999999999999999999999999988999998888888 99999999999999999988875
No 13
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.78 E-value=1.1e-18 Score=124.56 Aligned_cols=75 Identities=28% Similarity=0.452 Sum_probs=67.1
Q ss_pred hhcCCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHH
Q 029558 84 VVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGK 163 (191)
Q Consensus 84 ~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~ 163 (191)
+.++++|+||++ ++||+|++++++|+++|++|+++||+++++. +++++.+|+.++|+||+||++|||++++.++
T Consensus 4 ~~~~~~V~ly~~-----~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~-~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~ 77 (79)
T TIGR02190 4 ARKPESVVVFTK-----PGCPFCAKAKATLKEKGYDFEEIPLGNDARG-RSLRAVTGATTVPQVFIGGKLIGGSDELEAY 77 (79)
T ss_pred cCCCCCEEEEEC-----CCCHhHHHHHHHHHHcCCCcEEEECCCChHH-HHHHHHHCCCCcCeEEECCEEEcCHHHHHHH
Confidence 446889999999 5999999999999999999999999887554 5677788999999999999999999998876
Q ss_pred H
Q 029558 164 L 164 (191)
Q Consensus 164 l 164 (191)
+
T Consensus 78 l 78 (79)
T TIGR02190 78 L 78 (79)
T ss_pred h
Confidence 5
No 14
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.77 E-value=1.7e-18 Score=122.39 Aligned_cols=71 Identities=25% Similarity=0.461 Sum_probs=67.7
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHH
Q 029558 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLM 165 (191)
Q Consensus 90 VVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lk 165 (191)
|+||++ ++||+|.+++++|+++|++|+++||+.+++.++++++.+|+.++|+|||||+++||++++.++++
T Consensus 1 v~ly~~-----~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~ 71 (79)
T TIGR02181 1 VTIYTK-----PYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDR 71 (79)
T ss_pred CEEEec-----CCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHH
Confidence 579998 59999999999999999999999999999999999999999999999999999999999999876
No 15
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.76 E-value=3.8e-18 Score=136.44 Aligned_cols=94 Identities=19% Similarity=0.365 Sum_probs=78.9
Q ss_pred cEEEEEecCCCC-CCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCC----CcccEEEECCEEEeechhhHHH
Q 029558 89 KVVLFMKGTKDF-PQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSW----PTFPQLYIEGEFFGGCDITVGK 163 (191)
Q Consensus 89 kVVIYsk~~~~~-p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~----~tvP~IfI~G~~VGG~del~~~ 163 (191)
+|+||+++++.. .+||+|++|+++|++++|+|+++||+++++.+++|+++++. .++|||||||++|||+|++.++
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L 80 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL 80 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 589999966554 58999999999999999999999999999999999998775 9999999999999999999998
Q ss_pred HH-----HHHhhcCcCCcceEEeeCC
Q 029558 164 LM-----DFLNLLNFSSTIWLVVCDL 184 (191)
Q Consensus 164 lk-----e~L~~lg~~~~~wl~~~~~ 184 (191)
++ ++|+.+. ...-..+|++
T Consensus 81 ~e~G~L~~lL~~~~--~~~~~~~C~~ 104 (147)
T cd03031 81 NESGELRKLLKGIR--ARAGGGVCEG 104 (147)
T ss_pred HHcCCHHHHHhhcc--cccCCCCCCC
Confidence 65 6666652 3333345554
No 16
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.76 E-value=4.4e-18 Score=118.66 Aligned_cols=70 Identities=26% Similarity=0.433 Sum_probs=63.9
Q ss_pred cEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHH
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKL 164 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~l 164 (191)
+|+||++. +||+|.+++++|+++|++|+++||+++++ .++++..+|..++|+||+||+++||++++.+++
T Consensus 2 ~v~lys~~-----~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~-~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 2 SVSLFTKP-----GCPFCARAKAALQENGISYEEIPLGKDIT-GRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYF 71 (72)
T ss_pred eEEEEECC-----CCHHHHHHHHHHHHcCCCcEEEECCCChh-HHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHh
Confidence 68999994 99999999999999999999999998774 467888899999999999999999999988764
No 17
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=4.9e-18 Score=122.50 Aligned_cols=72 Identities=25% Similarity=0.506 Sum_probs=65.3
Q ss_pred cEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCH--HHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHH
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENE--MLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLM 165 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~--~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lk 165 (191)
.|+||++ ++||||.+++++|+++|++|+++|+++++ +.++.+++..|.+++|||||||+++||++++.++.+
T Consensus 2 ~v~iyt~-----~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~ 75 (80)
T COG0695 2 NVTIYTK-----PGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEA 75 (80)
T ss_pred CEEEEEC-----CCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHh
Confidence 6899999 59999999999999999999999999876 777778888899999999999999999998777654
No 18
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.75 E-value=8e-18 Score=121.16 Aligned_cols=76 Identities=20% Similarity=0.392 Sum_probs=68.5
Q ss_pred CcEEEEEecCCCCCCChhHHHHHHHHHH-----cCCCceEeecCCCHHHHHHHHhhCCC--CcccEEEECCEEEeechhh
Q 029558 88 NKVVLFMKGTKDFPQCGFSHTVVQILKS-----LNAPFETVNILENEMLRQGLKEYSSW--PTFPQLYIEGEFFGGCDIT 160 (191)
Q Consensus 88 ~kVVIYsk~~~~~p~Cp~C~kak~iL~~-----~gV~y~~vdV~~d~~~r~~Lk~~sg~--~tvP~IfI~G~~VGG~del 160 (191)
.+|+||++ ++||+|.+|+++|++ .+++|+.+||+++...++++.+++|+ .++|+|||||++|||++++
T Consensus 1 m~v~iy~~-----~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~ 75 (85)
T PRK11200 1 MFVVIFGR-----PGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDF 75 (85)
T ss_pred CEEEEEeC-----CCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHH
Confidence 37999999 599999999999999 79999999999887667788888876 8999999999999999999
Q ss_pred HHHHHHHH
Q 029558 161 VGKLMDFL 168 (191)
Q Consensus 161 ~~~lke~L 168 (191)
.+++++.+
T Consensus 76 ~~~~~~~~ 83 (85)
T PRK11200 76 EAYVKENL 83 (85)
T ss_pred HHHHHHhc
Confidence 99988765
No 19
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.72 E-value=3.6e-17 Score=118.77 Aligned_cols=72 Identities=22% Similarity=0.463 Sum_probs=64.0
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHHcC-----CCceEeecCCCHHHHHHHHhhCCC--CcccEEEECCEEEeechhhHH
Q 029558 90 VVLFMKGTKDFPQCGFSHTVVQILKSLN-----APFETVNILENEMLRQGLKEYSSW--PTFPQLYIEGEFFGGCDITVG 162 (191)
Q Consensus 90 VVIYsk~~~~~p~Cp~C~kak~iL~~~g-----V~y~~vdV~~d~~~r~~Lk~~sg~--~tvP~IfI~G~~VGG~del~~ 162 (191)
|+||++ ++||||.+|+++|++++ ++|+.+||+.+...++++.+.+|+ .++|+|||||+++||++++.+
T Consensus 2 V~vys~-----~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~ 76 (86)
T TIGR02183 2 VVIFGR-----PGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQ 76 (86)
T ss_pred EEEEeC-----CCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHH
Confidence 789999 49999999999999984 679999998766566778888886 899999999999999999999
Q ss_pred HHHH
Q 029558 163 KLMD 166 (191)
Q Consensus 163 ~lke 166 (191)
++++
T Consensus 77 ~~~~ 80 (86)
T TIGR02183 77 LVKE 80 (86)
T ss_pred HHHh
Confidence 8776
No 20
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.70 E-value=1e-16 Score=108.32 Aligned_cols=71 Identities=45% Similarity=0.809 Sum_probs=66.6
Q ss_pred cEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHH
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKL 164 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~l 164 (191)
+|++|++. +||+|++++.+|++++++|+++|+.++++.++++++++|..++|++|+||+++||++++.++.
T Consensus 1 ~v~ly~~~-----~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~~ 71 (72)
T cd02066 1 KVVVFSKS-----TCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFINGEFIGGYDDLKALH 71 (72)
T ss_pred CEEEEECC-----CCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHhh
Confidence 58999994 999999999999999999999999999889999999999999999999999999999987754
No 21
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.69 E-value=1.5e-16 Score=112.08 Aligned_cols=72 Identities=28% Similarity=0.512 Sum_probs=65.6
Q ss_pred cEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCC---HHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHH
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN---EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLM 165 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d---~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lk 165 (191)
+|++|++ ++||+|.+++++|++++++|+.++++.+ .+.++++++++|++++|+||+||+++||+++++++.+
T Consensus 1 ~v~~y~~-----~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~ 75 (82)
T cd03419 1 PVVVFSK-----SYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHK 75 (82)
T ss_pred CEEEEEc-----CCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHH
Confidence 5899999 4999999999999999999999888754 5678889999999999999999999999999998876
No 22
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.68 E-value=1.9e-16 Score=111.69 Aligned_cols=71 Identities=30% Similarity=0.572 Sum_probs=64.4
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHHcCCC--ceEeecCCC---HHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHH
Q 029558 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAP--FETVNILEN---EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKL 164 (191)
Q Consensus 90 VVIYsk~~~~~p~Cp~C~kak~iL~~~gV~--y~~vdV~~d---~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~l 164 (191)
|++|++ +|||+|++++++|++++++ |+.++|+.+ ++.++++++.+|..++|+||+||+++||++++++++
T Consensus 1 V~~f~~-----~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~ 75 (84)
T TIGR02180 1 VVVFSK-----SYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALY 75 (84)
T ss_pred CEEEEC-----CCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHH
Confidence 578998 5999999999999999998 888888753 567788999999999999999999999999999987
Q ss_pred H
Q 029558 165 M 165 (191)
Q Consensus 165 k 165 (191)
+
T Consensus 76 ~ 76 (84)
T TIGR02180 76 K 76 (84)
T ss_pred H
Confidence 7
No 23
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.67 E-value=2e-16 Score=106.69 Aligned_cols=60 Identities=37% Similarity=0.705 Sum_probs=57.6
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEE
Q 029558 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFF 154 (191)
Q Consensus 90 VVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~V 154 (191)
|++|++ ++||+|.+++++|+++|++|+.+||+++++.++++++.+|..++|+||+||++|
T Consensus 1 V~vy~~-----~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTK-----PGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEES-----TTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEc-----CCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEECCEEC
Confidence 789999 599999999999999999999999999999999999999999999999999986
No 24
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.62 E-value=2.1e-15 Score=105.46 Aligned_cols=68 Identities=21% Similarity=0.333 Sum_probs=60.8
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCE-EEeechhhHHHHH
Q 029558 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGE-FFGGCDITVGKLM 165 (191)
Q Consensus 90 VVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~-~VGG~del~~~lk 165 (191)
|+||++ ++||+|++++++|+++|++|+++||+++++.++++++. |..++|+|+++|+ ++||++. +.+.
T Consensus 1 v~ly~~-----~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~-g~~~vP~v~~~g~~~~~G~~~--~~~~ 69 (72)
T TIGR02194 1 ITVYSK-----NNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQ-GFRQVPVIVADGDLSWSGFRP--DKLK 69 (72)
T ss_pred CEEEeC-----CCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHc-CCcccCEEEECCCcEEeccCH--HHHH
Confidence 579999 59999999999999999999999999999999998875 9999999999775 9999998 4443
No 25
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.61 E-value=5.6e-15 Score=106.67 Aligned_cols=72 Identities=13% Similarity=0.266 Sum_probs=64.9
Q ss_pred cEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHHHHH
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLMDFL 168 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lke~L 168 (191)
+|++|++ ++||+|.+++++|+++||+|+++||+++++..++++. .|..++|+|+++|+.++||+. ++++++.
T Consensus 2 ~v~lYt~-----~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~-~g~~~vPvv~i~~~~~~Gf~~--~~l~~~~ 73 (81)
T PRK10329 2 RITIYTR-----NDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRA-QGFRQLPVVIAGDLSWSGFRP--DMINRLH 73 (81)
T ss_pred EEEEEeC-----CCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cCCCCcCEEEECCEEEecCCH--HHHHHHH
Confidence 6899999 5999999999999999999999999999988888877 499999999999999999998 6555544
No 26
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.58 E-value=9.3e-15 Score=108.44 Aligned_cols=76 Identities=21% Similarity=0.271 Sum_probs=66.9
Q ss_pred EEEEEecCCCC-CCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCC----CcccEEEECCEEEeechhhHHHH
Q 029558 90 VVLFMKGTKDF-PQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSW----PTFPQLYIEGEFFGGCDITVGKL 164 (191)
Q Consensus 90 VVIYsk~~~~~-p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~----~tvP~IfI~G~~VGG~del~~~l 164 (191)
|+||+.++... ..=..|++++.+|+..+|+|+++||+.+++.+++|.+.++. .++|||||||++|||+|++.++.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l~ 81 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEAK 81 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHHH
Confidence 78888876654 22456899999999999999999999999999999999864 99999999999999999999886
Q ss_pred H
Q 029558 165 M 165 (191)
Q Consensus 165 k 165 (191)
+
T Consensus 82 e 82 (92)
T cd03030 82 E 82 (92)
T ss_pred h
Confidence 5
No 27
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.56 E-value=1.3e-14 Score=132.48 Aligned_cols=71 Identities=18% Similarity=0.362 Sum_probs=61.3
Q ss_pred CcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHH---H-----HHhhCCCCcccEEEECCEEEeechh
Q 029558 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQ---G-----LKEYSSWPTFPQLYIEGEFFGGCDI 159 (191)
Q Consensus 88 ~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~---~-----Lk~~sg~~tvP~IfI~G~~VGG~de 159 (191)
++|+||++ |+||+|++++++|+++||+|+++||+++++..+ + |...+|..++|||||||++|||+|+
T Consensus 2 ~~V~vys~-----~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~ 76 (410)
T PRK12759 2 VEVRIYTK-----TNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDN 76 (410)
T ss_pred CcEEEEeC-----CCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchH
Confidence 57999999 599999999999999999999999998765433 3 2234789999999999999999999
Q ss_pred hHHH
Q 029558 160 TVGK 163 (191)
Q Consensus 160 l~~~ 163 (191)
+.+.
T Consensus 77 l~~~ 80 (410)
T PRK12759 77 LMAR 80 (410)
T ss_pred HHHH
Confidence 9874
No 28
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.48 E-value=3.5e-13 Score=91.44 Aligned_cols=73 Identities=21% Similarity=0.285 Sum_probs=64.4
Q ss_pred cEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHHHHH
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLMDFL 168 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lke~L 168 (191)
+|++|+.. |||+|++++.+|++.+++|..+|++++++..+++.+..|..++|+++++|+.++|++. +.+++++
T Consensus 1 ~i~lf~~~-----~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~--~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTP-----WCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKIIVGFDP--EKLDQLL 73 (74)
T ss_pred CEEEEcCC-----CChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEEEeeCCH--HHHHHHh
Confidence 47899884 9999999999999999999999999988888888888899999999999999999877 5555544
No 29
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.42 E-value=1.8e-12 Score=87.83 Aligned_cols=71 Identities=24% Similarity=0.447 Sum_probs=63.3
Q ss_pred cEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHHH
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLMD 166 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lke 166 (191)
+|++|+.. +||+|.+++.+|++.+++|..+|++.+++..+++.++.+..++|+++++|+.++|++. +.+++
T Consensus 1 ~v~l~~~~-----~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~~i~g~~~--~~l~~ 71 (73)
T cd02976 1 EVTVYTKP-----DCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHLSGFRP--DKLRA 71 (73)
T ss_pred CEEEEeCC-----CChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCEEEecCCH--HHHHh
Confidence 47899884 9999999999999999999999999888888889888888999999999999999987 44443
No 30
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.28 E-value=2.9e-11 Score=83.53 Aligned_cols=66 Identities=21% Similarity=0.391 Sum_probs=57.2
Q ss_pred cEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhC-CCCcccEEEE-CCEEEeechh
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYS-SWPTFPQLYI-EGEFFGGCDI 159 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~s-g~~tvP~IfI-~G~~VGG~de 159 (191)
+|++|+.. |||+|++++.+|++++++|+.+|++++++..+.+++++ +..++|++++ ||+.+.....
T Consensus 1 ~v~ly~~~-----~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~~ 68 (77)
T TIGR02200 1 TITVYGTT-----WCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNPSA 68 (77)
T ss_pred CEEEEECC-----CChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCCCH
Confidence 47899985 99999999999999999999999999888888888886 8999999977 6677765543
No 31
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=4.9e-11 Score=103.59 Aligned_cols=87 Identities=17% Similarity=0.339 Sum_probs=77.1
Q ss_pred cCCcEEEEEecCCCC-CCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCC----CcccEEEECCEEEeechhh
Q 029558 86 TGNKVVLFMKGTKDF-PQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSW----PTFPQLYIEGEFFGGCDIT 160 (191)
Q Consensus 86 ~~~kVVIYsk~~~~~-p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~----~tvP~IfI~G~~VGG~del 160 (191)
.++.||||+.+.+.. .+...|..|+.+|+..+|.|+++||..|...+++|+++.|. .+.|+|||+|.+|||.+++
T Consensus 129 ge~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV 208 (281)
T KOG2824|consen 129 GEDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEV 208 (281)
T ss_pred CCceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHh
Confidence 356899999998886 88999999999999999999999999999999999988764 7789999999999999999
Q ss_pred HHHH-----HHHHhhcC
Q 029558 161 VGKL-----MDFLNLLN 172 (191)
Q Consensus 161 ~~~l-----ke~L~~lg 172 (191)
.++. .++|+.+.
T Consensus 209 ~~LnE~GkL~~lL~~~p 225 (281)
T KOG2824|consen 209 VRLNEEGKLGKLLKGIP 225 (281)
T ss_pred hhhhhcchHHHHHhcCC
Confidence 9874 46666655
No 32
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.05 E-value=5.8e-10 Score=75.94 Aligned_cols=58 Identities=21% Similarity=0.332 Sum_probs=48.8
Q ss_pred cEEEEEecCCCCCCChhHHHHHHHHHHc-----CCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEe
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFG 155 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak~iL~~~-----gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VG 155 (191)
+|++|++ +|||+|++++++|+++ ++++..+|++++++ +.+..|..++|++++||++++
T Consensus 2 ~v~~f~~-----~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~----l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVS-----PTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPD----LADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEEC-----CCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHh----HHHHcCCcccCEEEECCEEEE
Confidence 5789988 4999999999999986 68889999987765 444568889999999999875
No 33
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.97 E-value=5.1e-09 Score=73.75 Aligned_cols=72 Identities=17% Similarity=0.069 Sum_probs=61.6
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEE--CCEEEeechhhHHHHHH
Q 029558 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFFGGCDITVGKLMD 166 (191)
Q Consensus 90 VVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI--~G~~VGG~del~~~lke 166 (191)
+++|+. +.||+|.+++.+|+++|++|+.+++..++...+++.+.++..++|++.. +|..+.+.+.+.+++.+
T Consensus 2 ~~Ly~~-----~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~ 75 (77)
T cd03041 2 LELYEF-----EGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFK 75 (77)
T ss_pred ceEecC-----CCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHH
Confidence 578888 4999999999999999999999999876655677888888999999987 36788888888888765
No 34
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.94 E-value=8.7e-09 Score=71.91 Aligned_cols=72 Identities=26% Similarity=0.496 Sum_probs=59.2
Q ss_pred cEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEEC----CEEEeechhhHHHH
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIE----GEFFGGCDITVGKL 164 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~----G~~VGG~del~~~l 164 (191)
++.+|+. +.||+|++++.+|+++|++|+.++++.. .+.+++ ..+..++|+++++ |..+.....+.+++
T Consensus 1 ~i~Ly~~-----~~~p~c~kv~~~L~~~gi~y~~~~~~~~--~~~~~~-~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL 72 (77)
T cd03040 1 KITLYQY-----KTCPFCCKVRAFLDYHGIPYEVVEVNPV--SRKEIK-WSSYKKVPILRVESGGDGQQLVDSSVIISTL 72 (77)
T ss_pred CEEEEEc-----CCCHHHHHHHHHHHHCCCceEEEECCch--hHHHHH-HhCCCccCEEEECCCCCccEEEcHHHHHHHH
Confidence 5788988 4999999999999999999999988532 233443 4788999999987 78889999988888
Q ss_pred HHHH
Q 029558 165 MDFL 168 (191)
Q Consensus 165 ke~L 168 (191)
.+.|
T Consensus 73 ~~~~ 76 (77)
T cd03040 73 KTYL 76 (77)
T ss_pred HHHc
Confidence 7765
No 35
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.87 E-value=8.2e-09 Score=68.02 Aligned_cols=69 Identities=19% Similarity=0.122 Sum_probs=56.8
Q ss_pred EEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHH
Q 029558 91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKL 164 (191)
Q Consensus 91 VIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~l 164 (191)
.+|+. ++||+|.+++.+|+.+|++|+.++++.++....++++.++..++|.+..+|+.+++...+.+++
T Consensus 2 ~ly~~-----~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl 70 (71)
T cd00570 2 KLYYF-----PGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGLVLTESLAILEYL 70 (71)
T ss_pred EEEeC-----CCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHh
Confidence 46777 4999999999999999999999988754322225777889999999999999999888776654
No 36
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=98.82 E-value=1.9e-08 Score=75.77 Aligned_cols=77 Identities=22% Similarity=0.304 Sum_probs=55.0
Q ss_pred cEEEEEecCCCCCC-ChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCC---------CCcccEEEECCEEEeech
Q 029558 89 KVVLFMKGTKDFPQ-CGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSS---------WPTFPQLYIEGEFFGGCD 158 (191)
Q Consensus 89 kVVIYsk~~~~~p~-Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg---------~~tvP~IfI~G~~VGG~d 158 (191)
.|.||..++-+... =..++++..+|+.++|+|+.+||..+++.|+.+++..| .+-.||||+||+++|+++
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye 81 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYE 81 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHH
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHH
Confidence 46777765221100 13468999999999999999999999999999998763 455689999999999999
Q ss_pred hhHHHHH
Q 029558 159 ITVGKLM 165 (191)
Q Consensus 159 el~~~lk 165 (191)
++.++.+
T Consensus 82 ~f~ea~E 88 (99)
T PF04908_consen 82 DFEEANE 88 (99)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9998854
No 37
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.72 E-value=6e-08 Score=66.73 Aligned_cols=68 Identities=18% Similarity=0.206 Sum_probs=54.5
Q ss_pred EEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEEC-CEEEeechhhHHHHH
Q 029558 91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIE-GEFFGGCDITVGKLM 165 (191)
Q Consensus 91 VIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~-G~~VGG~del~~~lk 165 (191)
.+|.. ++||||++++.+|...|++|+.++++..+.. . ..+..+..++|+++.+ |..+++...+.+++.
T Consensus 2 ~Ly~~-----~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~-~-~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~ 70 (71)
T cd03037 2 KLYIY-----EHCPFCVKARMIAGLKNIPVEQIILQNDDEA-T-PIRMIGAKQVPILEKDDGSFMAESLDIVAFID 70 (71)
T ss_pred ceEec-----CCCcHhHHHHHHHHHcCCCeEEEECCCCchH-H-HHHhcCCCccCEEEeCCCeEeehHHHHHHHHh
Confidence 36666 4999999999999999999999988754322 2 2345678899999997 889999999888764
No 38
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.59 E-value=1.9e-07 Score=68.34 Aligned_cols=70 Identities=19% Similarity=0.280 Sum_probs=55.9
Q ss_pred HHHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHc-----CCCceEeecCCCHHHHHHHHhhCCCCcccEEEECC
Q 029558 77 LKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEG 151 (191)
Q Consensus 77 ~~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~-----gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G 151 (191)
+.+.++++.+.-+|.+|.. |+|++|..++++++++ ++.++.+|+++.++..+ ..|...+|.+++||
T Consensus 3 ~~~~~~~l~~pv~i~~F~~-----~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~----~~~V~~vPt~vidG 73 (89)
T cd03026 3 LLEQIRRLNGPINFETYVS-----LSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVE----ERGIMSVPAIFLNG 73 (89)
T ss_pred HHHHHHhcCCCEEEEEEEC-----CCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHH----HcCCccCCEEEECC
Confidence 4567777777778999988 5999999999998776 67888999877655433 44788999999999
Q ss_pred EEEe
Q 029558 152 EFFG 155 (191)
Q Consensus 152 ~~VG 155 (191)
+.++
T Consensus 74 ~~~~ 77 (89)
T cd03026 74 ELFG 77 (89)
T ss_pred EEEE
Confidence 8765
No 39
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.55 E-value=4.1e-07 Score=62.26 Aligned_cols=70 Identities=20% Similarity=0.271 Sum_probs=56.3
Q ss_pred EEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHHH
Q 029558 91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLMD 166 (191)
Q Consensus 91 VIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lke 166 (191)
++|+. +.||+|++++.+|++.|++|+.++++... ...++++.....++|++..+|..+.....+.+++.+
T Consensus 2 ~ly~~-----~~~~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 71 (73)
T cd03059 2 TLYSG-----PDDVYSHRVRIVLAEKGVSVEIIDVDPDN-PPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLDE 71 (73)
T ss_pred EEEEC-----CCChhHHHHHHHHHHcCCccEEEEcCCCC-CCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHh
Confidence 57877 49999999999999999999998886432 224566677888999998888888888877777654
No 40
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.54 E-value=6.9e-07 Score=63.99 Aligned_cols=53 Identities=30% Similarity=0.472 Sum_probs=42.4
Q ss_pred cEEEEEecCCCCCCChhHHHHHHHHHHcC----CCceEeecCCCHHHHHHHHhhCCCCcccEEEECC
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLN----APFETVNILENEMLRQGLKEYSSWPTFPQLYIEG 151 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak~iL~~~g----V~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G 151 (191)
+|++|++ |+|+.|..++++|.+.. +.++.+||++|+++ .+..+ ..+|++.++|
T Consensus 1 ~l~l~~k-----~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l----~~~Y~-~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTK-----PGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPEL----FEKYG-YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE------SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHH----HHHSC-TSTSEEEETT
T ss_pred CEEEEcC-----CCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHH----HHHhc-CCCCEEEEcC
Confidence 5899999 69999999999999764 55789999988774 33445 4899999999
No 41
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=98.53 E-value=2.5e-07 Score=81.42 Aligned_cols=73 Identities=27% Similarity=0.488 Sum_probs=64.3
Q ss_pred cEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHHHHH
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLMDFL 168 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lke~L 168 (191)
++++|... .||||-+|+.+|+-+|++|+.++|+ +-.|++++ ++.+..+|.+.++|+.+-....++..+...|
T Consensus 90 ~l~LyQye-----tCPFCcKVrAFLDyhgisY~VVEVn--pV~r~eIk-~SsykKVPil~~~Geqm~dSsvIIs~laTyL 161 (370)
T KOG3029|consen 90 DLVLYQYE-----TCPFCCKVRAFLDYHGISYAVVEVN--PVLRQEIK-WSSYKKVPILLIRGEQMVDSSVIISLLATYL 161 (370)
T ss_pred eEEEEeec-----cCchHHHHHHHHhhcCCceEEEEec--chhhhhcc-ccccccccEEEeccceechhHHHHHHHHHHh
Confidence 89999995 9999999999999999999999994 66777764 7789999999999999988888888887666
Q ss_pred h
Q 029558 169 N 169 (191)
Q Consensus 169 ~ 169 (191)
+
T Consensus 162 q 162 (370)
T KOG3029|consen 162 Q 162 (370)
T ss_pred c
Confidence 3
No 42
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.53 E-value=8.1e-07 Score=61.89 Aligned_cols=60 Identities=23% Similarity=0.458 Sum_probs=44.8
Q ss_pred cEEEEEecCCCCCCChhHHHHHHHHHHc----C--CCceEeecCCCHHHHHHHHhhCCCCcccEEEECCE-EEeec
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVVQILKSL----N--APFETVNILENEMLRQGLKEYSSWPTFPQLYIEGE-FFGGC 157 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak~iL~~~----g--V~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~-~VGG~ 157 (191)
+|++|+. +|||+|+.++..|+++ + +.+..+|++++++.. +..|..++|++++||+ .+.|.
T Consensus 2 ~v~~f~~-----~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~vPt~~~~g~~~~~G~ 68 (82)
T TIGR00411 2 KIELFTS-----PTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKA----MEYGIMAVPAIVINGDVEFIGA 68 (82)
T ss_pred EEEEEEC-----CCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHH----HHcCCccCCEEEECCEEEEecC
Confidence 5788988 5999999999998753 4 556777877666543 3358889999999997 34343
No 43
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.51 E-value=9e-08 Score=72.62 Aligned_cols=45 Identities=16% Similarity=0.398 Sum_probs=38.4
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhC
Q 029558 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYS 139 (191)
Q Consensus 90 VVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~s 139 (191)
|.||++ |+|++|++|+++|+++|++|+.+|+.+++..+++|.++.
T Consensus 1 i~iY~~-----~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~ 45 (111)
T cd03036 1 LKFYEY-----PKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWL 45 (111)
T ss_pred CEEEEC-----CCCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHH
Confidence 578998 699999999999999999999999988766666665544
No 44
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=98.49 E-value=4.9e-07 Score=63.16 Aligned_cols=67 Identities=21% Similarity=0.277 Sum_probs=58.1
Q ss_pred CCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHHHHH
Q 029558 101 PQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLMDFL 168 (191)
Q Consensus 101 p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lke~L 168 (191)
++||||++++-+|+.+|++|+.++++.... ...+.+..+..++|++..||..+.+...+.+++.+..
T Consensus 5 ~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~-~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~~~ 71 (75)
T PF13417_consen 5 PGSPYSQKVRLALEEKGIPYELVPVDPEEK-RPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEERY 71 (75)
T ss_dssp TTSHHHHHHHHHHHHHTEEEEEEEEBTTST-SHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHHHS
T ss_pred CCChHHHHHHHHHHHcCCeEEEeccCcccc-hhHHHhhcccccceEEEECCEEEeCHHHHHHHHHHHc
Confidence 499999999999999999999999875332 5667888899999999999999999999988887653
No 45
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=98.48 E-value=5.5e-07 Score=61.91 Aligned_cols=69 Identities=17% Similarity=0.142 Sum_probs=56.1
Q ss_pred EEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCC--CHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHH
Q 029558 91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKL 164 (191)
Q Consensus 91 VIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~--d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~l 164 (191)
.+|+. +.||+|++++.+|++.|++|+.++++. .+...+++++.+...++|.+..+|..+.....+.+++
T Consensus 2 ~Ly~~-----~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL 72 (74)
T cd03045 2 DLYYL-----PGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYL 72 (74)
T ss_pred EEEeC-----CCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHH
Confidence 57777 599999999999999999999988763 3344567778888889999999988777777666654
No 46
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=98.48 E-value=2.7e-07 Score=72.17 Aligned_cols=45 Identities=24% Similarity=0.433 Sum_probs=39.9
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhC
Q 029558 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYS 139 (191)
Q Consensus 90 VVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~s 139 (191)
|+||++ |+|++|++|+++|+++|++|+.+||.+++..+++|+++.
T Consensus 2 i~iY~~-----~~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~~l 46 (131)
T PRK01655 2 VTLFTS-----PSCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQIL 46 (131)
T ss_pred EEEEeC-----CCChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHHHH
Confidence 789999 699999999999999999999999998877777776654
No 47
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=98.46 E-value=8.2e-07 Score=61.20 Aligned_cols=67 Identities=13% Similarity=0.093 Sum_probs=52.9
Q ss_pred EEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEEC-CEEEeechhhHHH
Q 029558 91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIE-GEFFGGCDITVGK 163 (191)
Q Consensus 91 VIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~-G~~VGG~del~~~ 163 (191)
++|+. ++||+|.+++-+|+++|++|+.++++... ..+++++.+...++|++..+ |..+.....+.++
T Consensus 2 ~ly~~-----~~~p~~~rv~~~L~~~gl~~e~~~v~~~~-~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y 69 (71)
T cd03060 2 ILYSF-----RRCPYAMRARMALLLAGITVELREVELKN-KPAEMLAASPKGTVPVLVLGNGTVIEESLDIMRW 69 (71)
T ss_pred EEEec-----CCCcHHHHHHHHHHHcCCCcEEEEeCCCC-CCHHHHHHCCCCCCCEEEECCCcEEecHHHHHHh
Confidence 57777 49999999999999999999998886422 12456778889999999996 8877766665543
No 48
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=98.46 E-value=7.8e-07 Score=64.37 Aligned_cols=72 Identities=21% Similarity=0.253 Sum_probs=58.7
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEEC-CEEEeechhhHHHH
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIE-GEFFGGCDITVGKL 164 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~-G~~VGG~del~~~l 164 (191)
...+.+|+. +.||+|++++.+|.+.|++|+.++++... ..+++.+.++..++|++.++ |..+.....+.+++
T Consensus 16 ~~~~~Ly~~-----~~sp~~~kv~~~L~~~gl~~~~~~v~~~~-~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~yL 88 (89)
T cd03055 16 PGIIRLYSM-----RFCPYAQRARLVLAAKNIPHEVININLKD-KPDWFLEKNPQGKVPALEIDEGKVVYESLIICEYL 88 (89)
T ss_pred CCcEEEEeC-----CCCchHHHHHHHHHHcCCCCeEEEeCCCC-CcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHhh
Confidence 457899988 49999999999999999999999886432 22456778889999999998 78888877776654
No 49
>PHA02125 thioredoxin-like protein
Probab=98.45 E-value=7.2e-07 Score=62.67 Aligned_cols=55 Identities=18% Similarity=0.257 Sum_probs=38.8
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEE
Q 029558 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFF 154 (191)
Q Consensus 90 VVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~V 154 (191)
|++|+. +||++|+.++.+|++..+.+-.+|.+++. ++.+..+...+|++. +|+.+
T Consensus 2 iv~f~a-----~wC~~Ck~~~~~l~~~~~~~~~vd~~~~~----~l~~~~~v~~~PT~~-~g~~~ 56 (75)
T PHA02125 2 IYLFGA-----EWCANCKMVKPMLANVEYTYVDVDTDEGV----ELTAKHHIRSLPTLV-NTSTL 56 (75)
T ss_pred EEEEEC-----CCCHhHHHHHHHHHHHhheEEeeeCCCCH----HHHHHcCCceeCeEE-CCEEE
Confidence 678877 59999999999998765444444444444 345555788999987 77644
No 50
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=98.43 E-value=6.1e-07 Score=61.09 Aligned_cols=69 Identities=16% Similarity=0.097 Sum_probs=53.6
Q ss_pred EEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCC--CHHHHHHHHhhCCCCcccEEEE-CCEEEeechhhHHHH
Q 029558 91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYI-EGEFFGGCDITVGKL 164 (191)
Q Consensus 91 VIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~--d~~~r~~Lk~~sg~~tvP~IfI-~G~~VGG~del~~~l 164 (191)
.+|+. ++||+|++++.+|+++|++|+.++++. +.....++.+.+...++|.+.+ ||..+.....+.+++
T Consensus 2 ~Ly~~-----~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yL 73 (74)
T cd03051 2 KLYDS-----PTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYL 73 (74)
T ss_pred EEEeC-----CCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHh
Confidence 57777 589999999999999999999888763 2223456778888999999997 666777766665554
No 51
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.43 E-value=2.1e-06 Score=65.05 Aligned_cols=60 Identities=17% Similarity=0.259 Sum_probs=44.8
Q ss_pred HHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHcC-----CCceEeecCCCHHHHHHHHhhCCCCcccEEEE
Q 029558 82 DKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLN-----APFETVNILENEMLRQGLKEYSSWPTFPQLYI 149 (191)
Q Consensus 82 ~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~g-----V~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI 149 (191)
+++.+...+++|... +|||+|+.++.+|++.. +.+..+|++++++ +.+..+..++|.+++
T Consensus 17 ~~l~~~~~vvv~f~a----~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~----l~~~~~v~~vPt~~i 81 (113)
T cd02975 17 KEMKNPVDLVVFSSK----EGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKE----KAEKYGVERVPTTIF 81 (113)
T ss_pred HHhCCCeEEEEEeCC----CCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHH----HHHHcCCCcCCEEEE
Confidence 345556667777543 69999999999998764 4677788887765 444568889999988
No 52
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=98.43 E-value=1.9e-07 Score=69.63 Aligned_cols=47 Identities=19% Similarity=0.388 Sum_probs=39.1
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCC
Q 029558 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSW 141 (191)
Q Consensus 90 VVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~ 141 (191)
|+||++ |+|++|++++++|+++|++|+++||.+++..+++|+++.+.
T Consensus 1 i~iY~~-----~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~~ 47 (105)
T cd02977 1 ITIYGN-----PNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLAK 47 (105)
T ss_pred CEEEEC-----CCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHh
Confidence 578999 69999999999999999999999998866556666665543
No 53
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.42 E-value=1.2e-06 Score=59.63 Aligned_cols=69 Identities=20% Similarity=0.236 Sum_probs=55.3
Q ss_pred EEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCC--CHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHH
Q 029558 91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKL 164 (191)
Q Consensus 91 VIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~--d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~l 164 (191)
.+|.. +.||+|.+++-+|++.|++|+.++++. ++...+++.+.+...++|.+..+|..+.....+.+++
T Consensus 2 ~Ly~~-----~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~yl 72 (73)
T cd03056 2 KLYGF-----PLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVYL 72 (73)
T ss_pred EEEeC-----CCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHHh
Confidence 46766 599999999999999999999998863 3334466777778889999999998888777666543
No 54
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.41 E-value=1.9e-06 Score=60.95 Aligned_cols=68 Identities=13% Similarity=0.234 Sum_probs=47.4
Q ss_pred cEEEEEecCCCCCCChhHHHH----HHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEE-eechhhHHH
Q 029558 89 KVVLFMKGTKDFPQCGFSHTV----VQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFF-GGCDITVGK 163 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~ka----k~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~V-GG~del~~~ 163 (191)
+|.+|+. |||.|+.+ .+++++++++++.++|++.++ ..+ .|..++|.+++||+.+ .|.....+.
T Consensus 2 ~i~~~a~------~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~~----a~~-~~v~~vPti~i~G~~~~~G~~~~~~~ 70 (76)
T TIGR00412 2 KIQIYGT------GCANCQMTEKNVKKAVEELGIDAEFEKVTDMNE----ILE-AGVTATPGVAVDGELVIMGKIPSKEE 70 (76)
T ss_pred EEEEECC------CCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHHH----HHH-cCCCcCCEEEECCEEEEEeccCCHHH
Confidence 4667753 99999999 667788899999899874333 222 4889999999999654 454332244
Q ss_pred HHHH
Q 029558 164 LMDF 167 (191)
Q Consensus 164 lke~ 167 (191)
+++.
T Consensus 71 l~~~ 74 (76)
T TIGR00412 71 IKEI 74 (76)
T ss_pred HHHH
Confidence 4443
No 55
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.26 E-value=1.1e-05 Score=62.21 Aligned_cols=86 Identities=15% Similarity=0.221 Sum_probs=50.6
Q ss_pred HHHHHhhcCC-cEEEEEecCCCCCCChhHHHHHHHHHHc----CCCceEeecCCCH--------HHHHHHHhh---CCCC
Q 029558 79 STLDKVVTGN-KVVLFMKGTKDFPQCGFSHTVVQILKSL----NAPFETVNILENE--------MLRQGLKEY---SSWP 142 (191)
Q Consensus 79 ~~l~~~i~~~-kVVIYsk~~~~~p~Cp~C~kak~iL~~~----gV~y~~vdV~~d~--------~~r~~Lk~~---sg~~ 142 (191)
+.+++.++.+ .+++|... +|||+|+++...|++. ++++-.+|++.+. ++.+..+.+ ++..
T Consensus 14 ~~~~~~i~~~~~~iv~f~~----~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~ 89 (122)
T TIGR01295 14 VRALEALDKKETATFFIGR----KTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFM 89 (122)
T ss_pred HHHHHHHHcCCcEEEEEEC----CCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCC
Confidence 3455555544 44554443 6999999987777655 5778888887542 332322222 2345
Q ss_pred cccEEEE--CCEEEeec---hhhHHHHHHHH
Q 029558 143 TFPQLYI--EGEFFGGC---DITVGKLMDFL 168 (191)
Q Consensus 143 tvP~IfI--~G~~VGG~---del~~~lke~L 168 (191)
.+|++++ ||+.++.. ....+.+++++
T Consensus 90 ~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 90 GTPTFVHITDGKQVSVRCGSSTTAQELQDIA 120 (122)
T ss_pred CCCEEEEEeCCeEEEEEeCCCCCHHHHHHHh
Confidence 5898855 99776543 22345555544
No 56
>PRK12559 transcriptional regulator Spx; Provisional
Probab=98.22 E-value=1.8e-06 Score=67.73 Aligned_cols=45 Identities=24% Similarity=0.347 Sum_probs=38.3
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhC
Q 029558 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYS 139 (191)
Q Consensus 90 VVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~s 139 (191)
|+||+. |+|+.|++++++|+++|++|+.+|+.+++..+++|..+.
T Consensus 2 i~iY~~-----~~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~l 46 (131)
T PRK12559 2 VVLYTT-----ASCASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSIL 46 (131)
T ss_pred EEEEeC-----CCChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHHH
Confidence 789999 699999999999999999999999988765555555543
No 57
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=98.21 E-value=2.6e-06 Score=64.95 Aligned_cols=44 Identities=16% Similarity=0.325 Sum_probs=37.6
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhh
Q 029558 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEY 138 (191)
Q Consensus 90 VVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~ 138 (191)
|.+|+. |+|++|++|+++|+++|++|+.+|+.+++..+++|.++
T Consensus 1 i~iY~~-----~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l 44 (117)
T TIGR01617 1 IKVYGS-----PNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDI 44 (117)
T ss_pred CEEEeC-----CCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHH
Confidence 468988 59999999999999999999999998877666666544
No 58
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=98.19 E-value=3.2e-06 Score=64.35 Aligned_cols=43 Identities=28% Similarity=0.562 Sum_probs=35.7
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHh
Q 029558 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKE 137 (191)
Q Consensus 90 VVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~ 137 (191)
|.||+. |+|++|++|+++|+++|++|+.+|+.+++..+++|++
T Consensus 2 i~iY~~-----~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~ 44 (115)
T cd03032 2 IKLYTS-----PSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKE 44 (115)
T ss_pred EEEEeC-----CCCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHH
Confidence 679988 5999999999999999999999999876544444443
No 59
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=98.17 E-value=1.9e-06 Score=67.60 Aligned_cols=44 Identities=7% Similarity=0.227 Sum_probs=36.6
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhh
Q 029558 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEY 138 (191)
Q Consensus 90 VVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~ 138 (191)
|.||+. |+|+.|++|+++|+++|++|+.+|+.+++..+++|+++
T Consensus 2 i~iY~~-----~~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~~ 45 (132)
T PRK13344 2 IKIYTI-----SSCTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEILAI 45 (132)
T ss_pred EEEEeC-----CCCHHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHHHH
Confidence 689988 69999999999999999999999998765444444443
No 60
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=98.16 E-value=8.8e-06 Score=56.05 Aligned_cols=57 Identities=19% Similarity=0.141 Sum_probs=48.9
Q ss_pred CCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHH
Q 029558 101 PQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLM 165 (191)
Q Consensus 101 p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lk 165 (191)
..||+|.+++.+|+.+|++|+.++++... .+....+|.+..+|+.+.++..+.+++.
T Consensus 14 s~sp~~~~v~~~L~~~~i~~~~~~~~~~~--------~~p~g~vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 14 SLSPECLKVETYLRMAGIPYEVVFSSNPW--------RSPTGKLPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CCCHHHHHHHHHHHhCCCceEEEecCCcc--------cCCCcccCEEEECCEEEcCHHHHHHHHh
Confidence 37999999999999999999999986432 5567799999999999999988777765
No 61
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.12 E-value=1.2e-05 Score=75.19 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=60.0
Q ss_pred hhcChHHHHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHcC-----CCceEeecCCCHHHHHHHHhhCCCCccc
Q 029558 71 AALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLN-----APFETVNILENEMLRQGLKEYSSWPTFP 145 (191)
Q Consensus 71 ~~~~~~~~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~g-----V~y~~vdV~~d~~~r~~Lk~~sg~~tvP 145 (191)
..+++++.+.++++.++..|.+|.. |+||||.++++.+++.. |..+.+|..+.+++ .+..+..++|
T Consensus 101 ~~l~~~~~~~i~~~~~~~~i~~fv~-----~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~----~~~~~v~~VP 171 (517)
T PRK15317 101 PKLDQEVIEQIKALDGDFHFETYVS-----LSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDE----VEARNIMAVP 171 (517)
T ss_pred CCCCHHHHHHHHhcCCCeEEEEEEc-----CCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhH----HHhcCCcccC
Confidence 4778888999999988889999999 69999999999998774 44555665555554 3344777999
Q ss_pred EEEECCEEEe
Q 029558 146 QLYIEGEFFG 155 (191)
Q Consensus 146 ~IfI~G~~VG 155 (191)
.+|+||+.+.
T Consensus 172 ~~~i~~~~~~ 181 (517)
T PRK15317 172 TVFLNGEEFG 181 (517)
T ss_pred EEEECCcEEE
Confidence 9999998664
No 62
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.08 E-value=6.2e-06 Score=77.06 Aligned_cols=77 Identities=14% Similarity=0.178 Sum_probs=59.1
Q ss_pred hhcChHHHHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHcCC-----CceEeecCCCHHHHHHHHhhCCCCccc
Q 029558 71 AALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNA-----PFETVNILENEMLRQGLKEYSSWPTFP 145 (191)
Q Consensus 71 ~~~~~~~~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV-----~y~~vdV~~d~~~r~~Lk~~sg~~tvP 145 (191)
..+++++.+.++++-++..|.+|.. |.||||.++++.++++.+ ..+.+|..+.++ +.+..+..+||
T Consensus 102 ~~l~~~~~~~~~~~~~~~~i~~f~~-----~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~----~~~~~~v~~VP 172 (515)
T TIGR03140 102 PKLDEGIIDRIRRLNGPLHFETYVS-----LTCQNCPDVVQALNQMALLNPNISHTMIDGALFQD----EVEALGIQGVP 172 (515)
T ss_pred CCCCHHHHHHHHhcCCCeEEEEEEe-----CCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHH----HHHhcCCcccC
Confidence 4677888999999888889999999 699999999999988744 344444444444 33444777999
Q ss_pred EEEECCEEEee
Q 029558 146 QLYIEGEFFGG 156 (191)
Q Consensus 146 ~IfI~G~~VGG 156 (191)
.+|+||+.++.
T Consensus 173 ~~~i~~~~~~~ 183 (515)
T TIGR03140 173 AVFLNGEEFHN 183 (515)
T ss_pred EEEECCcEEEe
Confidence 99999987653
No 63
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=98.06 E-value=3.4e-05 Score=57.15 Aligned_cols=79 Identities=20% Similarity=0.278 Sum_probs=61.0
Q ss_pred cEEEEEecCCC---CCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHH
Q 029558 89 KVVLFMKGTKD---FPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLM 165 (191)
Q Consensus 89 kVVIYsk~~~~---~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lk 165 (191)
.+.+|.|.... ...||||++++-.|.+.|++|+.++|+.... -+.+.+++-...+|++..+|..+...+.+.+++.
T Consensus 5 ~~el~vka~~~~~~~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~-p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLd 83 (91)
T cd03061 5 EIELFVKASSDGESIGNCPFCQRLFMVLWLKGVVFNVTTVDMKRK-PEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLE 83 (91)
T ss_pred cEEEEEEeccCCCCCCCChhHHHHHHHHHHCCCceEEEEeCCCCC-CHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHH
Confidence 45666665433 2579999999999999999999988864211 1447777778899999999999998888888877
Q ss_pred HHH
Q 029558 166 DFL 168 (191)
Q Consensus 166 e~L 168 (191)
+..
T Consensus 84 e~~ 86 (91)
T cd03061 84 ETL 86 (91)
T ss_pred HHc
Confidence 654
No 64
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=98.06 E-value=2.7e-05 Score=53.79 Aligned_cols=70 Identities=19% Similarity=0.065 Sum_probs=54.0
Q ss_pred EEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCC-CCcccEEEECCEEEeechhhHHHHHH
Q 029558 91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSS-WPTFPQLYIEGEFFGGCDITVGKLMD 166 (191)
Q Consensus 91 VIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg-~~tvP~IfI~G~~VGG~del~~~lke 166 (191)
.+|+. +.||+|.+++-+|++.|++|+.++++.. ....+++++.. ..++|.+..+|..+.....+.+++.+
T Consensus 2 ~Ly~~-----~~sp~~~~v~~~l~~~gl~~~~~~~~~~-~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~ 72 (74)
T cd03058 2 KLLGA-----WASPFVLRVRIALALKGVPYEYVEEDLG-NKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDE 72 (74)
T ss_pred EEEEC-----CCCchHHHHHHHHHHcCCCCEEEEeCcc-cCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHh
Confidence 46766 4899999999999999999999887643 11233455555 47999999999888888887777654
No 65
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.05 E-value=2.6e-05 Score=54.99 Aligned_cols=63 Identities=27% Similarity=0.425 Sum_probs=40.5
Q ss_pred CCChhHHHHHHHH----HHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEE-eechhhHHHHHHHH
Q 029558 101 PQCGFSHTVVQIL----KSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFF-GGCDITVGKLMDFL 168 (191)
Q Consensus 101 p~Cp~C~kak~iL----~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~V-GG~del~~~lke~L 168 (191)
++||+|.++.+.+ .+++++++.+|+.+.++ + ...|..++|.++|||+.+ -|--...+.++++|
T Consensus 8 ~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~~~~~----~-~~ygv~~vPalvIng~~~~~G~~p~~~el~~~l 75 (76)
T PF13192_consen 8 PGCPYCPELVQLLKEAAEELGIEVEIIDIEDFEE----I-EKYGVMSVPALVINGKVVFVGRVPSKEELKELL 75 (76)
T ss_dssp SSCTTHHHHHHHHHHHHHHTTEEEEEEETTTHHH----H-HHTT-SSSSEEEETTEEEEESS--HHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHhcCCeEEEEEccCHHH----H-HHcCCCCCCEEEECCEEEEEecCCCHHHHHHHh
Confidence 3899999777755 55688888888833222 3 344899999999999853 34233334455544
No 66
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=98.04 E-value=3.4e-05 Score=53.22 Aligned_cols=71 Identities=13% Similarity=0.024 Sum_probs=57.3
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCC--HHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHH
Q 029558 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLM 165 (191)
Q Consensus 90 VVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d--~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lk 165 (191)
+.+|.. +.||+|.+++-+|.+.|++|+.++++.. +...+.+++.+....+|.+..+|..+.....+.+++.
T Consensus 2 ~~Ly~~-----~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~ 74 (76)
T cd03053 2 LKLYGA-----AMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLA 74 (76)
T ss_pred eEEEeC-----CCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHh
Confidence 567877 5899999999999999999999877642 2334567778889999999999988888877777664
No 67
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.03 E-value=2.2e-05 Score=74.15 Aligned_cols=75 Identities=16% Similarity=0.241 Sum_probs=59.7
Q ss_pred hhcChHHHHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHc-----CCCceEeecCCCHHHHHHHHhhCCCCccc
Q 029558 71 AALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFP 145 (191)
Q Consensus 71 ~~~~~~~~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~-----gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP 145 (191)
..+++++.+.++++-+..+|.+|.. |+||+|.++.+.+++. +|..+.+|+.+.+++ .+..+..++|
T Consensus 461 ~~l~~~~~~~i~~~~~~~~i~v~~~-----~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~----~~~~~v~~vP 531 (555)
T TIGR03143 461 QPLGEELLEKIKKITKPVNIKIGVS-----LSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDL----KDEYGIMSVP 531 (555)
T ss_pred CCCCHHHHHHHHhcCCCeEEEEEEC-----CCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHH----HHhCCceecC
Confidence 4677888889988888888999877 5999999988876554 688888998776654 3344788999
Q ss_pred EEEECCEEE
Q 029558 146 QLYIEGEFF 154 (191)
Q Consensus 146 ~IfI~G~~V 154 (191)
.++|||+.+
T Consensus 532 ~~~i~~~~~ 540 (555)
T TIGR03143 532 AIVVDDQQV 540 (555)
T ss_pred EEEECCEEE
Confidence 999999643
No 68
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.02 E-value=3e-05 Score=64.63 Aligned_cols=78 Identities=19% Similarity=0.307 Sum_probs=56.1
Q ss_pred hcChHHHHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHc-----CCCceEeecCCCHHHHHHHHhhCCCCcccE
Q 029558 72 ALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQ 146 (191)
Q Consensus 72 ~~~~~~~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~-----gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~ 146 (191)
.++++..+.+++.-+.-.|++|+. +|||+|+.++.+++++ .+.+..+|++.++++.. ..|..++|+
T Consensus 119 ~L~~~~~~~l~~~~~pv~I~~F~a-----~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~----~~~V~~vPt 189 (215)
T TIGR02187 119 GLSEKTVELLQSLDEPVRIEVFVT-----PTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAE----KYGVMSVPK 189 (215)
T ss_pred CCCHHHHHHHHhcCCCcEEEEEEC-----CCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHH----HhCCccCCE
Confidence 455667777777655667777887 5999999999999876 35566778777766443 457889999
Q ss_pred EEECC--E-EEeech
Q 029558 147 LYIEG--E-FFGGCD 158 (191)
Q Consensus 147 IfI~G--~-~VGG~d 158 (191)
+++++ + ++|...
T Consensus 190 l~i~~~~~~~~G~~~ 204 (215)
T TIGR02187 190 IVINKGVEEFVGAYP 204 (215)
T ss_pred EEEecCCEEEECCCC
Confidence 99965 3 445444
No 69
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=98.00 E-value=6.8e-06 Score=62.00 Aligned_cols=43 Identities=9% Similarity=0.186 Sum_probs=35.0
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHh
Q 029558 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKE 137 (191)
Q Consensus 90 VVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~ 137 (191)
|+||+. |+|+.|++++++|+++|++|+.+|+.+++-..++|.+
T Consensus 1 i~iy~~-----~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~ 43 (105)
T cd03035 1 ITLYGI-----KNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLER 43 (105)
T ss_pred CEEEeC-----CCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHH
Confidence 478888 6999999999999999999999999876433334333
No 70
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=97.97 E-value=0.0001 Score=53.56 Aligned_cols=60 Identities=18% Similarity=0.345 Sum_probs=41.8
Q ss_pred CcEEEEEecCCCCCCChhHHHHHHHHHH------cCCCceEeecCCCHHHHHHHHhhCCCCcccEEEE--CCEEEe
Q 029558 88 NKVVLFMKGTKDFPQCGFSHTVVQILKS------LNAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFFG 155 (191)
Q Consensus 88 ~kVVIYsk~~~~~p~Cp~C~kak~iL~~------~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI--~G~~VG 155 (191)
..++++..+ +||+.|+.+...|++ .++.+..+|+++++++.+ ..+...+|.+++ +|+.++
T Consensus 14 ~~vlv~f~a----~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~----~~~v~~vPt~~i~~~g~~v~ 81 (97)
T cd02949 14 RLILVLYTS----PTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAE----AAGIMGTPTVQFFKDKELVK 81 (97)
T ss_pred CeEEEEEEC----CCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHH----HCCCeeccEEEEEECCeEEE
Confidence 344544444 699999999998877 346677888877766543 346678898766 887653
No 71
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=97.94 E-value=3.4e-05 Score=53.98 Aligned_cols=69 Identities=14% Similarity=0.044 Sum_probs=55.2
Q ss_pred EEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCC--HHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHH
Q 029558 91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKL 164 (191)
Q Consensus 91 VIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d--~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~l 164 (191)
++|.. +.|++|++++-.|+++|++|+.++++.. +....++.+++...++|.+..||..+.....+.+++
T Consensus 2 ~ly~~-----~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yL 72 (73)
T cd03052 2 VLYHW-----TQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYL 72 (73)
T ss_pred EEecC-----CCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHh
Confidence 56766 4899999999999999999999887542 223456788889999999999998888777766654
No 72
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=97.93 E-value=3.7e-05 Score=60.08 Aligned_cols=77 Identities=22% Similarity=0.351 Sum_probs=54.8
Q ss_pred cEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCC----HHHHHHHHhh--------------------------
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN----EMLRQGLKEY-------------------------- 138 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d----~~~r~~Lk~~-------------------------- 138 (191)
.++||+. |.|.-|++++++|+++|++|+.+|+.++ ++++..+...
T Consensus 2 ~i~iY~~-----p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l~~~g~~~lin~~~~~~r~l~~~~~~ls~~ 76 (126)
T TIGR01616 2 TIIFYEK-----PGCANNARQKAALKASGHDVEVQDILKEPWHADTLRPYFGNKPVGSWFNRAAPRVKSGEVNPDSIDEA 76 (126)
T ss_pred eEEEEeC-----CCCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHHHHcCHHHHHhccchHhhhCCCCcccCCHH
Confidence 4678988 7999999999999999999999998653 2333333221
Q ss_pred ------CCCCc---ccEEEECCEEEeechhhHHHHHHHHhhcC
Q 029558 139 ------SSWPT---FPQLYIEGEFFGGCDITVGKLMDFLNLLN 172 (191)
Q Consensus 139 ------sg~~t---vP~IfI~G~~VGG~del~~~lke~L~~lg 172 (191)
...+. -|.|..+|+.+-|+++ +.++++|...+
T Consensus 77 e~i~lm~~~P~LIKRPIi~~~~~~~iGf~~--e~~~~~l~~~~ 117 (126)
T TIGR01616 77 SALALMVSDPLLIRRPLMDLGGIRCAGFDR--EPVLSWIGLQT 117 (126)
T ss_pred HHHHHHHhCcCeEeCCEEEECCEEEEcCCH--HHHHHHhCCCC
Confidence 01111 3888888888889998 66666655433
No 73
>PHA02278 thioredoxin-like protein
Probab=97.92 E-value=8.8e-05 Score=55.70 Aligned_cols=66 Identities=15% Similarity=0.318 Sum_probs=44.7
Q ss_pred cCCcEEEEEecCCCCCCChhHHHHHHHHHHc------CCCceEeecCCCHHHHHHHHhhCCCCcccEEE--ECCEEEe
Q 029558 86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLY--IEGEFFG 155 (191)
Q Consensus 86 ~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~------gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~If--I~G~~VG 155 (191)
+...++|+... |||+.|+.+...|++. .+++..+|++.++.....+.+..+-.++|++. -||+.++
T Consensus 13 ~~~~vvV~F~A----~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v~ 86 (103)
T PHA02278 13 QKKDVIVMITQ----DNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLVK 86 (103)
T ss_pred CCCcEEEEEEC----CCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEEE
Confidence 46677777776 7999999998877665 24577788886532233355555667777764 4888653
No 74
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=97.91 E-value=1.5e-05 Score=61.06 Aligned_cols=36 Identities=17% Similarity=0.418 Sum_probs=32.3
Q ss_pred cEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCH
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENE 129 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~ 129 (191)
.|+||+. |.|+.|++|+++|+++|++|+.+|+.+++
T Consensus 1 ~i~iy~~-----p~C~~crkA~~~L~~~gi~~~~~d~~~~p 36 (113)
T cd03033 1 DIIFYEK-----PGCANNARQKALLEAAGHEVEVRDLLTEP 36 (113)
T ss_pred CEEEEEC-----CCCHHHHHHHHHHHHcCCCcEEeehhcCC
Confidence 3789988 69999999999999999999999997643
No 75
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=97.88 E-value=0.00026 Score=52.29 Aligned_cols=63 Identities=25% Similarity=0.233 Sum_probs=42.1
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHc-----CCCceEeecCCCHHHHHHHHhhCCCCcccEEEE--CCEEE
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFF 154 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~-----gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI--~G~~V 154 (191)
...|+|+... +||+.|+.....|+++ ++.+-.+|++++++.. .+.+..+...+|++++ ||+.+
T Consensus 15 ~k~vvv~F~a----~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~-~l~~~~~V~~~Pt~~~~~~G~~v 84 (103)
T cd02985 15 GRLVVLEFAL----KHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTM-ELCRREKIIEVPHFLFYKDGEKI 84 (103)
T ss_pred CCEEEEEEEC----CCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHH-HHHHHcCCCcCCEEEEEeCCeEE
Confidence 3455555554 6999999998888764 4556777877765433 3444457778886644 88754
No 76
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=97.87 E-value=0.00013 Score=50.81 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=49.1
Q ss_pred CChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHHH
Q 029558 102 QCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLMD 166 (191)
Q Consensus 102 ~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lke 166 (191)
.||+|.+++.+|+..|++|+.++++. ++.+...++|.+..||+.+.+...+.+++.+
T Consensus 16 ~sp~~~~v~~~L~~~gi~~~~~~~~~--------~~~~p~g~vPvl~~~g~~l~eS~~I~~yL~~ 72 (75)
T cd03080 16 LSPFCLKVETFLRMAGIPYENKFGGL--------AKRSPKGKLPFIELNGEKIADSELIIDHLEE 72 (75)
T ss_pred CCHHHHHHHHHHHHCCCCcEEeecCc--------ccCCCCCCCCEEEECCEEEcCHHHHHHHHHH
Confidence 58999999999999999999888753 2566788999999999999998888887765
No 77
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=8.5e-05 Score=59.85 Aligned_cols=70 Identities=21% Similarity=0.281 Sum_probs=47.8
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHHcC------CCceEeecCCCHHHHHHHHhhCCCCcccEEEE--CCEE----Eeec
Q 029558 90 VVLFMKGTKDFPQCGFSHTVVQILKSLN------APFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEF----FGGC 157 (191)
Q Consensus 90 VVIYsk~~~~~p~Cp~C~kak~iL~~~g------V~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI--~G~~----VGG~ 157 (191)
+|-|.. +||+.|+....+|+++- +.+-.+|+|++.++.+ .++...+|++++ ||+. +|..
T Consensus 65 lVdF~A-----~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~----~Y~I~avPtvlvfknGe~~d~~vG~~ 135 (150)
T KOG0910|consen 65 LVDFHA-----EWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAE----DYEISAVPTVLVFKNGEKVDRFVGAV 135 (150)
T ss_pred EEEEec-----CcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHh----hcceeeeeEEEEEECCEEeeeecccC
Confidence 455666 59999999999998873 4466778888777543 446779998855 8864 4655
Q ss_pred hhhHHHHHHHHhh
Q 029558 158 DITVGKLMDFLNL 170 (191)
Q Consensus 158 del~~~lke~L~~ 170 (191)
+. +.+.+.+++
T Consensus 136 ~~--~~l~~~i~k 146 (150)
T KOG0910|consen 136 PK--EQLRSLIKK 146 (150)
T ss_pred CH--HHHHHHHHH
Confidence 55 444444433
No 78
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=97.85 E-value=0.00014 Score=50.41 Aligned_cols=70 Identities=14% Similarity=0.106 Sum_probs=56.1
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHH
Q 029558 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLM 165 (191)
Q Consensus 90 VVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lk 165 (191)
+.+|.. +.|+.|++++-+|.+.|++|+.+.++. +...++++..+...++|.+..||..+.....+..++.
T Consensus 2 ~~Ly~~-----~~~~~~~~v~~~L~~~~i~~e~~~v~~-~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 71 (73)
T cd03076 2 YTLTYF-----PVRGRAEAIRLLLADQGISWEEERVTY-EEWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLG 71 (73)
T ss_pred cEEEEe-----CCcchHHHHHHHHHHcCCCCEEEEecH-HHhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHh
Confidence 466766 379999999999999999999998864 2334457777778899999999998888887776653
No 79
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=97.85 E-value=6.5e-05 Score=56.83 Aligned_cols=67 Identities=12% Similarity=0.182 Sum_probs=40.4
Q ss_pred HHHHHhhcCC--cEEEEEecCCCCCCChhHHHHHHHHH-------H--cCCCceEeecCCCHHH---------HHHHHhh
Q 029558 79 STLDKVVTGN--KVVLFMKGTKDFPQCGFSHTVVQILK-------S--LNAPFETVNILENEML---------RQGLKEY 138 (191)
Q Consensus 79 ~~l~~~i~~~--kVVIYsk~~~~~p~Cp~C~kak~iL~-------~--~gV~y~~vdV~~d~~~---------r~~Lk~~ 138 (191)
+.++++.+++ +|+|+..+ +||++|++....+. . .++.+..+|++++.+. ...+...
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a----~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~ 79 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQ----PGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARK 79 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeC----CCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHH
Confidence 4455555666 45555554 69999998876442 1 1344556677654211 2445556
Q ss_pred CCCCcccEEEE
Q 029558 139 SSWPTFPQLYI 149 (191)
Q Consensus 139 sg~~tvP~IfI 149 (191)
.+...+|++++
T Consensus 80 ~~v~~~Pt~~~ 90 (125)
T cd02951 80 YRVRFTPTVIF 90 (125)
T ss_pred cCCccccEEEE
Confidence 67889999655
No 80
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=97.84 E-value=5.5e-05 Score=55.33 Aligned_cols=66 Identities=12% Similarity=0.111 Sum_probs=41.6
Q ss_pred HHHHhhcCCc-EEEEEecCCCCCCChhHHHHHHHH------HH-c--CCCceEeecCCCHHHHHHHHhhCCCCcccEEEE
Q 029558 80 TLDKVVTGNK-VVLFMKGTKDFPQCGFSHTVVQIL------KS-L--NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI 149 (191)
Q Consensus 80 ~l~~~i~~~k-VVIYsk~~~~~p~Cp~C~kak~iL------~~-~--gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI 149 (191)
.+++++.+++ ++|+..+ +||++|++....+ .+ + ++.+-.+|++++.+....+.+..+..++|++++
T Consensus 3 ~~~~~~~~~k~vlv~f~a----~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 3 ALAQALAQGKPVFVDFTA----DWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred HHHHHHHcCCeEEEEEEc----chhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 3455555554 4444444 6999999887544 11 1 455666777765444455666668889998755
No 81
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=97.84 E-value=0.00013 Score=50.10 Aligned_cols=69 Identities=20% Similarity=0.209 Sum_probs=53.9
Q ss_pred EEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHH
Q 029558 91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKL 164 (191)
Q Consensus 91 VIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~l 164 (191)
++|.. +.|+.|++++-+|++.|++|+.++++........+...+...++|.+..+|..+.....+.+++
T Consensus 2 ~Ly~~-----~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL 70 (72)
T cd03039 2 KLTYF-----NIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYL 70 (72)
T ss_pred EEEEE-----cCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEEECCEEEEecHHHHHHh
Confidence 45655 4899999999999999999999988643222233666778899999999998888877766654
No 82
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=97.81 E-value=8.1e-05 Score=52.76 Aligned_cols=65 Identities=15% Similarity=0.065 Sum_probs=52.0
Q ss_pred CCChhHHHHHHHHHHcCCCceEeecCC--CHHHHHHHHhhCCCCcccEEEEC-CEEEeechhhHHHHHH
Q 029558 101 PQCGFSHTVVQILKSLNAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYIE-GEFFGGCDITVGKLMD 166 (191)
Q Consensus 101 p~Cp~C~kak~iL~~~gV~y~~vdV~~--d~~~r~~Lk~~sg~~tvP~IfI~-G~~VGG~del~~~lke 166 (191)
++||+|.+++-+|...|++|+.++++. .+....++ +......+|.+..+ |..+.+...+.+++.+
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~~ 81 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLEE 81 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHHH
Confidence 589999999999999999999887753 22333444 56778899999988 8889888888887764
No 83
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=97.79 E-value=3e-05 Score=59.90 Aligned_cols=45 Identities=16% Similarity=0.369 Sum_probs=37.5
Q ss_pred cEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhh
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEY 138 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~ 138 (191)
.|.||.. |.|.-|++|+++|+++||+|+.+|+.+++-.+++|+++
T Consensus 2 ~itiy~~-----p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~ 46 (117)
T COG1393 2 MITIYGN-----PNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKI 46 (117)
T ss_pred eEEEEeC-----CCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHH
Confidence 4789988 79999999999999999999999998765545555444
No 84
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=97.77 E-value=9.2e-05 Score=50.33 Aligned_cols=69 Identities=19% Similarity=0.168 Sum_probs=53.0
Q ss_pred EEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCC--CHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHH
Q 029558 91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKL 164 (191)
Q Consensus 91 VIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~--d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~l 164 (191)
.+|.. +.|++|.+++.+|.++|++|+.++++. +.....++++.+...++|++..+|..+.....+..++
T Consensus 2 ~L~~~-----~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL 72 (73)
T cd03042 2 ILYSY-----FRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYL 72 (73)
T ss_pred EEecC-----CCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHh
Confidence 45655 478999999999999999999987753 2223355677888899999999998887776665554
No 85
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=97.77 E-value=0.00016 Score=50.72 Aligned_cols=72 Identities=13% Similarity=0.099 Sum_probs=56.6
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecC--CCHHHHHHHHhhCCCCcccEEEEC---CEEEeechhhHHHH
Q 029558 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNIL--ENEMLRQGLKEYSSWPTFPQLYIE---GEFFGGCDITVGKL 164 (191)
Q Consensus 90 VVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~--~d~~~r~~Lk~~sg~~tvP~IfI~---G~~VGG~del~~~l 164 (191)
+.+|.. +. |+|.+++-+|++.|++|+.+.++ ......+++.+.+...++|.+..+ |..+.....+.+++
T Consensus 2 ~~Ly~~-----~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL 75 (81)
T cd03048 2 ITLYTH-----GT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYL 75 (81)
T ss_pred eEEEeC-----CC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHH
Confidence 568876 35 99999999999999999988775 233344567778888999999887 78888888877777
Q ss_pred HHH
Q 029558 165 MDF 167 (191)
Q Consensus 165 ke~ 167 (191)
.+.
T Consensus 76 ~~~ 78 (81)
T cd03048 76 AEK 78 (81)
T ss_pred HHH
Confidence 643
No 86
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=97.76 E-value=0.00038 Score=49.59 Aligned_cols=60 Identities=25% Similarity=0.380 Sum_probs=41.6
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHc------CCCceEeecCCCHHHHHHHHhhCCCCcccEEEE--CCEEE
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFF 154 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~------gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI--~G~~V 154 (191)
...++|+... +||+.|+.....|.+. ++.+-.+|.+++.++ .+..+...+|++++ +|+.+
T Consensus 17 ~~~vvv~f~~----~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l----~~~~~v~~~Pt~~~~~~g~~~ 84 (103)
T PF00085_consen 17 DKPVVVYFYA----PWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKEL----CKKYGVKSVPTIIFFKNGKEV 84 (103)
T ss_dssp SSEEEEEEES----TTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHH----HHHTTCSSSSEEEEEETTEEE
T ss_pred CCCEEEEEeC----CCCCccccccceecccccccccccccchhhhhccchh----hhccCCCCCCEEEEEECCcEE
Confidence 4566666555 7999999999888665 355667777766554 34446778888855 77654
No 87
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.75 E-value=0.00037 Score=47.64 Aligned_cols=59 Identities=22% Similarity=0.379 Sum_probs=42.4
Q ss_pred CcEEEEEecCCCCCCChhHHHHHHHHHH-----cCCCceEeecCCCHHHHHHHHhhCCCCcccEEEE--CCEEE
Q 029558 88 NKVVLFMKGTKDFPQCGFSHTVVQILKS-----LNAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFF 154 (191)
Q Consensus 88 ~kVVIYsk~~~~~p~Cp~C~kak~iL~~-----~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI--~G~~V 154 (191)
..++++..+ +||++|+++.+.|++ .++.+..+|++.+.++.+.+ +...+|++++ +|+.+
T Consensus 11 ~~~ll~~~~----~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~v~~~P~~~~~~~g~~~ 76 (93)
T cd02947 11 KPVVVDFWA----PWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEY----GVRSIPTFLFFKNGKEV 76 (93)
T ss_pred CcEEEEEEC----CCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhc----CcccccEEEEEECCEEE
Confidence 444444443 699999999999988 67788888888766654443 6678898766 78643
No 88
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00011 Score=53.03 Aligned_cols=62 Identities=26% Similarity=0.363 Sum_probs=46.4
Q ss_pred EEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCC-HHHHHHHHhh-----------CCCCcccEEEE-CCEEEeec
Q 029558 91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN-EMLRQGLKEY-----------SSWPTFPQLYI-EGEFFGGC 157 (191)
Q Consensus 91 VIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d-~~~r~~Lk~~-----------sg~~tvP~IfI-~G~~VGG~ 157 (191)
++|... .||.|..+++.|+.++++|+++||.++ +.+++.|+-+ .|+-.+|.+.. ||+.|-|-
T Consensus 5 ~lfgsn-----~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~~ 79 (85)
T COG4545 5 KLFGSN-----LCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLGD 79 (85)
T ss_pred eeeccc-----cCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEec
Confidence 556553 899999999999999999999999764 4555555432 26777899877 45666553
No 89
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.75 E-value=9e-05 Score=50.89 Aligned_cols=68 Identities=18% Similarity=0.185 Sum_probs=51.4
Q ss_pred EEEEecCCCCCCChhHHHHHHHHHH--cCCCceEeecCCCHHHHHHHHhhCCCCcccEEEE-CCEEEeechhhHHHH
Q 029558 91 VLFMKGTKDFPQCGFSHTVVQILKS--LNAPFETVNILENEMLRQGLKEYSSWPTFPQLYI-EGEFFGGCDITVGKL 164 (191)
Q Consensus 91 VIYsk~~~~~p~Cp~C~kak~iL~~--~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI-~G~~VGG~del~~~l 164 (191)
.+|.. +.||+|.+++-+|.. .|++|+.++++.. ....++.+.....++|.+.. ||..+.....+.+++
T Consensus 2 ~Ly~~-----~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yL 72 (73)
T cd03049 2 KLLYS-----PTSPYVRKVRVAAHETGLGDDVELVLVNPW-SDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYL 72 (73)
T ss_pred EEecC-----CCCcHHHHHHHHHHHhCCCCCcEEEEcCcc-cCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhh
Confidence 45655 589999999999999 8999999988642 11234556778889999985 777777777766554
No 90
>PRK10387 glutaredoxin 2; Provisional
Probab=97.74 E-value=0.00012 Score=59.49 Aligned_cols=70 Identities=16% Similarity=0.216 Sum_probs=54.6
Q ss_pred EEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEE-EECCEEEeechhhHHHHHHH
Q 029558 91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQL-YIEGEFFGGCDITVGKLMDF 167 (191)
Q Consensus 91 VIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~I-fI~G~~VGG~del~~~lke~ 167 (191)
.+|+. +.||+|.+++-+|++.|++|+.++++..+.. .. .+..+..++|++ ..||..+.....+..++.+.
T Consensus 2 ~Ly~~-----~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~-~~-~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~ 72 (210)
T PRK10387 2 KLYIY-----DHCPFCVKARMIFGLKNIPVELIVLANDDEA-TP-IRMIGQKQVPILQKDDGSYMPESLDIVHYIDEL 72 (210)
T ss_pred EEEeC-----CCCchHHHHHHHHHHcCCCeEEEEcCCCchh-hH-HHhcCCcccceEEecCCeEecCHHHHHHHHHHh
Confidence 57776 3899999999999999999999988643322 22 346677899999 46788889988888887654
No 91
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.74 E-value=2.4e-05 Score=61.17 Aligned_cols=93 Identities=15% Similarity=0.230 Sum_probs=52.2
Q ss_pred hcChHHHHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHc-----CCCceEeecCCCHHHHHHHHhhCCCCcccE
Q 029558 72 ALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQ 146 (191)
Q Consensus 72 ~~~~~~~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~-----gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~ 146 (191)
.++++..+.++...+...+++++.. |||+|...+.+|.+. +++...+..+++.++.+.+.. .|...+|.
T Consensus 27 ~l~~~~~~~l~~~~~~~~ilvi~e~-----WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt-~g~~~IP~ 100 (129)
T PF14595_consen 27 QLSEEQIEKLKSIQKPYNILVITET-----WCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLT-NGGRSIPT 100 (129)
T ss_dssp H--HHHHHHHHT--S-EEEEEE--T-----T-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT--SS--SSE
T ss_pred CCCHHHHHHHHhcCCCcEEEEEECC-----CchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHh-CCCeecCE
Confidence 5778888899999888899999995 999999887777554 566666666666665554444 57899999
Q ss_pred EEE---CCEEEeechhhHHHHHHHHhh
Q 029558 147 LYI---EGEFFGGCDITVGKLMDFLNL 170 (191)
Q Consensus 147 IfI---~G~~VGG~del~~~lke~L~~ 170 (191)
+++ +|+.+|-+-+--+..++++++
T Consensus 101 ~I~~d~~~~~lg~wgerP~~~~~~~~~ 127 (129)
T PF14595_consen 101 FIFLDKDGKELGRWGERPKEVQELVDE 127 (129)
T ss_dssp EEEE-TT--EEEEEESS-HHHH-----
T ss_pred EEEEcCCCCEeEEEcCCCHHHhhcccc
Confidence 977 467666544444445544443
No 92
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=97.74 E-value=0.00011 Score=60.86 Aligned_cols=65 Identities=17% Similarity=0.142 Sum_probs=52.4
Q ss_pred CCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEE-ECCEEEeechhhHHHHHHH
Q 029558 101 PQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLY-IEGEFFGGCDITVGKLMDF 167 (191)
Q Consensus 101 p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~If-I~G~~VGG~del~~~lke~ 167 (191)
+.||+|.+++-+|+.+|++|+.+++..++.. . ..+..+..++|++. .||..+.+...+.+++.+.
T Consensus 6 ~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~-~-~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~~ 71 (209)
T TIGR02182 6 DHCPFCVRARMIFGLKNIPVEKHVLLNDDEE-T-PIRMIGAKQVPILQKDDGRAMPESLDIVAYFDKL 71 (209)
T ss_pred CCCChHHHHHHHHHHcCCCeEEEECCCCcch-h-HHHhcCCCCcceEEeeCCeEeccHHHHHHHHHHh
Confidence 4899999999999999999999888654321 2 24566778999997 7888999999988888754
No 93
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=97.73 E-value=0.00032 Score=50.75 Aligned_cols=64 Identities=16% Similarity=0.277 Sum_probs=42.3
Q ss_pred HHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHc-------CCCceEeecCCCHHHHHHHHhhCCCCcccEEEE--C
Q 029558 80 TLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--E 150 (191)
Q Consensus 80 ~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~-------gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI--~ 150 (191)
.++++++...++.|.. |||++|++....+++. ++.+-.+|.++++++.+ ..+..++|++++ +
T Consensus 10 ~f~~~~~~~~lv~f~a-----~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~----~~~i~~~Pt~~~~~~ 80 (101)
T cd02994 10 NWTLVLEGEWMIEFYA-----PWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSG----RFFVTALPTIYHAKD 80 (101)
T ss_pred hHHHHhCCCEEEEEEC-----CCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHH----HcCCcccCEEEEeCC
Confidence 3444555555666655 6999999988887655 34556677777665433 335677887765 6
Q ss_pred CE
Q 029558 151 GE 152 (191)
Q Consensus 151 G~ 152 (191)
|+
T Consensus 81 g~ 82 (101)
T cd02994 81 GV 82 (101)
T ss_pred CC
Confidence 65
No 94
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=97.71 E-value=0.00042 Score=49.11 Aligned_cols=58 Identities=24% Similarity=0.391 Sum_probs=40.4
Q ss_pred cEEEEEecCCCCCCChhHHHHHHHHHHc------CCCceEeecCCCHHHHHHHHhhCCCCcccEEEE--CCEEE
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFF 154 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak~iL~~~------gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI--~G~~V 154 (191)
.+++|... +||++|+.+...|++. ++.+-.+|.+.++++.+ ..+...+|.+++ +|+.+
T Consensus 16 ~vvi~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~----~~~v~~~P~~~~~~~g~~~ 81 (101)
T TIGR01068 16 PVLVDFWA----PWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAA----KYGIRSIPTLLLFKNGKEV 81 (101)
T ss_pred cEEEEEEC----CCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHH----HcCCCcCCEEEEEeCCcEe
Confidence 56665555 6999999988777664 25667777777665433 347789998876 77644
No 95
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.69 E-value=0.00048 Score=51.56 Aligned_cols=76 Identities=14% Similarity=0.138 Sum_probs=46.7
Q ss_pred cCCcEEEEEecCCCCCCChhHHHHHHHHHHc-------CCCceEeecCCCHHHHHHHHhhCCCCcccEEE--ECCEEEe-
Q 029558 86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILENEMLRQGLKEYSSWPTFPQLY--IEGEFFG- 155 (191)
Q Consensus 86 ~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~-------gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~If--I~G~~VG- 155 (191)
...+++|+..+ |||+.|+.....+.+. ++.+-.+|++.++++. ...|..++|+++ .+|+.++
T Consensus 23 ~~~~vlV~F~a----~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~----~~~~V~~~Pt~~i~~~g~~~~~ 94 (111)
T cd02963 23 FKKPYLIKITS----DWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLA----RKLGAHSVPAIVGIINGQVTFY 94 (111)
T ss_pred CCCeEEEEEEC----CccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHH----HHcCCccCCEEEEEECCEEEEE
Confidence 34556666665 7999998777665433 4666777777665543 334677888775 4887553
Q ss_pred --echhhHHHHHHHHhh
Q 029558 156 --GCDITVGKLMDFLNL 170 (191)
Q Consensus 156 --G~del~~~lke~L~~ 170 (191)
|... .+.+.+.+++
T Consensus 95 ~~G~~~-~~~l~~~i~~ 110 (111)
T cd02963 95 HDSSFT-KQHVVDFVRK 110 (111)
T ss_pred ecCCCC-HHHHHHHHhc
Confidence 3221 2445565554
No 96
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=97.67 E-value=0.00026 Score=54.54 Aligned_cols=60 Identities=13% Similarity=0.077 Sum_probs=41.7
Q ss_pred CcEEEEEecCCCCCCChhHHHHHHHHHHcC------CCceEeecCCCHHHHHHHHhhCCCCcccEEEE--CCEEEe
Q 029558 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLN------APFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFFG 155 (191)
Q Consensus 88 ~kVVIYsk~~~~~p~Cp~C~kak~iL~~~g------V~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI--~G~~VG 155 (191)
..++|+... +||+.|+.+...|+++. +.+-.+|+++++++.+ ..+-.++|++.+ ||+.++
T Consensus 15 ~~vVV~F~A----~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~----~~~V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 15 KVVVIRFGR----DWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNK----MYELYDPPTVMFFFRNKHMK 82 (114)
T ss_pred CEEEEEEEC----CCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHH----HcCCCCCCEEEEEECCEEEE
Confidence 345554443 69999999988887663 3567789988876544 446778888744 887654
No 97
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=97.65 E-value=8.6e-05 Score=51.34 Aligned_cols=65 Identities=17% Similarity=0.163 Sum_probs=50.4
Q ss_pred CChhHHHHHHHHHHcCCCceEeecCC---CHHHHHHHHhhCCCCcccEEEE-CCEEEeechhhHHHHHH
Q 029558 102 QCGFSHTVVQILKSLNAPFETVNILE---NEMLRQGLKEYSSWPTFPQLYI-EGEFFGGCDITVGKLMD 166 (191)
Q Consensus 102 ~Cp~C~kak~iL~~~gV~y~~vdV~~---d~~~r~~Lk~~sg~~tvP~IfI-~G~~VGG~del~~~lke 166 (191)
.||||+|+.-+|+++|++|+...+.. +.....++.++++..++|.+.. +|+.+.....+.+++.+
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~ 69 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEE 69 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhc
Confidence 49999999999999999998766622 2222355788899999999998 89999988888877754
No 98
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=97.65 E-value=0.00046 Score=52.19 Aligned_cols=61 Identities=20% Similarity=0.275 Sum_probs=43.5
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHc-----CCCceEeecCCCHHHHHHHHhhCCCCcccEE--EECCEEEe
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFG 155 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~-----gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~I--fI~G~~VG 155 (191)
...|+++... |||+.|+.+...|+++ ++.+..+|+++++++.+.+ +..++|++ |-+|+.++
T Consensus 22 ~~~vvV~f~a----~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~----~v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 22 SERVVCHFYH----PEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKL----NIKVLPTVILFKNGKTVD 89 (113)
T ss_pred CCcEEEEEEC----CCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHC----CCccCCEEEEEECCEEEE
Confidence 4566666665 7999999998888774 4677888888877654443 55677776 44887553
No 99
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=97.59 E-value=0.00043 Score=47.90 Aligned_cols=70 Identities=20% Similarity=0.164 Sum_probs=54.2
Q ss_pred EEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCC--CHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHH
Q 029558 91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLM 165 (191)
Q Consensus 91 VIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~--d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lk 165 (191)
.+|.. +.+++|++++-+|++.|++|+.+.++. .+...+++.+......+|.+..+|..+.....+..++.
T Consensus 2 ~ly~~-----~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~ 73 (76)
T cd03050 2 KLYYD-----LMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLA 73 (76)
T ss_pred EEeeC-----CCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 46666 589999999999999999999887753 22233456777888999999988887777777666654
No 100
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.55 E-value=0.00024 Score=44.07 Aligned_cols=55 Identities=27% Similarity=0.437 Sum_probs=42.0
Q ss_pred EEEEecCCCCCCChhHHHHHHHHH-----HcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECC
Q 029558 91 VLFMKGTKDFPQCGFSHTVVQILK-----SLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEG 151 (191)
Q Consensus 91 VIYsk~~~~~p~Cp~C~kak~iL~-----~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G 151 (191)
++|... +|++|.++...+. +.++.+..++++...+..+.. ...+...+|.+++.+
T Consensus 2 ~~~~~~-----~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~P~~~~~~ 61 (69)
T cd01659 2 VLFYAP-----WCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKEL-KRYGVGGVPTLVVFG 61 (69)
T ss_pred EEEECC-----CChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHH-HhCCCccccEEEEEe
Confidence 556664 9999999999999 567888999988776655442 345678899998865
No 101
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00031 Score=62.27 Aligned_cols=88 Identities=17% Similarity=0.257 Sum_probs=64.4
Q ss_pred HHHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHcC------CCceEeecCCCHHHHHHHHhhCCCCcccEE--E
Q 029558 77 LKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLN------APFETVNILENEMLRQGLKEYSSWPTFPQL--Y 148 (191)
Q Consensus 77 ~~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~g------V~y~~vdV~~d~~~r~~Lk~~sg~~tvP~I--f 148 (191)
.+..+-+-....+|+|+... |||+.|+.....|+++- +....+|+|.++.+-.. .|..++|.| |
T Consensus 33 fe~~V~~~S~~~PVlV~fWa----p~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaq----fgiqsIPtV~af 104 (304)
T COG3118 33 FEQEVIQSSREVPVLVDFWA----PWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQ----FGVQSIPTVYAF 104 (304)
T ss_pred HHHHHHHHccCCCeEEEecC----CCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHH----hCcCcCCeEEEe
Confidence 35555566667788888886 99999999999998873 44577899888776554 478899998 5
Q ss_pred ECCEEEeechhhH--HHHHHHHhhcC
Q 029558 149 IEGEFFGGCDITV--GKLMDFLNLLN 172 (191)
Q Consensus 149 I~G~~VGG~del~--~~lke~L~~lg 172 (191)
++|+.|-||.-.. +.+++.|+++.
T Consensus 105 ~dGqpVdgF~G~qPesqlr~~ld~~~ 130 (304)
T COG3118 105 KDGQPVDGFQGAQPESQLRQFLDKVL 130 (304)
T ss_pred eCCcCccccCCCCcHHHHHHHHHHhc
Confidence 6999887765332 34666666654
No 102
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.51 E-value=0.00064 Score=49.80 Aligned_cols=65 Identities=9% Similarity=0.221 Sum_probs=40.9
Q ss_pred HHHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHc-------C--CCceEeecCCCHHHHHHHHhhCCCCcccEE
Q 029558 77 LKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------N--APFETVNILENEMLRQGLKEYSSWPTFPQL 147 (191)
Q Consensus 77 ~~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~-------g--V~y~~vdV~~d~~~r~~Lk~~sg~~tvP~I 147 (191)
+++.++++.+...++|+... +|||+|++....|++. + +.+..+|++..+++ .+..+-.++|++
T Consensus 5 ~~~~~~~~~~~~~vlv~f~a----~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~I~~~Pt~ 76 (104)
T cd03000 5 LDDSFKDVRKEDIWLVDFYA----PWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSI----ASEFGVRGYPTI 76 (104)
T ss_pred chhhhhhhccCCeEEEEEEC----CCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhH----HhhcCCccccEE
Confidence 34555555666666666665 7999999887777553 2 33344566555543 334567788888
Q ss_pred EE
Q 029558 148 YI 149 (191)
Q Consensus 148 fI 149 (191)
++
T Consensus 77 ~l 78 (104)
T cd03000 77 KL 78 (104)
T ss_pred EE
Confidence 54
No 103
>PTZ00051 thioredoxin; Provisional
Probab=97.51 E-value=0.00099 Score=47.71 Aligned_cols=68 Identities=13% Similarity=0.281 Sum_probs=42.2
Q ss_pred HHHHhhcCC-cEEEEEecCCCCCCChhHHHHHHHHHHc-----CCCceEeecCCCHHHHHHHHhhCCCCcccEEEE--CC
Q 029558 80 TLDKVVTGN-KVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EG 151 (191)
Q Consensus 80 ~l~~~i~~~-kVVIYsk~~~~~p~Cp~C~kak~iL~~~-----gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI--~G 151 (191)
.+++++..+ .++++... +||+.|+.....|.+. ++.+..+|++++.++.+ ..+...+|.+.+ +|
T Consensus 10 ~~~~~~~~~~~vli~f~~----~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~----~~~v~~~Pt~~~~~~g 81 (98)
T PTZ00051 10 EFESTLSQNELVIVDFYA----EWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAE----KENITSMPTFKVFKNG 81 (98)
T ss_pred HHHHHHhcCCeEEEEEEC----CCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHH----HCCCceeeEEEEEeCC
Confidence 344444554 34444443 6999999998888774 45666777766554433 335567776544 88
Q ss_pred EEEe
Q 029558 152 EFFG 155 (191)
Q Consensus 152 ~~VG 155 (191)
+.++
T Consensus 82 ~~~~ 85 (98)
T PTZ00051 82 SVVD 85 (98)
T ss_pred eEEE
Confidence 6554
No 104
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=97.48 E-value=0.00094 Score=49.97 Aligned_cols=61 Identities=23% Similarity=0.344 Sum_probs=41.6
Q ss_pred CcEEEEEecCCCCCCChhHHHHHHHHHHc-----CCCceEeecCCCHHHHHHHHhhCCCCcccEE--EECCEEEeec
Q 029558 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFGGC 157 (191)
Q Consensus 88 ~kVVIYsk~~~~~p~Cp~C~kak~iL~~~-----gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~I--fI~G~~VGG~ 157 (191)
..++|+... |||+.|+.+...|+++ ++.|-.+|++++ .+.+..+-..+|.+ |.+|+.++..
T Consensus 25 ~~vvv~F~a----~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-----~l~~~~~i~~~Pt~~~f~~G~~v~~~ 92 (113)
T cd02957 25 TRVVVHFYE----PGFPRCKILDSHLEELAAKYPETKFVKINAEKA-----FLVNYLDIKVLPTLLVYKNGELIDNI 92 (113)
T ss_pred CEEEEEEeC----CCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-----HHHHhcCCCcCCEEEEEECCEEEEEE
Confidence 456655554 7999999998888765 355566666544 45555577788877 4589876543
No 105
>PRK10026 arsenate reductase; Provisional
Probab=97.46 E-value=0.00019 Score=57.20 Aligned_cols=37 Identities=16% Similarity=0.508 Sum_probs=33.3
Q ss_pred CcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCH
Q 029558 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENE 129 (191)
Q Consensus 88 ~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~ 129 (191)
..+.||+. |.|.-|++++++|+++|++|+++|+.+++
T Consensus 2 ~~i~iY~~-----p~Cst~RKA~~wL~~~gi~~~~~d~~~~p 38 (141)
T PRK10026 2 SNITIYHN-----PACGTSRNTLEMIRNSGTEPTIIHYLETP 38 (141)
T ss_pred CEEEEEeC-----CCCHHHHHHHHHHHHCCCCcEEEeeeCCC
Confidence 46889998 69999999999999999999999997653
No 106
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=97.44 E-value=0.002 Score=47.27 Aligned_cols=79 Identities=16% Similarity=0.190 Sum_probs=45.0
Q ss_pred HHHhhc-CCcEEEEEecCCCCCCChhHHHHHHHHHHc----C---CCceEeecCCCHHHHHHHHhhCCCCcccEEE--EC
Q 029558 81 LDKVVT-GNKVVLFMKGTKDFPQCGFSHTVVQILKSL----N---APFETVNILENEMLRQGLKEYSSWPTFPQLY--IE 150 (191)
Q Consensus 81 l~~~i~-~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~----g---V~y~~vdV~~d~~~r~~Lk~~sg~~tvP~If--I~ 150 (191)
++++++ ...++|+... +||+.|+.....|++. + +.+..+|++ +++ +.+..+...+|.++ -|
T Consensus 10 ~~~~i~~~~~vvv~F~a----~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~----~~~~~~v~~~Pt~~~~~~ 80 (102)
T cd02948 10 WEELLSNKGLTVVDVYQ----EWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TID----TLKRYRGKCEPTFLFYKN 80 (102)
T ss_pred HHHHHccCCeEEEEEEC----CcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHH----HHHHcCCCcCcEEEEEEC
Confidence 333443 3445555554 6999999888888654 2 234556665 333 33344677888654 48
Q ss_pred CEE---EeechhhHHHHHHHHhh
Q 029558 151 GEF---FGGCDITVGKLMDFLNL 170 (191)
Q Consensus 151 G~~---VGG~del~~~lke~L~~ 170 (191)
|+. +.|.+. +.+.+.+++
T Consensus 81 g~~~~~~~G~~~--~~~~~~i~~ 101 (102)
T cd02948 81 GELVAVIRGANA--PLLNKTITE 101 (102)
T ss_pred CEEEEEEecCCh--HHHHHHHhh
Confidence 864 445544 444444443
No 107
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=97.43 E-value=0.00062 Score=56.01 Aligned_cols=74 Identities=20% Similarity=0.229 Sum_probs=59.4
Q ss_pred cEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHHHHH
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLMDFL 168 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lke~L 168 (191)
.+.+|+. +.|++|.+++-+|++.|++|+.+.|+-. ...+++++++-..++|++..||..+-....+.+++.+..
T Consensus 10 ~~~Ly~~-----~~s~~~~rv~~~L~e~gl~~e~~~v~~~-~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~~~~ 83 (211)
T PRK09481 10 VMTLFSG-----PTDIYSHQVRIVLAEKGVSVEIEQVEKD-NLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLDERF 83 (211)
T ss_pred eeEEeCC-----CCChhHHHHHHHHHHCCCCCEEEeCCcc-cCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHHHHhC
Confidence 4789987 4899999999999999999999988642 223456677788999999999988877777777776543
No 108
>PRK10996 thioredoxin 2; Provisional
Probab=97.41 E-value=0.0018 Score=50.55 Aligned_cols=67 Identities=25% Similarity=0.396 Sum_probs=41.4
Q ss_pred HHHHhhcC-CcEEEEEecCCCCCCChhHHHHHHHHHHc------CCCceEeecCCCHHHHHHHHhhCCCCcccEEEE--C
Q 029558 80 TLDKVVTG-NKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--E 150 (191)
Q Consensus 80 ~l~~~i~~-~kVVIYsk~~~~~p~Cp~C~kak~iL~~~------gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI--~ 150 (191)
.++++++. ..++|+... +||+.|+.....|.+. ++.+-.+|+++++++.+. .+..++|.+++ +
T Consensus 44 ~~~~~i~~~k~vvv~F~a----~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~----~~V~~~Ptlii~~~ 115 (139)
T PRK10996 44 TLDKLLQDDLPVVIDFWA----PWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSAR----FRIRSIPTIMIFKN 115 (139)
T ss_pred HHHHHHhCCCeEEEEEEC----CCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHh----cCCCccCEEEEEEC
Confidence 34444443 445555554 6999999987777664 244556677777665443 35667776644 8
Q ss_pred CEEE
Q 029558 151 GEFF 154 (191)
Q Consensus 151 G~~V 154 (191)
|+.+
T Consensus 116 G~~v 119 (139)
T PRK10996 116 GQVV 119 (139)
T ss_pred CEEE
Confidence 8754
No 109
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=97.40 E-value=0.0014 Score=46.83 Aligned_cols=59 Identities=20% Similarity=0.260 Sum_probs=39.5
Q ss_pred CcEEEEEecCCCCCCChhHHHHHHHHHHcC------CCceEeecCCCHHHHHHHHhhCCCCcccEEEE--CCEEE
Q 029558 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLN------APFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFF 154 (191)
Q Consensus 88 ~kVVIYsk~~~~~p~Cp~C~kak~iL~~~g------V~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI--~G~~V 154 (191)
..++|+... +||+.|+.....|.+.. +.+-.+|++.++++.+ ..+...+|++++ +|+.+
T Consensus 13 ~~vlv~f~a----~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~----~~~i~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 13 VPVVVDFWA----PRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQ----QFGVQALPTVYLFAAGQPV 79 (96)
T ss_pred CeEEEEEEC----CCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHH----HcCCCCCCEEEEEeCCEEe
Confidence 356565555 79999999988887642 3345667766655433 446678888864 77654
No 110
>PRK10853 putative reductase; Provisional
Probab=97.39 E-value=0.00022 Score=54.94 Aligned_cols=34 Identities=12% Similarity=0.174 Sum_probs=31.1
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCC
Q 029558 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN 128 (191)
Q Consensus 90 VVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d 128 (191)
++||+. |.|.-|++|+++|+++|++|+.+|+.++
T Consensus 2 i~iy~~-----~~C~t~rkA~~~L~~~~i~~~~~d~~k~ 35 (118)
T PRK10853 2 VTLYGI-----KNCDTIKKARRWLEAQGIDYRFHDYRVD 35 (118)
T ss_pred EEEEcC-----CCCHHHHHHHHHHHHcCCCcEEeehccC
Confidence 678988 6999999999999999999999999764
No 111
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.38 E-value=0.0015 Score=54.39 Aligned_cols=68 Identities=22% Similarity=0.300 Sum_probs=44.0
Q ss_pred HHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHcC-----CCceEeecC--CCHHHHHHHHhhCCCCcccEEEE--CC
Q 029558 81 LDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLN-----APFETVNIL--ENEMLRQGLKEYSSWPTFPQLYI--EG 151 (191)
Q Consensus 81 l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~g-----V~y~~vdV~--~d~~~r~~Lk~~sg~~tvP~IfI--~G 151 (191)
++.+.+...+++|+. .+++|||+|+.+..+|++.. +++..++++ ++++ +.+..+..++|.+.+ ||
T Consensus 14 ~~~~~~~~~i~~f~~--~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~----l~~~~~V~~~Pt~~~f~~g 87 (215)
T TIGR02187 14 LKELKNPVEIVVFTD--NDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKE----EAEKYGVERVPTTIILEEG 87 (215)
T ss_pred HHhcCCCeEEEEEcC--CCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHH----HHHHcCCCccCEEEEEeCC
Confidence 344445566778866 33469999999999997773 344466666 3444 444447778888866 65
Q ss_pred EEE
Q 029558 152 EFF 154 (191)
Q Consensus 152 ~~V 154 (191)
+.+
T Consensus 88 ~~~ 90 (215)
T TIGR02187 88 KDG 90 (215)
T ss_pred eee
Confidence 443
No 112
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=97.36 E-value=0.00065 Score=47.13 Aligned_cols=65 Identities=11% Similarity=-0.027 Sum_probs=50.5
Q ss_pred CCChhHHHHHHHHHHcCCCceEeecCCCH-HHHHHHHhhCCCCcccEEEEC-CEEEeechhhHHHHH
Q 029558 101 PQCGFSHTVVQILKSLNAPFETVNILENE-MLRQGLKEYSSWPTFPQLYIE-GEFFGGCDITVGKLM 165 (191)
Q Consensus 101 p~Cp~C~kak~iL~~~gV~y~~vdV~~d~-~~r~~Lk~~sg~~tvP~IfI~-G~~VGG~del~~~lk 165 (191)
+.|++|.+++-+|++.|++|+.++++... ...+++++.+...++|.+..+ |..+.....+.+++.
T Consensus 7 ~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~ 73 (75)
T cd03044 7 PGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVA 73 (75)
T ss_pred CCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHh
Confidence 58999999999999999999998886431 223557778889999999984 777766666555553
No 113
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=97.35 E-value=0.003 Score=45.01 Aligned_cols=59 Identities=17% Similarity=0.221 Sum_probs=36.4
Q ss_pred CcEEEEEecCCCCCCChhHHHHHHHHHHc------CCCceEeecCCCHHHHHHHHhhCCCCcccEEE--ECCEEE
Q 029558 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLY--IEGEFF 154 (191)
Q Consensus 88 ~kVVIYsk~~~~~p~Cp~C~kak~iL~~~------gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~If--I~G~~V 154 (191)
..++++... +||+.|+++...|++. ++.+-.+|.++.+++ .+..+...+|.++ .+|+.+
T Consensus 15 ~~v~v~f~~----~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~----~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 15 KLLVLHFWA----PWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEI----SEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred CEEEEEEEC----CCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHH----HHhcCCccccEEEEEECCEEE
Confidence 345444444 6999999998888764 234444555544443 3334667788654 488754
No 114
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=97.35 E-value=0.0012 Score=45.43 Aligned_cols=68 Identities=10% Similarity=0.076 Sum_probs=52.4
Q ss_pred EEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCC--CHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHH
Q 029558 91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGK 163 (191)
Q Consensus 91 VIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~--d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~ 163 (191)
.+|.. +..++|.+++-.|++.|++|+.++++. .+...+.+++.+...++|.+..+|..+.....+.++
T Consensus 2 ~l~~~-----~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~Y 71 (73)
T cd03047 2 TIWGR-----RSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRY 71 (73)
T ss_pred EEEec-----CCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHH
Confidence 45655 489999999999999999999888753 223345677788889999999998877766665554
No 115
>PRK09381 trxA thioredoxin; Provisional
Probab=97.34 E-value=0.0019 Score=47.38 Aligned_cols=61 Identities=18% Similarity=0.269 Sum_probs=41.6
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHc------CCCceEeecCCCHHHHHHHHhhCCCCcccEEEE--CCEEEe
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFFG 155 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~------gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI--~G~~VG 155 (191)
...++++... ||||.|+.....|+++ ++.+-.+|++.++.+.+ ..+..++|.+++ +|+.++
T Consensus 21 ~~~vvv~f~~----~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~----~~~v~~~Pt~~~~~~G~~~~ 89 (109)
T PRK09381 21 DGAILVDFWA----EWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP----KYGIRGIPTLLLFKNGEVAA 89 (109)
T ss_pred CCeEEEEEEC----CCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHH----hCCCCcCCEEEEEeCCeEEE
Confidence 3455555554 6999999998887653 34566778877665433 347789998855 887664
No 116
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=97.32 E-value=0.00028 Score=53.77 Aligned_cols=35 Identities=26% Similarity=0.484 Sum_probs=31.3
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCH
Q 029558 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENE 129 (191)
Q Consensus 90 VVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~ 129 (191)
|.+|+. |.|.-|++++++|+++|++|+.+|+.+++
T Consensus 1 i~iy~~-----~~C~t~rkA~~~L~~~~i~~~~~di~~~p 35 (114)
T TIGR00014 1 VTIYHN-----PRCSKSRNTLALLEDKGIEPEVVKYLKNP 35 (114)
T ss_pred CEEEEC-----CCCHHHHHHHHHHHHCCCCeEEEeccCCC
Confidence 468888 69999999999999999999999997653
No 117
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=97.31 E-value=0.0003 Score=53.39 Aligned_cols=34 Identities=21% Similarity=0.469 Sum_probs=30.8
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCC
Q 029558 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN 128 (191)
Q Consensus 90 VVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d 128 (191)
|.+|+. |.|.-|++|+++|+++|++|+.+|+.++
T Consensus 1 i~iy~~-----~~C~t~rkA~~~L~~~~i~~~~~di~~~ 34 (112)
T cd03034 1 ITIYHN-----PRCSKSRNALALLEEAGIEPEIVEYLKT 34 (112)
T ss_pred CEEEEC-----CCCHHHHHHHHHHHHCCCCeEEEecccC
Confidence 468888 6999999999999999999999999764
No 118
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.29 E-value=0.0025 Score=52.01 Aligned_cols=58 Identities=22% Similarity=0.305 Sum_probs=40.1
Q ss_pred cEEEEEecCCCCCCChhHHHHHHHHHHc-----CCCceEeecCCCHHHHHHHHhhCCCCcccEE--EECCEEEe
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGEFFG 155 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak~iL~~~-----gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~I--fI~G~~VG 155 (191)
.|||+... |||+.|+.+...|+++ ++.|..+|++.. .+....+...+|++ |.||+.++
T Consensus 85 ~VVV~Fya----~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-----~l~~~f~v~~vPTlllyk~G~~v~ 149 (175)
T cd02987 85 TVVVHIYE----PGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-----GASDEFDTDALPALLVYKGGELIG 149 (175)
T ss_pred EEEEEEEC----CCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-----hhHHhCCCCCCCEEEEEECCEEEE
Confidence 67766665 7999999888887665 345666666543 45555577788866 45998664
No 119
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.27 E-value=0.0015 Score=45.35 Aligned_cols=64 Identities=20% Similarity=0.138 Sum_probs=51.2
Q ss_pred CCChhHHHHHHHHHHcCCCceEeecCCC-HHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHH
Q 029558 101 PQCGFSHTVVQILKSLNAPFETVNILEN-EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKL 164 (191)
Q Consensus 101 p~Cp~C~kak~iL~~~gV~y~~vdV~~d-~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~l 164 (191)
..+++|++++-+|++.|++|+.+.++-. ++...++++.+....+|.+..+|+.+.....+.+++
T Consensus 8 ~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL 72 (73)
T cd03043 8 NYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYL 72 (73)
T ss_pred CCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHHh
Confidence 5799999999999999999998877542 223456777888999999999998888777666553
No 120
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=97.27 E-value=0.0019 Score=55.38 Aligned_cols=78 Identities=21% Similarity=0.225 Sum_probs=61.2
Q ss_pred EEEEEecCCC---CCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHHH
Q 029558 90 VVLFMKGTKD---FPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLMD 166 (191)
Q Consensus 90 VVIYsk~~~~---~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lke 166 (191)
+.+|.|...+ .+.||+|++++-+|.+.|++|+.++|+-... .+++.++....++|++..+|..+.....+.+++.+
T Consensus 3 ~el~~ka~~~~~~~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~-~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~e 81 (236)
T TIGR00862 3 IELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRK-PEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEE 81 (236)
T ss_pred eEEEEecCCCCCcCCCCHhHHHHHHHHHHcCCCcEEEEECCCCC-CHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHHH
Confidence 4556554322 2679999999999999999999988864321 35577788888999999999999999998888886
Q ss_pred HH
Q 029558 167 FL 168 (191)
Q Consensus 167 ~L 168 (191)
..
T Consensus 82 ~~ 83 (236)
T TIGR00862 82 TL 83 (236)
T ss_pred Hc
Confidence 65
No 121
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.19 E-value=0.0037 Score=49.14 Aligned_cols=78 Identities=14% Similarity=0.186 Sum_probs=46.9
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHc------CCCceEeecCCCHHHHHHHHhhCCCCcccEEEE---CCEEEe--
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI---EGEFFG-- 155 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~------gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI---~G~~VG-- 155 (191)
...++|+... +||++|+.....|.++ .+.+..+|++.+. . ..+.+..+...+|++++ +|+.++
T Consensus 20 gk~vvV~F~A----~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~-~-~~~~~~~~V~~iPt~v~~~~~G~~v~~~ 93 (142)
T cd02950 20 GKPTLVEFYA----DWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK-W-LPEIDRYRVDGIPHFVFLDREGNEEGQS 93 (142)
T ss_pred CCEEEEEEEC----CcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc-c-HHHHHHcCCCCCCEEEEECCCCCEEEEE
Confidence 3456666555 6999999998888754 2456667776542 1 22334457788898754 576442
Q ss_pred -ec---hhhHHHHHHHHhh
Q 029558 156 -GC---DITVGKLMDFLNL 170 (191)
Q Consensus 156 -G~---del~~~lke~L~~ 170 (191)
|. +++.+.++++++.
T Consensus 94 ~G~~~~~~l~~~l~~l~~~ 112 (142)
T cd02950 94 IGLQPKQVLAQNLDALVAG 112 (142)
T ss_pred eCCCCHHHHHHHHHHHHcC
Confidence 32 3344555555543
No 122
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=97.15 E-value=0.0023 Score=43.70 Aligned_cols=63 Identities=16% Similarity=0.124 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHHcCCCceEeecCCC--HHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHHH
Q 029558 104 GFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLMD 166 (191)
Q Consensus 104 p~C~kak~iL~~~gV~y~~vdV~~d--~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lke 166 (191)
+.|.+++-+|.+.|++|+.+.++.. .....++++.+....+|.+..+|..+.....+..++.+
T Consensus 9 ~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~~ 73 (76)
T cd03046 9 SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLAE 73 (76)
T ss_pred CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHHH
Confidence 5689999999999999998877632 23345566778889999999999988888888777654
No 123
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.15 E-value=0.0026 Score=45.55 Aligned_cols=66 Identities=17% Similarity=0.308 Sum_probs=39.9
Q ss_pred HHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHc---------CCCceEeecCCCHHHHHHHHhhCCCCcccEEEE--
Q 029558 81 LDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL---------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI-- 149 (191)
Q Consensus 81 l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~---------gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI-- 149 (191)
+++.+..++++++... +||+.|++....+++. ++.+-.+|.+.++++ .+..+...+|.+++
T Consensus 10 f~~~~~~~~~lv~f~a----~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~ 81 (102)
T cd03005 10 FDHHIAEGNHFVKFFA----PWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHREL----CSEFQVRGYPTLLLFK 81 (102)
T ss_pred HHHHhhcCCEEEEEEC----CCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhh----HhhcCCCcCCEEEEEe
Confidence 4444444556555554 6999999887777554 234455666655543 33346778898654
Q ss_pred CCEEE
Q 029558 150 EGEFF 154 (191)
Q Consensus 150 ~G~~V 154 (191)
+|+.+
T Consensus 82 ~g~~~ 86 (102)
T cd03005 82 DGEKV 86 (102)
T ss_pred CCCee
Confidence 66533
No 124
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=97.14 E-value=0.0023 Score=44.25 Aligned_cols=70 Identities=21% Similarity=0.260 Sum_probs=52.5
Q ss_pred EEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCC--HHHHHHHHhhCCCCcccEEEEC-CEEEeechhhHHHHHH
Q 029558 91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYIE-GEFFGGCDITVGKLMD 166 (191)
Q Consensus 91 VIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d--~~~r~~Lk~~sg~~tvP~IfI~-G~~VGG~del~~~lke 166 (191)
.+|.. +.| .|.+++-+|.+.|++|+.++++.. +...+++.+.+....+|.+..+ |..+.....+.+++.+
T Consensus 2 ~Ly~~-----~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~~ 74 (77)
T cd03057 2 KLYYS-----PGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLAD 74 (77)
T ss_pred EEEeC-----CCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHHH
Confidence 45655 344 488999999999999998877542 2234567778889999999987 7878887777777654
No 125
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=97.14 E-value=0.0027 Score=49.05 Aligned_cols=72 Identities=15% Similarity=0.211 Sum_probs=46.3
Q ss_pred HHHHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHcC------CCceEeecCCCHHHHHHHHhhCCCCcccEEEE
Q 029558 76 ELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLN------APFETVNILENEMLRQGLKEYSSWPTFPQLYI 149 (191)
Q Consensus 76 ~~~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~g------V~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI 149 (191)
++.+.+.+. ....|||-... .|||.|+.+-.+|.++. +.+-.+|+++.+++.+.+. +...|++= +|.
T Consensus 4 ~~d~~i~~~-~~klVVVdF~a----~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~-I~amPtfv-ffk 76 (114)
T cd02986 4 EVDQAIKST-AEKVLVLRFGR----DEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFD-ISYIPSTI-FFF 76 (114)
T ss_pred HHHHHHHhc-CCCEEEEEEeC----CCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcC-ceeCcEEE-EEE
Confidence 445555544 34445444433 59999999999998874 4456689988888655542 22344444 677
Q ss_pred CCEEE
Q 029558 150 EGEFF 154 (191)
Q Consensus 150 ~G~~V 154 (191)
||+|+
T Consensus 77 ngkh~ 81 (114)
T cd02986 77 NGQHM 81 (114)
T ss_pred CCcEE
Confidence 88875
No 126
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=97.13 E-value=0.002 Score=50.02 Aligned_cols=72 Identities=17% Similarity=0.211 Sum_probs=43.5
Q ss_pred HHHHhhcCCc-EEEEEecCCCCCCChhHHHHHH-HHHH------cCCCc--eEeecCCCHHHHHHHH----hhCCCCccc
Q 029558 80 TLDKVVTGNK-VVLFMKGTKDFPQCGFSHTVVQ-ILKS------LNAPF--ETVNILENEMLRQGLK----EYSSWPTFP 145 (191)
Q Consensus 80 ~l~~~i~~~k-VVIYsk~~~~~p~Cp~C~kak~-iL~~------~gV~y--~~vdV~~d~~~r~~Lk----~~sg~~tvP 145 (191)
.++++.++++ |+|+..+ .||++|++..+ .+.+ ++-.| ..+|+++++++.+.+. .+.|...+|
T Consensus 7 al~~Ak~~~KpVll~f~a----~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~P 82 (124)
T cd02955 7 AFEKARREDKPIFLSIGY----STCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWP 82 (124)
T ss_pred HHHHHHHcCCeEEEEEcc----CCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCC
Confidence 4555555554 6666554 69999998854 3322 23344 4456666666544332 245777888
Q ss_pred EEEE---CCEEEe
Q 029558 146 QLYI---EGEFFG 155 (191)
Q Consensus 146 ~IfI---~G~~VG 155 (191)
.+++ +|+.+.
T Consensus 83 t~vfl~~~G~~~~ 95 (124)
T cd02955 83 LNVFLTPDLKPFF 95 (124)
T ss_pred EEEEECCCCCEEe
Confidence 8876 787773
No 127
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0058 Score=46.30 Aligned_cols=67 Identities=21% Similarity=0.269 Sum_probs=43.1
Q ss_pred HHHHHhhcC-CcEEEEEecCCCCCCChhHHHHHHHHHHcCCC-----ceEeecCCCHHHHHHHHhhCCCCcccEEEE--C
Q 029558 79 STLDKVVTG-NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAP-----FETVNILENEMLRQGLKEYSSWPTFPQLYI--E 150 (191)
Q Consensus 79 ~~l~~~i~~-~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~-----y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI--~ 150 (191)
...+..-.. ..||++..+ +|||.|+.+...+.++..+ |-.+|+++..+ +.+-.+-..+|++.+ |
T Consensus 12 ~~~~~~~~~~kliVvdF~a----~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~----~~~~~~V~~~PTf~f~k~ 83 (106)
T KOG0907|consen 12 LVLSAAEAGDKLVVVDFYA----TWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEE----VAKEFNVKAMPTFVFYKG 83 (106)
T ss_pred HHHHHhhCCCCeEEEEEEC----CCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHh----HHHhcCceEeeEEEEEEC
Confidence 333344443 455665555 5999999999999988554 45678876333 333346778888744 7
Q ss_pred CEE
Q 029558 151 GEF 153 (191)
Q Consensus 151 G~~ 153 (191)
|+.
T Consensus 84 g~~ 86 (106)
T KOG0907|consen 84 GEE 86 (106)
T ss_pred CEE
Confidence 753
No 128
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=97.08 E-value=0.0047 Score=49.59 Aligned_cols=55 Identities=11% Similarity=0.152 Sum_probs=37.0
Q ss_pred CCChhHHHHHHHHHHc-------CCCceEeecCCCHHHHHHHHhhC--CCCcccEE--EECCEEEe
Q 029558 101 PQCGFSHTVVQILKSL-------NAPFETVNILENEMLRQGLKEYS--SWPTFPQL--YIEGEFFG 155 (191)
Q Consensus 101 p~Cp~C~kak~iL~~~-------gV~y~~vdV~~d~~~r~~Lk~~s--g~~tvP~I--fI~G~~VG 155 (191)
|||+.|+.....|++. ++.+-.+|+++++++.+.+.-.+ +...+|++ |.+|+.++
T Consensus 57 ~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 57 TWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred CCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 6999999988877554 25567788888887766554221 12336655 55898664
No 129
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=97.08 E-value=0.0035 Score=45.90 Aligned_cols=66 Identities=20% Similarity=0.226 Sum_probs=36.0
Q ss_pred cEEEEEecCCCCCCChhHHHHHHHHHHc---------CCCceEeecCCCHH----------------HHHHHHhhCCCCc
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVVQILKSL---------NAPFETVNILENEM----------------LRQGLKEYSSWPT 143 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak~iL~~~---------gV~y~~vdV~~d~~----------------~r~~Lk~~sg~~t 143 (191)
.|++|+. ||||+|++..+.+.+. ++.+..++++++.+ ...++....|...
T Consensus 8 ~v~~F~~-----~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 8 IVVVFTD-----PWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp EEEEEE------TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred EEEEEEC-----CCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 3455544 7999999987777632 23334455544321 1234666678999
Q ss_pred ccEEEE-C--CE---EEeechh
Q 029558 144 FPQLYI-E--GE---FFGGCDI 159 (191)
Q Consensus 144 vP~IfI-~--G~---~VGG~de 159 (191)
+|.+++ | |+ .+.|+-.
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~ 104 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLS 104 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--
T ss_pred cCEEEEEcCCCCEEEEecCCCC
Confidence 999977 3 66 3445544
No 130
>PRK15113 glutathione S-transferase; Provisional
Probab=97.06 E-value=0.0038 Score=51.43 Aligned_cols=78 Identities=15% Similarity=0.150 Sum_probs=59.4
Q ss_pred CcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCC--CHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHH
Q 029558 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLM 165 (191)
Q Consensus 88 ~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~--d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lk 165 (191)
..+++|+.. .+.|++|.+++-+|.+.|++|+.+.++- .+...+++.+++-...||++..||..+-....+..++.
T Consensus 4 ~~~~Ly~~~---~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~ 80 (214)
T PRK15113 4 PAITLYSDA---HFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLE 80 (214)
T ss_pred CeEEEEeCC---CCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence 456788751 0259999999999999999999887763 23344667778889999999999987777777777766
Q ss_pred HHH
Q 029558 166 DFL 168 (191)
Q Consensus 166 e~L 168 (191)
+..
T Consensus 81 ~~~ 83 (214)
T PRK15113 81 ERF 83 (214)
T ss_pred HHc
Confidence 554
No 131
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=97.04 E-value=0.0057 Score=44.37 Aligned_cols=47 Identities=17% Similarity=0.364 Sum_probs=32.4
Q ss_pred CCChhHHHHHHHHHHc------CCCceEeecCCCHHHHHHHHhhCCCCcccEEEE--CC
Q 029558 101 PQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EG 151 (191)
Q Consensus 101 p~Cp~C~kak~iL~~~------gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI--~G 151 (191)
+||+.|++....+++. ++.+-.+|.++++++. +..+...+|++++ +|
T Consensus 29 ~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~i~~~Pt~~~~~~g 83 (104)
T cd03004 29 PWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLC----QQANIRAYPTIRLYPGN 83 (104)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHH----HHcCCCcccEEEEEcCC
Confidence 6999999988877655 2456677777665543 3346778887755 55
No 132
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.0027 Score=48.05 Aligned_cols=81 Identities=19% Similarity=0.334 Sum_probs=58.4
Q ss_pred CcEEEEEecCCCCCCChhH----HHHHHHHHHcCCCceEeecCCCHHHHHH--------HHhhCCCCcccEEEECCEEEe
Q 029558 88 NKVVLFMKGTKDFPQCGFS----HTVVQILKSLNAPFETVNILENEMLRQG--------LKEYSSWPTFPQLYIEGEFFG 155 (191)
Q Consensus 88 ~kVVIYsk~~~~~p~Cp~C----~kak~iL~~~gV~y~~vdV~~d~~~r~~--------Lk~~sg~~tvP~IfI~G~~VG 155 (191)
..|.+|.++... -+.- ++++.+|+.+.+.++++||...++.+++ .+-..|.+.-||||-++++.|
T Consensus 2 ~~irvyvasssg---~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~G 78 (108)
T KOG4023|consen 2 MVIRVYVASSSG---STEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCG 78 (108)
T ss_pred CceEEEEecCCC---chHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccc
Confidence 356778775322 2222 4678899999999999999876554444 444568999999999999999
Q ss_pred echhhHHHH-----HHHHhhc
Q 029558 156 GCDITVGKL-----MDFLNLL 171 (191)
Q Consensus 156 G~del~~~l-----ke~L~~l 171 (191)
+++.+.+.. .++|+..
T Consensus 79 dye~F~ea~E~ntl~eFL~la 99 (108)
T KOG4023|consen 79 DYELFFEAVEQNTLQEFLGLA 99 (108)
T ss_pred cHHHHHHHHHHHHHHHHHccC
Confidence 999986653 4555553
No 133
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=97.03 E-value=0.0036 Score=45.36 Aligned_cols=58 Identities=19% Similarity=0.385 Sum_probs=37.7
Q ss_pred CcEEEEEecCCCCCCChhHHHHHHHHHHcC------CCceEeecCCCHHHHHHHHhhCCCCcccEEEE--CCEE
Q 029558 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLN------APFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEF 153 (191)
Q Consensus 88 ~kVVIYsk~~~~~p~Cp~C~kak~iL~~~g------V~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI--~G~~ 153 (191)
..++|+... |||++|+.....+++.. +.+-.+|+++++++-+ ..+...+|++++ +|+.
T Consensus 19 ~~~~v~f~a----~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~----~~~v~~~Pt~~~~~~g~~ 84 (101)
T cd03003 19 EIWFVNFYS----PRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCR----SQGVNSYPSLYVFPSGMN 84 (101)
T ss_pred CeEEEEEEC----CCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHH----HcCCCccCEEEEEcCCCC
Confidence 334444444 69999999988887653 3455678777655433 336678888744 7753
No 134
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=97.00 E-value=0.0036 Score=45.97 Aligned_cols=64 Identities=16% Similarity=0.335 Sum_probs=40.3
Q ss_pred HHHhhcCCc-EEEEEecCCCCCCChhHHHHHHHHHHc------------CCCceEeecCCCHHHHHHHHhhCCCCcccEE
Q 029558 81 LDKVVTGNK-VVLFMKGTKDFPQCGFSHTVVQILKSL------------NAPFETVNILENEMLRQGLKEYSSWPTFPQL 147 (191)
Q Consensus 81 l~~~i~~~k-VVIYsk~~~~~p~Cp~C~kak~iL~~~------------gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~I 147 (191)
+++.+++++ ++|+... |||++|++....+++. .+.+-.+|.+.++++ .+..|..++|.+
T Consensus 11 f~~~i~~~~~vlv~F~a----~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l----~~~~~v~~~Ptl 82 (108)
T cd02996 11 IDDILQSAELVLVNFYA----DWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDI----ADRYRINKYPTL 82 (108)
T ss_pred HHHHHhcCCEEEEEEEC----CCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHH----HHhCCCCcCCEE
Confidence 334444443 4444443 7999999998888643 245566777776553 344477888987
Q ss_pred EE--CCE
Q 029558 148 YI--EGE 152 (191)
Q Consensus 148 fI--~G~ 152 (191)
++ +|+
T Consensus 83 ~~~~~g~ 89 (108)
T cd02996 83 KLFRNGM 89 (108)
T ss_pred EEEeCCc
Confidence 54 775
No 135
>PLN02378 glutathione S-transferase DHAR1
Probab=96.97 E-value=0.0029 Score=52.36 Aligned_cols=67 Identities=21% Similarity=0.281 Sum_probs=52.9
Q ss_pred CCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHHHHH
Q 029558 101 PQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLMDFL 168 (191)
Q Consensus 101 p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lke~L 168 (191)
+.||||+++.-+|++.|++|+.+.|+-.. ..+++.+++...++|.+..||..+.....+..++.+..
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~-~~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~~~~ 84 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSD-KPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKY 84 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCccc-CCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHhC
Confidence 48999999999999999999987775421 12346678889999999999988887777777776543
No 136
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=96.93 E-value=0.0061 Score=43.30 Aligned_cols=51 Identities=20% Similarity=0.339 Sum_probs=33.2
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHHcC--------CCceEeecCCCHHHHHHHHhhCCCCcccEEEE
Q 029558 90 VVLFMKGTKDFPQCGFSHTVVQILKSLN--------APFETVNILENEMLRQGLKEYSSWPTFPQLYI 149 (191)
Q Consensus 90 VVIYsk~~~~~p~Cp~C~kak~iL~~~g--------V~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI 149 (191)
++.|+. +||+.|++....|++.. +.+..+|.+.++++ .+..+...+|.+++
T Consensus 17 ~i~f~~-----~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~i~~~P~~~~ 75 (102)
T TIGR01126 17 LVEFYA-----PWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDL----ASRFGVSGFPTIKF 75 (102)
T ss_pred EEEEEC-----CCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHH----HHhCCCCcCCEEEE
Confidence 455555 59999998777665532 44555666655444 33447788998854
No 137
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=96.90 E-value=0.0063 Score=58.23 Aligned_cols=75 Identities=15% Similarity=0.200 Sum_probs=46.9
Q ss_pred hHHHHHHHHhhcC-CcEEEEEecCCCCCCChhHHHHHHH-H------HHc-CCCceEeecCCCHHHHHHHHhhCCCCccc
Q 029558 75 PELKSTLDKVVTG-NKVVLFMKGTKDFPQCGFSHTVVQI-L------KSL-NAPFETVNILENEMLRQGLKEYSSWPTFP 145 (191)
Q Consensus 75 ~~~~~~l~~~i~~-~kVVIYsk~~~~~p~Cp~C~kak~i-L------~~~-gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP 145 (191)
++.++.+++...+ ++|+|+... +||+.|++.... + +++ ++.+..+|++++++..+++.+..+...+|
T Consensus 461 ~~l~~~l~~a~~~gK~VlVdF~A----~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~g~P 536 (571)
T PRK00293 461 AELDQALAEAKGKGKPVMLDLYA----DWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVLGLP 536 (571)
T ss_pred HHHHHHHHHHHhcCCcEEEEEEC----CcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCCCCC
Confidence 4566677665554 456655554 699999987553 2 222 45566678876543334455556888899
Q ss_pred EEEE---CCEE
Q 029558 146 QLYI---EGEF 153 (191)
Q Consensus 146 ~IfI---~G~~ 153 (191)
.+++ ||+.
T Consensus 537 t~~~~~~~G~~ 547 (571)
T PRK00293 537 TILFFDAQGQE 547 (571)
T ss_pred EEEEECCCCCC
Confidence 8866 5654
No 138
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=96.89 E-value=0.0033 Score=54.53 Aligned_cols=66 Identities=14% Similarity=0.246 Sum_probs=52.6
Q ss_pred CChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHHHHH
Q 029558 102 QCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLMDFL 168 (191)
Q Consensus 102 ~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lke~L 168 (191)
.||||++++-+|+++|++|+.+.|+-.. ..+++.+++-...+|.+..+|..+.....+.+++.+..
T Consensus 72 ~cp~s~rV~i~L~ekgi~ye~~~vdl~~-~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~e~~ 137 (265)
T PLN02817 72 DCPFCQRVLLTLEEKHLPYDMKLVDLTN-KPEWFLKISPEGKVPVVKLDEKWVADSDVITQALEEKY 137 (265)
T ss_pred CCcHHHHHHHHHHHcCCCCEEEEeCcCc-CCHHHHhhCCCCCCCEEEECCEEEecHHHHHHHHHHHC
Confidence 7999999999999999999987775422 12345667778899999999988888888777776544
No 139
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=96.89 E-value=0.005 Score=46.92 Aligned_cols=49 Identities=16% Similarity=0.193 Sum_probs=32.2
Q ss_pred CCChhHHHHHHHHHHcC------CCceEeecCCCHHHHHHHHhhCCCCcccEE--EECCE
Q 029558 101 PQCGFSHTVVQILKSLN------APFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGE 152 (191)
Q Consensus 101 p~Cp~C~kak~iL~~~g------V~y~~vdV~~d~~~r~~Lk~~sg~~tvP~I--fI~G~ 152 (191)
|||++|+.....+++.. +.+-.+|++.+.++. .+..+..++|++ |.+|+
T Consensus 39 ~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~---~~~~~I~~~PTl~lf~~g~ 95 (113)
T cd03006 39 PWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKC---RKQKHFFYFPVIHLYYRSR 95 (113)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHH---HHhcCCcccCEEEEEECCc
Confidence 79999999988887763 345667777666542 122244556655 55775
No 140
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=96.86 E-value=0.0063 Score=46.69 Aligned_cols=63 Identities=21% Similarity=0.265 Sum_probs=42.4
Q ss_pred CCcEEEEEecCCCCCC--ChhHHHHHHHHHHcCC------CceEeecCCCHHHHHHHHhhCCCCcccEEEE--CCEEEee
Q 029558 87 GNKVVLFMKGTKDFPQ--CGFSHTVVQILKSLNA------PFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFFGG 156 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~--Cp~C~kak~iL~~~gV------~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI--~G~~VGG 156 (191)
..++|++... +| ||.|..+..+|++..- .+-.+|++++++ +....+-.++|++.+ ||+.++.
T Consensus 27 ~~~~v~~f~~----~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~----la~~f~V~sIPTli~fkdGk~v~~ 98 (111)
T cd02965 27 GGDLVLLLAG----DPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQA----LAARFGVLRTPALLFFRDGRYVGV 98 (111)
T ss_pred CCCEEEEecC----CcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHH----HHHHcCCCcCCEEEEEECCEEEEE
Confidence 3555554444 45 9999999999977633 345678877764 444557778887744 9987764
Q ss_pred c
Q 029558 157 C 157 (191)
Q Consensus 157 ~ 157 (191)
.
T Consensus 99 ~ 99 (111)
T cd02965 99 L 99 (111)
T ss_pred E
Confidence 3
No 141
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=96.84 E-value=0.0053 Score=47.50 Aligned_cols=56 Identities=7% Similarity=0.086 Sum_probs=33.6
Q ss_pred CCChhHHHHHHHHHHc------CCCceEeecCCCHH---HHHHHHhhCCCC-cccEEEE--CCEEEee
Q 029558 101 PQCGFSHTVVQILKSL------NAPFETVNILENEM---LRQGLKEYSSWP-TFPQLYI--EGEFFGG 156 (191)
Q Consensus 101 p~Cp~C~kak~iL~~~------gV~y~~vdV~~d~~---~r~~Lk~~sg~~-tvP~IfI--~G~~VGG 156 (191)
+|||.|+.+..+|++. ++.+-.+|+++.+. ....+....+.. .+|++.+ +|+.+-|
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l~~ 105 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQRLVE 105 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCceecc
Confidence 4999999887766554 35677788876431 113343333555 8888865 4444433
No 142
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=96.80 E-value=0.0086 Score=41.68 Aligned_cols=61 Identities=21% Similarity=0.368 Sum_probs=37.0
Q ss_pred HHHHhhcCC-cE-EEEEecCCCCCCChhHHHHHHHHHHc--------CCCceEeecCCCHHHHHHHHhhCCCCcccEEEE
Q 029558 80 TLDKVVTGN-KV-VLFMKGTKDFPQCGFSHTVVQILKSL--------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI 149 (191)
Q Consensus 80 ~l~~~i~~~-kV-VIYsk~~~~~p~Cp~C~kak~iL~~~--------gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI 149 (191)
.+.+.+.+. .+ ++|.. +||++|+++...+++. ++.+..+|.+++.+ +.+..+...+|.+++
T Consensus 7 ~~~~~i~~~~~~~v~f~~-----~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~i~~~Pt~~~ 77 (101)
T cd02961 7 NFDELVKDSKDVLVEFYA-----PWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANND----LCSEYGVRGYPTIKL 77 (101)
T ss_pred HHHHHHhCCCcEEEEEEC-----CCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHH----HHHhCCCCCCCEEEE
Confidence 344444444 44 45555 6999999988888653 23344455554333 444457789998855
No 143
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=96.79 E-value=0.012 Score=46.98 Aligned_cols=27 Identities=15% Similarity=0.181 Sum_probs=20.8
Q ss_pred hcCCcEEEEEecCCCCCCChhHHHHHHHHHH
Q 029558 85 VTGNKVVLFMKGTKDFPQCGFSHTVVQILKS 115 (191)
Q Consensus 85 i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~ 115 (191)
.+.+.|+||... +|||.|++....|.+
T Consensus 23 ~kgk~vlL~FwA----sWCppCr~e~P~L~~ 49 (146)
T cd03008 23 LENRVLLLFFGA----VVSPQCQLFAPKLKD 49 (146)
T ss_pred hCCCEEEEEEEC----CCChhHHHHHHHHHH
Confidence 345667777765 599999999888865
No 144
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=96.78 E-value=0.0034 Score=47.79 Aligned_cols=73 Identities=15% Similarity=0.312 Sum_probs=43.9
Q ss_pred HHHHHHHhhcCCc-EEEEEecCCCCCCChhHHHHHHHHHHc------CCCceEeecCCCHHH-HHHHHhhCCCCcccEEE
Q 029558 77 LKSTLDKVVTGNK-VVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEML-RQGLKEYSSWPTFPQLY 148 (191)
Q Consensus 77 ~~~~l~~~i~~~k-VVIYsk~~~~~p~Cp~C~kak~iL~~~------gV~y~~vdV~~d~~~-r~~Lk~~sg~~tvP~If 148 (191)
.++.++.+..+++ |+|+..+ +||++|++....+.+. +..|..+|++.+++. .+.+... | ..+|+++
T Consensus 8 ~~~al~~A~~~~kpVlV~F~a----~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~-g-~~vPt~~ 81 (117)
T cd02959 8 LEDGIKEAKDSGKPLMLLIHK----TWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPD-G-GYIPRIL 81 (117)
T ss_pred HHHHHHHHHHcCCcEEEEEeC----CcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccC-C-CccceEE
Confidence 4566666665554 5554443 5999999998888773 446778888765422 2222211 1 1388875
Q ss_pred E---CCEEEe
Q 029558 149 I---EGEFFG 155 (191)
Q Consensus 149 I---~G~~VG 155 (191)
+ +|+.++
T Consensus 82 f~~~~Gk~~~ 91 (117)
T cd02959 82 FLDPSGDVHP 91 (117)
T ss_pred EECCCCCCch
Confidence 5 665543
No 145
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=96.78 E-value=0.0025 Score=47.82 Aligned_cols=35 Identities=17% Similarity=0.409 Sum_probs=25.2
Q ss_pred CCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHH
Q 029558 101 PQCGFSHTVVQILKSLNAPFETVNILENEMLRQGL 135 (191)
Q Consensus 101 p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~L 135 (191)
|.|.-|++|+++|+++|++|+.+|+.+++--+++|
T Consensus 4 ~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el 38 (110)
T PF03960_consen 4 PNCSTCRKALKWLEENGIEYEFIDYKKEPLSREEL 38 (110)
T ss_dssp TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHH
T ss_pred CCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHH
Confidence 69999999999999999999999998754333333
No 146
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0057 Score=52.59 Aligned_cols=76 Identities=21% Similarity=0.093 Sum_probs=60.9
Q ss_pred CcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhC-CCCcccEEEECCEEEeechhhHHHHHH
Q 029558 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYS-SWPTFPQLYIEGEFFGGCDITVGKLMD 166 (191)
Q Consensus 88 ~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~s-g~~tvP~IfI~G~~VGG~del~~~lke 166 (191)
..|.+|+.- .|||.+|++=.|+..||+|++++++-.. --+.|.+.. -+..+|++..||+.|.-.-.+.+++.+
T Consensus 8 ~~vrL~~~w-----~sPfa~R~~iaL~~KgI~yE~veedl~~-Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe 81 (231)
T KOG0406|consen 8 GTVKLLGMW-----FSPFAQRVRIALKLKGIPYEYVEEDLTN-KSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDE 81 (231)
T ss_pred CeEEEEEee-----cChHHHHHHHHHHhcCCceEEEecCCCC-CCHHHHHhccccccCCEEEECCceehhhHHHHHHHHh
Confidence 679999874 7999999999999999999999886422 223355555 588999999999999888888888776
Q ss_pred HHh
Q 029558 167 FLN 169 (191)
Q Consensus 167 ~L~ 169 (191)
...
T Consensus 82 ~w~ 84 (231)
T KOG0406|consen 82 TWP 84 (231)
T ss_pred hcc
Confidence 554
No 147
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=96.77 E-value=0.0074 Score=46.68 Aligned_cols=69 Identities=12% Similarity=0.184 Sum_probs=44.8
Q ss_pred HHHHHhhcCC--cEEEEEecCCCCCCChh--HH----------HHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcc
Q 029558 79 STLDKVVTGN--KVVLFMKGTKDFPQCGF--SH----------TVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTF 144 (191)
Q Consensus 79 ~~l~~~i~~~--kVVIYsk~~~~~p~Cp~--C~----------kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tv 144 (191)
+.+++.+.++ .+++|... +||+. |+ .+.++|++.++.+-.+|+++++++.+.+ |-.++
T Consensus 17 ~nF~~~v~~~~~~vvv~f~a----~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~----~I~~i 88 (120)
T cd03065 17 KNYKQVLKKYDVLCLLYHEP----VESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKL----GLDEE 88 (120)
T ss_pred hhHHHHHHhCCceEEEEECC----CcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHc----CCccc
Confidence 3444444444 56677664 57765 97 2344555668899999999887765544 56677
Q ss_pred cEE--EECCEEEe
Q 029558 145 PQL--YIEGEFFG 155 (191)
Q Consensus 145 P~I--fI~G~~VG 155 (191)
|++ |.||+.+.
T Consensus 89 PTl~lfk~G~~v~ 101 (120)
T cd03065 89 DSIYVFKDDEVIE 101 (120)
T ss_pred cEEEEEECCEEEE
Confidence 776 55997653
No 148
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=96.77 E-value=0.0089 Score=42.80 Aligned_cols=52 Identities=17% Similarity=0.228 Sum_probs=34.2
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHHc------CCCceEeecCCCHHHHHHHHhhCCCCcccEEEE
Q 029558 90 VVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI 149 (191)
Q Consensus 90 VVIYsk~~~~~p~Cp~C~kak~iL~~~------gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI 149 (191)
++++... +||+.|++....|.+. .+.+-.+|+++++++.+ ..+...+|.+++
T Consensus 21 vlv~f~a----~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~----~~~i~~~P~~~~ 78 (103)
T cd03001 21 WLVEFYA----PWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQ----QYGVRGFPTIKV 78 (103)
T ss_pred EEEEEEC----CCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHH----HCCCCccCEEEE
Confidence 5544444 6999999998877664 24456667766655433 336778997744
No 149
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=96.76 E-value=0.0081 Score=44.48 Aligned_cols=47 Identities=23% Similarity=0.370 Sum_probs=30.0
Q ss_pred CCChhHHHHHHHHHHc-------CCCceEeecCCCHHHHHHHHhhCCCCcccEEEE
Q 029558 101 PQCGFSHTVVQILKSL-------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI 149 (191)
Q Consensus 101 p~Cp~C~kak~iL~~~-------gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI 149 (191)
+||++|++....|.+. ++.+-.+|++.+. ....++..+...+|.+++
T Consensus 31 ~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~--~~~~~~~~~v~~~Pti~~ 84 (109)
T cd02993 31 PWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQ--REFAKEELQLKSFPTILF 84 (109)
T ss_pred CCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccc--hhhHHhhcCCCcCCEEEE
Confidence 6999999998888665 2445556665521 122333457788998753
No 150
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=96.75 E-value=0.012 Score=47.03 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=36.6
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHHcC------CCceEeecCCCHHHHHHHHhhCCCCcccEE--EECCE
Q 029558 90 VVLFMKGTKDFPQCGFSHTVVQILKSLN------APFETVNILENEMLRQGLKEYSSWPTFPQL--YIEGE 152 (191)
Q Consensus 90 VVIYsk~~~~~p~Cp~C~kak~iL~~~g------V~y~~vdV~~d~~~r~~Lk~~sg~~tvP~I--fI~G~ 152 (191)
|+-|+. +||+.|+..-.+|++.. +.+-.+|||+++++.+.+.-. + ..|.+ |-||+
T Consensus 27 VvdF~A-----~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~-~--~~t~~~ffk~g~ 89 (142)
T PLN00410 27 VIRFGH-----DWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELY-D--PCTVMFFFRNKH 89 (142)
T ss_pred EEEEEC-----CCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCcc-C--CCcEEEEEECCe
Confidence 344555 49999999999998874 234678999988876655332 2 33444 44776
No 151
>PLN02473 glutathione S-transferase
Probab=96.64 E-value=0.0092 Score=48.70 Aligned_cols=74 Identities=8% Similarity=-0.028 Sum_probs=57.1
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCC--CHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHHHH
Q 029558 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLMDF 167 (191)
Q Consensus 90 VVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~--d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lke~ 167 (191)
+.+|.. +.+++|.+++-+|.++|++|+.+.++- .+....++...+...++|.+..||..+.....+.+++.+.
T Consensus 3 ~kLy~~-----~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~~~ 77 (214)
T PLN02473 3 VKVYGQ-----IKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYYATK 77 (214)
T ss_pred eEEecC-----CCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHHHHH
Confidence 467765 489999999999999999999887642 2223344445677889999999998888888888887655
Q ss_pred H
Q 029558 168 L 168 (191)
Q Consensus 168 L 168 (191)
.
T Consensus 78 ~ 78 (214)
T PLN02473 78 Y 78 (214)
T ss_pred c
Confidence 3
No 152
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=96.61 E-value=0.016 Score=50.53 Aligned_cols=67 Identities=15% Similarity=0.352 Sum_probs=44.1
Q ss_pred HHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHH----cCCCceEeecCCCHH-------HHHHHHhhCCCCcccE
Q 029558 78 KSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKS----LNAPFETVNILENEM-------LRQGLKEYSSWPTFPQ 146 (191)
Q Consensus 78 ~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~----~gV~y~~vdV~~d~~-------~r~~Lk~~sg~~tvP~ 146 (191)
...++++.....++.|..+ ||++|+....+|++ +|+.+..++++.+.. .-..+.+..|...+|.
T Consensus 158 ~~~l~~l~~k~~Lv~F~As-----wCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPt 232 (271)
T TIGR02740 158 DRVMKDLAKKSGLFFFFKS-----DCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPA 232 (271)
T ss_pred HHHHHHhcCCeEEEEEECC-----CCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCe
Confidence 4566666666666667774 99999988877754 466666677765320 0022344558889999
Q ss_pred EEE
Q 029558 147 LYI 149 (191)
Q Consensus 147 IfI 149 (191)
+|+
T Consensus 233 l~L 235 (271)
T TIGR02740 233 VFL 235 (271)
T ss_pred EEE
Confidence 976
No 153
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=96.59 E-value=0.012 Score=43.23 Aligned_cols=55 Identities=13% Similarity=0.183 Sum_probs=35.1
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHc-----CCCceEeecC-CCHHHHHHHHhhCCCCcccEEEE
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNIL-ENEMLRQGLKEYSSWPTFPQLYI 149 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~-----gV~y~~vdV~-~d~~~r~~Lk~~sg~~tvP~IfI 149 (191)
.+.++|+... +||++|++....|+++ ++.+-.+|.+ ++++ +.+..+...+|++++
T Consensus 18 g~~vlV~F~a----~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~----l~~~~~V~~~PT~~l 78 (100)
T cd02999 18 EDYTAVLFYA----SWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPS----LLSRYGVVGFPTILL 78 (100)
T ss_pred CCEEEEEEEC----CCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHH----HHHhcCCeecCEEEE
Confidence 3445554444 6999999999888776 3444455555 3443 444457778897754
No 154
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=96.57 E-value=0.013 Score=48.63 Aligned_cols=76 Identities=17% Similarity=0.308 Sum_probs=45.6
Q ss_pred EEEEEecCCCCCCChhHHHHHHHH----HHcCCCceEeecCCCH---------HHHHHHHhhCC--CCcccEEEE---CC
Q 029558 90 VVLFMKGTKDFPQCGFSHTVVQIL----KSLNAPFETVNILENE---------MLRQGLKEYSS--WPTFPQLYI---EG 151 (191)
Q Consensus 90 VVIYsk~~~~~p~Cp~C~kak~iL----~~~gV~y~~vdV~~d~---------~~r~~Lk~~sg--~~tvP~IfI---~G 151 (191)
+++|+.+ |||+|++....| +++++.+.-++++++. +-...+.+..| ...+|..|+ +|
T Consensus 73 lV~Fwas-----wCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G 147 (181)
T PRK13728 73 VVLFMQG-----HCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNT 147 (181)
T ss_pred EEEEECC-----CCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCC
Confidence 8888886 999999885444 5557776666665431 11223444445 268999887 66
Q ss_pred E-----EEeech--hhHHHHHHHHhh
Q 029558 152 E-----FFGGCD--ITVGKLMDFLNL 170 (191)
Q Consensus 152 ~-----~VGG~d--el~~~lke~L~~ 170 (191)
+ ++|..+ ++.+.++++++.
T Consensus 148 ~i~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 148 LEALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred cEEEEEEECCCCHHHHHHHHHHHHhh
Confidence 4 346554 344445555544
No 155
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=96.54 E-value=0.0092 Score=50.72 Aligned_cols=66 Identities=18% Similarity=0.233 Sum_probs=54.3
Q ss_pred CChhHHHHHHHHHHcCCCceE--eecCCCHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHHHHHhh
Q 029558 102 QCGFSHTVVQILKSLNAPFET--VNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLMDFLNL 170 (191)
Q Consensus 102 ~Cp~C~kak~iL~~~gV~y~~--vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lke~L~~ 170 (191)
.||||+++...|...+++|.. +|+...++ .++.++....+|.+-+||+.+-..+.+.+.+++.+..
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~kp~---~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~ 87 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSRKPE---WFLDISPGGKPPVLKFDEKWVTDSDKIEEFLEEKLPP 87 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCCCcH---HHHhhCCCCCCCeEEeCCceeccHHHHHHHHHHhcCC
Confidence 699999999999999998755 55544443 4777888999999999999999999888888776643
No 156
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=96.46 E-value=0.03 Score=47.77 Aligned_cols=59 Identities=12% Similarity=0.269 Sum_probs=37.9
Q ss_pred CcEEEEEecCCCCCCChhHHHHHHHHHHcC------CCceEeecCCCHHHHHHHHhhCCCCcccEEEE--CCEEE
Q 029558 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLN------APFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFF 154 (191)
Q Consensus 88 ~kVVIYsk~~~~~p~Cp~C~kak~iL~~~g------V~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI--~G~~V 154 (191)
..++|+... |||++|++....+++.. +.+..+|.++++++ .+..+...+|++++ +|+.+
T Consensus 53 ~~vlV~FyA----pWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l----~~~~~I~~~PTl~~f~~G~~v 119 (224)
T PTZ00443 53 GPWFVKFYA----PWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNL----AKRFAIKGYPTLLLFDKGKMY 119 (224)
T ss_pred CCEEEEEEC----CCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHH----HHHcCCCcCCEEEEEECCEEE
Confidence 344444444 79999999988886652 34455666655544 34446778887754 88765
No 157
>PTZ00062 glutaredoxin; Provisional
Probab=96.45 E-value=0.014 Score=49.17 Aligned_cols=63 Identities=13% Similarity=0.179 Sum_probs=42.3
Q ss_pred HHHHHhhc--CCcEEEEEecCCCCCCChhHHHHHHHHHHcCCC---ceEeecCCCHHHHHHHHhhCCCCcccEEE--ECC
Q 029558 79 STLDKVVT--GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAP---FETVNILENEMLRQGLKEYSSWPTFPQLY--IEG 151 (191)
Q Consensus 79 ~~l~~~i~--~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~---y~~vdV~~d~~~r~~Lk~~sg~~tvP~If--I~G 151 (191)
+.+++.++ ...+++|... +|||.|+.+..+|.++.-+ +..+.|+.+ .+-..+|.+. -||
T Consensus 7 ee~~~~i~~~~g~~vl~f~a----~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d----------~~V~~vPtfv~~~~g 72 (204)
T PTZ00062 7 EEKDKLIESNTGKLVLYVKS----SKEPEYEQLMDVCNALVEDFPSLEFYVVNLA----------DANNEYGVFEFYQNS 72 (204)
T ss_pred HHHHHHHhcCCCcEEEEEeC----CCCcchHHHHHHHHHHHHHCCCcEEEEEccc----------cCcccceEEEEEECC
Confidence 45555555 4567777765 7999999999999887433 344445433 5677888654 488
Q ss_pred EEEe
Q 029558 152 EFFG 155 (191)
Q Consensus 152 ~~VG 155 (191)
+.++
T Consensus 73 ~~i~ 76 (204)
T PTZ00062 73 QLIN 76 (204)
T ss_pred EEEe
Confidence 7765
No 158
>PF13728 TraF: F plasmid transfer operon protein
Probab=96.41 E-value=0.017 Score=48.73 Aligned_cols=82 Identities=11% Similarity=0.188 Sum_probs=57.1
Q ss_pred cchhhhhhhhcChHHHHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHH----HcCCCceEeecCCC-------HHH
Q 029558 63 ATTFRCLAAALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILK----SLNAPFETVNILEN-------EML 131 (191)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~----~~gV~y~~vdV~~d-------~~~ 131 (191)
......+...........++++....-+++|..+ .|++|+....+|+ ++|++...+++|.. ...
T Consensus 97 ~~a~~~~~~~~~~~~~~~l~~la~~~gL~~F~~~-----~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~ 171 (215)
T PF13728_consen 97 NFARQAYLRQREQKRDKALKQLAQKYGLFFFYRS-----DCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRP 171 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCeEEEEEEcC-----CCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCC
Confidence 3333444445566778888999999999999997 9999998877775 45888888888631 001
Q ss_pred HHHHHhhCCCCcccEEEE
Q 029558 132 RQGLKEYSSWPTFPQLYI 149 (191)
Q Consensus 132 r~~Lk~~sg~~tvP~IfI 149 (191)
-..+.+..|-..+|.+|+
T Consensus 172 ~~g~~~~l~v~~~Pal~L 189 (215)
T PF13728_consen 172 DPGQAKRLGVKVTPALFL 189 (215)
T ss_pred CHHHHHHcCCCcCCEEEE
Confidence 122333457789999987
No 159
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=96.35 E-value=0.02 Score=45.91 Aligned_cols=69 Identities=17% Similarity=0.230 Sum_probs=53.3
Q ss_pred cCCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEeechh
Q 029558 86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDI 159 (191)
Q Consensus 86 ~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~de 159 (191)
...++++|-. |+|+-|..-.+.|+..|++...++.++-..+++.|-.-....+.=+.+|||.+|-|+=.
T Consensus 24 ~~~~~~vyks-----PnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVP 92 (149)
T COG3019 24 QATEMVVYKS-----PNCGCCDEWAQHMKANGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVINGYYVEGHVP 92 (149)
T ss_pred ceeeEEEEeC-----CCCccHHHHHHHHHhCCcEEEEeecCcHHHHHHhcCCChhhccccEEEEcCEEEeccCC
Confidence 4556777765 89999999999999999998888876655655554333345567789999999999765
No 160
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=96.31 E-value=0.035 Score=46.06 Aligned_cols=55 Identities=15% Similarity=0.177 Sum_probs=36.8
Q ss_pred cEEEEEecCCCCCCChhHHHHHHHHHHcC-----CCceEeecCCCHHHHHHHHhhCCCCcccEEEE--CCEEE
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLN-----APFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFF 154 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak~iL~~~g-----V~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI--~G~~V 154 (191)
.|||+... +||+.|+.+...|+++. +.|..+|++. . ....+-..+|++++ ||+.+
T Consensus 104 ~VVV~Fya----~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~--~-----~~~~~i~~lPTlliyk~G~~v 165 (192)
T cd02988 104 WVVVHLYK----DGIPLCRLLNQHLSELARKFPDTKFVKIISTQ--C-----IPNYPDKNLPTILVYRNGDIV 165 (192)
T ss_pred EEEEEEEC----CCCchHHHHHHHHHHHHHHCCCCEEEEEEhHH--h-----HhhCCCCCCCEEEEEECCEEE
Confidence 46665544 69999999988887763 4455566532 1 23446778998755 88744
No 161
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=96.30 E-value=0.017 Score=41.95 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=33.6
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHHcC------CCceEeecCCCHHHHHHHHhhCCCCcccEEEE
Q 029558 90 VVLFMKGTKDFPQCGFSHTVVQILKSLN------APFETVNILENEMLRQGLKEYSSWPTFPQLYI 149 (191)
Q Consensus 90 VVIYsk~~~~~p~Cp~C~kak~iL~~~g------V~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI 149 (191)
++|+... +||++|++....+++.. +.+-.+|++.++ ...+.+..+...+|.+++
T Consensus 21 ~lv~f~a----~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~--~~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 21 TLVEFYA----PWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK--NKPLCGKYGVQGFPTLKV 80 (109)
T ss_pred EEEEEEC----CCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc--cHHHHHHcCCCcCCEEEE
Confidence 4444444 69999999877776652 334556666521 123444457788998866
No 162
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.26 E-value=0.03 Score=47.67 Aligned_cols=23 Identities=22% Similarity=0.624 Sum_probs=19.6
Q ss_pred cEEEEEecCCCCCCChhHHHHHHHHHHc
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVVQILKSL 116 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak~iL~~~ 116 (191)
.|++|+- |.||||++..+.|.++
T Consensus 110 ~I~vFtD-----p~CpyCkkl~~~l~~~ 132 (232)
T PRK10877 110 VITVFTD-----ITCGYCHKLHEQMKDY 132 (232)
T ss_pred EEEEEEC-----CCChHHHHHHHHHHHH
Confidence 4778877 8999999998888876
No 163
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=96.23 E-value=0.013 Score=47.53 Aligned_cols=68 Identities=18% Similarity=0.099 Sum_probs=54.1
Q ss_pred CCChhHHHHHHHHHHcCCCceEeecCC--C-HHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHHHHH
Q 029558 101 PQCGFSHTVVQILKSLNAPFETVNILE--N-EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLMDFL 168 (191)
Q Consensus 101 p~Cp~C~kak~iL~~~gV~y~~vdV~~--d-~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lke~L 168 (191)
+.|++|.+++-+|.++|++|+.+.++- . .....++.+.+...++|.+..||..+.....+..++.+..
T Consensus 6 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~~~~ 76 (210)
T TIGR01262 6 WRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEETY 76 (210)
T ss_pred CCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHHHhC
Confidence 379999999999999999999887762 1 2223457778889999999999988888888877776554
No 164
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=96.23 E-value=0.028 Score=42.29 Aligned_cols=55 Identities=15% Similarity=0.178 Sum_probs=32.7
Q ss_pred cEEEEEecCCCCCCChhHHHHHHHHHHcCC---------CceEeecCCCHHHHHHHHhhCCCCcccEEEE
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNA---------PFETVNILENEMLRQGLKEYSSWPTFPQLYI 149 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV---------~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI 149 (191)
.++|+..+ +||+.|+.....+++..- .+-.+|.+.+ ....+.+..+...+|++++
T Consensus 21 ~vvV~f~a----~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~--~~~~~~~~~~i~~~Pt~~l 84 (114)
T cd02992 21 AWLVEFYA----SWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADE--ENVALCRDFGVTGYPTLRY 84 (114)
T ss_pred eEEEEEEC----CCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccch--hhHHHHHhCCCCCCCEEEE
Confidence 45555544 699999988888766432 2333343222 1233444557788998866
No 165
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=96.18 E-value=0.05 Score=38.21 Aligned_cols=70 Identities=20% Similarity=0.178 Sum_probs=49.4
Q ss_pred EEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHh--hCCCCcccEEEECCEEEeechhhHHHHHH
Q 029558 91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKE--YSSWPTFPQLYIEGEFFGGCDITVGKLMD 166 (191)
Q Consensus 91 VIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~--~sg~~tvP~IfI~G~~VGG~del~~~lke 166 (191)
.+|.. +..+-|.+++-+|.+.|++|+.+.++..++.. .++. ......+|.+.+||..+.....+..++.+
T Consensus 3 ~Ly~~-----~~~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~-~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~~ 74 (79)
T cd03077 3 VLHYF-----NGRGRMESIRWLLAAAGVEFEEKFIESAEDLE-KLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIAG 74 (79)
T ss_pred EEEEe-----CCCChHHHHHHHHHHcCCCcEEEEeccHHHHH-hhccccCCCCCCCCEEEECCEEEeeHHHHHHHHHH
Confidence 46655 36788899999999999999988876433211 1211 22356999999999888777776666654
No 166
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=96.12 E-value=0.08 Score=43.02 Aligned_cols=46 Identities=22% Similarity=0.198 Sum_probs=28.3
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHc---CCCceEeecCCCH-HHHHHHH
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL---NAPFETVNILENE-MLRQGLK 136 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~---gV~y~~vdV~~d~-~~r~~Lk 136 (191)
.+.++++... .|||+|++....|+++ ++.+-.+++++++ +.++.++
T Consensus 68 gk~vvv~Fwa----twC~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~~~~~~~~ 117 (185)
T PRK15412 68 GKPVLLNVWA----TWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLK 117 (185)
T ss_pred CCEEEEEEEC----CCCHHHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHH
Confidence 4445444443 4999999877766554 6666667766653 3444444
No 167
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=96.10 E-value=0.0097 Score=42.56 Aligned_cols=50 Identities=22% Similarity=0.426 Sum_probs=30.5
Q ss_pred CCChhHHHHHHHHHHc--------CCCceEeecCC--CHHHHHHHHhhCCCCcccEEEE--CCEEE
Q 029558 101 PQCGFSHTVVQILKSL--------NAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYI--EGEFF 154 (191)
Q Consensus 101 p~Cp~C~kak~iL~~~--------gV~y~~vdV~~--d~~~r~~Lk~~sg~~tvP~IfI--~G~~V 154 (191)
+||++|+.....+.+. .+.+-.+|.+. ++++ ....|...+|.+++ +|+.+
T Consensus 27 ~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~----~~~~~i~~~Pt~~~~~~g~~~ 88 (104)
T cd02997 27 PWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDAL----KEEYNVKGFPTFKYFENGKFV 88 (104)
T ss_pred CCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHH----HHhCCCccccEEEEEeCCCee
Confidence 6999999887666443 13345556655 3333 33446677887744 66644
No 168
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=95.97 E-value=0.052 Score=41.34 Aligned_cols=64 Identities=20% Similarity=0.284 Sum_probs=37.5
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHc---------CCCceEeecCCCH-HH--------------------HHHHH
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL---------NAPFETVNILENE-ML--------------------RQGLK 136 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~---------gV~y~~vdV~~d~-~~--------------------r~~Lk 136 (191)
.+.++|+..+ +||+.|++....|.++ ++....++++.++ ++ ...+.
T Consensus 17 Gk~vll~F~a----twC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 92 (132)
T cd02964 17 GKTVGLYFSA----SWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLE 92 (132)
T ss_pred CCEEEEEEEC----CCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHH
Confidence 3455555554 5999999877776532 3344455665543 22 23444
Q ss_pred hhCCCCcccEEEE---CCEEE
Q 029558 137 EYSSWPTFPQLYI---EGEFF 154 (191)
Q Consensus 137 ~~sg~~tvP~IfI---~G~~V 154 (191)
+..+...+|.+++ +|+.+
T Consensus 93 ~~~~v~~iPt~~lid~~G~iv 113 (132)
T cd02964 93 KQFKVEGIPTLVVLKPDGDVV 113 (132)
T ss_pred HHcCCCCCCEEEEECCCCCEE
Confidence 5456777888874 45544
No 169
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=95.94 E-value=0.017 Score=41.17 Aligned_cols=57 Identities=18% Similarity=0.137 Sum_probs=44.2
Q ss_pred CChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHH
Q 029558 102 QCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLM 165 (191)
Q Consensus 102 ~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lk 165 (191)
..++|.++.-+|++.|++|+.+++...+. ......+|.+.+||+.|++...+..++.
T Consensus 16 ~~~~~~kv~~~L~elglpye~~~~~~~~~-------~~P~GkVP~L~~dg~vI~eS~aIl~yL~ 72 (74)
T cd03079 16 DNASCLAVQTFLKMCNLPFNVRCRANAEF-------MSPSGKVPFIRVGNQIVSEFGPIVQFVE 72 (74)
T ss_pred CCCCHHHHHHHHHHcCCCcEEEecCCccc-------cCCCCcccEEEECCEEEeCHHHHHHHHh
Confidence 56889999999999999999886532111 2223689999999999999888777664
No 170
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=95.88 E-value=0.032 Score=39.73 Aligned_cols=45 Identities=24% Similarity=0.375 Sum_probs=28.8
Q ss_pred CCChhHHHHHHHHHHc----C----CCceEeecCC-CHHHHHHHHhhCCCCcccEEEE
Q 029558 101 PQCGFSHTVVQILKSL----N----APFETVNILE-NEMLRQGLKEYSSWPTFPQLYI 149 (191)
Q Consensus 101 p~Cp~C~kak~iL~~~----g----V~y~~vdV~~-d~~~r~~Lk~~sg~~tvP~IfI 149 (191)
+||+.|++....+++. . +.+-.+|.+. ++++.+. .+..++|.+++
T Consensus 28 ~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~----~~i~~~P~~~~ 81 (105)
T cd02998 28 PWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKK----YGVSGFPTLKF 81 (105)
T ss_pred CCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHh----CCCCCcCEEEE
Confidence 6999999887777553 2 3344556555 4444333 36678998865
No 171
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=95.81 E-value=0.11 Score=42.50 Aligned_cols=81 Identities=19% Similarity=0.230 Sum_probs=43.2
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHH----HcCCCceEeecCCCHHHHHHHHh----------------hCCCCcccE
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILK----SLNAPFETVNILENEMLRQGLKE----------------YSSWPTFPQ 146 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~----~~gV~y~~vdV~~d~~~r~~Lk~----------------~sg~~tvP~ 146 (191)
.+.+++|..+ +|||.|++....+. +.++++..+..++.++.++.+++ ..+...+|.
T Consensus 74 gk~vvl~F~a----twCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~ 149 (189)
T TIGR02661 74 GRPTLLMFTA----PSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPY 149 (189)
T ss_pred CCEEEEEEEC----CCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccce
Confidence 3445554444 59999998766653 34555555553333333333332 224566897
Q ss_pred EEE---CCEEEe-echhhHHHHHHHHhhc
Q 029558 147 LYI---EGEFFG-GCDITVGKLMDFLNLL 171 (191)
Q Consensus 147 IfI---~G~~VG-G~del~~~lke~L~~l 171 (191)
.|+ +|+.+. |.-...+.++++++++
T Consensus 150 ~~lID~~G~I~~~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 150 GVLLDQDGKIRAKGLTNTREHLESLLEAD 178 (189)
T ss_pred EEEECCCCeEEEccCCCCHHHHHHHHHHH
Confidence 766 576443 2223344556666543
No 172
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.028 Score=45.94 Aligned_cols=69 Identities=14% Similarity=0.164 Sum_probs=55.2
Q ss_pred CCChhHHHHHHHHHHcCCCceEeecCCCH-HHHHHHHhhCCCCcccEEEECCE-EEeechhhHHHHHHHHh
Q 029558 101 PQCGFSHTVVQILKSLNAPFETVNILENE-MLRQGLKEYSSWPTFPQLYIEGE-FFGGCDITVGKLMDFLN 169 (191)
Q Consensus 101 p~Cp~C~kak~iL~~~gV~y~~vdV~~d~-~~r~~Lk~~sg~~tvP~IfI~G~-~VGG~del~~~lke~L~ 169 (191)
+.+|+|.++.-.|.++|++|+.+.|+-.. ....++..++....+|.+..+|- .+-....+.+++.+.-.
T Consensus 7 ~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~ 77 (211)
T COG0625 7 PTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYP 77 (211)
T ss_pred CCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCC
Confidence 47799999999999999999998887543 44566888888999999999874 67777777777765443
No 173
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=95.75 E-value=0.071 Score=42.76 Aligned_cols=59 Identities=14% Similarity=0.348 Sum_probs=37.1
Q ss_pred cCCcEEEEEecCCCCCCChhHHHHHHHHHHc----CCCceEeecCCCHH---------HHHHHHhhC---CCCcccEEEE
Q 029558 86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSL----NAPFETVNILENEM---------LRQGLKEYS---SWPTFPQLYI 149 (191)
Q Consensus 86 ~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~----gV~y~~vdV~~d~~---------~r~~Lk~~s---g~~tvP~IfI 149 (191)
...+++.|..+ |||+|++....|++. ++.+..++++++.. ..+.+.... +...+|..|+
T Consensus 50 ~~~~lvnFWAs-----WCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~L 124 (153)
T TIGR02738 50 DDYALVFFYQS-----TCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFL 124 (153)
T ss_pred CCCEEEEEECC-----CChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEE
Confidence 34567778775 999999888888654 66666666664310 012222333 4568898876
No 174
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=95.69 E-value=0.066 Score=41.54 Aligned_cols=85 Identities=15% Similarity=0.218 Sum_probs=40.1
Q ss_pred hHHHHHHHHhhcC-CcEEEEEecCCC---CCCChhHHHHHHHHHH----c--CCCceEeecCCCHHHHH---HHHh--hC
Q 029558 75 PELKSTLDKVVTG-NKVVLFMKGTKD---FPQCGFSHTVVQILKS----L--NAPFETVNILENEMLRQ---GLKE--YS 139 (191)
Q Consensus 75 ~~~~~~l~~~i~~-~kVVIYsk~~~~---~p~Cp~C~kak~iL~~----~--gV~y~~vdV~~d~~~r~---~Lk~--~s 139 (191)
++..+.+++.... .++.||..++.+ .+|||+|.++..++++ . +..+.++.|-+.++-++ .++. ..
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~ 85 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDL 85 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEccee
Confidence 3455666654433 567776666654 4899999999866544 2 23355566633221111 1222 23
Q ss_pred CCCcccEEEE--CCEEEeechh
Q 029558 140 SWPTFPQLYI--EGEFFGGCDI 159 (191)
Q Consensus 140 g~~tvP~IfI--~G~~VGG~de 159 (191)
.-..+|+++- +++...+.+.
T Consensus 86 ~l~~IPTLi~~~~~~rL~e~e~ 107 (119)
T PF06110_consen 86 KLKGIPTLIRWETGERLVEEEC 107 (119)
T ss_dssp ---SSSEEEECTSS-EEEHHHH
T ss_pred eeeecceEEEECCCCccchhhh
Confidence 5668999876 3334444443
No 175
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=95.69 E-value=0.16 Score=40.71 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=24.6
Q ss_pred cCCcEEEEEecCCCCCCChhHHHHHHHHHHc---CCCceEeecCC
Q 029558 86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSL---NAPFETVNILE 127 (191)
Q Consensus 86 ~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~---gV~y~~vdV~~ 127 (191)
+.+.+++|..+ .|||.|++....|++. ++.+-.+++++
T Consensus 62 ~gk~vll~F~a----~wC~~C~~~~p~l~~l~~~~~~vi~V~~~~ 102 (173)
T TIGR00385 62 QGKPVLLNVWA----SWCPPCRAEHPYLNELAKDGLPIVGVDYKD 102 (173)
T ss_pred CCCEEEEEEEC----CcCHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 34555555554 5999999887776555 55555566544
No 176
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.67 E-value=0.044 Score=42.94 Aligned_cols=56 Identities=16% Similarity=0.256 Sum_probs=40.9
Q ss_pred hcChHHHHHHHHhhcCCcEEEEEecCC----CCCCChhHHHHHHHHHHc------CCCceEeecCC
Q 029558 72 ALTPELKSTLDKVVTGNKVVLFMKGTK----DFPQCGFSHTVVQILKSL------NAPFETVNILE 127 (191)
Q Consensus 72 ~~~~~~~~~l~~~i~~~kVVIYsk~~~----~~p~Cp~C~kak~iL~~~------gV~y~~vdV~~ 127 (191)
...++.++.+++.-+..+|.+|..+.+ +.+|||+|.+|...+.+. ++.+..++|-+
T Consensus 10 ~g~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~ 75 (128)
T KOG3425|consen 10 PGYESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGN 75 (128)
T ss_pred chHHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecC
Confidence 445778888998878888888877766 259999999987766553 34466666644
No 177
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=95.65 E-value=0.029 Score=39.53 Aligned_cols=34 Identities=9% Similarity=0.145 Sum_probs=22.0
Q ss_pred HHHHHHHHhhcCC-cEEEEEecCCCCCCChhHHHHHHHH
Q 029558 76 ELKSTLDKVVTGN-KVVLFMKGTKDFPQCGFSHTVVQIL 113 (191)
Q Consensus 76 ~~~~~l~~~i~~~-kVVIYsk~~~~~p~Cp~C~kak~iL 113 (191)
+.++.+.++.+++ +|+|+..+ +||++|++..+.+
T Consensus 5 d~~~al~~A~~~~kpvlv~f~a----~wC~~C~~l~~~~ 39 (82)
T PF13899_consen 5 DYEEALAEAKKEGKPVLVDFGA----DWCPPCKKLEREV 39 (82)
T ss_dssp SHHHHHHHHHHHTSEEEEEEET----TTTHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCCCEEEEEEC----CCCHhHHHHHHHH
Confidence 3445555555554 56555555 6999999887665
No 178
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=95.60 E-value=0.11 Score=40.67 Aligned_cols=79 Identities=20% Similarity=0.374 Sum_probs=42.5
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHc-------CCCceEeecCCCHH-HH-----------------HHHHhhCCC
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILENEM-LR-----------------QGLKEYSSW 141 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~-------gV~y~~vdV~~d~~-~r-----------------~~Lk~~sg~ 141 (191)
.+.++|+... +||++|++....|.+. ++.+-.++.+++++ .+ ..+.+..|.
T Consensus 61 ~k~~~l~f~a----~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 136 (173)
T PRK03147 61 GKGVFLNFWG----TWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGV 136 (173)
T ss_pred CCEEEEEEEC----CcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCC
Confidence 3445444444 6999999866555443 34445555554432 22 233344566
Q ss_pred CcccEEE-E--CCEEE----eechhhHHHHHHHHhhc
Q 029558 142 PTFPQLY-I--EGEFF----GGCDITVGKLMDFLNLL 171 (191)
Q Consensus 142 ~tvP~If-I--~G~~V----GG~del~~~lke~L~~l 171 (191)
..+|.+| + +|+.+ |+..+ +.+.+.|+++
T Consensus 137 ~~~P~~~lid~~g~i~~~~~g~~~~--~~l~~~l~~~ 171 (173)
T PRK03147 137 GPLPTTFLIDKDGKVVKVITGEMTE--EQLEEYLEKI 171 (173)
T ss_pred CCcCeEEEECCCCcEEEEEeCCCCH--HHHHHHHHHh
Confidence 7789765 4 47644 33333 4455566554
No 179
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=95.54 E-value=0.076 Score=40.04 Aligned_cols=64 Identities=22% Similarity=0.307 Sum_probs=38.0
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHc---------CCCceEeecCCCHH-H-------------------HHHHHh
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL---------NAPFETVNILENEM-L-------------------RQGLKE 137 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~---------gV~y~~vdV~~d~~-~-------------------r~~Lk~ 137 (191)
.+.|+||... +||+.|++....|.+. ++.+..++++.+.+ . ...+.+
T Consensus 18 gk~vll~Fwa----~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (131)
T cd03009 18 GKTVGLYFSA----SWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNR 93 (131)
T ss_pred CcEEEEEEEC----CCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHH
Confidence 3456666554 5999999877776543 34444556655432 1 123444
Q ss_pred hCCCCcccEEEE---CCEEE
Q 029558 138 YSSWPTFPQLYI---EGEFF 154 (191)
Q Consensus 138 ~sg~~tvP~IfI---~G~~V 154 (191)
..|...+|.+++ +|+.+
T Consensus 94 ~~~v~~~P~~~lid~~G~i~ 113 (131)
T cd03009 94 TFKIEGIPTLIILDADGEVV 113 (131)
T ss_pred HcCCCCCCEEEEECCCCCEE
Confidence 557777888766 56544
No 180
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=95.51 E-value=0.051 Score=38.08 Aligned_cols=57 Identities=23% Similarity=0.179 Sum_probs=44.8
Q ss_pred CChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHHH
Q 029558 102 QCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLMD 166 (191)
Q Consensus 102 ~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lke 166 (191)
..|+|-++..+|+-.|++|+.+.. .++ ..+....+|.|..+|+.|+|++.+++.+++
T Consensus 15 ~sp~clk~~~~Lr~~~~~~~v~~~-~n~-------~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~ 71 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPLKVVPS-NNP-------WRSPTGKLPALLTSGTKISGPEKIIEYLRK 71 (73)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEec-CCC-------CCCCCCccCEEEECCEEecChHHHHHHHHH
Confidence 479999999999999999976533 221 123355799999999999999998887753
No 181
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.019 Score=47.98 Aligned_cols=61 Identities=20% Similarity=0.179 Sum_probs=44.0
Q ss_pred CChhHHHHHHHHHHcCCCceEeecCC-CHHHHHHHHhhCCCCcccEEEE-CCEEEeechhhHHHHH
Q 029558 102 QCGFSHTVVQILKSLNAPFETVNILE-NEMLRQGLKEYSSWPTFPQLYI-EGEFFGGCDITVGKLM 165 (191)
Q Consensus 102 ~Cp~C~kak~iL~~~gV~y~~vdV~~-d~~~r~~Lk~~sg~~tvP~IfI-~G~~VGG~del~~~lk 165 (191)
.||||.+|+-++.-.|++++..-++. |++. .. .+-|...||.+.- +|+.++-.=+++.++.
T Consensus 8 HCPfcvrarmi~Gl~nipve~~vL~nDDe~T--p~-rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d 70 (215)
T COG2999 8 HCPFCVRARMIFGLKNIPVELHVLLNDDEET--PI-RMIGQKQVPILQKEDGRAMPESLDIVHYVD 70 (215)
T ss_pred cChHHHHHHHHhhccCCChhhheeccCcccC--hh-hhhcccccceEEccccccchhhhHHHHHHH
Confidence 89999999999999999987654433 2222 22 2448999999877 6788876555555543
No 182
>PRK10357 putative glutathione S-transferase; Provisional
Probab=95.47 E-value=0.046 Score=44.16 Aligned_cols=65 Identities=23% Similarity=0.284 Sum_probs=48.3
Q ss_pred CCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEE-CCEEEeechhhHHHHHH
Q 029558 101 PQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYI-EGEFFGGCDITVGKLMD 166 (191)
Q Consensus 101 p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI-~G~~VGG~del~~~lke 166 (191)
+.||++++++-+|++.|++|+.++++.... ...+.+++...++|.+.. ||..+-....+..++.+
T Consensus 7 ~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~-~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~ 72 (202)
T PRK10357 7 YTSPFVRKISILLLEKGITFEFVNELPYNA-DNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIEL 72 (202)
T ss_pred CCCchHHHHHHHHHHcCCCCeEEecCCCCC-chhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHHH
Confidence 489999999999999999999987764211 123455678889999985 66666666666666553
No 183
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=95.38 E-value=0.025 Score=49.69 Aligned_cols=79 Identities=25% Similarity=0.384 Sum_probs=58.7
Q ss_pred HhhcCCcEEEEEec-CCCCCC-ChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEeechhh
Q 029558 83 KVVTGNKVVLFMKG-TKDFPQ-CGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDIT 160 (191)
Q Consensus 83 ~~i~~~kVVIYsk~-~~~~p~-Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del 160 (191)
+-.+...|.+|.-. ++..|+ .|||-++.-+|+..+++||.++-. ++.++...++|-|-.||++|.+.+.+
T Consensus 39 ~d~kkD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~--------~~~rSr~G~lPFIELNGe~iaDS~~I 110 (281)
T KOG4244|consen 39 TDYKKDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCS--------LKRRSRNGTLPFIELNGEHIADSDLI 110 (281)
T ss_pred hccccCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceecccc--------ceeeccCCCcceEEeCCeeccccHHH
Confidence 44555667777542 111222 689999999999999999987742 33566788999999999999999998
Q ss_pred HHHHHHHHh
Q 029558 161 VGKLMDFLN 169 (191)
Q Consensus 161 ~~~lke~L~ 169 (191)
...+++.++
T Consensus 111 ~~~L~~hf~ 119 (281)
T KOG4244|consen 111 EDRLRKHFK 119 (281)
T ss_pred HHHHHHHcC
Confidence 887775443
No 184
>PLN02395 glutathione S-transferase
Probab=95.34 E-value=0.084 Score=42.94 Aligned_cols=73 Identities=10% Similarity=-0.008 Sum_probs=55.7
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCC--HHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHHHH
Q 029558 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLMDF 167 (191)
Q Consensus 90 VVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d--~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lke~ 167 (191)
+.+|.. +.+ .+.+++-+|.+.|++|+.+.++-. ....+++.+.+-..++|.+..+|..+.....+.+++.+.
T Consensus 3 ~~ly~~-----~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~~~ 76 (215)
T PLN02395 3 LKVYGP-----AFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAEK 76 (215)
T ss_pred EEEEcC-----CcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHHH
Confidence 577864 354 479999999999999998877532 223345777888899999999998888888888887754
Q ss_pred H
Q 029558 168 L 168 (191)
Q Consensus 168 L 168 (191)
.
T Consensus 77 ~ 77 (215)
T PLN02395 77 Y 77 (215)
T ss_pred c
Confidence 3
No 185
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=95.18 E-value=0.069 Score=37.98 Aligned_cols=44 Identities=18% Similarity=0.348 Sum_probs=27.5
Q ss_pred CCChhHHHHHHHHHHcC--------CCceEeecCCCHHHHHHHHhhCCCCcccEEEE
Q 029558 101 PQCGFSHTVVQILKSLN--------APFETVNILENEMLRQGLKEYSSWPTFPQLYI 149 (191)
Q Consensus 101 p~Cp~C~kak~iL~~~g--------V~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI 149 (191)
+||++|+.....+++.. +.+..+|.+.+ +. ....+..++|.+++
T Consensus 28 ~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~----~~~~~~~~~Pt~~~ 79 (104)
T cd02995 28 PWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DV----PSEFVVDGFPTILF 79 (104)
T ss_pred CCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hh----hhhccCCCCCEEEE
Confidence 69999999888776653 33444565543 22 22224478897765
No 186
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=95.14 E-value=0.11 Score=42.55 Aligned_cols=72 Identities=13% Similarity=0.139 Sum_probs=51.9
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCC--CHHHHHHHHhhCCCCcccEEEE-----CCE--EEeechhh
Q 029558 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYI-----EGE--FFGGCDIT 160 (191)
Q Consensus 90 VVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~--d~~~r~~Lk~~sg~~tvP~IfI-----~G~--~VGG~del 160 (191)
+.+|.. ..++|.++.-+|+++|++|+.++|+- ++....++++++-...+|.+.. ||+ .+-....+
T Consensus 2 ~~Ly~~------~~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI 75 (215)
T PRK13972 2 IDLYFA------PTPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAI 75 (215)
T ss_pred eEEEEC------CCCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHH
Confidence 457755 36889999999999999999887753 2223355777888899999987 442 45666666
Q ss_pred HHHHHHH
Q 029558 161 VGKLMDF 167 (191)
Q Consensus 161 ~~~lke~ 167 (191)
.+++.+.
T Consensus 76 ~~YL~~~ 82 (215)
T PRK13972 76 LLYLAEK 82 (215)
T ss_pred HHHHHHh
Confidence 6666543
No 187
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=95.06 E-value=0.14 Score=46.08 Aligned_cols=66 Identities=20% Similarity=0.360 Sum_probs=39.8
Q ss_pred HHHHhhcCCc-EEEEEecCCCCCCChhHHHHHHHHHH-------cC--CCceEeecCCCHHHHHHHHhhCCCCcccEEEE
Q 029558 80 TLDKVVTGNK-VVLFMKGTKDFPQCGFSHTVVQILKS-------LN--APFETVNILENEMLRQGLKEYSSWPTFPQLYI 149 (191)
Q Consensus 80 ~l~~~i~~~k-VVIYsk~~~~~p~Cp~C~kak~iL~~-------~g--V~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI 149 (191)
.++++++.++ ++|+..+ |||++|++....+.+ .+ +.+-.+|.+.+.++ .+..+...+|++++
T Consensus 10 ~~~~~i~~~~~~~v~f~a----~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l----~~~~~i~~~Pt~~~ 81 (462)
T TIGR01130 10 NFDDFIKSHEFVLVEFYA----PWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDL----AQKYGVSGYPTLKI 81 (462)
T ss_pred HHHHHHhcCCCEEEEEEC----CCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHH----HHhCCCccccEEEE
Confidence 3444455554 4444443 799999988766543 23 55666777666544 33446778887744
Q ss_pred --CCEE
Q 029558 150 --EGEF 153 (191)
Q Consensus 150 --~G~~ 153 (191)
+|+.
T Consensus 82 ~~~g~~ 87 (462)
T TIGR01130 82 FRNGED 87 (462)
T ss_pred EeCCcc
Confidence 6654
No 188
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=95.03 E-value=0.086 Score=45.95 Aligned_cols=79 Identities=13% Similarity=0.254 Sum_probs=55.8
Q ss_pred hhhhhhhcChHHHHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHH----HHcCCCceEeecCCC--HHH-----HHH
Q 029558 66 FRCLAAALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQIL----KSLNAPFETVNILEN--EML-----RQG 134 (191)
Q Consensus 66 ~~~~~~~~~~~~~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL----~~~gV~y~~vdV~~d--~~~-----r~~ 134 (191)
...+...-..+.++.++++.+...+++|..+ .||+|++...+| +++|++...+++|.. +.. -..
T Consensus 130 ~~~~~~~~~~~~~~~i~~la~~~gL~fFy~~-----~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~g 204 (256)
T TIGR02739 130 RQVYLQLEKEQKEKAIQQLSQSYGLFFFYRG-----KSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSG 204 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHhceeEEEEECC-----CCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChH
Confidence 3333345556678889999999999999997 999999887777 566888888888753 110 012
Q ss_pred HHhhCCCCcccEEEE
Q 029558 135 LKEYSSWPTFPQLYI 149 (191)
Q Consensus 135 Lk~~sg~~tvP~IfI 149 (191)
+.+..|...+|.+|+
T Consensus 205 qa~~l~v~~~Pal~L 219 (256)
T TIGR02739 205 QAQHLGVKYFPALYL 219 (256)
T ss_pred HHHhcCCccCceEEE
Confidence 233346778999887
No 189
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=94.93 E-value=0.11 Score=48.85 Aligned_cols=59 Identities=12% Similarity=0.183 Sum_probs=35.6
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHc-------CCCceEeecCCCHHHHHHHHhhCCCCcccEEE--ECC
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILENEMLRQGLKEYSSWPTFPQLY--IEG 151 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~-------gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~If--I~G 151 (191)
...++|+... |||++|+.....|+++ ++.+-.+|++.+.. +......+...+|++. .+|
T Consensus 371 ~k~VLV~FyA----pWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~--~~~~~~~~I~~~PTii~Fk~g 438 (463)
T TIGR00424 371 KEAWLVVLYA----PWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK--EFAKQELQLGSFPTILFFPKH 438 (463)
T ss_pred CCeEEEEEEC----CCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc--HHHHHHcCCCccceEEEEECC
Confidence 3345554444 7999999998888665 24466677776531 1122233556777764 465
No 190
>PTZ00102 disulphide isomerase; Provisional
Probab=94.92 E-value=0.18 Score=46.05 Aligned_cols=48 Identities=21% Similarity=0.341 Sum_probs=30.4
Q ss_pred CCChhHHHHHHHHHH-------c--CCCceEeecCCCHHHHHHHHhhCCCCcccEEEE--CCE
Q 029558 101 PQCGFSHTVVQILKS-------L--NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGE 152 (191)
Q Consensus 101 p~Cp~C~kak~iL~~-------~--gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI--~G~ 152 (191)
|||++|++....+.+ . ++.+-.+|.+.+.++.+ ..+...+|.+++ +|+
T Consensus 59 ~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~----~~~i~~~Pt~~~~~~g~ 117 (477)
T PTZ00102 59 PWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQ----EFGVRGYPTIKFFNKGN 117 (477)
T ss_pred CCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHH----hcCCCcccEEEEEECCc
Confidence 799999987665443 2 24566667766655433 346677887744 554
No 191
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=0.1 Score=45.72 Aligned_cols=94 Identities=18% Similarity=0.197 Sum_probs=63.4
Q ss_pred HHHHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHcCCC-----ceEeecCCCHHHHHHHHhhCCCCcccEE--E
Q 029558 76 ELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAP-----FETVNILENEMLRQGLKEYSSWPTFPQL--Y 148 (191)
Q Consensus 76 ~~~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~-----y~~vdV~~d~~~r~~Lk~~sg~~tvP~I--f 148 (191)
+.+.++...-...-+|=|+.+ ||+.|+++-.++..+.-. |-.+||++-.. ...-.|....|+. |
T Consensus 11 df~~~ls~ag~k~v~Vdfta~-----wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~----taa~~gV~amPTFiff 81 (288)
T KOG0908|consen 11 DFQRELSAAGGKLVVVDFTAS-----WCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRG----TAATNGVNAMPTFIFF 81 (288)
T ss_pred HHHHhhhccCceEEEEEEEec-----ccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhc----hhhhcCcccCceEEEE
Confidence 334444433333456667775 999999999999988544 45677754222 2334477777765 6
Q ss_pred ECCEE---EeechhhHHHHHHHHhhcCcCCcceEE
Q 029558 149 IEGEF---FGGCDITVGKLMDFLNLLNFSSTIWLV 180 (191)
Q Consensus 149 I~G~~---VGG~del~~~lke~L~~lg~~~~~wl~ 180 (191)
.||.. +-|.|+ ..+++..++.-..++.|-+
T Consensus 82 ~ng~kid~~qGAd~--~gLe~kv~~~~stsaa~~~ 114 (288)
T KOG0908|consen 82 RNGVKIDQIQGADA--SGLEEKVAKYASTSAASSG 114 (288)
T ss_pred ecCeEeeeecCCCH--HHHHHHHHHHhccCccccc
Confidence 68864 568888 7777778887778888874
No 192
>PLN02309 5'-adenylylsulfate reductase
Probab=94.58 E-value=0.13 Score=48.20 Aligned_cols=56 Identities=13% Similarity=0.282 Sum_probs=34.1
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHc-------CCCceEeecC-CCHHHHHHHHhhCCCCcccEEEE
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNIL-ENEMLRQGLKEYSSWPTFPQLYI 149 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~-------gV~y~~vdV~-~d~~~r~~Lk~~sg~~tvP~IfI 149 (191)
...++|+... |||++|+.+...++++ ++.+-.+|++ .+.++ .++..+...+|+|++
T Consensus 365 ~k~vlV~FyA----pWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~l---a~~~~~I~~~PTil~ 428 (457)
T PLN02309 365 KEPWLVVLYA----PWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEF---AKQELQLGSFPTILL 428 (457)
T ss_pred CCeEEEEEEC----CCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHH---HHhhCCCceeeEEEE
Confidence 3444444443 7999999988888665 2445566666 33332 222346678888754
No 193
>PRK11752 putative S-transferase; Provisional
Probab=94.48 E-value=0.17 Score=43.48 Aligned_cols=77 Identities=17% Similarity=0.147 Sum_probs=56.3
Q ss_pred hcCCcEEEEEecCCCCCCChhHHHHHHHHHHc------CCCceEeecC--CCHHHHHHHHhhCCCCcccEEEECC----E
Q 029558 85 VTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNIL--ENEMLRQGLKEYSSWPTFPQLYIEG----E 152 (191)
Q Consensus 85 i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~------gV~y~~vdV~--~d~~~r~~Lk~~sg~~tvP~IfI~G----~ 152 (191)
...+.+.+|+. .+++|++|.-+|+++ |++|+.+.|+ ..+....++.+..-..++|.+..++ .
T Consensus 40 ~~~~~~~Ly~~------~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~ 113 (264)
T PRK11752 40 VGKHPLQLYSL------GTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPI 113 (264)
T ss_pred CCCCCeEEecC------CCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCe
Confidence 34568999976 699999999999997 8889887664 2222344566787889999998853 4
Q ss_pred EEeechhhHHHHHHH
Q 029558 153 FFGGCDITVGKLMDF 167 (191)
Q Consensus 153 ~VGG~del~~~lke~ 167 (191)
.+.....+..++.+.
T Consensus 114 ~L~ES~AIl~YL~~~ 128 (264)
T PRK11752 114 RVFESGAILLYLAEK 128 (264)
T ss_pred EEEcHHHHHHHHHHh
Confidence 566666776766543
No 194
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=94.47 E-value=0.24 Score=36.94 Aligned_cols=69 Identities=14% Similarity=0.123 Sum_probs=37.8
Q ss_pred EEEEecCCCCCCChhH------HHHHHHHHHc--------CCCceEeecCCCH---HHHHHHHhhC-CCCcccEEEECCE
Q 029558 91 VLFMKGTKDFPQCGFS------HTVVQILKSL--------NAPFETVNILENE---MLRQGLKEYS-SWPTFPQLYIEGE 152 (191)
Q Consensus 91 VIYsk~~~~~p~Cp~C------~kak~iL~~~--------gV~y~~vdV~~d~---~~r~~Lk~~s-g~~tvP~IfI~G~ 152 (191)
+||+.. --|.-| +...+||+.. .+.|+++||...+ ..++...++- .---+|.|.+||+
T Consensus 1 ~VYGAe----~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~e 76 (93)
T PF07315_consen 1 VVYGAE----VICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDE 76 (93)
T ss_dssp EEEE-S----S--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTE
T ss_pred Cccccc----ccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCE
Confidence 466654 346555 5677777654 3557889997632 2333333332 2345799999999
Q ss_pred EEe-echhhHHH
Q 029558 153 FFG-GCDITVGK 163 (191)
Q Consensus 153 ~VG-G~del~~~ 163 (191)
.|| |.-.|++-
T Consensus 77 iV~EGnp~LK~I 88 (93)
T PF07315_consen 77 IVAEGNPQLKDI 88 (93)
T ss_dssp EEEESS--HHHH
T ss_pred EEecCCccHHHH
Confidence 998 44444443
No 195
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=94.38 E-value=0.22 Score=36.95 Aligned_cols=73 Identities=11% Similarity=0.146 Sum_probs=43.4
Q ss_pred HHHHHHHHhhcCC-cEEEEEecCCCCCCChhHHHHHH-HHHHcCC------CceEe--ecCCCHHHHHHHHhhCCCCccc
Q 029558 76 ELKSTLDKVVTGN-KVVLFMKGTKDFPQCGFSHTVVQ-ILKSLNA------PFETV--NILENEMLRQGLKEYSSWPTFP 145 (191)
Q Consensus 76 ~~~~~l~~~i~~~-kVVIYsk~~~~~p~Cp~C~kak~-iL~~~gV------~y~~v--dV~~d~~~r~~Lk~~sg~~tvP 145 (191)
+.++.++.+.+++ .++||..+ +||++|++..+ .|.+..| .|..+ |+.+ ++. ..+....+...+|
T Consensus 5 s~~~a~~~Ak~~~K~llv~~~~----~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~-~e~-~~~~~~~~~~~~P 78 (114)
T cd02958 5 SFEDAKQEAKSEKKWLLVYLQS----EDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDS-SEG-QRFLQSYKVDKYP 78 (114)
T ss_pred CHHHHHHHHHhhCceEEEEEec----CCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCC-ccH-HHHHHHhCccCCC
Confidence 4456666666655 46777776 79999997643 4543322 24433 4443 333 3455556778899
Q ss_pred EEEE----CCEEE
Q 029558 146 QLYI----EGEFF 154 (191)
Q Consensus 146 ~IfI----~G~~V 154 (191)
.+++ +|+.+
T Consensus 79 ~~~~i~~~~g~~l 91 (114)
T cd02958 79 HIAIIDPRTGEVL 91 (114)
T ss_pred eEEEEeCccCcEe
Confidence 8855 56544
No 196
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.28 E-value=0.14 Score=42.11 Aligned_cols=32 Identities=13% Similarity=0.331 Sum_probs=21.2
Q ss_pred HHHHHHHhhcCCc--EEEEEecCCCCCCChhHHHHHHHH
Q 029558 77 LKSTLDKVVTGNK--VVLFMKGTKDFPQCGFSHTVVQIL 113 (191)
Q Consensus 77 ~~~~l~~~i~~~k--VVIYsk~~~~~p~Cp~C~kak~iL 113 (191)
+.+..+.+...++ +++|.. ++|+||.+.++-+
T Consensus 31 ~~~d~ksi~~~~Kylllmfes-----~~C~yC~~~KKd~ 64 (182)
T COG2143 31 VFDDNKSISPNDKYLLLMFES-----NGCSYCERFKKDL 64 (182)
T ss_pred hHHHHHhcCccCcEEEEEEcC-----CCChHHHHHHHhh
Confidence 3455555555554 566666 5999999887644
No 197
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=94.27 E-value=0.18 Score=41.21 Aligned_cols=31 Identities=19% Similarity=0.397 Sum_probs=22.1
Q ss_pred CcEEEEEecCCCCCCChhHHHHHHHHHH--cCCCceEe
Q 029558 88 NKVVLFMKGTKDFPQCGFSHTVVQILKS--LNAPFETV 123 (191)
Q Consensus 88 ~kVVIYsk~~~~~p~Cp~C~kak~iL~~--~gV~y~~v 123 (191)
..|++|+. |.||||+++.+.|.+ .++.+..+
T Consensus 79 ~~i~~f~D-----~~Cp~C~~~~~~l~~~~~~v~v~~~ 111 (197)
T cd03020 79 RVVYVFTD-----PDCPYCRKLEKELKPNADGVTVRIF 111 (197)
T ss_pred EEEEEEEC-----CCCccHHHHHHHHhhccCceEEEEE
Confidence 45677766 799999999999984 34444443
No 198
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.07 E-value=0.12 Score=43.43 Aligned_cols=73 Identities=19% Similarity=0.182 Sum_probs=51.0
Q ss_pred CcEEEEEecCCCCCCChh-HHHHHHHHHHcCCCceEeec--CCC-HHHHHHHHhhCCCCcccEEEECCEEEeechhhHHH
Q 029558 88 NKVVLFMKGTKDFPQCGF-SHTVVQILKSLNAPFETVNI--LEN-EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGK 163 (191)
Q Consensus 88 ~kVVIYsk~~~~~p~Cp~-C~kak~iL~~~gV~y~~vdV--~~d-~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~ 163 (191)
.+-++|+. |=.- +.+|+=.|.-.|++|+++-| ... .+.-.++++..-..+||.+.|||..+-..-.++++
T Consensus 4 ~KpiLYSY------WrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~Y 77 (217)
T KOG0868|consen 4 AKPILYSY------WRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEY 77 (217)
T ss_pred ccchhhhh------hcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHH
Confidence 35667765 4333 35777788888888777654 343 33344788888899999999999888776666666
Q ss_pred HHH
Q 029558 164 LMD 166 (191)
Q Consensus 164 lke 166 (191)
++|
T Consensus 78 LeE 80 (217)
T KOG0868|consen 78 LEE 80 (217)
T ss_pred HHh
Confidence 653
No 199
>PTZ00057 glutathione s-transferase; Provisional
Probab=94.02 E-value=0.43 Score=38.97 Aligned_cols=76 Identities=17% Similarity=0.229 Sum_probs=56.2
Q ss_pred cEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHH-H--HHHHH--hhCCCCcccEEEECCEEEeechhhHHH
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEM-L--RQGLK--EYSSWPTFPQLYIEGEFFGGCDITVGK 163 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~-~--r~~Lk--~~sg~~tvP~IfI~G~~VGG~del~~~ 163 (191)
++++|... .-+.+++++-+|+..|++|+.+.+.+..+ . .+.++ ..+-...+|.+.+||..+.....+..+
T Consensus 4 ~~~L~y~~-----~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~Y 78 (205)
T PTZ00057 4 EIVLYYFD-----ARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRY 78 (205)
T ss_pred ceEEEecC-----CCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 46777663 57778999999999999999987754221 1 11222 356788999999999888888888888
Q ss_pred HHHHHh
Q 029558 164 LMDFLN 169 (191)
Q Consensus 164 lke~L~ 169 (191)
+.+...
T Consensus 79 La~~~~ 84 (205)
T PTZ00057 79 LSKKYK 84 (205)
T ss_pred HHHHcC
Confidence 776654
No 200
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=93.91 E-value=0.31 Score=38.04 Aligned_cols=46 Identities=22% Similarity=0.282 Sum_probs=34.4
Q ss_pred HHHHHHHHcCCCceEeecCCC-------HHHHHHHHhhCCCCcccEEEECCEEE
Q 029558 108 TVVQILKSLNAPFETVNILEN-------EMLRQGLKEYSSWPTFPQLYIEGEFF 154 (191)
Q Consensus 108 kak~iL~~~gV~y~~vdV~~d-------~~~r~~Lk~~sg~~tvP~IfI~G~~V 154 (191)
.+.++|++.|++.+.+++..+ +.+++.|+.. |...+|.++|||+.+
T Consensus 31 ~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~-G~e~LPitlVdGeiv 83 (123)
T PF06953_consen 31 ADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTE-GAEALPITLVDGEIV 83 (123)
T ss_dssp HHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH--GGG-SEEEETTEEE
T ss_pred HHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHc-CcccCCEEEECCEEE
Confidence 678889999999999999764 5566666544 899999999999976
No 201
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=93.68 E-value=0.19 Score=35.93 Aligned_cols=52 Identities=21% Similarity=0.211 Sum_probs=35.1
Q ss_pred cEEEEEecCCCCCCChhHHHHHHHHHHcC------CCceEeecCCCHHHHHHHHhhCCCC--cccEEEE
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLN------APFETVNILENEMLRQGLKEYSSWP--TFPQLYI 149 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak~iL~~~g------V~y~~vdV~~d~~~r~~Lk~~sg~~--tvP~IfI 149 (191)
-+++|.. +||+.|+.++..|++.. +.|-.+|+++++++ .+..|-. .+|++.+
T Consensus 15 ~~~~f~~-----~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~----~~~~~i~~~~~P~~~~ 74 (103)
T cd02982 15 LLVLFYN-----KDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRH----LEYFGLKEEDLPVIAI 74 (103)
T ss_pred EEEEEEc-----CChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHH----HHHcCCChhhCCEEEE
Confidence 4455554 59999999999998753 45666677654443 3344555 8998876
No 202
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=93.65 E-value=0.25 Score=42.94 Aligned_cols=73 Identities=19% Similarity=0.317 Sum_probs=51.4
Q ss_pred hcChHHHHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHH----HcCCCceEeecCC--CHHH-----HHHHHhhCC
Q 029558 72 ALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILK----SLNAPFETVNILE--NEML-----RQGLKEYSS 140 (191)
Q Consensus 72 ~~~~~~~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~----~~gV~y~~vdV~~--d~~~-----r~~Lk~~sg 140 (191)
.-..+.++.++++.+...+++|..+ .||||++.-.+|+ ++|++...+.+|. .+.. -....+..|
T Consensus 129 ~~~~~~~~~i~~la~~~GL~fFy~s-----~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~ 203 (248)
T PRK13703 129 ADQAQQRQAIAKLAEHYGLMFFYRG-----QDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLG 203 (248)
T ss_pred HHHHHHHHHHHHHHhcceEEEEECC-----CCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcC
Confidence 4445667788899999999999997 9999998777664 4588877777764 1111 011223446
Q ss_pred CCcccEEEE
Q 029558 141 WPTFPQLYI 149 (191)
Q Consensus 141 ~~tvP~IfI 149 (191)
...+|.+|+
T Consensus 204 v~~~PAl~L 212 (248)
T PRK13703 204 VKYFPALML 212 (248)
T ss_pred CcccceEEE
Confidence 778999887
No 203
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=93.54 E-value=0.34 Score=35.22 Aligned_cols=57 Identities=19% Similarity=0.422 Sum_probs=30.0
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHcCCC----ceEeec-CCCH-HHHHHHHhhCCCCcccEEE
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAP----FETVNI-LENE-MLRQGLKEYSSWPTFPQLY 148 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~----y~~vdV-~~d~-~~r~~Lk~~sg~~tvP~If 148 (191)
.+.++|+..+ +|||.|++....|+++.-. ...+-+ +.+. +.++.+++ .+...+|.++
T Consensus 21 gk~vvl~F~~----~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~-~~~~~~p~~~ 83 (114)
T cd02967 21 GRPTLLFFLS----PTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKK-HGLEAFPYVL 83 (114)
T ss_pred CCeEEEEEEC----CCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHH-hCCCCCcEEe
Confidence 3445444444 6999999887777664211 222222 2333 33333443 3444577654
No 204
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=93.44 E-value=0.18 Score=43.44 Aligned_cols=31 Identities=16% Similarity=0.375 Sum_probs=21.7
Q ss_pred cEEEEEecCCCCCCChhHHHHHHHHHHc---C-CCceEee
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVVQILKSL---N-APFETVN 124 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak~iL~~~---g-V~y~~vd 124 (191)
.|++|+- |.||||++..+.+.++ | |.+.++.
T Consensus 120 ~I~vFtD-----p~CpyC~kl~~~l~~~~~~g~V~v~~ip 154 (251)
T PRK11657 120 IVYVFAD-----PNCPYCKQFWQQARPWVDSGKVQLRHIL 154 (251)
T ss_pred EEEEEEC-----CCChhHHHHHHHHHHHhhcCceEEEEEe
Confidence 4777777 8999999997776542 3 5555554
No 205
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=93.43 E-value=0.41 Score=33.21 Aligned_cols=60 Identities=15% Similarity=0.135 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHcCCCceEeecC--CCHHHHHHHHhhCCC-CcccEEEEC-CEEEeechhhHHHH
Q 029558 105 FSHTVVQILKSLNAPFETVNIL--ENEMLRQGLKEYSSW-PTFPQLYIE-GEFFGGCDITVGKL 164 (191)
Q Consensus 105 ~C~kak~iL~~~gV~y~~vdV~--~d~~~r~~Lk~~sg~-~tvP~IfI~-G~~VGG~del~~~l 164 (191)
.+.+++-+|.+.|++|+.+.++ ..+...+++++.... ..+|.+..+ |..+-....+..++
T Consensus 11 ~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YL 74 (76)
T PF02798_consen 11 RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYL 74 (76)
T ss_dssp TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHH
T ss_pred chHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHh
Confidence 7899999999999999887665 333333666666666 899999999 88887766655554
No 206
>PRK10542 glutathionine S-transferase; Provisional
Probab=93.43 E-value=0.24 Score=39.68 Aligned_cols=64 Identities=14% Similarity=0.093 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHcCCCceEeecCCC--H-HHHHHHHhhCCCCcccEEEE-CCEEEeechhhHHHHHHHH
Q 029558 105 FSHTVVQILKSLNAPFETVNILEN--E-MLRQGLKEYSSWPTFPQLYI-EGEFFGGCDITVGKLMDFL 168 (191)
Q Consensus 105 ~C~kak~iL~~~gV~y~~vdV~~d--~-~~r~~Lk~~sg~~tvP~IfI-~G~~VGG~del~~~lke~L 168 (191)
.+.++.-+|.+.|++|+.+.|+-. + ...+++.+++-...+|++.+ ||..+-....+.+++.+..
T Consensus 10 ~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~~ 77 (201)
T PRK10542 10 CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADSV 77 (201)
T ss_pred HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHHhC
Confidence 467888899999999998876532 1 12245777888899999987 6677877777777766443
No 207
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=93.39 E-value=0.83 Score=34.80 Aligned_cols=68 Identities=15% Similarity=0.295 Sum_probs=47.0
Q ss_pred hhcCCcEEEEEecCCCCCCChhHHHHHHHHHHc------CCCceEeecCCCHHHHHHHHhhCCC-CcccEEEE--CCEEE
Q 029558 84 VVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSW-PTFPQLYI--EGEFF 154 (191)
Q Consensus 84 ~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~------gV~y~~vdV~~d~~~r~~Lk~~sg~-~tvP~IfI--~G~~V 154 (191)
.-...+++||--+ ..||=+..|.+-|++. ++++-++||.++.++-.++.+.+|- -.=||+++ ||+.+
T Consensus 16 ~S~~~~~~iFKHS----t~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili~~g~~v 91 (105)
T PF11009_consen 16 ESKEKPVLIFKHS----TRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILIKNGKVV 91 (105)
T ss_dssp H---SEEEEEEE-----TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEEETTEEE
T ss_pred hcccCcEEEEEeC----CCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEEECCEEE
Confidence 3446789999887 3799999998877654 2889999999999999999888873 45688866 88876
Q ss_pred e
Q 029558 155 G 155 (191)
Q Consensus 155 G 155 (191)
-
T Consensus 92 ~ 92 (105)
T PF11009_consen 92 W 92 (105)
T ss_dssp E
T ss_pred E
Confidence 3
No 208
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=93.39 E-value=0.61 Score=34.76 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=18.1
Q ss_pred CCChhHHHHHHHHHHc----CCCceEeecCC
Q 029558 101 PQCGFSHTVVQILKSL----NAPFETVNILE 127 (191)
Q Consensus 101 p~Cp~C~kak~iL~~~----gV~y~~vdV~~ 127 (191)
+|||.|.+....|+++ ++.+..+++++
T Consensus 35 ~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~~ 65 (127)
T cd03010 35 SWCAPCREEHPVLMALARQGRVPIYGINYKD 65 (127)
T ss_pred CcCHHHHHHHHHHHHHHHhcCcEEEEEECCC
Confidence 5999999888887665 34444445443
No 209
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=93.34 E-value=0.21 Score=34.33 Aligned_cols=16 Identities=25% Similarity=0.463 Sum_probs=14.1
Q ss_pred CCChhHHHHHHHHHHc
Q 029558 101 PQCGFSHTVVQILKSL 116 (191)
Q Consensus 101 p~Cp~C~kak~iL~~~ 116 (191)
+.||+|......|.+.
T Consensus 7 ~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 7 PLCPYCYLFEPELEKL 22 (98)
T ss_pred CCCHhHHhhhHHHHHH
Confidence 7999999999888875
No 210
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=93.29 E-value=0.69 Score=37.84 Aligned_cols=74 Identities=20% Similarity=0.262 Sum_probs=33.5
Q ss_pred HHHHHhhcCCcEEEEEecCCCCCCChhHHHHHH-HHHHc------CCCceE--eecCCCHHHHHHHH----hhCCCCccc
Q 029558 79 STLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQ-ILKSL------NAPFET--VNILENEMLRQGLK----EYSSWPTFP 145 (191)
Q Consensus 79 ~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~-iL~~~------gV~y~~--vdV~~d~~~r~~Lk----~~sg~~tvP 145 (191)
+.++++-+++|.++..-++ .+|.+|+.+.+ .+.+. |-.|.. +|.++.|++...++ .++|...+|
T Consensus 28 ea~~~Ak~e~KpIfl~ig~---~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwP 104 (163)
T PF03190_consen 28 EALEKAKKENKPIFLSIGY---SWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWP 104 (163)
T ss_dssp HHHHHHHHHT--EEEEEE----TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SS
T ss_pred HHHHHHHhcCCcEEEEEEe---cCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCC
Confidence 4455555555543333321 59999995543 33222 222333 55566677655543 344666777
Q ss_pred EEEE---CCEEEe
Q 029558 146 QLYI---EGEFFG 155 (191)
Q Consensus 146 ~IfI---~G~~VG 155 (191)
...+ +|+.+-
T Consensus 105 l~vfltPdg~p~~ 117 (163)
T PF03190_consen 105 LTVFLTPDGKPFF 117 (163)
T ss_dssp EEEEE-TTS-EEE
T ss_pred ceEEECCCCCeee
Confidence 6655 777664
No 211
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=93.07 E-value=0.85 Score=32.18 Aligned_cols=63 Identities=13% Similarity=0.133 Sum_probs=42.5
Q ss_pred ChhHHHHHHHHHHcCCCceEeecCCC--HHH--HHHHHhh----CCCCcccEEEECCEEEeechhhHHHHH
Q 029558 103 CGFSHTVVQILKSLNAPFETVNILEN--EML--RQGLKEY----SSWPTFPQLYIEGEFFGGCDITVGKLM 165 (191)
Q Consensus 103 Cp~C~kak~iL~~~gV~y~~vdV~~d--~~~--r~~Lk~~----sg~~tvP~IfI~G~~VGG~del~~~lk 165 (191)
-+.|++++-+|++.|++|+.+.++-. +.. .+.+... .-..++|.+..||..+.-...+..++.
T Consensus 9 ~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa 79 (82)
T cd03075 9 RGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIA 79 (82)
T ss_pred ccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHh
Confidence 46778999999999999998877531 111 1112111 156799999999987777666665553
No 212
>PTZ00102 disulphide isomerase; Provisional
Probab=93.06 E-value=0.33 Score=44.24 Aligned_cols=54 Identities=26% Similarity=0.449 Sum_probs=34.4
Q ss_pred CcEEEEEecCCCCCCChhHHHHHHHHHHcC--------CCceEeecCCCHHHHHHHHhhCCCCcccEEEE
Q 029558 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLN--------APFETVNILENEMLRQGLKEYSSWPTFPQLYI 149 (191)
Q Consensus 88 ~kVVIYsk~~~~~p~Cp~C~kak~iL~~~g--------V~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI 149 (191)
..|+|+... |||++|+.....|++.. +.+..+|.+.++.. .+..+...+|++++
T Consensus 376 k~vlv~f~a----~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~----~~~~~v~~~Pt~~~ 437 (477)
T PTZ00102 376 KDVLLEIYA----PWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETP----LEEFSWSAFPTILF 437 (477)
T ss_pred CCEEEEEEC----CCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccc----hhcCCCcccCeEEE
Confidence 346666665 79999999988887652 23445666655433 22335667887755
No 213
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=92.91 E-value=0.59 Score=35.65 Aligned_cols=47 Identities=21% Similarity=0.231 Sum_probs=31.6
Q ss_pred CCcEEEEEecCCCCC-CChhHHHHHHHHHHc-------CCCceEeecCCCHHHHHHHHh
Q 029558 87 GNKVVLFMKGTKDFP-QCGFSHTVVQILKSL-------NAPFETVNILENEMLRQGLKE 137 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p-~Cp~C~kak~iL~~~-------gV~y~~vdV~~d~~~r~~Lk~ 137 (191)
.++++|+... . |||.|.+....|+++ ++.+..+..+.++.+++.+++
T Consensus 28 gk~~vv~f~~----~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~ 82 (146)
T PF08534_consen 28 GKPVVVNFWA----SAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKK 82 (146)
T ss_dssp TSEEEEEEES----TTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHH
T ss_pred CCeEEEEEEc----cCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHh
Confidence 4555555554 5 899999777555444 566777777777777776665
No 214
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=92.86 E-value=1.1 Score=31.23 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=23.7
Q ss_pred CCChhHHHHHHHHHHc-------CCCceEeecCCC--HHHHHHHHhh
Q 029558 101 PQCGFSHTVVQILKSL-------NAPFETVNILEN--EMLRQGLKEY 138 (191)
Q Consensus 101 p~Cp~C~kak~iL~~~-------gV~y~~vdV~~d--~~~r~~Lk~~ 138 (191)
+||+.|++....|.++ ++.+..++++.+ +++++.+.+.
T Consensus 29 ~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~ 75 (116)
T cd02966 29 SWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKY 75 (116)
T ss_pred ccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHc
Confidence 5999999777666554 344566677663 4444444443
No 215
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=92.65 E-value=1.2 Score=31.35 Aligned_cols=38 Identities=26% Similarity=0.301 Sum_probs=24.4
Q ss_pred CCChhHHHHHHHHHHc--------CCCceEeecCCC-HHHHHHHHhh
Q 029558 101 PQCGFSHTVVQILKSL--------NAPFETVNILEN-EMLRQGLKEY 138 (191)
Q Consensus 101 p~Cp~C~kak~iL~~~--------gV~y~~vdV~~d-~~~r~~Lk~~ 138 (191)
+||+.|.+....|.++ ++.+..+.++++ ++.++.+++.
T Consensus 11 ~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~ 57 (95)
T PF13905_consen 11 SWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKN 57 (95)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhc
Confidence 5999999888888664 334555666665 4555555554
No 216
>smart00594 UAS UAS domain.
Probab=92.64 E-value=0.76 Score=34.82 Aligned_cols=69 Identities=16% Similarity=0.221 Sum_probs=41.1
Q ss_pred hHHHHHHHHhhcCC-cEEEEEecCCCCCCChhHHHHHH-HHHHcCC------CceE--eecCCCHHHHHHHHhhCCCCcc
Q 029558 75 PELKSTLDKVVTGN-KVVLFMKGTKDFPQCGFSHTVVQ-ILKSLNA------PFET--VNILENEMLRQGLKEYSSWPTF 144 (191)
Q Consensus 75 ~~~~~~l~~~i~~~-kVVIYsk~~~~~p~Cp~C~kak~-iL~~~gV------~y~~--vdV~~d~~~r~~Lk~~sg~~tv 144 (191)
...++.++++.++. .++||..+ +||++|++..+ +|.+..| .|.. +|+...+. ..+.+..+..++
T Consensus 14 gs~~~a~~~Ak~~~K~~lv~~~~----~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg--~~l~~~~~~~~~ 87 (122)
T smart00594 14 GSLEAAKQEASRQRRLLWLYLHS----QDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEG--QRVSQFYKLDSF 87 (122)
T ss_pred CCHHHHHHHHHhhcCCEEEEEeC----CCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhH--HHHHHhcCcCCC
Confidence 34566666666664 46667665 79999986433 3333221 2433 45554332 345556677889
Q ss_pred cEEEE
Q 029558 145 PQLYI 149 (191)
Q Consensus 145 P~IfI 149 (191)
|.+.+
T Consensus 88 P~~~~ 92 (122)
T smart00594 88 PYVAI 92 (122)
T ss_pred CEEEE
Confidence 98866
No 217
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=92.51 E-value=2.1 Score=33.77 Aligned_cols=27 Identities=19% Similarity=0.457 Sum_probs=17.0
Q ss_pred cCCcEEEEEecCCCCCCChhHHHHHHHHHHc
Q 029558 86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSL 116 (191)
Q Consensus 86 ~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~ 116 (191)
+...+++|... ++||.|.+....|.++
T Consensus 24 ~~k~~ll~f~~----t~Cp~c~~~~~~l~~l 50 (171)
T cd02969 24 DGKALVVMFIC----NHCPYVKAIEDRLNRL 50 (171)
T ss_pred CCCEEEEEEEC----CCCccHHHHHHHHHHH
Confidence 34555555555 5999998655555444
No 218
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.21 E-value=1.1 Score=33.90 Aligned_cols=77 Identities=14% Similarity=0.148 Sum_probs=47.7
Q ss_pred hcCCcEEEEEecCCCCCCChhH------HHHHHHHHHc--------CCCceEeecCCC--HHHHHHHH--hhCCCCcccE
Q 029558 85 VTGNKVVLFMKGTKDFPQCGFS------HTVVQILKSL--------NAPFETVNILEN--EMLRQGLK--EYSSWPTFPQ 146 (191)
Q Consensus 85 i~~~kVVIYsk~~~~~p~Cp~C------~kak~iL~~~--------gV~y~~vdV~~d--~~~r~~Lk--~~sg~~tvP~ 146 (191)
.+..++++|+.. .-|--| +...+||+.. ...|+++||... .+.-..+. ....-.-+|.
T Consensus 2 ~~~~~l~VyGae----~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPl 77 (106)
T COG4837 2 VNEAKLVVYGAE----VICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPL 77 (106)
T ss_pred CceeEEEEecch----hhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceE
Confidence 345678899875 346666 4667777654 344788999642 12212222 2334557899
Q ss_pred EEECCEEEe-echhhHHHHH
Q 029558 147 LYIEGEFFG-GCDITVGKLM 165 (191)
Q Consensus 147 IfI~G~~VG-G~del~~~lk 165 (191)
|.++|+.|+ |.-.+++-.+
T Consensus 78 ivvedeiVaeGnprlKdiy~ 97 (106)
T COG4837 78 IVVEDEIVAEGNPRLKDIYR 97 (106)
T ss_pred EEEcceEeecCCchHHHHHH
Confidence 999999997 5555555443
No 219
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=91.92 E-value=1 Score=33.79 Aligned_cols=26 Identities=23% Similarity=0.171 Sum_probs=17.8
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHc
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL 116 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~ 116 (191)
.+.++||.-+ .|||.|.+....|+++
T Consensus 23 gk~vvl~F~a----~~C~~C~~~~p~l~~l 48 (126)
T cd03012 23 GKVVLLDFWT----YCCINCLHTLPYLTDL 48 (126)
T ss_pred CCEEEEEEEC----CCCccHHHHHHHHHHH
Confidence 4445555544 4999999887777665
No 220
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.85 E-value=0.9 Score=38.40 Aligned_cols=68 Identities=16% Similarity=0.243 Sum_probs=54.0
Q ss_pred CChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHHHHHhh
Q 029558 102 QCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLMDFLNL 170 (191)
Q Consensus 102 ~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lke~L~~ 170 (191)
..+.++-++.+|...|++|++..+..... -..++..+....+|.+.|||..+...-.+..++-.-...
T Consensus 11 ~RG~ae~iR~lf~~a~v~fEd~r~~~~~~-w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyLArk~gl 78 (206)
T KOG1695|consen 11 IRGLAEPIRLLFAYAGVSFEDKRITMEDA-WEELKDKMPFGQLPVLEVDGKKLVQSRAILRYLARKFGL 78 (206)
T ss_pred cchhHHHHHHHHHhcCCCcceeeeccccc-hhhhcccCCCCCCCEEeECCEeeccHHHHHHHHHHHhCc
Confidence 78899999999999999999999875432 455666678999999999999888777766665544443
No 221
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.84 E-value=0.36 Score=44.69 Aligned_cols=80 Identities=14% Similarity=0.248 Sum_probs=55.7
Q ss_pred hcChHHHHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHcCC---CceEeecCCCHHHHHHHHhhCCCCcccEEE
Q 029558 72 ALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNA---PFETVNILENEMLRQGLKEYSSWPTFPQLY 148 (191)
Q Consensus 72 ~~~~~~~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV---~y~~vdV~~d~~~r~~Lk~~sg~~tvP~If 148 (191)
....++.+.++.+-......-|..- .|..|-.+++.|+-..+ .....-|+. .-.+++.... +...+|.||
T Consensus 102 k~~q~vieqik~i~g~~~FETy~Sl-----tC~nCPDVVQALN~msvlNp~I~H~~IdG-a~Fq~Evear-~IMaVPtvf 174 (520)
T COG3634 102 KEDQDVIEQIKAIDGDFHFETYFSL-----TCHNCPDVVQALNLMSVLNPRIKHTAIDG-ALFQDEVEAR-NIMAVPTVF 174 (520)
T ss_pred chhHHHHHHHHhcCCceeEEEEEEe-----eccCChHHHHHHHHHHhcCCCceeEEecc-hhhHhHHHhc-cceecceEE
Confidence 5567788888888888888888774 78888877777776543 344444432 3344444433 677999999
Q ss_pred ECCEEEeech
Q 029558 149 IEGEFFGGCD 158 (191)
Q Consensus 149 I~G~~VGG~d 158 (191)
.||+.+|.-.
T Consensus 175 lnGe~fg~GR 184 (520)
T COG3634 175 LNGEEFGQGR 184 (520)
T ss_pred Ecchhhcccc
Confidence 9999887533
No 222
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=91.76 E-value=0.89 Score=38.30 Aligned_cols=76 Identities=18% Similarity=0.177 Sum_probs=40.8
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHHcCCC----ceE--ee---------cCCCH---HHHHHHHhhCCC--CcccEEEE
Q 029558 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAP----FET--VN---------ILENE---MLRQGLKEYSSW--PTFPQLYI 149 (191)
Q Consensus 90 VVIYsk~~~~~p~Cp~C~kak~iL~~~gV~----y~~--vd---------V~~d~---~~r~~Lk~~sg~--~tvP~IfI 149 (191)
|.+|+.. +|.-|--|-++|.++.-. --. +| -...+ +-++.+.+..|. -..||++|
T Consensus 2 VELFTSQ-----GCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV 76 (202)
T PF06764_consen 2 VELFTSQ-----GCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV 76 (202)
T ss_dssp EEEEE-T-----T-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE
T ss_pred eeEecCC-----CCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE
Confidence 6789995 999999998888877321 111 12 12222 223334444443 34699999
Q ss_pred CC-EEEeechh--hHHHHHHHHhh
Q 029558 150 EG-EFFGGCDI--TVGKLMDFLNL 170 (191)
Q Consensus 150 ~G-~~VGG~de--l~~~lke~L~~ 170 (191)
|| ++++|.+. +...+++....
T Consensus 77 nG~~~~~g~~~~~~~~ai~~~~~~ 100 (202)
T PF06764_consen 77 NGREHRVGSDRAAVEAAIQAARAR 100 (202)
T ss_dssp TTTEEEETT-HHHHHHHHHHHHHT
T ss_pred CCeeeeeccCHHHHHHHHHHhhcc
Confidence 99 56778774 44555555443
No 223
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=90.76 E-value=1 Score=40.42 Aligned_cols=74 Identities=16% Similarity=0.363 Sum_probs=43.0
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHc---------CCCceEeecCCCHHHHHHHHhhCCCCcccEEEE--CCE---
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL---------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGE--- 152 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~---------gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI--~G~--- 152 (191)
...++|+... |||+.|+.....+++. ++.+-.+|++.++ +.. .+...+|++++ +|.
T Consensus 364 ~~~vlv~f~a----~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-----~~~-~~i~~~Pt~~~~~~~~~~~ 433 (462)
T TIGR01130 364 TKDVLVEFYA----PWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-----VPP-FEVEGFPTIKFVPAGKKSE 433 (462)
T ss_pred CCeEEEEEEC----CCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-----cCC-CCccccCEEEEEeCCCCcC
Confidence 3455555554 7999999888877664 2345566766543 112 45678898866 442
Q ss_pred ---EEeechhhHHHHHHHHhhcC
Q 029558 153 ---FFGGCDITVGKLMDFLNLLN 172 (191)
Q Consensus 153 ---~VGG~del~~~lke~L~~lg 172 (191)
+.|+.+. +.+.+.+++.+
T Consensus 434 ~~~~~g~~~~--~~l~~~l~~~~ 454 (462)
T TIGR01130 434 PVPYDGDRTL--EDFSKFIAKHA 454 (462)
T ss_pred ceEecCcCCH--HHHHHHHHhcC
Confidence 2343333 44555555533
No 224
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=90.75 E-value=0.33 Score=35.81 Aligned_cols=17 Identities=12% Similarity=0.210 Sum_probs=13.3
Q ss_pred CCChhHHHHHHHHHHcC
Q 029558 101 PQCGFSHTVVQILKSLN 117 (191)
Q Consensus 101 p~Cp~C~kak~iL~~~g 117 (191)
+||+.|+.....|.++.
T Consensus 30 ~~C~~C~~~~~~l~~~~ 46 (123)
T cd03011 30 TWCPVCRFTSPTVNQLA 46 (123)
T ss_pred CcChhhhhhChHHHHHH
Confidence 59999998877776553
No 225
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.59 E-value=1.3 Score=37.23 Aligned_cols=73 Identities=15% Similarity=0.082 Sum_probs=57.6
Q ss_pred cEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecC--CCHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHHH
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNIL--ENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLMD 166 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~--~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lke 166 (191)
++.+|+. +.-+.|+++.-.++.+|++|+.+.|+ ..+....++..+....++|.+.-+|-.+-....+..++-+
T Consensus 2 ~~~ly~~-----~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ 76 (226)
T KOG0867|consen 2 KLKLYGH-----LGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLAE 76 (226)
T ss_pred CceEeec-----CCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHHH
Confidence 4567877 58888999999999999999888554 4455666666788889999999998887777666666654
No 226
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=90.33 E-value=0.75 Score=43.71 Aligned_cols=69 Identities=22% Similarity=0.351 Sum_probs=42.7
Q ss_pred HHHHHHhhcCCcEEEEEecCCCCCCChhHH-------HHHHHHHHc--CCCceEeecCCCHHHHHHHHhhCCCCcccEE-
Q 029558 78 KSTLDKVVTGNKVVLFMKGTKDFPQCGFSH-------TVVQILKSL--NAPFETVNILENEMLRQGLKEYSSWPTFPQL- 147 (191)
Q Consensus 78 ~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~-------kak~iL~~~--gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~I- 147 (191)
.+-+++.|..+..++..- .+|||++|+ ++-..|.+. .|..-.+|-.++ ..+....+.+.+|++
T Consensus 32 ~dnf~~~i~~~~~vlVeF---YAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~----~~~~~~y~v~gyPTlk 104 (493)
T KOG0190|consen 32 KDNFKETINGHEFVLVEF---YAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE----SDLASKYEVRGYPTLK 104 (493)
T ss_pred cccHHHHhccCceEEEEE---EchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh----hhhHhhhcCCCCCeEE
Confidence 345677777887653322 238999998 455667776 344555554433 445555577788887
Q ss_pred -EECCEE
Q 029558 148 -YIEGEF 153 (191)
Q Consensus 148 -fI~G~~ 153 (191)
|.||+.
T Consensus 105 iFrnG~~ 111 (493)
T KOG0190|consen 105 IFRNGRS 111 (493)
T ss_pred EEecCCc
Confidence 447763
No 227
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=90.14 E-value=3.8 Score=32.36 Aligned_cols=70 Identities=14% Similarity=0.178 Sum_probs=41.3
Q ss_pred HHHhhcCC-cEEEEEecCCCCCCChhHHHHHHHHHHc----C---CCceEeecCCCHHHHHHHHhhCCCCcccEEEE--C
Q 029558 81 LDKVVTGN-KVVLFMKGTKDFPQCGFSHTVVQILKSL----N---APFETVNILENEMLRQGLKEYSSWPTFPQLYI--E 150 (191)
Q Consensus 81 l~~~i~~~-kVVIYsk~~~~~p~Cp~C~kak~iL~~~----g---V~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI--~ 150 (191)
++..++.. ..++|..|-|. -+|.+..+--+|.++ + +.+-.+|+++++++.. ..|...+|.+.+ |
T Consensus 27 ~~~~~~~~~~~vl~~~gdp~--r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~----~fgV~siPTLl~Fkd 100 (132)
T PRK11509 27 LDDWLTQAPDGVVLLSSDPK--RTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGD----RFGVFRFPATLVFTG 100 (132)
T ss_pred HHHHHhCCCcEEEEeCCCCC--cCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHH----HcCCccCCEEEEEEC
Confidence 44444444 34555555343 355555554444443 2 4577788888766544 457778998754 9
Q ss_pred CEEEee
Q 029558 151 GEFFGG 156 (191)
Q Consensus 151 G~~VGG 156 (191)
|+.+|-
T Consensus 101 Gk~v~~ 106 (132)
T PRK11509 101 GNYRGV 106 (132)
T ss_pred CEEEEE
Confidence 987753
No 228
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=90.11 E-value=3.8 Score=31.54 Aligned_cols=73 Identities=22% Similarity=0.197 Sum_probs=44.4
Q ss_pred HHHHHhhcCCcEEEEEecCCCCCCCh---hHHHHHHHHHHc--CCCceEeecCCC-HHHHHHHHhhCCCC--cccEE--E
Q 029558 79 STLDKVVTGNKVVLFMKGTKDFPQCG---FSHTVVQILKSL--NAPFETVNILEN-EMLRQGLKEYSSWP--TFPQL--Y 148 (191)
Q Consensus 79 ~~l~~~i~~~kVVIYsk~~~~~p~Cp---~C~kak~iL~~~--gV~y~~vdV~~d-~~~r~~Lk~~sg~~--tvP~I--f 148 (191)
..+++.+..++.++-.-..+. |||+ +|++....+.+. .|.+-.+|+++- +.....|.+..|.. .+|+| |
T Consensus 9 ~nF~~~v~~~~~vlV~F~A~~-Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~lF 87 (116)
T cd03007 9 VTFYKVIPKFKYSLVKFDTAY-PYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESYPVIYLF 87 (116)
T ss_pred hhHHHHHhcCCcEEEEEeCCC-CCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCCCEEEEE
Confidence 345666677765333222122 7999 999888777554 366777887541 11224576677777 89987 4
Q ss_pred ECCE
Q 029558 149 IEGE 152 (191)
Q Consensus 149 I~G~ 152 (191)
.+|+
T Consensus 88 ~~g~ 91 (116)
T cd03007 88 HGGD 91 (116)
T ss_pred eCCC
Confidence 4673
No 229
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=89.91 E-value=1.4 Score=33.17 Aligned_cols=55 Identities=24% Similarity=0.263 Sum_probs=30.9
Q ss_pred CcEEEEEecCCCCCCChhHHHHHHHHHHc-------CCCceEeecCCCHHHHHHHHhhCCCCcccEEE
Q 029558 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILENEMLRQGLKEYSSWPTFPQLY 148 (191)
Q Consensus 88 ~kVVIYsk~~~~~p~Cp~C~kak~iL~~~-------gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~If 148 (191)
..|++|..+ .|||.|++-...|.++ |+..--+..+......... +..+ -.+|.+.
T Consensus 25 ~~vl~f~~~----~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~-~~~~-~~~p~~~ 86 (149)
T cd02970 25 PVVVVFYRG----FGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFD-KGKF-LPFPVYA 86 (149)
T ss_pred CEEEEEECC----CCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHH-HhcC-CCCeEEE
Confidence 445665543 4999999866666554 5555555655544444333 3323 3577544
No 230
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=88.99 E-value=1.4 Score=32.55 Aligned_cols=63 Identities=21% Similarity=0.255 Sum_probs=39.9
Q ss_pred CChhHHHHHHHHHHcCC--CceEeecCCCHHHHHHHH--hhC--CCCcccEEEECCE-EEeechhhHHHHH
Q 029558 102 QCGFSHTVVQILKSLNA--PFETVNILENEMLRQGLK--EYS--SWPTFPQLYIEGE-FFGGCDITVGKLM 165 (191)
Q Consensus 102 ~Cp~C~kak~iL~~~gV--~y~~vdV~~d~~~r~~Lk--~~s--g~~tvP~IfI~G~-~VGG~del~~~lk 165 (191)
.||+|...++++..++. .++.+++...++. +.+. ..+ ...+.-.+.-+|+ ...|.+-+....+
T Consensus 6 ~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~g~~~~~G~~A~~~l~~ 75 (114)
T PF04134_consen 6 DCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQ-ALLASYGISPEDADSRLHLIDDGERVYRGSDAVLRLLR 75 (114)
T ss_pred CCHhHHHHHHHHHhcCCCCCEEEEECCChhhh-hHHHhcCcCHHHHcCeeEEecCCCEEEEcHHHHHHHHH
Confidence 89999999999999975 5788888543221 1111 111 1233444434776 8889888766654
No 231
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=88.51 E-value=1.4 Score=42.22 Aligned_cols=26 Identities=4% Similarity=0.067 Sum_probs=19.2
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHc
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL 116 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~ 116 (191)
.+.|+|+..+ +||+.|++....|.++
T Consensus 56 GKpVvV~FWA----TWCppCk~emP~L~eL 81 (521)
T PRK14018 56 DKPTLIKFWA----SWCPLCLSELGETEKW 81 (521)
T ss_pred CCEEEEEEEc----CCCHHHHHHHHHHHHH
Confidence 4456665555 5999999988888765
No 232
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=88.49 E-value=1.7 Score=29.47 Aligned_cols=50 Identities=24% Similarity=0.350 Sum_probs=31.1
Q ss_pred CCChhHHHHHHHHHHcC------CCceEeecC-CCHHHHHHHHhhCCCCcccEEE--ECCE
Q 029558 101 PQCGFSHTVVQILKSLN------APFETVNIL-ENEMLRQGLKEYSSWPTFPQLY--IEGE 152 (191)
Q Consensus 101 p~Cp~C~kak~iL~~~g------V~y~~vdV~-~d~~~r~~Lk~~sg~~tvP~If--I~G~ 152 (191)
+|||+|+.....|.+.. +.+..+|+. .+.+..+.+.. ....+|.+. .+|+
T Consensus 42 ~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~p~~~~~~~~~ 100 (127)
T COG0526 42 PWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGV--AVRSIPTLLLFKDGK 100 (127)
T ss_pred CcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhh--hhccCCeEEEEeCcc
Confidence 59999999988886653 556777775 45565555542 122335544 4554
No 233
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=88.28 E-value=1.5 Score=32.05 Aligned_cols=58 Identities=31% Similarity=0.430 Sum_probs=33.5
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHc-------CCCceEeecCCCHHHHHHHHhhCCCCcccEEEE
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI 149 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~-------gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI 149 (191)
.+.++|+.-.+ .|||+|.+....|.++ |+.+-.+..+...+.++.+++.. ..+|.+.-
T Consensus 25 gk~~vl~f~~~---~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~--~~~~~~~D 89 (124)
T PF00578_consen 25 GKPVVLFFWPT---AWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYG--LPFPVLSD 89 (124)
T ss_dssp TSEEEEEEEST---TTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHT--CSSEEEEE
T ss_pred CCcEEEEEeCc---cCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhc--cccccccC
Confidence 44555555431 3899998776655553 45555556555455655555542 55666654
No 234
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=86.99 E-value=2.8 Score=29.42 Aligned_cols=55 Identities=27% Similarity=0.235 Sum_probs=43.7
Q ss_pred ChhHHHHHHHHHHcCCC---ceEeecCCCHHHHHHHHhhCCCCcccEEEE-CCEEEeechhhHHHHH
Q 029558 103 CGFSHTVVQILKSLNAP---FETVNILENEMLRQGLKEYSSWPTFPQLYI-EGEFFGGCDITVGKLM 165 (191)
Q Consensus 103 Cp~C~kak~iL~~~gV~---y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI-~G~~VGG~del~~~lk 165 (191)
-+.|-.+..+|+-.+.+ ++.+... |+. ++....+|.+.. +|+.+.|++++.++++
T Consensus 14 d~ecLa~~~yl~~~~~~~~~~~vv~s~-n~~-------~Sptg~LP~L~~~~~~~vsg~~~Iv~yL~ 72 (72)
T PF10568_consen 14 DPECLAVIAYLKFAGAPEQQFKVVPSN-NPW-------LSPTGELPALIDSGGTWVSGFRNIVEYLR 72 (72)
T ss_pred CHHHHHHHHHHHhCCCCCceEEEEEcC-CCC-------cCCCCCCCEEEECCCcEEECHHHHHHhhC
Confidence 58899999999999999 6555442 222 445678999999 9999999999988763
No 235
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=85.64 E-value=6.1 Score=40.80 Aligned_cols=27 Identities=26% Similarity=0.166 Sum_probs=19.1
Q ss_pred cCCcEEEEEecCCCCCCChhHHHHHHHHHHc
Q 029558 86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSL 116 (191)
Q Consensus 86 ~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~ 116 (191)
+.+.|+|+... .||+.|++....|+++
T Consensus 419 kGK~vll~FWA----sWC~pC~~e~P~L~~l 445 (1057)
T PLN02919 419 KGKVVILDFWT----YCCINCMHVLPDLEFL 445 (1057)
T ss_pred CCCEEEEEEEC----CcChhHHhHhHHHHHH
Confidence 44555555554 5999999988887665
No 236
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=85.54 E-value=1.6 Score=34.27 Aligned_cols=34 Identities=18% Similarity=0.282 Sum_probs=22.5
Q ss_pred HHHHHHHHhhcCCc-EEEEEecCCCCCCChhHHHHHHHH
Q 029558 76 ELKSTLDKVVTGNK-VVLFMKGTKDFPQCGFSHTVVQIL 113 (191)
Q Consensus 76 ~~~~~l~~~i~~~k-VVIYsk~~~~~p~Cp~C~kak~iL 113 (191)
+.++.++.+.++++ |+|+..+ .||++|++..+..
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~s----dwC~~Ck~l~k~~ 45 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHL----EDCPHSQALKKAF 45 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeC----CcCHhHHHHHHHh
Confidence 45666776666654 5555444 5999999886653
No 237
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=84.86 E-value=1.1 Score=40.75 Aligned_cols=75 Identities=11% Similarity=0.276 Sum_probs=44.2
Q ss_pred hHHHHHHHHhhcCCcE-EEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecC----C-CHHHHHHHHhhCCCCcccEE-
Q 029558 75 PELKSTLDKVVTGNKV-VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNIL----E-NEMLRQGLKEYSSWPTFPQL- 147 (191)
Q Consensus 75 ~~~~~~l~~~i~~~kV-VIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~----~-d~~~r~~Lk~~sg~~tvP~I- 147 (191)
.++.+++++...+.-- |=|.. |||.+|++...+.++-|.+...+.+. + |..-...+....|...+|+|
T Consensus 31 eDLddkFkdnkdddiW~VdFYA-----PWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk 105 (468)
T KOG4277|consen 31 EDLDDKFKDNKDDDIWFVDFYA-----PWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIK 105 (468)
T ss_pred hhhhHHhhhcccCCeEEEEeec-----hhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEE
Confidence 3455555554444432 33333 89999999999999988776554431 1 22222334445577788887
Q ss_pred EECCEEE
Q 029558 148 YIEGEFF 154 (191)
Q Consensus 148 fI~G~~V 154 (191)
|..|.+.
T Consensus 106 ~~kgd~a 112 (468)
T KOG4277|consen 106 FFKGDHA 112 (468)
T ss_pred EecCCee
Confidence 4455443
No 238
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=84.74 E-value=6.2 Score=32.17 Aligned_cols=44 Identities=23% Similarity=0.348 Sum_probs=27.2
Q ss_pred HHHHhhcCCcEEEEEecCCCCCCChhHHH----HHHHH---HHcCCCceEeecCC
Q 029558 80 TLDKVVTGNKVVLFMKGTKDFPQCGFSHT----VVQIL---KSLNAPFETVNILE 127 (191)
Q Consensus 80 ~l~~~i~~~kVVIYsk~~~~~p~Cp~C~k----ak~iL---~~~gV~y~~vdV~~ 127 (191)
.+.+....+-|.+|... .|||.|+. .++++ ++.+-+++.+=|+.
T Consensus 26 ~~~~~l~gKvV~lyFsA----~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~ 76 (157)
T KOG2501|consen 26 LASEALQGKVVGLYFSA----HWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSS 76 (157)
T ss_pred hHhHhhCCcEEEEEEEE----EECCchhhCCchHHHHHHHHHhcCCceEEEEEec
Confidence 34445556677777775 69999983 34444 44455577765543
No 239
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=83.84 E-value=5.7 Score=29.64 Aligned_cols=44 Identities=20% Similarity=0.083 Sum_probs=25.5
Q ss_pred CChhHHHHHHHH-------HHcCCCceEeecCCCHHHHHHHHhhCCCCcccEE
Q 029558 102 QCGFSHTVVQIL-------KSLNAPFETVNILENEMLRQGLKEYSSWPTFPQL 147 (191)
Q Consensus 102 ~Cp~C~kak~iL-------~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~I 147 (191)
|||.|......| .+.++.+..+.++...++++.+++. +. .+|.+
T Consensus 35 ~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~-~~-~~~~l 85 (140)
T cd03017 35 DTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKY-GL-PFPLL 85 (140)
T ss_pred CCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHh-CC-CceEE
Confidence 899997644443 3346666666666555666555543 32 45633
No 240
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=83.83 E-value=2.5 Score=40.15 Aligned_cols=69 Identities=17% Similarity=0.166 Sum_probs=44.8
Q ss_pred hcChHHHHHHHHhhcC----CcEEEEEecCCCCCCChhHHHHHHHHHHc-----CCCceEeecCCCHHHHHHHHhhCCCC
Q 029558 72 ALTPELKSTLDKVVTG----NKVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWP 142 (191)
Q Consensus 72 ~~~~~~~~~l~~~i~~----~kVVIYsk~~~~~p~Cp~C~kak~iL~~~-----gV~y~~vdV~~d~~~r~~Lk~~sg~~ 142 (191)
.+++++++.+++.+.. -.+++|.. +.|.+|.+++++|++. .|.++.+|..++.+..+. .+..
T Consensus 348 ~l~~~~~~~l~~~~~~l~~~v~l~~~~~-----~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~----~~v~ 418 (555)
T TIGR03143 348 LLDDSLRQQLVGIFGRLENPVTLLLFLD-----GSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETL----PKIT 418 (555)
T ss_pred ccCHHHHHHHHHHHHhcCCCEEEEEEEC-----CCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhh----cCCC
Confidence 4555665555554443 24556766 3899999999999985 455677776655444333 3455
Q ss_pred cccEEEE
Q 029558 143 TFPQLYI 149 (191)
Q Consensus 143 tvP~IfI 149 (191)
..|.+.+
T Consensus 419 ~~P~~~i 425 (555)
T TIGR03143 419 KLPTVAL 425 (555)
T ss_pred cCCEEEE
Confidence 7788876
No 241
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=83.30 E-value=4.4 Score=30.67 Aligned_cols=44 Identities=18% Similarity=0.103 Sum_probs=25.1
Q ss_pred CCChhHHHHHHHHHHc-------CCCceEeecCCCHHHHHHHHhhCCCCcccE
Q 029558 101 PQCGFSHTVVQILKSL-------NAPFETVNILENEMLRQGLKEYSSWPTFPQ 146 (191)
Q Consensus 101 p~Cp~C~kak~iL~~~-------gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~ 146 (191)
.|||.|.+....|.++ |+.+-.+..+..+.+++.+++. + ..+|.
T Consensus 39 ~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~-~-~~~~~ 89 (149)
T cd03018 39 AFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEEN-G-LTFPL 89 (149)
T ss_pred CCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhc-C-CCceE
Confidence 3999999766555443 5555555555444555555443 3 24554
No 242
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=83.19 E-value=4.7 Score=30.04 Aligned_cols=46 Identities=13% Similarity=-0.018 Sum_probs=25.9
Q ss_pred CCChhHHHHHHHHHH-------cCCCceEeecCCCHHHHHHHHhhCCCCcccEE
Q 029558 101 PQCGFSHTVVQILKS-------LNAPFETVNILENEMLRQGLKEYSSWPTFPQL 147 (191)
Q Consensus 101 p~Cp~C~kak~iL~~-------~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~I 147 (191)
.||+.|.....-|.+ .++.+-.+.++....+++..+++ +...+|.+
T Consensus 33 ~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~-~~~~~~~l 85 (140)
T cd02971 33 DFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKE-GGLNFPLL 85 (140)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcc-cCCCceEE
Confidence 389999876555544 35666666655434444444433 34456654
No 243
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=82.99 E-value=4.3 Score=35.06 Aligned_cols=61 Identities=15% Similarity=0.260 Sum_probs=42.5
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHcCCC--ceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEee
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAP--FETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGG 156 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~--y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG 156 (191)
...|-||..- +|-.|....+.|++.|.- .+.+|-...+. .++++ +.-++|-||+||+.+-+
T Consensus 10 ~~~VkI~~Hk-----tC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f--~~~~~--~V~SvP~Vf~DGel~~~ 72 (265)
T COG5494 10 EMEVKIFTHK-----TCVSSYMLFEYLENKGLLGKVKIIDAELPPF--LAFEK--GVISVPSVFIDGELVYA 72 (265)
T ss_pred heEEEEEEec-----chHHHHHHHHHHHhcCCCCCceEEEcCCChH--HHhhc--ceeecceEEEcCeEEEc
Confidence 4567888874 999999999999998863 34444332222 22322 35589999999998743
No 244
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=82.52 E-value=4.2 Score=30.78 Aligned_cols=43 Identities=7% Similarity=-0.129 Sum_probs=23.3
Q ss_pred C-ChhHHHHHHHHHHc-----CCCceEeecCCCHHHHHHHHhhCCCCccc
Q 029558 102 Q-CGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFP 145 (191)
Q Consensus 102 ~-Cp~C~kak~iL~~~-----gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP 145 (191)
| ||.|.+-...|.++ |+.+--+.++.....++ +.+..+...+|
T Consensus 37 ~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~-~~~~~~~~~~~ 85 (143)
T cd03014 37 IDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKR-WCGAEGVDNVT 85 (143)
T ss_pred CCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHH-HHHhcCCCCce
Confidence 5 79999877776554 44455555554333433 33333433455
No 245
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=82.12 E-value=6.4 Score=30.27 Aligned_cols=44 Identities=14% Similarity=-0.021 Sum_probs=24.4
Q ss_pred CChhHHHH-------HHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEE
Q 029558 102 QCGFSHTV-------VQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQL 147 (191)
Q Consensus 102 ~Cp~C~ka-------k~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~I 147 (191)
+||.|... .+.+.+.|+.+-.+.++..+++++.+++. + .++|.+
T Consensus 42 ~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~-~-~~~~~l 92 (154)
T PRK09437 42 MTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKE-L-LNFTLL 92 (154)
T ss_pred CCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHh-C-CCCeEE
Confidence 68888543 33444556666666666555555555544 2 245543
No 246
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=81.78 E-value=2.8 Score=31.45 Aligned_cols=55 Identities=9% Similarity=0.116 Sum_probs=35.2
Q ss_pred HHHHHHHHHcCCCceEeec-CCCHHHHHHH------HhhCCCCcccEEEECCEEEeechhhH
Q 029558 107 HTVVQILKSLNAPFETVNI-LENEMLRQGL------KEYSSWPTFPQLYIEGEFFGGCDITV 161 (191)
Q Consensus 107 ~kak~iL~~~gV~y~~vdV-~~d~~~r~~L------k~~sg~~tvP~IfI~G~~VGG~del~ 161 (191)
..+.+++.+.|++.+.++- ..+++.++.+ .+..|...+|.++|||+.+-|.+...
T Consensus 86 ~~l~~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~gtPt~~v~g~~~~G~~~~~ 147 (154)
T cd03023 86 ESLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLARALGITGTPAFIIGDTVIPGAVPAD 147 (154)
T ss_pred HHHHHHHHHcCCCHHHHHHHhhChHHHHHHHHHHHHHHHcCCCcCCeEEECCEEecCCCCHH
Confidence 4567788888887654321 1122222222 22347889999999999998887643
No 247
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=80.88 E-value=2.4 Score=36.90 Aligned_cols=75 Identities=21% Similarity=0.216 Sum_probs=46.1
Q ss_pred cEEEEEecCCCCCCChhHHHHHHHHHHcCCCc---------eEeecC---------CCHHHHHHHHhhCCCCc--ccEEE
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPF---------ETVNIL---------ENEMLRQGLKEYSSWPT--FPQLY 148 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y---------~~vdV~---------~d~~~r~~Lk~~sg~~t--vP~If 148 (191)
-|.+|+.. +|.-|-.+-+.|.++.-+- ++-|.. ++-+-+..+.+..+.++ .||++
T Consensus 44 VVELfTSQ-----GCsSCPPAd~~l~k~a~~~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQav 118 (261)
T COG5429 44 VVELFTSQ-----GCSSCPPADANLAKLADDPGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAV 118 (261)
T ss_pred EEEEeecC-----CcCCCChHHHHHHHhccCCCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchhe
Confidence 47889885 9999999999998874331 112221 12333444555555544 49999
Q ss_pred ECCE-EEeechhhHHHHHHHHhh
Q 029558 149 IEGE-FFGGCDITVGKLMDFLNL 170 (191)
Q Consensus 149 I~G~-~VGG~del~~~lke~L~~ 170 (191)
+||. ++-|.|. ..+++.++.
T Consensus 119 vnGr~~~~Gad~--~~i~~~i~a 139 (261)
T COG5429 119 VNGRVHANGADP--GAIEDAIAA 139 (261)
T ss_pred eechhhhcCCCH--HHHHHHHHH
Confidence 9995 6677665 444444444
No 248
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=80.61 E-value=1 Score=33.88 Aligned_cols=25 Identities=24% Similarity=0.543 Sum_probs=18.5
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHc
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL 116 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~ 116 (191)
..+|++|+. ++||+|.+....+.++
T Consensus 6 ~~~i~~f~D-----~~Cp~C~~~~~~l~~~ 30 (154)
T cd03023 6 DVTIVEFFD-----YNCGYCKKLAPELEKL 30 (154)
T ss_pred CEEEEEEEC-----CCChhHHHhhHHHHHH
Confidence 345677765 7999999887777663
No 249
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=80.09 E-value=6.9 Score=31.22 Aligned_cols=74 Identities=18% Similarity=0.190 Sum_probs=43.3
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHcCCC--ceEeecCCCHHHHHHHHhhCCCC-c--ccEEEE-CCEEEeechhh
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAP--FETVNILENEMLRQGLKEYSSWP-T--FPQLYI-EGEFFGGCDIT 160 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~--y~~vdV~~d~~~r~~Lk~~sg~~-t--vP~IfI-~G~~VGG~del 160 (191)
...||+|-. .|++|...+++|.++.-. +...++.+.+ -+..+ +..|.. . -=.+++ +|+.+-|.|.+
T Consensus 8 p~~vvlyDG------~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~-g~~~l-~~~~l~~~~~~s~~~~~~g~~~~~sdA~ 79 (137)
T COG3011 8 PDLVVLYDG------VCPLCDGWVRFLIRRDQGGRIRFAALQSEP-GQALL-EAAGLDPEDVDSVLLVEAGQLLVGSDAA 79 (137)
T ss_pred CCEEEEECC------cchhHHHHHHHHHHhccCCcEEEEeccCch-hhhHH-hhcCCChhhhheeeEecCCceEeccHHH
Confidence 445666644 899999999999988543 6666665432 22333 333322 2 123333 56777777776
Q ss_pred HHHHHHHH
Q 029558 161 VGKLMDFL 168 (191)
Q Consensus 161 ~~~lke~L 168 (191)
.+.+..+.
T Consensus 80 ~~i~~~L~ 87 (137)
T COG3011 80 IRILRLLP 87 (137)
T ss_pred HHHHHHCC
Confidence 65554433
No 250
>PTZ00056 glutathione peroxidase; Provisional
Probab=79.62 E-value=5.5 Score=32.91 Aligned_cols=16 Identities=25% Similarity=0.667 Sum_probs=11.1
Q ss_pred CCChhHHHHHHHHHHc
Q 029558 101 PQCGFSHTVVQILKSL 116 (191)
Q Consensus 101 p~Cp~C~kak~iL~~~ 116 (191)
.|||+|.+-...|.++
T Consensus 49 swC~~C~~e~p~L~~l 64 (199)
T PTZ00056 49 SKCGLTKKHVDQMNRL 64 (199)
T ss_pred CCCCChHHHHHHHHHH
Confidence 4999998755555544
No 251
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=79.50 E-value=4.2 Score=32.10 Aligned_cols=55 Identities=13% Similarity=0.215 Sum_probs=37.1
Q ss_pred HHHHHHHHHcCCCceEee-cCCCHHHHHHHHh------hCCCCcccEEEECCEEEeechhhH
Q 029558 107 HTVVQILKSLNAPFETVN-ILENEMLRQGLKE------YSSWPTFPQLYIEGEFFGGCDITV 161 (191)
Q Consensus 107 ~kak~iL~~~gV~y~~vd-V~~d~~~r~~Lk~------~sg~~tvP~IfI~G~~VGG~del~ 161 (191)
....+++.+.|++-+.+. ...+++.++.+++ ..|...+|.++|||+.+-|.|.+.
T Consensus 124 ~~l~~~a~~~Gld~~~~~~~~~~~~~~~~l~~~~~~a~~~gi~gvPtfvv~g~~~~G~~~l~ 185 (192)
T cd03022 124 AVLAAVAAAAGLDADELLAAADDPAVKAALRANTEEAIARGVFGVPTFVVDGEMFWGQDRLD 185 (192)
T ss_pred HHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHHHHHHcCCCcCCeEEECCeeecccccHH
Confidence 457788999998754332 2233444433332 238899999999999998888754
No 252
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=79.32 E-value=4.9 Score=31.17 Aligned_cols=16 Identities=31% Similarity=0.754 Sum_probs=11.3
Q ss_pred CCChhHHHHHHHHHHc
Q 029558 101 PQCGFSHTVVQILKSL 116 (191)
Q Consensus 101 p~Cp~C~kak~iL~~~ 116 (191)
+|||+|.+....|.++
T Consensus 32 s~C~~c~~~~~~l~~l 47 (153)
T TIGR02540 32 SECGFTDQNYRALQEL 47 (153)
T ss_pred CCCCchhhhHHHHHHH
Confidence 5999998766555444
No 253
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=79.06 E-value=0.96 Score=40.08 Aligned_cols=72 Identities=13% Similarity=0.097 Sum_probs=57.6
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCC--CHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHHH
Q 029558 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLMD 166 (191)
Q Consensus 90 VVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~--d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lke 166 (191)
.++|.. |+.=.+++|+-.+.+.|++|+.+||+- .+.....+.++.....+|++.-+...|-..+.++++++.
T Consensus 27 ~vLyhh-----pysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvEr 100 (325)
T KOG4420|consen 27 LVLYHH-----PYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVER 100 (325)
T ss_pred ceeeec-----CcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHHHHH
Confidence 788888 577778999999999999999999863 333444566676778899887777788999999998764
No 254
>PHA03075 glutaredoxin-like protein; Provisional
Probab=77.84 E-value=2.8 Score=32.75 Aligned_cols=31 Identities=26% Similarity=0.645 Sum_probs=26.7
Q ss_pred CcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEe
Q 029558 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETV 123 (191)
Q Consensus 88 ~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~v 123 (191)
+.+++|+| |.|+-|+-+-++|.++.-+|+.+
T Consensus 3 ~tLILfGK-----P~C~vCe~~s~~l~~ledeY~il 33 (123)
T PHA03075 3 KTLILFGK-----PLCSVCESISEALKELEDEYDIL 33 (123)
T ss_pred ceEEEeCC-----cccHHHHHHHHHHHHhhccccEE
Confidence 46899999 79999999999999988777654
No 255
>PLN02412 probable glutathione peroxidase
Probab=76.61 E-value=9.8 Score=30.27 Aligned_cols=16 Identities=25% Similarity=0.598 Sum_probs=10.7
Q ss_pred CCChhHHHHHHHHHHc
Q 029558 101 PQCGFSHTVVQILKSL 116 (191)
Q Consensus 101 p~Cp~C~kak~iL~~~ 116 (191)
.|||+|.+-...|.++
T Consensus 39 ~~C~~c~~e~~~l~~l 54 (167)
T PLN02412 39 SKCGLTDSNYKELNVL 54 (167)
T ss_pred CCCCChHHHHHHHHHH
Confidence 4999999755445444
No 256
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=75.96 E-value=7.8 Score=30.01 Aligned_cols=55 Identities=15% Similarity=0.167 Sum_probs=29.0
Q ss_pred CcEEEEEecCCCCCCChhHHHHHHHHHHc-------CCCceEeecC-------CC-HHHHHHHHhhCCCCcccEEE
Q 029558 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNIL-------EN-EMLRQGLKEYSSWPTFPQLY 148 (191)
Q Consensus 88 ~kVVIYsk~~~~~p~Cp~C~kak~iL~~~-------gV~y~~vdV~-------~d-~~~r~~Lk~~sg~~tvP~If 148 (191)
+.|+++... .||| |.+-...|.++ |+.+--+.++ ++ +++++.+++..+ -++|.+.
T Consensus 23 k~vvl~fwa----twC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~-~~fp~~~ 92 (152)
T cd00340 23 KVLLIVNVA----SKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYG-VTFPMFA 92 (152)
T ss_pred CEEEEEEEc----CCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcC-CCceeee
Confidence 445554443 4999 99876666654 3333333332 12 345555554223 3678663
No 257
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=75.70 E-value=3.7 Score=32.38 Aligned_cols=54 Identities=17% Similarity=0.253 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCCceEee-cCCCHHHHHHHHh------hCCCCcccEEEECCE-EEeechhh
Q 029558 107 HTVVQILKSLNAPFETVN-ILENEMLRQGLKE------YSSWPTFPQLYIEGE-FFGGCDIT 160 (191)
Q Consensus 107 ~kak~iL~~~gV~y~~vd-V~~d~~~r~~Lk~------~sg~~tvP~IfI~G~-~VGG~del 160 (191)
..+.+++.+.|++-+.++ ..++++.++.+.+ -.|...+|.++|||+ .+-|.+.+
T Consensus 124 ~vl~~~~~~~Gld~~~~~~~~~~~~~~~~~~~~~~~a~~~gv~GvP~~vv~g~~~~~G~~~~ 185 (193)
T PF01323_consen 124 DVLAEIAEEAGLDPDEFDAALDSPEVKAALEEDTAEARQLGVFGVPTFVVNGKYRFFGADRL 185 (193)
T ss_dssp HHHHHHHHHTT--HHHHHHHHTSHHHHHHHHHHHHHHHHTTCSSSSEEEETTTEEEESCSSH
T ss_pred HHHHHHHHHcCCcHHHHHHHhcchHHHHHHHHHHHHHHHcCCcccCEEEECCEEEEECCCCH
Confidence 457888999999754443 2234444444433 348899999999999 67777763
No 258
>PTZ00256 glutathione peroxidase; Provisional
Probab=75.55 E-value=6.8 Score=31.62 Aligned_cols=46 Identities=13% Similarity=0.227 Sum_probs=24.6
Q ss_pred CCChhHHHHHHHHHHc-------CCCceEeecC--------CCHHHHHHHHhhCCCCcccEE
Q 029558 101 PQCGFSHTVVQILKSL-------NAPFETVNIL--------ENEMLRQGLKEYSSWPTFPQL 147 (191)
Q Consensus 101 p~Cp~C~kak~iL~~~-------gV~y~~vdV~--------~d~~~r~~Lk~~sg~~tvP~I 147 (191)
.|||+|.+-...|+++ |+.+--++++ +.+++++.+++..|. ++|.+
T Consensus 51 twCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~-~fpv~ 111 (183)
T PTZ00256 51 CKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNV-DFPLF 111 (183)
T ss_pred CCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCC-CCCCc
Confidence 3999999866555543 4544444432 124455555433232 46665
No 259
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=74.17 E-value=5.7 Score=30.87 Aligned_cols=50 Identities=8% Similarity=0.146 Sum_probs=30.6
Q ss_pred HHHHHHHHHcCCCceEeec-CCCHHHHHHH------HhhCCCCcccEEEECCEEEee
Q 029558 107 HTVVQILKSLNAPFETVNI-LENEMLRQGL------KEYSSWPTFPQLYIEGEFFGG 156 (191)
Q Consensus 107 ~kak~iL~~~gV~y~~vdV-~~d~~~r~~L------k~~sg~~tvP~IfI~G~~VGG 156 (191)
..+.+++.+.|++.+.++- ..+.+.++.+ ....|...+|.++|||+.+-+
T Consensus 100 ~~l~~~a~~~Gl~~~~~~~~~~s~~~~~~i~~~~~~~~~~gi~gTPt~iInG~~~~~ 156 (178)
T cd03019 100 DDIRKIFLSQGVDKKKFDAAYNSFSVKALVAKAEKLAKKYKITGVPAFVVNGKYVVN 156 (178)
T ss_pred HHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHcCCCCCCeEEECCEEEEC
Confidence 5677888888886543321 1222222222 223488899999999987543
No 260
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=73.71 E-value=9.7 Score=30.14 Aligned_cols=26 Identities=15% Similarity=-0.074 Sum_probs=16.3
Q ss_pred CChhHHHHHHHHHHc-------CCCceEeecCC
Q 029558 102 QCGFSHTVVQILKSL-------NAPFETVNILE 127 (191)
Q Consensus 102 ~Cp~C~kak~iL~~~-------gV~y~~vdV~~ 127 (191)
|||.|......|.++ |+....+.++.
T Consensus 41 ~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~ 73 (173)
T cd03015 41 FTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDS 73 (173)
T ss_pred CCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 899999766666443 55554454443
No 261
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=73.47 E-value=15 Score=31.24 Aligned_cols=72 Identities=11% Similarity=0.081 Sum_probs=51.9
Q ss_pred hcChHHHHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHc------CCCceEeecCCCHHHHHHHHhhCCCCc
Q 029558 72 ALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNILENEMLRQGLKEYSSWPT 143 (191)
Q Consensus 72 ~~~~~~~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~------gV~y~~vdV~~d~~~r~~Lk~~sg~~t 143 (191)
.+++..++.++++-.+-.|.+|....-....=++=..++++|+++ ++.++.+|.+.+++..+...+..|...
T Consensus 11 sLS~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~ 88 (271)
T PF09822_consen 11 SLSDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQP 88 (271)
T ss_pred cCCHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCc
Confidence 577888999999888888888876311111356678899999988 688999999777776666554445444
No 262
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=72.75 E-value=11 Score=32.48 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=14.4
Q ss_pred cEEEEEecCCCCCCChhHHHHHHHHHHc
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVVQILKSL 116 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak~iL~~~ 116 (191)
-|+.|+. .|||.|..-...|.++
T Consensus 102 vvl~FwA-----swCp~c~~e~p~L~~L 124 (236)
T PLN02399 102 LLIVNVA-----SKCGLTSSNYSELSHL 124 (236)
T ss_pred EEEEEEc-----CCCcchHHHHHHHHHH
Confidence 3455554 5999998755555443
No 263
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=70.96 E-value=43 Score=27.70 Aligned_cols=103 Identities=14% Similarity=0.186 Sum_probs=64.6
Q ss_pred hHHHHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHc-CCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEE
Q 029558 75 PELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-NAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEF 153 (191)
Q Consensus 75 ~~~~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~-gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~ 153 (191)
+.+.+.+....+..+-++|.-.... .+=.+...+.+.|+++ |++.+.+++.++++..+.|.+. =.||+.|
T Consensus 18 ~~l~~~l~~~~~~~~~i~~IptAs~-~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~a------d~I~l~G-- 88 (212)
T cd03146 18 PAIDDLLLSLTKARPKVLFVPTASG-DRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEA------DVIYVGG-- 88 (212)
T ss_pred HHHHHHHHHhccCCCeEEEECCCCC-CHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcC------CEEEECC--
Confidence 4556677777656565666553222 2336788899999999 9988887765555555556533 3677777
Q ss_pred EeechhhHHHHH-----HHHhhcCcCCcceEEeeCCccc
Q 029558 154 FGGCDITVGKLM-----DFLNLLNFSSTIWLVVCDLYAF 187 (191)
Q Consensus 154 VGG~del~~~lk-----e~L~~lg~~~~~wl~~~~~~~~ 187 (191)
|....+.+.++ +.|++.--.+..-++.|-|+..
T Consensus 89 -G~~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa~i 126 (212)
T cd03146 89 -GNTFNLLAQWREHGLDAILKAALERGVVYIGWSAGSNC 126 (212)
T ss_pred -chHHHHHHHHHHcCHHHHHHHHHHCCCEEEEECHhHHh
Confidence 55555554443 4444432246777888877654
No 264
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=70.56 E-value=8.2 Score=29.39 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=16.2
Q ss_pred CCCCcccEEEECCEEEeechh
Q 029558 139 SSWPTFPQLYIEGEFFGGCDI 159 (191)
Q Consensus 139 sg~~tvP~IfI~G~~VGG~de 159 (191)
.|...+|.++|||+.+.|...
T Consensus 132 ~~i~~tPt~~inG~~~~~~~~ 152 (162)
T PF13462_consen 132 LGITGTPTFFINGKYVVGPYT 152 (162)
T ss_dssp HT-SSSSEEEETTCEEETTTS
T ss_pred cCCccccEEEECCEEeCCCCC
Confidence 378899999999999876443
No 265
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=70.48 E-value=16 Score=27.31 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=11.3
Q ss_pred CCChh-HHHHHHHHHHc
Q 029558 101 PQCGF-SHTVVQILKSL 116 (191)
Q Consensus 101 p~Cp~-C~kak~iL~~~ 116 (191)
.||++ |.+....|++.
T Consensus 32 ~~C~~~C~~~l~~l~~~ 48 (142)
T cd02968 32 THCPDVCPTTLANLAQA 48 (142)
T ss_pred CCCcccCHHHHHHHHHH
Confidence 49998 98766666553
No 266
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=69.47 E-value=4.9 Score=30.65 Aligned_cols=35 Identities=20% Similarity=0.183 Sum_probs=23.0
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHH----HHc----CCCceEeecC
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQIL----KSL----NAPFETVNIL 126 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL----~~~----gV~y~~vdV~ 126 (191)
...|++|.. +.||+|.+.-..+ +++ .+.+..+++.
T Consensus 13 ~~~v~~f~d-----~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~ 55 (162)
T PF13462_consen 13 PITVTEFFD-----FQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVP 55 (162)
T ss_dssp SEEEEEEE------TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESS
T ss_pred CeEEEEEEC-----CCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcc
Confidence 446788877 6999999775554 443 4556666664
No 267
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=68.19 E-value=13 Score=27.31 Aligned_cols=34 Identities=18% Similarity=0.314 Sum_probs=22.4
Q ss_pred HHHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHc
Q 029558 77 LKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL 116 (191)
Q Consensus 77 ~~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~ 116 (191)
+++.++++-++-.+++|..+ . ++|.+++++|++.
T Consensus 10 L~~~f~~l~~pV~l~~f~~~-----~-~~~~e~~~ll~e~ 43 (94)
T cd02974 10 LKAYLERLENPVELVASLDD-----S-EKSAELLELLEEI 43 (94)
T ss_pred HHHHHHhCCCCEEEEEEeCC-----C-cchHHHHHHHHHH
Confidence 34444444444456667663 4 8899999999886
No 268
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=67.28 E-value=33 Score=33.12 Aligned_cols=74 Identities=12% Similarity=0.185 Sum_probs=53.8
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHHH
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLMD 166 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lke 166 (191)
+++|+|.+.| .+-+.+.+.|.+.|++|..+|.| ++.-+.+++. ..|.++ |+..+ .+
T Consensus 400 ~~~vII~G~G-------r~G~~va~~L~~~g~~vvvID~d--~~~v~~~~~~----g~~v~~------GDat~-----~~ 455 (601)
T PRK03659 400 KPQVIIVGFG-------RFGQVIGRLLMANKMRITVLERD--ISAVNLMRKY----GYKVYY------GDATQ-----LE 455 (601)
T ss_pred cCCEEEecCc-------hHHHHHHHHHHhCCCCEEEEECC--HHHHHHHHhC----CCeEEE------eeCCC-----HH
Confidence 4678888665 77789999999999999888854 5555556553 344433 44444 68
Q ss_pred HHhhcCcCCcceEEeeCC
Q 029558 167 FLNLLNFSSTIWLVVCDL 184 (191)
Q Consensus 167 ~L~~lg~~~~~wl~~~~~ 184 (191)
.|++.|+..+..+.+|-.
T Consensus 456 ~L~~agi~~A~~vv~~~~ 473 (601)
T PRK03659 456 LLRAAGAEKAEAIVITCN 473 (601)
T ss_pred HHHhcCCccCCEEEEEeC
Confidence 899999999998888743
No 269
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=66.75 E-value=20 Score=29.73 Aligned_cols=38 Identities=13% Similarity=0.160 Sum_probs=27.5
Q ss_pred cCCcEEEEEecCCCCCCChhHHHHHHHHH---HcCCCc------eEeecCCC
Q 029558 86 TGNKVVLFMKGTKDFPQCGFSHTVVQILK---SLNAPF------ETVNILEN 128 (191)
Q Consensus 86 ~~~kVVIYsk~~~~~p~Cp~C~kak~iL~---~~gV~y------~~vdV~~d 128 (191)
..-.++-|..+ ||+.|+.-..+|+ +.|+++ .-+|+++.
T Consensus 59 GKV~lvn~~As-----wc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~ 105 (184)
T TIGR01626 59 GKVRVVHHIAG-----RTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDA 105 (184)
T ss_pred CCEEEEEEEec-----CCChhhccchHHHHHHHcCCCcccccceEEEECccc
Confidence 44567889987 9999997655554 457887 66787764
No 270
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=66.58 E-value=5.7 Score=30.87 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=22.6
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHc------CCCceEeec
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSL------NAPFETVNI 125 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~------gV~y~~vdV 125 (191)
..+|+.|.. +.||+|.+....+.++ ++.++.+.+
T Consensus 16 ~~~i~~f~D-----~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~ 55 (178)
T cd03019 16 KPEVIEFFS-----YGCPHCYNFEPILEAWVKKLPKDVKFEKVPV 55 (178)
T ss_pred CcEEEEEEC-----CCCcchhhhhHHHHHHHHhCCCCceEEEcCC
Confidence 456777776 7999999877666544 345555444
No 271
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=65.80 E-value=14 Score=32.36 Aligned_cols=76 Identities=18% Similarity=0.225 Sum_probs=44.6
Q ss_pred cEEEEEecCCCCCCChhHHHHHHHHHHc-----CCCceEeecCCCHHHHHHHHhhCCCCcccEEEE--CCEEEeech---
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFFGGCD--- 158 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak~iL~~~-----gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI--~G~~VGG~d--- 158 (191)
.|||+... |.++-|..+-+.|..+ .+.|..+....-+ +.+......+|.|++ +|+.++.+-
T Consensus 148 ~VVVHiY~----~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-----~~~~f~~~~LPtllvYk~G~l~~~~V~l~ 218 (265)
T PF02114_consen 148 WVVVHIYE----PGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-----ASENFPDKNLPTLLVYKNGDLIGNFVGLT 218 (265)
T ss_dssp EEEEEEE-----TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-----TTTTS-TTC-SEEEEEETTEEEEEECTGG
T ss_pred EEEEEEEe----CCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-----cccCCcccCCCEEEEEECCEEEEeEEehH
Confidence 46666665 6888898888888776 4556655543211 222234557888755 897665432
Q ss_pred ------hhHHHHHHHHhhcCc
Q 029558 159 ------ITVGKLMDFLNLLNF 173 (191)
Q Consensus 159 ------el~~~lke~L~~lg~ 173 (191)
-..+.++.+|...|+
T Consensus 219 ~~~g~df~~~dlE~~L~~~G~ 239 (265)
T PF02114_consen 219 DLLGDDFFTEDLEAFLIEYGV 239 (265)
T ss_dssp GCT-TT--HHHHHHHHHTTTS
T ss_pred HhcCCCCCHHHHHHHHHHcCC
Confidence 222347788888776
No 272
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=65.30 E-value=13 Score=30.65 Aligned_cols=50 Identities=6% Similarity=0.154 Sum_probs=30.8
Q ss_pred HHHHHHHHHcCCCceEee-cCCCHHHHHH------HHhhCCCCcccEEEECCEEEee
Q 029558 107 HTVVQILKSLNAPFETVN-ILENEMLRQG------LKEYSSWPTFPQLYIEGEFFGG 156 (191)
Q Consensus 107 ~kak~iL~~~gV~y~~vd-V~~d~~~r~~------Lk~~sg~~tvP~IfI~G~~VGG 156 (191)
...++++.+.|++-+.++ ...++..++. +.+..|-..+|.++|||+++-+
T Consensus 124 ~~L~~~a~~~Gld~~~f~~~l~s~~~~~~v~~~~~~a~~~gI~gtPtfiInGky~v~ 180 (207)
T PRK10954 124 ADIRDVFIKAGVKGEDYDAAWNSFVVKSLVAQQEKAAADLQLRGVPAMFVNGKYMVN 180 (207)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCCCCCEEEECCEEEEc
Confidence 467778888888754332 1122222222 2234488999999999998644
No 273
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=64.14 E-value=7.6 Score=34.99 Aligned_cols=56 Identities=21% Similarity=0.257 Sum_probs=34.6
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHcCC----CceEeecCCCHHHHHHHHhhCCCCcccEEEE
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNA----PFETVNILENEMLRQGLKEYSSWPTFPQLYI 149 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV----~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI 149 (191)
..-++.|.. |||++|.+....+.+..- ......|+. ..-..+.+..+...+|.+.+
T Consensus 48 ~~~~v~fya-----pwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~--~~~~~~~~~y~i~gfPtl~~ 107 (383)
T KOG0191|consen 48 SPWLVEFYA-----PWCGHCKKLAPTYKKLAKALKGKVKIGAVDC--DEHKDLCEKYGIQGFPTLKV 107 (383)
T ss_pred CceEEEEEC-----CCCcchhhhchHHHHHHHHhcCceEEEEeCc--hhhHHHHHhcCCccCcEEEE
Confidence 445666666 699999988776665422 222333432 23344555668889998866
No 274
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=61.68 E-value=47 Score=25.11 Aligned_cols=69 Identities=13% Similarity=0.208 Sum_probs=37.3
Q ss_pred HHHHHHhhcCC-cEEEEEecCCCCCCChhHH------HHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEE
Q 029558 78 KSTLDKVVTGN-KVVLFMKGTKDFPQCGFSH------TVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYI 149 (191)
Q Consensus 78 ~~~l~~~i~~~-kVVIYsk~~~~~p~Cp~C~------kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI 149 (191)
++.++.+.++. .++||--+--...+|.||+ .++++|++. .=.--.|+...+. ..+....+..++|.+.+
T Consensus 7 ~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~~-fv~w~~dv~~~eg--~~la~~l~~~~~P~~~~ 82 (116)
T cd02991 7 SQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINTR-MLFWACSVAKPEG--YRVSQALRERTYPFLAM 82 (116)
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHcC-EEEEEEecCChHH--HHHHHHhCCCCCCEEEE
Confidence 44555544454 4677777511123788886 445566542 2122346655433 33444556779998855
No 275
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=59.95 E-value=61 Score=23.12 Aligned_cols=54 Identities=13% Similarity=0.192 Sum_probs=35.5
Q ss_pred HHHHHHhh-cCCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHh
Q 029558 78 KSTLDKVV-TGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKE 137 (191)
Q Consensus 78 ~~~l~~~i-~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~ 137 (191)
.+.+.+.. ...++++|.. ....++.+.+.|.+.+.++..+.=..++..+..+.+
T Consensus 18 ~~~i~~~~~~~~~~lvf~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 72 (131)
T cd00079 18 LELLKEHLKKGGKVLIFCP------SKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLK 72 (131)
T ss_pred HHHHHhcccCCCcEEEEeC------cHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHH
Confidence 34444443 4568899977 678899999999987777666654444444455443
No 276
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=59.65 E-value=59 Score=31.58 Aligned_cols=73 Identities=18% Similarity=0.220 Sum_probs=52.1
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHHH
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLMD 166 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lke 166 (191)
.++|+|.+.| .+=+.+-+.|.+.|+++..+|.| ++.-+.+++. .++.+| |+..+ .+
T Consensus 400 ~~~vII~G~G-------r~G~~va~~L~~~g~~vvvID~d--~~~v~~~~~~----g~~v~~------GDat~-----~~ 455 (621)
T PRK03562 400 QPRVIIAGFG-------RFGQIVGRLLLSSGVKMTVLDHD--PDHIETLRKF----GMKVFY------GDATR-----MD 455 (621)
T ss_pred cCcEEEEecC-------hHHHHHHHHHHhCCCCEEEEECC--HHHHHHHHhc----CCeEEE------EeCCC-----HH
Confidence 5789988665 55678889999999999888764 4444555543 344433 44444 68
Q ss_pred HHhhcCcCCcceEEeeC
Q 029558 167 FLNLLNFSSTIWLVVCD 183 (191)
Q Consensus 167 ~L~~lg~~~~~wl~~~~ 183 (191)
.|++.|+..+..+.+|-
T Consensus 456 ~L~~agi~~A~~vvv~~ 472 (621)
T PRK03562 456 LLESAGAAKAEVLINAI 472 (621)
T ss_pred HHHhcCCCcCCEEEEEe
Confidence 89999999999888874
No 277
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=59.44 E-value=1.1e+02 Score=26.50 Aligned_cols=68 Identities=12% Similarity=0.217 Sum_probs=43.5
Q ss_pred HHHHHHhhcCC--cEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCC--HHHHHHHHhhCCCCcccEEEECC
Q 029558 78 KSTLDKVVTGN--KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYIEG 151 (191)
Q Consensus 78 ~~~l~~~i~~~--kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d--~~~r~~Lk~~sg~~tvP~IfI~G 151 (191)
.+.+.+.++.+ +|..-=....+..+=+|-+++++.|.++|.....+++... +++...|.+ .=.|||+|
T Consensus 21 ~~~i~n~l~g~~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~------~d~IyVgG 92 (224)
T COG3340 21 LPFIANFLQGKRKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPPLAAIENKLMK------ADIIYVGG 92 (224)
T ss_pred hHHHHHHhcCCCceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCCHHHHHHhhhh------ccEEEECC
Confidence 44555545553 4444333334445678999999999999999999998764 334444433 23566666
No 278
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=59.32 E-value=14 Score=28.82 Aligned_cols=47 Identities=23% Similarity=0.374 Sum_probs=31.1
Q ss_pred CCChhHH-----------HHHHHHHHcCCC--ceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEE
Q 029558 101 PQCGFSH-----------TVVQILKSLNAP--FETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFF 154 (191)
Q Consensus 101 p~Cp~C~-----------kak~iL~~~gV~--y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~V 154 (191)
..|+-|. ++...|..+|+. ++++.+++.+..++. -.-|.|.|||..+
T Consensus 13 ~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~~~~~~~-------~~S~~I~inG~pi 72 (120)
T PF10865_consen 13 KTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEEEFARQP-------LESPTIRINGRPI 72 (120)
T ss_pred CcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChHHHhhcc-------cCCCeeeECCEeh
Confidence 3677775 445557777886 667777654333332 3779999999765
No 279
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=59.09 E-value=4.7 Score=38.41 Aligned_cols=22 Identities=23% Similarity=0.617 Sum_probs=18.6
Q ss_pred CCChhHHHHHHHHHHcCCCceE
Q 029558 101 PQCGFSHTVVQILKSLNAPFET 122 (191)
Q Consensus 101 p~Cp~C~kak~iL~~~gV~y~~ 122 (191)
|||++|++...++++++-.|+.
T Consensus 394 PWCgHCk~laP~~eeLAe~~~~ 415 (493)
T KOG0190|consen 394 PWCGHCKALAPIYEELAEKYKD 415 (493)
T ss_pred cccchhhhhhhHHHHHHHHhcC
Confidence 7999999999999998766543
No 280
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=59.02 E-value=32 Score=27.23 Aligned_cols=15 Identities=20% Similarity=0.182 Sum_probs=10.3
Q ss_pred C-ChhHHHHHHHHHHc
Q 029558 102 Q-CGFSHTVVQILKSL 116 (191)
Q Consensus 102 ~-Cp~C~kak~iL~~~ 116 (191)
| ||.|.+-...|.++
T Consensus 55 ~~cp~C~~e~~~l~~~ 70 (167)
T PRK00522 55 IDTGVCATSVRKFNQE 70 (167)
T ss_pred CCCCccHHHHHHHHHH
Confidence 6 88998766555553
No 281
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=58.43 E-value=37 Score=27.40 Aligned_cols=26 Identities=19% Similarity=0.014 Sum_probs=15.5
Q ss_pred CChhHHHHHHHH-------HHcCCCceEeecCC
Q 029558 102 QCGFSHTVVQIL-------KSLNAPFETVNILE 127 (191)
Q Consensus 102 ~Cp~C~kak~iL-------~~~gV~y~~vdV~~ 127 (191)
|||.|.+-...| .+.|+.+--+.++.
T Consensus 43 ~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~ 75 (187)
T TIGR03137 43 FTFVCPTELEDLADKYAELKKLGVEVYSVSTDT 75 (187)
T ss_pred cCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 999998755444 33455554444443
No 282
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=58.23 E-value=32 Score=33.53 Aligned_cols=64 Identities=16% Similarity=0.177 Sum_probs=40.9
Q ss_pred HHHHhhcCCc---EEE-EEecCCCCCCChhHHHHHHHHH--------HcCCCceEeecCC-CHHHHHHHHhhCCCCcccE
Q 029558 80 TLDKVVTGNK---VVL-FMKGTKDFPQCGFSHTVVQILK--------SLNAPFETVNILE-NEMLRQGLKEYSSWPTFPQ 146 (191)
Q Consensus 80 ~l~~~i~~~k---VVI-Ysk~~~~~p~Cp~C~kak~iL~--------~~gV~y~~vdV~~-d~~~r~~Lk~~sg~~tvP~ 146 (191)
+++++..+++ |.+ |+. .||--|+.-++..- -.++-+-..|++. |++.++.|+++ |.-.+|.
T Consensus 464 ~L~~~la~~~~~pVmlDfyA-----dWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~-~~~G~P~ 537 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYA-----DWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRL-GVFGVPT 537 (569)
T ss_pred HHHHHHHhCCCCcEEEeeeh-----hHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHc-CCCCCCE
Confidence 4555554444 443 333 49999997766543 2244455667775 67777777766 7888888
Q ss_pred EEE
Q 029558 147 LYI 149 (191)
Q Consensus 147 IfI 149 (191)
+.+
T Consensus 538 ~~f 540 (569)
T COG4232 538 YLF 540 (569)
T ss_pred EEE
Confidence 755
No 283
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=56.92 E-value=11 Score=26.92 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=21.0
Q ss_pred CCChhHHHHHHHHHHcCCCceEee
Q 029558 101 PQCGFSHTVVQILKSLNAPFETVN 124 (191)
Q Consensus 101 p~Cp~C~kak~iL~~~gV~y~~vd 124 (191)
..-+|++|+.++|+++|++|+.+-
T Consensus 13 ~evGF~rk~L~I~E~~~is~Eh~P 36 (76)
T cd04911 13 REVGFGRKLLSILEDNGISYEHMP 36 (76)
T ss_pred chhcHHHHHHHHHHHcCCCEeeec
Confidence 357999999999999999998764
No 284
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=56.24 E-value=22 Score=33.33 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=23.5
Q ss_pred HHHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHc
Q 029558 77 LKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL 116 (191)
Q Consensus 77 ~~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~ 116 (191)
+++.++++.++-.+++|.. .|++|.+++++|++.
T Consensus 10 l~~~~~~~~~~v~~~~~~~------~~~~~~~~~~~~~~~ 43 (517)
T PRK15317 10 LKQYLELLERPIELVASLD------DSEKSAELKELLEEI 43 (517)
T ss_pred HHHHHHhCCCCEEEEEEeC------CCchHHHHHHHHHHH
Confidence 3444444444445666755 699999999999987
No 285
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=56.13 E-value=23 Score=31.90 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=18.9
Q ss_pred hcCCcEEEEEecCCCCCCChhHHHHHHHHHHcC
Q 029558 85 VTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLN 117 (191)
Q Consensus 85 i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~g 117 (191)
.+...+|.|.. |||++|++....+++..
T Consensus 161 ~~~~~lv~f~a-----Pwc~~ck~l~~~~~~~a 188 (383)
T KOG0191|consen 161 SDADWLVEFYA-----PWCGHCKKLAPEWEKLA 188 (383)
T ss_pred cCcceEEEEec-----cccHHhhhcChHHHHHH
Confidence 34445666644 89999998866666553
No 286
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=56.13 E-value=64 Score=22.22 Aligned_cols=68 Identities=19% Similarity=0.197 Sum_probs=42.8
Q ss_pred hHHHHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEE
Q 029558 75 PELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYI 149 (191)
Q Consensus 75 ~~~~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI 149 (191)
+.+++..++.-+..++.+.+-+ .-..=.+.++.+++.+.++..+.+.++. +..+.+..+...+|.+++
T Consensus 21 ~~l~~l~~~~~~~~~v~~v~Vs-----~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~i~~iP~~~l 88 (95)
T PF13905_consen 21 PKLKELYKKYKKKDDVEFVFVS-----LDEDEEEWKKFLKKNNFPWYNVPFDDDN--NSELLKKYGINGIPTLVL 88 (95)
T ss_dssp HHHHHHHHHHTTTTTEEEEEEE------SSSHHHHHHHHHTCTTSSEEEETTTHH--HHHHHHHTT-TSSSEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEEEE-----eCCCHHHHHHHHHhcCCCceEEeeCcch--HHHHHHHCCCCcCCEEEE
Confidence 4444444444434455443333 3355678899999998887777765433 556777778889999987
No 287
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=54.92 E-value=42 Score=26.05 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=33.4
Q ss_pred hcChHHHHHHHHhhcC-CcEEEEEecCCCCCCChhHH------------HHHHHHHHcCCCceEeecCC
Q 029558 72 ALTPELKSTLDKVVTG-NKVVLFMKGTKDFPQCGFSH------------TVVQILKSLNAPFETVNILE 127 (191)
Q Consensus 72 ~~~~~~~~~l~~~i~~-~kVVIYsk~~~~~p~Cp~C~------------kak~iL~~~gV~y~~vdV~~ 127 (191)
...+++.+.++++.+. ..|++.+.- ...... ...++|++++++|.++-+-.
T Consensus 24 ~~~~~~ie~L~~l~~~G~~IiiaTGR-----~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~~k 87 (126)
T TIGR01689 24 APILAVIEKLRHYKALGFEIVISSSR-----NMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYVGK 87 (126)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCC-----CchhhhccccccchhhHHHHHHHHHHcCCCCceEEeCC
Confidence 3456777778776444 445555442 333334 77999999999998877643
No 288
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=53.55 E-value=10 Score=34.53 Aligned_cols=65 Identities=23% Similarity=0.481 Sum_probs=38.6
Q ss_pred HHHhhcCCcEE--EEEecCCCCCCChhHHHHHHHHHHcCCCc-----------eEeecCCCHHHHHHHHhhCCCCcccEE
Q 029558 81 LDKVVTGNKVV--LFMKGTKDFPQCGFSHTVVQILKSLNAPF-----------ETVNILENEMLRQGLKEYSSWPTFPQL 147 (191)
Q Consensus 81 l~~~i~~~kVV--IYsk~~~~~p~Cp~C~kak~iL~~~gV~y-----------~~vdV~~d~~~r~~Lk~~sg~~tvP~I 147 (191)
++.++..+.+| -|..+ ||+|+++.+.++.+..-.| -.+|-+.. ..|........+|++
T Consensus 6 ~~~il~s~elvfv~FyAd-----WCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e----~~ia~ky~I~KyPTl 76 (375)
T KOG0912|consen 6 IDSILDSNELVFVNFYAD-----WCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE----DDIADKYHINKYPTL 76 (375)
T ss_pred HHHhhccceEEeeeeehh-----hchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh----hHHhhhhccccCcee
Confidence 45566667654 45554 9999999999998864322 22333333 334444445566665
Q ss_pred --EECCEEE
Q 029558 148 --YIEGEFF 154 (191)
Q Consensus 148 --fI~G~~V 154 (191)
|.||+.+
T Consensus 77 KvfrnG~~~ 85 (375)
T KOG0912|consen 77 KVFRNGEMM 85 (375)
T ss_pred eeeeccchh
Confidence 6688644
No 289
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=52.92 E-value=84 Score=22.90 Aligned_cols=59 Identities=25% Similarity=0.299 Sum_probs=35.9
Q ss_pred ChHHHHHHHHhhcCCc-EEEEEecCCCCCCChhH-HHHHHHHHHcCCCceEeecCC-CHHHHHHHHhh
Q 029558 74 TPELKSTLDKVVTGNK-VVLFMKGTKDFPQCGFS-HTVVQILKSLNAPFETVNILE-NEMLRQGLKEY 138 (191)
Q Consensus 74 ~~~~~~~l~~~i~~~k-VVIYsk~~~~~p~Cp~C-~kak~iL~~~gV~y~~vdV~~-d~~~r~~Lk~~ 138 (191)
-+...+.++.+.+.++ +++.+. +.... ....+.|+++|++...-+|-. .....+.|++.
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTN------ns~~s~~~~~~~L~~~Gi~~~~~~i~ts~~~~~~~l~~~ 77 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTN------NSSRSREEYAKKLKKLGIPVDEDEIITSGMAAAEYLKEH 77 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES-------SSS-HHHHHHHHHHTTTT--GGGEEEHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHcCCCEEEEeC------CCCCCHHHHHHHHHhcCcCCCcCEEEChHHHHHHHHHhc
Confidence 3455677777777765 555555 33333 677778899999876655533 35667777774
No 290
>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat
Probab=52.43 E-value=19 Score=25.33 Aligned_cols=28 Identities=32% Similarity=0.425 Sum_probs=22.2
Q ss_pred CcccEEEECCEEEeechhhHHHHHHHHhhc
Q 029558 142 PTFPQLYIEGEFFGGCDITVGKLMDFLNLL 171 (191)
Q Consensus 142 ~tvP~IfI~G~~VGG~del~~~lke~L~~l 171 (191)
..=|.+.|||+.+++.+. +.+.+++++|
T Consensus 53 ~~gP~~~v~~~~~~~~~~--e~i~~il~~~ 80 (80)
T cd03081 53 ACSPAAMIDGEVHGRVDP--EKFDALLAEL 80 (80)
T ss_pred CCCCEEEECCEEECCCCH--HHHHHHHHcC
Confidence 456999999999999887 7777776653
No 291
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=52.18 E-value=77 Score=22.81 Aligned_cols=54 Identities=15% Similarity=0.148 Sum_probs=35.3
Q ss_pred HHHHHhhcCCcEEEEEecCCCCCCChh--HHHHHHHHHHcCCCceEeecCCCHHHHHHHHh
Q 029558 79 STLDKVVTGNKVVLFMKGTKDFPQCGF--SHTVVQILKSLNAPFETVNILENEMLRQGLKE 137 (191)
Q Consensus 79 ~~l~~~i~~~kVVIYsk~~~~~p~Cp~--C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~ 137 (191)
..+++.+....+||+..+ .+.+ +..+++.-++.++++...+-..-..+.+.|.+
T Consensus 40 ~~l~~~i~~aD~VIv~t~-----~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~l~~~l~~ 95 (97)
T PF10087_consen 40 SRLPSKIKKADLVIVFTD-----YVSHNAMWKVKKAAKKYGIPIIYSRSRGVSSLERALER 95 (97)
T ss_pred hHHHHhcCCCCEEEEEeC-----CcChHHHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHh
Confidence 457777777787777775 4444 67788888888888777664333455555543
No 292
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=50.94 E-value=23 Score=26.61 Aligned_cols=35 Identities=11% Similarity=-0.027 Sum_probs=21.9
Q ss_pred HHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHHH
Q 029558 130 MLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLMD 166 (191)
Q Consensus 130 ~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lke 166 (191)
+..+.|.+.-.--.-|.|..|++.+-|+++ +.+++
T Consensus 78 e~i~~l~~~P~LikRPIi~~~~~~~vG~~~--e~i~~ 112 (114)
T TIGR00014 78 ELLDAMVAHPILLERPIVVAGDGARIGRPP--ENVLD 112 (114)
T ss_pred HHHHHHHHCcCcccCCeEEECCEEEEcCCH--HHHHH
Confidence 344444443333345999999998889987 44443
No 293
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=50.67 E-value=1e+02 Score=30.77 Aligned_cols=70 Identities=19% Similarity=0.366 Sum_probs=42.2
Q ss_pred HHHHHhhcCCcEEEEEecCCCCCCChhHHH----------HHHHHHHcCCCceEeecCC--CH----HHHHHHHhhCCCC
Q 029558 79 STLDKVVTGNKVVLFMKGTKDFPQCGFSHT----------VVQILKSLNAPFETVNILE--NE----MLRQGLKEYSSWP 142 (191)
Q Consensus 79 ~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~k----------ak~iL~~~gV~y~~vdV~~--d~----~~r~~Lk~~sg~~ 142 (191)
+.++++..+++-|+-+-|. .+|.+|+- +-++|++ .|..|-||. -| -..+..+.++|+.
T Consensus 34 eAf~~A~~edkPIflSIGy---s~CHWChVM~~ESf~d~eiA~~lN~---~FV~IKVDREERPDvD~~Ym~~~q~~tG~G 107 (667)
T COG1331 34 EAFAKAKEEDKPILLSIGY---STCHWCHVMAHESFEDPEIAAILNE---NFVPVKVDREERPDVDSLYMNASQAITGQG 107 (667)
T ss_pred HHHHHHHHhCCCEEEEecc---ccccchHHHhhhcCCCHHHHHHHHh---CceeeeEChhhccCHHHHHHHHHHHhccCC
Confidence 5566666666655555432 48999973 3334443 354555543 23 3455566788999
Q ss_pred cccEEEE---CCEEE
Q 029558 143 TFPQLYI---EGEFF 154 (191)
Q Consensus 143 tvP~IfI---~G~~V 154 (191)
.+|.-++ ||+++
T Consensus 108 GWPLtVfLTPd~kPF 122 (667)
T COG1331 108 GWPLTVFLTPDGKPF 122 (667)
T ss_pred CCceeEEECCCCcee
Confidence 9997766 77754
No 294
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=50.32 E-value=98 Score=22.60 Aligned_cols=45 Identities=13% Similarity=0.157 Sum_probs=30.1
Q ss_pred HHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCccc-EEEE--CCEEE
Q 029558 106 SHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFP-QLYI--EGEFF 154 (191)
Q Consensus 106 C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP-~IfI--~G~~V 154 (191)
-..+++++++++++|..+.++.+.+ +....+...+| .+++ +|+.+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~D~~~~----~~~~~~v~~~P~~~~ld~~G~v~ 114 (127)
T cd03010 67 PENALAWLARHGNPYAAVGFDPDGR----VGIDLGVYGVPETFLIDGDGIIR 114 (127)
T ss_pred HHHHHHHHHhcCCCCceEEECCcch----HHHhcCCCCCCeEEEECCCceEE
Confidence 4677889999999987666665444 33334677889 5566 46533
No 295
>PRK14368 Maf-like protein; Provisional
Probab=50.05 E-value=1.2e+02 Score=25.17 Aligned_cols=86 Identities=15% Similarity=0.117 Sum_probs=49.4
Q ss_pred hcCCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEe--ecCCC------H-HHHHH--------HHh-hC-----CC
Q 029558 85 VTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETV--NILEN------E-MLRQG--------LKE-YS-----SW 141 (191)
Q Consensus 85 i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~v--dV~~d------~-~~r~~--------Lk~-~s-----g~ 141 (191)
+..+++++=+.+ .+=+++|+++|++|+.+ |++++ + +.-.. +.+ .. +.
T Consensus 2 ~~~~~lILAS~S----------prR~eLL~~~g~~f~v~~~~iDE~~~~~~~p~~~v~~lA~~KA~~v~~~~~~~~vI~a 71 (193)
T PRK14368 2 MANSPIVLASAS----------PRRSELLASAGIEFDVVPADIPEEPLPGEEPVDHVLRLAREKARAAAALAEGRFFIGA 71 (193)
T ss_pred CCCCcEEEeCCC----------HHHHHHHHHCCCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 446677777664 66778999999999866 44441 2 11111 111 10 12
Q ss_pred CcccEEEECCEEEeechhhHHHHHHHHhhcCcCCcceEEee
Q 029558 142 PTFPQLYIEGEFFGGCDITVGKLMDFLNLLNFSSTIWLVVC 182 (191)
Q Consensus 142 ~tvP~IfI~G~~VGG~del~~~lke~L~~lg~~~~~wl~~~ 182 (191)
.| +|.+||+.+|=..+..++.+-+...-|-.-..+-+||
T Consensus 72 DT--vV~~~g~ilgKP~~~~eA~~~L~~lsG~~h~v~Tgv~ 110 (193)
T PRK14368 72 DT--IVVCDGEIMGKPKDEADAVRMLKKLSGVPHEVITGFA 110 (193)
T ss_pred Cc--EEEECCEEecCCCCHHHHHHHHHHhCCCCcEEEEEEE
Confidence 23 3567888888666655665544444555555566666
No 296
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=49.89 E-value=41 Score=25.98 Aligned_cols=47 Identities=17% Similarity=0.277 Sum_probs=32.6
Q ss_pred CChhHHHHHHHHHHc-----CCCceEeecCCCHHHHHHHHhhCC--CCcccEEEECC
Q 029558 102 QCGFSHTVVQILKSL-----NAPFETVNILENEMLRQGLKEYSS--WPTFPQLYIEG 151 (191)
Q Consensus 102 ~Cp~C~kak~iL~~~-----gV~y~~vdV~~d~~~r~~Lk~~sg--~~tvP~IfI~G 151 (191)
.||+|..+..+|... .++.+.++.... |+.+.+..| ..+.|+++.++
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RP---R~~vi~llGE~~QslPvLVL~~ 76 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRP---RQAVIALLGEANQSLPVLVLAD 76 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCc---hHHHHHHhChhccCCCEEEeCC
Confidence 499999999999876 455666665432 344444444 67889998865
No 297
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=49.83 E-value=46 Score=27.27 Aligned_cols=27 Identities=7% Similarity=-0.021 Sum_probs=15.6
Q ss_pred CCChhHHHHHHHHH-------HcCCCceEeecCC
Q 029558 101 PQCGFSHTVVQILK-------SLNAPFETVNILE 127 (191)
Q Consensus 101 p~Cp~C~kak~iL~-------~~gV~y~~vdV~~ 127 (191)
.+||.|..-...|. +.|+.+--+.++.
T Consensus 36 ~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~ 69 (203)
T cd03016 36 DFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDS 69 (203)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 38999986544443 3455554555443
No 298
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=49.12 E-value=34 Score=32.07 Aligned_cols=34 Identities=24% Similarity=0.254 Sum_probs=22.7
Q ss_pred HHHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHc
Q 029558 77 LKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL 116 (191)
Q Consensus 77 ~~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~ 116 (191)
+++.++++.++-.+++|.. .|++|.+++++|++.
T Consensus 10 l~~~~~~~~~~v~~~~~~~------~~~~~~~~~~~~~~~ 43 (515)
T TIGR03140 10 LKSYLASLENPVTLVLSAG------SHEKSKELLELLDEI 43 (515)
T ss_pred HHHHHHhcCCCEEEEEEeC------CCchhHHHHHHHHHH
Confidence 3444444333344556655 689999999999887
No 299
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=48.82 E-value=57 Score=24.74 Aligned_cols=73 Identities=19% Similarity=0.171 Sum_probs=42.4
Q ss_pred CChhHHH-HHHHHHHcCCCceEeecCC--CHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHHHHHhhcCcCCcce
Q 029558 102 QCGFSHT-VVQILKSLNAPFETVNILE--NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLMDFLNLLNFSSTIW 178 (191)
Q Consensus 102 ~Cp~C~k-ak~iL~~~gV~y~~vdV~~--d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lke~L~~lg~~~~~w 178 (191)
.|-.|.. ++++|.+.+|+.+.+.+.. ..+.. -..++.+.. -.|-.||.|.|=-=. +.+=+-|---|++...|
T Consensus 20 qC~~cA~Al~~~L~~~gI~Gk~i~l~T~~~~~~~-I~sd~~~~~--~sIt~NG~H~gI~V~--~~VFDNl~p~G~~r~dW 94 (100)
T PF15643_consen 20 QCVECASALKQFLKQAGIPGKIIRLYTGYHEGPF-IYSDRLGPQ--ESITTNGRHYGIEVG--EIVFDNLHPEGMSREDW 94 (100)
T ss_pred ehHHHHHHHHHHHHHCCCCceEEEEEecCCCCce-ehhhhhcCC--cceeeCCEEEEEEEe--eEEecccCcccCCHHHH
Confidence 7999965 5899999999999888754 21111 122222111 457778887652111 22223344556666667
Q ss_pred E
Q 029558 179 L 179 (191)
Q Consensus 179 l 179 (191)
|
T Consensus 95 l 95 (100)
T PF15643_consen 95 L 95 (100)
T ss_pred H
Confidence 5
No 300
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=48.35 E-value=16 Score=27.27 Aligned_cols=38 Identities=13% Similarity=0.057 Sum_probs=18.9
Q ss_pred HHhhCCCCcccEEEECCEEEe--echhhHHHHHHHHhhcC
Q 029558 135 LKEYSSWPTFPQLYIEGEFFG--GCDITVGKLMDFLNLLN 172 (191)
Q Consensus 135 Lk~~sg~~tvP~IfI~G~~VG--G~del~~~lke~L~~lg 172 (191)
+.........-..+.+|++.= ..+++.+.++.+-+...
T Consensus 45 i~~~~~~~~~~i~l~GGEPll~~~~~~l~~i~~~~k~~~~ 84 (139)
T PF13353_consen 45 IEELKNYGIKGIVLTGGEPLLHENYDELLEILKYIKEKFP 84 (139)
T ss_dssp CHHHCCCCCCEEEEECSTGGGHHSHHHHHHHHHHHHHTT-
T ss_pred hhHHhcCCceEEEEcCCCeeeeccHhHHHHHHHHHHHhCC
Confidence 333333333444455677655 56666666555444433
No 301
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=47.12 E-value=1.1e+02 Score=24.08 Aligned_cols=75 Identities=11% Similarity=0.175 Sum_probs=45.4
Q ss_pred cEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHHHHH
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLMDFL 168 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lke~L 168 (191)
.|++++-|-......+....+.+.|++.|+..-.+-+ . ...+++|+.+.+.+. .+|.- ...++.|....+++.
T Consensus 106 ~villTDG~~~~~~~~~~~~~a~~l~~~gv~i~~vgv-~-~~~~~~L~~iA~~~~--~~f~~---~~~~~~l~~~~~~~~ 178 (185)
T cd01474 106 VIIALTDGQLLLNGHKYPEHEAKLSRKLGAIVYCVGV-T-DFLKSQLINIADSKE--YVFPV---TSGFQALSGIIESVV 178 (185)
T ss_pred EEEEEcCCCcCCCCCcchHHHHHHHHHcCCEEEEEee-c-hhhHHHHHHHhCCCC--eeEec---CccHHHHHHHHHHHH
Confidence 3677776643222345667777889999998777777 2 223566888876552 22210 135677766666766
Q ss_pred hh
Q 029558 169 NL 170 (191)
Q Consensus 169 ~~ 170 (191)
++
T Consensus 179 ~~ 180 (185)
T cd01474 179 KK 180 (185)
T ss_pred Hh
Confidence 65
No 302
>PTZ00494 tuzin-like protein; Provisional
Probab=46.15 E-value=72 Score=31.04 Aligned_cols=97 Identities=11% Similarity=0.146 Sum_probs=59.9
Q ss_pred HHHHHHhhcCC-cEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCH-HHHHHHHhhCCCCcccEEEECCEEEe
Q 029558 78 KSTLDKVVTGN-KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENE-MLRQGLKEYSSWPTFPQLYIEGEFFG 155 (191)
Q Consensus 78 ~~~l~~~i~~~-kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~-~~r~~Lk~~sg~~tvP~IfI~G~~VG 155 (191)
.+.+.++...+ +|++|+.. -+|+-|.-.+....+.+++-..+||...+ .++--+|.+ .+|.|-+-|.+..
T Consensus 384 RqvL~qld~aHPRIvV~TG~----~GcGKSslcRsAvrkE~~paV~VDVRg~EDtLrsVVKAL----gV~nve~CGDlLd 455 (664)
T PTZ00494 384 RSVLTQMAPSHPRIVALAGG----SGGGRCVPCRRAVRVEGVALVHVDVGGTEDTLRSVVRAL----GVSNVEVCGDLLG 455 (664)
T ss_pred HHHHhhccCCCCcEEEEecC----CCCCchHHHHHHHHHcCCCeEEEEecCCcchHHHHHHHh----CCCChhhhccHHH
Confidence 44555555554 68888875 58999999999999999999999996543 344445554 6777766553221
Q ss_pred echhhHHHHHHHH-hhcCcCCcceEEeeCCc
Q 029558 156 GCDITVGKLMDFL-NLLNFSSTIWLVVCDLY 185 (191)
Q Consensus 156 G~del~~~lke~L-~~lg~~~~~wl~~~~~~ 185 (191)
= +.+.....- +.-|-.--+.|+.+||-
T Consensus 456 F---I~ea~~~A~~~~~g~~P~lVlkLREGs 483 (664)
T PTZ00494 456 F---VEEAMRGATVKASDGVPFLVMRLREGS 483 (664)
T ss_pred H---HHHHHHHHHHhcCCCCCEEEEEeccCC
Confidence 1 111222222 23343455677777774
No 303
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=45.90 E-value=84 Score=27.45 Aligned_cols=84 Identities=19% Similarity=0.196 Sum_probs=55.8
Q ss_pred HHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHcCCC-ceEeecCCC-----HHHHHHHHhhCCCCcccEEEECC
Q 029558 78 KSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAP-FETVNILEN-----EMLRQGLKEYSSWPTFPQLYIEG 151 (191)
Q Consensus 78 ~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~-y~~vdV~~d-----~~~r~~Lk~~sg~~tvP~IfI~G 151 (191)
+..++.. ..+.|.+|+.. +|+-+--|+.+|.+++-+ ...|+|..+ +++.+.|. +.+.-=+||+|+
T Consensus 44 ~~Fl~G~-pannvLL~G~r-----GtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~l~---~~~~kFIlf~DD 114 (249)
T PF05673_consen 44 EQFLQGL-PANNVLLWGAR-----GTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDLLR---DRPYKFILFCDD 114 (249)
T ss_pred HHHHcCC-CCcceEEecCC-----CCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHHHh---cCCCCEEEEecC
Confidence 3344433 56789999874 999999999999987543 666666542 34444443 444445688898
Q ss_pred EEEeechhhHHHHHHHHhh
Q 029558 152 EFFGGCDITVGKLMDFLNL 170 (191)
Q Consensus 152 ~~VGG~del~~~lke~L~~ 170 (191)
=-+...|+-...+|.+|+.
T Consensus 115 LsFe~~d~~yk~LKs~LeG 133 (249)
T PF05673_consen 115 LSFEEGDTEYKALKSVLEG 133 (249)
T ss_pred CCCCCCcHHHHHHHHHhcC
Confidence 6666666666667777765
No 304
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=44.95 E-value=48 Score=25.53 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=23.1
Q ss_pred HHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHHHHH
Q 029558 130 MLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLMDFL 168 (191)
Q Consensus 130 ~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lke~L 168 (191)
+..+.|.+...-=.-|.|+.+++.+-|+++ +.++++|
T Consensus 78 e~i~ll~~~p~LikRPIi~~~~~~~vG~~~--e~~~~~l 114 (131)
T PRK01655 78 DLIKLISDNPGLLRRPIIIDEKRLQVGYNE--DEIRAFL 114 (131)
T ss_pred HHHHHHHhCcceEeCCEEEECCEEEecCCH--HHHHHHh
Confidence 444444443333446999999998888887 4444444
No 305
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=44.95 E-value=71 Score=26.18 Aligned_cols=14 Identities=7% Similarity=-0.228 Sum_probs=8.8
Q ss_pred CChhHHHHHHHHHH
Q 029558 102 QCGFSHTVVQILKS 115 (191)
Q Consensus 102 ~Cp~C~kak~iL~~ 115 (191)
|||.|.+-...|.+
T Consensus 43 ~~p~C~~el~~l~~ 56 (187)
T PRK10382 43 FTFVCPTELGDVAD 56 (187)
T ss_pred CCCcCHHHHHHHHH
Confidence 88888874444433
No 306
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=44.67 E-value=2.4e+02 Score=25.82 Aligned_cols=72 Identities=7% Similarity=0.167 Sum_probs=43.7
Q ss_pred hhcChHHHHHHHHhhcC----CcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCC---HHHHHHHHhhCCCCc
Q 029558 71 AALTPELKSTLDKVVTG----NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN---EMLRQGLKEYSSWPT 143 (191)
Q Consensus 71 ~~~~~~~~~~l~~~i~~----~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d---~~~r~~Lk~~sg~~t 143 (191)
.....++++.++++... .++.+..-+-.. ..--|=+.-.+..++.|+.++.+++.++ +++.+.+.++..-+.
T Consensus 66 ~~i~~~lk~~v~~l~~~~g~~P~LaiIlvGddp-aS~~Yv~~k~K~a~~~GI~~~~~~l~~~~te~ell~~I~~lN~D~~ 144 (345)
T PLN02897 66 EEIRTKIASEVRKMKKAVGKVPGLAVVLVGQQR-DSQTYVRNKIKACEETGIKSLLAELPEDCTEGQILSALRKFNEDTS 144 (345)
T ss_pred HHHHHHHHHHHHHHHhccCCCCeEEEEEeCCCh-HHHHHHHHHHHHHHhcCCEEEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 44455566666654332 345444443100 1234556667778888999999998764 567777887765554
No 307
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=44.60 E-value=8.5 Score=33.53 Aligned_cols=61 Identities=23% Similarity=0.452 Sum_probs=41.6
Q ss_pred hhcCCcEEEEEecCCCCCCChhHHHHHHHHHHc-------CCCceEeecCCCHHHHHHHHhhCCCCcccEEEE--CCEE
Q 029558 84 VVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNILENEMLRQGLKEYSSWPTFPQLYI--EGEF 153 (191)
Q Consensus 84 ~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~-------gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI--~G~~ 153 (191)
+++..=.+.|.. ||||-|......|+.. +|..-++||..++-+.-.+ -....|+||- ||++
T Consensus 37 ~l~gewmi~~~a-----p~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF----~vtaLptIYHvkDGeF 106 (248)
T KOG0913|consen 37 LLTGEWMIEFGA-----PWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRF----LVTALPTIYHVKDGEF 106 (248)
T ss_pred hhchHHHHHhcC-----CCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceee----EEEecceEEEeecccc
Confidence 333344455555 6999999999999765 6677888998887653322 2346799864 8864
No 308
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=44.60 E-value=1.4e+02 Score=25.16 Aligned_cols=66 Identities=20% Similarity=0.230 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCCCceEe--ecCCC------H-HHHHHH---HhhCCCCccc----------EEEECCEEEeechhhHHHH
Q 029558 107 HTVVQILKSLNAPFETV--NILEN------E-MLRQGL---KEYSSWPTFP----------QLYIEGEFFGGCDITVGKL 164 (191)
Q Consensus 107 ~kak~iL~~~gV~y~~v--dV~~d------~-~~r~~L---k~~sg~~tvP----------~IfI~G~~VGG~del~~~l 164 (191)
-+=+++|++.|++|+.+ |+|++ | +.-..| |.......+| ++.+||+.+|=..+..++.
T Consensus 12 PrR~elL~~~gi~f~~~~~~iDE~~~~~~~P~~~v~~LA~~KA~~va~~~~~~~~VigaDtvv~ldgrilgKP~~~~eA~ 91 (193)
T COG0424 12 PRRRELLEQLGIPFEVIPSDIDEPLLKAEEPREYVLRLAEEKARAVAARLPPDALVIGADTVVVLDGRILGKPKDEEEAR 91 (193)
T ss_pred HHHHHHHHHCCCCeEEecCCCCCCcccCCCHHHHHHHHHHHHHHHHHHhCCCCCEEEecCeEEEECCEEecCCCCHHHHH
Confidence 45678999999999876 55542 1 111111 1111223344 5566888888777766666
Q ss_pred HHHHhhcC
Q 029558 165 MDFLNLLN 172 (191)
Q Consensus 165 ke~L~~lg 172 (191)
+-+...-|
T Consensus 92 ~~L~~lSG 99 (193)
T COG0424 92 EMLRKLSG 99 (193)
T ss_pred HHHHHhcC
Confidence 55555544
No 309
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=44.48 E-value=1.3e+02 Score=28.57 Aligned_cols=72 Identities=15% Similarity=0.277 Sum_probs=49.7
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHHH
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLMD 166 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lke 166 (191)
+++++|.+.| +.-+.+.+.|.+.|.++..+|- |++..+.+++. .++.++ |+..+ .+
T Consensus 417 ~~hiiI~G~G-------~~G~~la~~L~~~g~~vvvId~--d~~~~~~~~~~----g~~~i~------GD~~~-----~~ 472 (558)
T PRK10669 417 CNHALLVGYG-------RVGSLLGEKLLAAGIPLVVIET--SRTRVDELRER----GIRAVL------GNAAN-----EE 472 (558)
T ss_pred CCCEEEECCC-------hHHHHHHHHHHHCCCCEEEEEC--CHHHHHHHHHC----CCeEEE------cCCCC-----HH
Confidence 5788888554 6678899999999999887775 45555656553 344433 33333 57
Q ss_pred HHhhcCcCCcceEEee
Q 029558 167 FLNLLNFSSTIWLVVC 182 (191)
Q Consensus 167 ~L~~lg~~~~~wl~~~ 182 (191)
.|++.|++.++.+.++
T Consensus 473 ~L~~a~i~~a~~viv~ 488 (558)
T PRK10669 473 IMQLAHLDCARWLLLT 488 (558)
T ss_pred HHHhcCccccCEEEEE
Confidence 7888888888877666
No 310
>PRK06490 glutamine amidotransferase; Provisional
Probab=44.19 E-value=25 Score=29.88 Aligned_cols=37 Identities=14% Similarity=0.140 Sum_probs=28.3
Q ss_pred cCCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCC
Q 029558 86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE 127 (191)
Q Consensus 86 ~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~ 127 (191)
...+|++.-.. .+.+=..+.++|++.|.+++.++...
T Consensus 6 ~~~~vlvi~h~-----~~~~~g~l~~~l~~~g~~~~v~~~~~ 42 (239)
T PRK06490 6 DKRPVLIVLHQ-----ERSTPGRVGQLLQERGYPLDIRRPRL 42 (239)
T ss_pred CCceEEEEecC-----CCCCChHHHHHHHHCCCceEEEeccC
Confidence 45566666554 67777889999999999998887653
No 311
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=43.68 E-value=45 Score=24.83 Aligned_cols=37 Identities=22% Similarity=0.172 Sum_probs=23.1
Q ss_pred HHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHHHHH
Q 029558 130 MLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLMDFL 168 (191)
Q Consensus 130 ~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lke~L 168 (191)
+..+.|.+.-.--.-|.|..+++.+-|+++ +.++++|
T Consensus 78 e~i~~l~~~p~LikRPii~~~~~~~vG~~~--e~~~~~l 114 (115)
T cd03032 78 ELIRLISEHPSLLRRPIIIDEKRLQIGYNE--DEIRQFL 114 (115)
T ss_pred HHHHHHHhChhheeCCEEEeCCEEEeCCCH--HHHHHhc
Confidence 344444433233345999999998889988 5555543
No 312
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=42.71 E-value=56 Score=30.90 Aligned_cols=64 Identities=17% Similarity=0.393 Sum_probs=44.1
Q ss_pred CChhHHHHHHHHHHcC--C-CceEeecCCCHHH-HHHHHhh---CCC--CcccEEEE-------CCEEEeechhhHHHHH
Q 029558 102 QCGFSHTVVQILKSLN--A-PFETVNILENEML-RQGLKEY---SSW--PTFPQLYI-------EGEFFGGCDITVGKLM 165 (191)
Q Consensus 102 ~Cp~C~kak~iL~~~g--V-~y~~vdV~~d~~~-r~~Lk~~---sg~--~tvP~IfI-------~G~~VGG~del~~~lk 165 (191)
.|||=.|+.=+-+++. . +|...-|...|+. .+.|+.. .|| ..=|.|+- .|..+||++|+.++.+
T Consensus 3 ~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e~~~ 82 (452)
T cd05295 3 DCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLEYAE 82 (452)
T ss_pred CCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHHHHHH
Confidence 7999988866656653 3 3777777765543 3344443 354 56799986 6789999999987743
No 313
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=42.53 E-value=50 Score=24.94 Aligned_cols=42 Identities=17% Similarity=0.288 Sum_probs=34.1
Q ss_pred HHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCc
Q 029558 78 KSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPF 120 (191)
Q Consensus 78 ~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y 120 (191)
+..+++. ....+.+++.|+...|+-+--..+.+.|+++|++.
T Consensus 20 ~~~~~~~-~~~~~~v~SAG~~~~~~~~~~~~a~~~l~~~gid~ 61 (138)
T PF01451_consen 20 RHLLKQR-LGDRFEVESAGTEAWPGEPVDPRAIAVLKEHGIDI 61 (138)
T ss_dssp HHHHHHT-HTTTEEEEEEESSSTTTSSSTHHHHHHHHHTTSSC
T ss_pred HHhcccc-ccCCcEEEEEeecccccccccchHHHHHHHhCCCc
Confidence 4444444 56799999999987778888899999999999874
No 314
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=41.11 E-value=1.1e+02 Score=24.25 Aligned_cols=53 Identities=9% Similarity=0.199 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCCCceEee--cCC---CHHHHHHHH--hhCCCCcccEEEECCEE-Eeechh
Q 029558 107 HTVVQILKSLNAPFETVN--ILE---NEMLRQGLK--EYSSWPTFPQLYIEGEF-FGGCDI 159 (191)
Q Consensus 107 ~kak~iL~~~gV~y~~vd--V~~---d~~~r~~Lk--~~sg~~tvP~IfI~G~~-VGG~de 159 (191)
..+.+++++.|++-+.+. +++ ...+++..+ ...|...+|.++|||+. +.|...
T Consensus 132 ~~l~~~a~~~Gld~~~~~~~~~~~~~~~~~~~~~~~a~~~gv~G~Pt~vv~g~~~~~G~~~ 192 (201)
T cd03024 132 DVLVDLAEEAGLDAAEARAVLASDEYADEVRADEARARQLGISGVPFFVFNGKYAVSGAQP 192 (201)
T ss_pred HHHHHHHHHcCCCHHHHHHHhcCcccchHHHHHHHHHHHCCCCcCCEEEECCeEeecCCCC
Confidence 457788888898754321 111 122222221 23488899999999874 567665
No 315
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=40.36 E-value=45 Score=22.84 Aligned_cols=18 Identities=11% Similarity=0.270 Sum_probs=13.7
Q ss_pred EEECCEEEeechhhHHHH
Q 029558 147 LYIEGEFFGGCDITVGKL 164 (191)
Q Consensus 147 IfI~G~~VGG~del~~~l 164 (191)
||+||..+|=.++-.++.
T Consensus 1 VFlNG~~iG~~~~p~~l~ 18 (63)
T PF04566_consen 1 VFLNGVWIGIHSDPEELV 18 (63)
T ss_dssp EEETTEEEEEESSHHHHH
T ss_pred CEECCEEEEEEcCHHHHH
Confidence 799999999877644443
No 316
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=39.82 E-value=1.4e+02 Score=26.72 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=20.2
Q ss_pred CChhHHHHHHHHHHcC-----CCceEeecCC
Q 029558 102 QCGFSHTVVQILKSLN-----APFETVNILE 127 (191)
Q Consensus 102 ~Cp~C~kak~iL~~~g-----V~y~~vdV~~ 127 (191)
+|+.|+|++-+|+.+. +.|.-+||..
T Consensus 84 GsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~ 114 (319)
T TIGR03439 84 GSGNLRKVGILLEALERQKKSVDYYALDVSR 114 (319)
T ss_pred CCCchHHHHHHHHHHHhcCCCceEEEEECCH
Confidence 7999999998888763 4577777754
No 317
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=39.31 E-value=65 Score=24.40 Aligned_cols=62 Identities=18% Similarity=0.224 Sum_probs=41.2
Q ss_pred HHHHHHHHHHcCCCceEeec--CCCHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHHHHH
Q 029558 106 SHTVVQILKSLNAPFETVNI--LENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLMDFL 168 (191)
Q Consensus 106 C~kak~iL~~~gV~y~~vdV--~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lke~L 168 (191)
-..+.++|++.|.+.....+ |+.+++++.+++......+ .|..+|.-+|..|-+.+.+.++.
T Consensus 20 ~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dl-iittGG~g~g~~D~t~~~l~~~~ 83 (135)
T smart00852 20 GPALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADL-VITTGGTGPGPDDVTPEAVAEAL 83 (135)
T ss_pred HHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCE-EEEcCCCCCCCCcCcHHHHHHHh
Confidence 35678889999987554443 3335677777766543332 45557777788888888877665
No 318
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=38.72 E-value=2.2e+02 Score=23.25 Aligned_cols=74 Identities=19% Similarity=0.234 Sum_probs=53.1
Q ss_pred hcChHHHHHHHHhhcCC---cEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEE
Q 029558 72 ALTPELKSTLDKVVTGN---KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLY 148 (191)
Q Consensus 72 ~~~~~~~~~l~~~i~~~---kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~If 148 (191)
+..+.+++..+++.+.+ .||+.+.+ ..+......+.+++.+...+-.. .+.++.|.+..+..++|.+.
T Consensus 50 ~FTP~Lk~fYe~l~~~~~~fEVvfVS~D-------~~~~~~~~y~~~~~~~W~~iPf~--d~~~~~l~~ky~v~~iP~l~ 120 (157)
T KOG2501|consen 50 DFTPILKDFYEELKDNAAPFEVVFVSSD-------RDEESLDEYMLEHHGDWLAIPFG--DDLIQKLSEKYEVKGIPALV 120 (157)
T ss_pred hCCchHHHHHHHHHhcCCceEEEEEecC-------CCHHHHHHHHHhcCCCeEEecCC--CHHHHHHHHhcccCcCceeE
Confidence 66778888888887773 46666554 55688888999988877666543 34667777777778888776
Q ss_pred E---CCEEE
Q 029558 149 I---EGEFF 154 (191)
Q Consensus 149 I---~G~~V 154 (191)
+ +|+.|
T Consensus 121 i~~~dG~~v 129 (157)
T KOG2501|consen 121 ILKPDGTVV 129 (157)
T ss_pred EecCCCCEe
Confidence 6 77544
No 319
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=38.36 E-value=79 Score=24.59 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=36.8
Q ss_pred HHHHHHhhCCCCcccEEEECCEEEeechhhHHHHHHHHhhcCcCCcceEEeeCC
Q 029558 131 LRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLMDFLNLLNFSSTIWLVVCDL 184 (191)
Q Consensus 131 ~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lke~L~~lg~~~~~wl~~~~~ 184 (191)
+.+.++.+. +.++.+.++|..=|+.+...+.+++.++.+.. .+.|..||+
T Consensus 17 l~~~~~~i~--~~~~i~~~gg~~d~~~gt~~~~i~~ai~~~~~--dGVlVltDL 66 (124)
T PRK14484 17 VKDLIKQMA--PDVPIIYAGGTEDGRIGTSFDQIQEAIEKNES--DGVLIFFDL 66 (124)
T ss_pred HHHHHHHhh--CCCCEEEecCCCCCCccchHHHHHHHHHhcCc--CCeEEEEeC
Confidence 334444444 67888888887667777888888888888754 788888887
No 320
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=38.00 E-value=88 Score=27.17 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=17.6
Q ss_pred CChhHHHHHHHHHHcCCCceEeecC
Q 029558 102 QCGFSHTVVQILKSLNAPFETVNIL 126 (191)
Q Consensus 102 ~Cp~C~kak~iL~~~gV~y~~vdV~ 126 (191)
++..-..+..+|++.|++.+.+.+.
T Consensus 13 G~n~d~e~~~Al~~aG~~v~~v~~~ 37 (261)
T PRK01175 13 GTNCEDETVKAFRRLGVEPEYVHIN 37 (261)
T ss_pred CCCCHHHHHHHHHHCCCcEEEEeec
Confidence 4433357789999999887776653
No 321
>PRK13190 putative peroxiredoxin; Provisional
Probab=38.00 E-value=82 Score=25.85 Aligned_cols=26 Identities=8% Similarity=0.004 Sum_probs=14.8
Q ss_pred CChhHHHHHHHHHH-------cCCCceEeecCC
Q 029558 102 QCGFSHTVVQILKS-------LNAPFETVNILE 127 (191)
Q Consensus 102 ~Cp~C~kak~iL~~-------~gV~y~~vdV~~ 127 (191)
+||.|..-...|.+ .|+..--+.++.
T Consensus 39 ~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~ 71 (202)
T PRK13190 39 FTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDS 71 (202)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 89999865544443 355444444443
No 322
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=37.79 E-value=1.4e+02 Score=26.05 Aligned_cols=42 Identities=5% Similarity=-0.132 Sum_probs=22.9
Q ss_pred HHhhcCCcEEEEEe-cCCCCCCChhHHHHHHHH-------HHcCCCceEeecCC
Q 029558 82 DKVVTGNKVVLFMK-GTKDFPQCGFSHTVVQIL-------KSLNAPFETVNILE 127 (191)
Q Consensus 82 ~~~i~~~kVVIYsk-~~~~~p~Cp~C~kak~iL-------~~~gV~y~~vdV~~ 127 (191)
.+..+.+.+++|.. + .|||.|.+-...| ++.|++.--+.++.
T Consensus 93 sd~~kgk~vVL~FyPa----~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds 142 (261)
T PTZ00137 93 SDYFKDSYGLLVFYPL----DFTFVCPSELLGFSERLKEFEERGVKVLGVSVDS 142 (261)
T ss_pred HHHcCCCeEEEEEECC----CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 34434555666643 2 3899998744433 44455554455444
No 323
>PRK14364 Maf-like protein; Provisional
Probab=37.48 E-value=2.3e+02 Score=23.20 Aligned_cols=74 Identities=18% Similarity=0.228 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCCceEe--ecCCC------H-HHHHH--------H-HhhC-----CCCcccEEEECCEEEeechhhHHH
Q 029558 107 HTVVQILKSLNAPFETV--NILEN------E-MLRQG--------L-KEYS-----SWPTFPQLYIEGEFFGGCDITVGK 163 (191)
Q Consensus 107 ~kak~iL~~~gV~y~~v--dV~~d------~-~~r~~--------L-k~~s-----g~~tvP~IfI~G~~VGG~del~~~ 163 (191)
.+=+++|+++|++|+.+ |++++ + ++-.. + +++. +..| +|..||+.+|=..+..++
T Consensus 6 prR~elL~~~g~~f~v~~~~~dE~~~~~~~p~~~~~~lA~~KA~~v~~~~~~~~vI~aDT--vV~~~g~ilgKP~~~eeA 83 (181)
T PRK14364 6 PRRRELLQQLGLNFEIYSPDIDESVHEGELVHQYVERLAREKAQAVLNIFPDSVIIAADT--SLGLDGQIIGKPDSKQHA 83 (181)
T ss_pred HHHHHHHHHCCCCeEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCEEEEeCe--EEEECCEEecCCCCHHHH
Confidence 34568899999998765 44442 2 11111 1 1110 1222 356788888876665566
Q ss_pred HHHHHhhcCcCCcceEEee
Q 029558 164 LMDFLNLLNFSSTIWLVVC 182 (191)
Q Consensus 164 lke~L~~lg~~~~~wl~~~ 182 (191)
.+-+...-|-.-..+-+||
T Consensus 84 ~~~L~~lsG~~h~V~Tgv~ 102 (181)
T PRK14364 84 FDIWKQLSGRWHDVFSGIC 102 (181)
T ss_pred HHHHHHhCCCCeEEEEEEE
Confidence 5544444454445566666
No 324
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=37.02 E-value=1e+02 Score=25.19 Aligned_cols=71 Identities=17% Similarity=0.248 Sum_probs=35.5
Q ss_pred CcEEEEEecCCCCCCChhHHHHHHHHHHc-------CCCceEeecC--------CCHHHHHHHHhhCCCCcccEE---EE
Q 029558 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL-------NAPFETVNIL--------ENEMLRQGLKEYSSWPTFPQL---YI 149 (191)
Q Consensus 88 ~kVVIYsk~~~~~p~Cp~C~kak~iL~~~-------gV~y~~vdV~--------~d~~~r~~Lk~~sg~~tvP~I---fI 149 (191)
.-+++|..+ ||++|.. ...|+++ |+..--+..+ .+.++++.++...| .++|.+ -+
T Consensus 27 vvLVvf~AS-----~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g-~~Fpv~~k~dv 99 (183)
T PRK10606 27 VLLIVNVAS-----KCGLTPQ-YEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWG-VTFPMFSKIEV 99 (183)
T ss_pred EEEEEEEeC-----CCCCcHH-HHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccC-CCceeEEEEcc
Confidence 345666664 9999964 3344443 3333233222 22455555542223 367755 35
Q ss_pred CCEEEeechhhHHHHHHHH
Q 029558 150 EGEFFGGCDITVGKLMDFL 168 (191)
Q Consensus 150 ~G~~VGG~del~~~lke~L 168 (191)
+|+ +...+.+++++..
T Consensus 100 nG~---~~~pl~~~Lk~~~ 115 (183)
T PRK10606 100 NGE---GRHPLYQKLIAAA 115 (183)
T ss_pred CCC---CCCHHHHHHHHhC
Confidence 663 3445666665433
No 325
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=36.67 E-value=1.3e+02 Score=24.34 Aligned_cols=26 Identities=12% Similarity=-0.010 Sum_probs=13.5
Q ss_pred CChhHHHHHHHH-------HHcCCCceEeecCC
Q 029558 102 QCGFSHTVVQIL-------KSLNAPFETVNILE 127 (191)
Q Consensus 102 ~Cp~C~kak~iL-------~~~gV~y~~vdV~~ 127 (191)
+|+.|......| .+.|+..--+.++.
T Consensus 48 ~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~ 80 (199)
T PTZ00253 48 FTFVCPTEIIQFSDSVKRFNELNCEVLACSMDS 80 (199)
T ss_pred CCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCC
Confidence 566666533333 34466655555543
No 326
>PRK12559 transcriptional regulator Spx; Provisional
Probab=36.59 E-value=80 Score=24.39 Aligned_cols=83 Identities=16% Similarity=0.086 Sum_probs=43.0
Q ss_pred HHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHc-----------CCCceEeecCC----CHHHHHHHHhhCCCC
Q 029558 78 KSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL-----------NAPFETVNILE----NEMLRQGLKEYSSWP 142 (191)
Q Consensus 78 ~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~-----------gV~y~~vdV~~----d~~~r~~Lk~~sg~~ 142 (191)
...+++.--+...+-|.+. =+.-.++.++|... +-.|...+++. ..+..+.|.+.-.--
T Consensus 17 ~~~L~~~gi~~~~~di~~~------~~s~~el~~~l~~~~~g~~~lin~~~~~~k~l~~~~~~ls~~e~i~ll~~~P~Li 90 (131)
T PRK12559 17 KAWLEENQIDYTEKNIVSN------SMTVDELKSILRLTEEGATEIISTRSKTFQDLNINIEELSLNEFYKLIIEHPLML 90 (131)
T ss_pred HHHHHHcCCCeEEEEeeCC------cCCHHHHHHHHHHcCCCHHHHHhcCcHHHHhCCCCcccCCHHHHHHHHHhCcceE
Confidence 3444444344455555553 23335555566553 33344444432 133444444332333
Q ss_pred cccEEEECCEEEeechhhHHHHHHHH
Q 029558 143 TFPQLYIEGEFFGGCDITVGKLMDFL 168 (191)
Q Consensus 143 tvP~IfI~G~~VGG~del~~~lke~L 168 (191)
.-|.|..+|+.+-|+++ +.++++|
T Consensus 91 kRPIi~~~~~~~iGf~~--e~~~~~l 114 (131)
T PRK12559 91 RRPIMLDEKRLQIGFND--EEIRKFL 114 (131)
T ss_pred eCCEEEeCCEEEEcCCH--HHHHHHh
Confidence 45999999998889987 4444444
No 327
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen
Probab=36.58 E-value=45 Score=23.15 Aligned_cols=26 Identities=8% Similarity=0.093 Sum_probs=20.6
Q ss_pred CcccEEEECCEEEeechhhHHHHHHHHh
Q 029558 142 PTFPQLYIEGEFFGGCDITVGKLMDFLN 169 (191)
Q Consensus 142 ~tvP~IfI~G~~VGG~del~~~lke~L~ 169 (191)
..=|.+.|||+.++..+. +.++++++
T Consensus 45 ~~gP~v~V~~~~~~~~t~--~~i~~~~~ 70 (72)
T cd03082 45 ERAPAALVGQRPVDGATP--AAVAAAVE 70 (72)
T ss_pred CCCCeEEECCEEeCCcCH--HHHHHHHh
Confidence 456999999999998877 66666665
No 328
>COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]
Probab=36.51 E-value=31 Score=28.17 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=25.0
Q ss_pred CCcccEEEECCEEEeechhhHHHHHHHHhhcC
Q 029558 141 WPTFPQLYIEGEFFGGCDITVGKLMDFLNLLN 172 (191)
Q Consensus 141 ~~tvP~IfI~G~~VGG~del~~~lke~L~~lg 172 (191)
...=|.+.|||+.+|+.++ +.+.++|+++.
T Consensus 128 C~~AP~vmind~~~~~lt~--e~l~eil~~~~ 157 (160)
T COG1905 128 CGQAPVVMINDDVYGRLTP--EKLEEILEKLK 157 (160)
T ss_pred cccCCEEEECCchhccCCH--HHHHHHHHHHh
Confidence 4556999999999999887 88888888754
No 329
>PF08616 SPA: Stabilization of polarity axis
Probab=36.36 E-value=1.9e+02 Score=21.88 Aligned_cols=42 Identities=24% Similarity=0.422 Sum_probs=27.7
Q ss_pred hhcChHHHHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHc
Q 029558 71 AALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSL 116 (191)
Q Consensus 71 ~~~~~~~~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~ 116 (191)
....+++....+.++...+|++|+.+ |.-..|-+++-.|-.+
T Consensus 9 ~~f~~~i~~L~~alL~~krivv~s~~----~~~~~~s~~Vlal~~L 50 (113)
T PF08616_consen 9 QQFGPEIILLWEALLLGKRIVVYSPS----PSAGEVSEFVLALCSL 50 (113)
T ss_pred HhhhhHHHHHHHHHHhCCCEEEECCC----CCHHHHHHHHHHHHHH
Confidence 35567777778999999999999874 2222255554444443
No 330
>PRK15000 peroxidase; Provisional
Probab=35.86 E-value=1.6e+02 Score=24.26 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=13.5
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHH
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKS 115 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~ 115 (191)
.+.+++|...+ .+||.|.+-...|.+
T Consensus 34 gk~vvL~F~p~---~~t~vC~~El~~l~~ 59 (200)
T PRK15000 34 GKTTVLFFWPM---DFTFVCPSELIAFDK 59 (200)
T ss_pred CCEEEEEEECC---CCCCCCHHHHHHHHH
Confidence 44555555510 157788765444443
No 331
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=35.78 E-value=55 Score=21.73 Aligned_cols=45 Identities=9% Similarity=-0.064 Sum_probs=23.1
Q ss_pred CChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECC
Q 029558 102 QCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEG 151 (191)
Q Consensus 102 ~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G 151 (191)
.=-....++.+|++.||++...|-....- .-..|....+.|+|..
T Consensus 8 ~~~ea~~i~~~L~~~gI~~~v~~~~~~~~-----~g~~g~~~~~~v~V~~ 52 (67)
T PF09413_consen 8 DPIEAELIKGLLEENGIPAFVKNEHMSGY-----AGEPGTGGQVEVYVPE 52 (67)
T ss_dssp -HHHHHHHHHHHHHTT--EE--S----SS--------S--SSSEEEEEEG
T ss_pred CHHHHHHHHHHHHhCCCcEEEECCccchh-----hcccCccCceEEEECH
Confidence 44457899999999999988776532211 1113555558888866
No 332
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=35.55 E-value=91 Score=27.33 Aligned_cols=58 Identities=17% Similarity=0.300 Sum_probs=37.5
Q ss_pred HHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCC-----CcccEEEECCEEEeechhhHHHHH--HHHhhcCc
Q 029558 108 TVVQILKSLNAPFETVNILENEMLRQGLKEYSSW-----PTFPQLYIEGEFFGGCDITVGKLM--DFLNLLNF 173 (191)
Q Consensus 108 kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~-----~tvP~IfI~G~~VGG~del~~~lk--e~L~~lg~ 173 (191)
.++.+|++.|- +..+.+++|+.++.. ..|=+|-++|..+...+.+.+... .+|..+|+
T Consensus 4 ~~~~~~~~~~~--------~~~e~~~~l~~f~~~~~~~~~~f~VIK~GG~~~~~~~~~~~l~~dla~L~~lGl 68 (271)
T cd04236 4 DVKAFLHQKGG--------DPREARYWLTQFQIAMPNDWPAFAVLEVDHSVFRSLEMVQSLSFGLAFLQRMDM 68 (271)
T ss_pred hHHHHHHHhCC--------CHHHHHHHHHHhhccCCCCCCCEEEEEEChhhhcCchhHHHHHHHHHHHHHCCC
Confidence 45667776652 336788888888763 567777778887764444444443 56666664
No 333
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=35.41 E-value=1.7e+02 Score=23.30 Aligned_cols=40 Identities=10% Similarity=0.116 Sum_probs=22.9
Q ss_pred hcChHHHHHHHHhhcCC-cEEEEEecCCCCCCChhHHHHHHHHHHcCCC
Q 029558 72 ALTPELKSTLDKVVTGN-KVVLFMKGTKDFPQCGFSHTVVQILKSLNAP 119 (191)
Q Consensus 72 ~~~~~~~~~l~~~i~~~-kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~ 119 (191)
.+-+.+.+.++.+.+.+ ++.|.+.+ .-..+...|+..|+.
T Consensus 75 ~~~~g~~~~L~~L~~~g~~~~i~Sn~--------~~~~~~~~l~~~~l~ 115 (205)
T TIGR01454 75 EVFPGVPELLAELRADGVGTAIATGK--------SGPRARSLLEALGLL 115 (205)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEeCC--------chHHHHHHHHHcCCh
Confidence 34456667777665543 56666552 123455667777773
No 334
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=34.88 E-value=1.2e+02 Score=25.08 Aligned_cols=63 Identities=14% Similarity=0.116 Sum_probs=44.4
Q ss_pred HHHHHHHHHcCCCceEeec--CCCHHHHHHHHhhCCCCcccEEEE-CCEEEeechhhHHHHHHHHhh
Q 029558 107 HTVVQILKSLNAPFETVNI--LENEMLRQGLKEYSSWPTFPQLYI-EGEFFGGCDITVGKLMDFLNL 170 (191)
Q Consensus 107 ~kak~iL~~~gV~y~~vdV--~~d~~~r~~Lk~~sg~~tvP~IfI-~G~~VGG~del~~~lke~L~~ 170 (191)
.-+.++|++.|.....+.| |+...++..+.++.+.. +=.|+. +|.=++.-|.+.++.+.++++
T Consensus 30 ~~l~~~L~~ag~~~~~~~iV~D~~~~I~~~l~~~~~~~-~DvvlttGGTG~t~RDvTpEA~~~~~dK 95 (169)
T COG0521 30 PLLVELLEEAGHNVAAYTIVPDDKEQIRATLIALIDED-VDVVLTTGGTGITPRDVTPEATRPLFDK 95 (169)
T ss_pred hHHHHHHHHcCCccceEEEeCCCHHHHHHHHHHHhcCC-CCEEEEcCCccCCCCcCCHHHHHHHHhc
Confidence 5567889998887644444 34467888888887776 655544 678888888888887766654
No 335
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=34.33 E-value=1.6e+02 Score=23.41 Aligned_cols=29 Identities=28% Similarity=0.246 Sum_probs=25.1
Q ss_pred CChhHHHHHHHHHHcCCCceEeecCCCHH
Q 029558 102 QCGFSHTVVQILKSLNAPFETVNILENEM 130 (191)
Q Consensus 102 ~Cp~C~kak~iL~~~gV~y~~vdV~~d~~ 130 (191)
++.|.....++|++.|++.+.+..++.++
T Consensus 7 ~~~~~~~~~~~l~~~G~~~~~~~~~~~~~ 35 (184)
T cd01743 7 YDSFTYNLVQYLRELGAEVVVVRNDEITL 35 (184)
T ss_pred CCccHHHHHHHHHHcCCceEEEeCCCCCH
Confidence 78899999999999999999888876544
No 336
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=34.21 E-value=1.1e+02 Score=22.08 Aligned_cols=27 Identities=15% Similarity=0.057 Sum_probs=19.9
Q ss_pred HHHHhhCCCCcccEEEECCEEEeechh
Q 029558 133 QGLKEYSSWPTFPQLYIEGEFFGGCDI 159 (191)
Q Consensus 133 ~~Lk~~sg~~tvP~IfI~G~~VGG~de 159 (191)
+.+++......+|...|+.+..|-.|-
T Consensus 61 ~~i~~~~~~~~~pv~~I~~~~Y~~~dg 87 (96)
T cd05564 61 DEVKKKAAEYGIPVAVIDMMDYGMMNG 87 (96)
T ss_pred HHHHHHhccCCCcEEEcChHhcccCCH
Confidence 344544567789999999988886655
No 337
>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes. It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu
Probab=34.00 E-value=58 Score=22.49 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=20.8
Q ss_pred CcccEEEECCEEEeechhhHHHHHHHHhh
Q 029558 142 PTFPQLYIEGEFFGGCDITVGKLMDFLNL 170 (191)
Q Consensus 142 ~tvP~IfI~G~~VGG~del~~~lke~L~~ 170 (191)
..=|.+.|+|..+++.+. +.+.+++++
T Consensus 53 ~~gP~v~v~g~~y~~vt~--~~i~~i~~~ 79 (80)
T cd03064 53 DLAPVMMINDDVYGRLTP--EKVDAILEA 79 (80)
T ss_pred CCCCEEEECCEEECCCCH--HHHHHHHHh
Confidence 345999999999988877 666677665
No 338
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=33.89 E-value=2.2e+02 Score=23.76 Aligned_cols=58 Identities=16% Similarity=0.276 Sum_probs=36.4
Q ss_pred HHHHHHHHcCCCceEeecCCC-HHHHHHHHhhCCCCcccEEEE--CC------EEE-eechhhHHHHHHHHh
Q 029558 108 TVVQILKSLNAPFETVNILEN-EMLRQGLKEYSSWPTFPQLYI--EG------EFF-GGCDITVGKLMDFLN 169 (191)
Q Consensus 108 kak~iL~~~gV~y~~vdV~~d-~~~r~~Lk~~sg~~tvP~IfI--~G------~~V-GG~del~~~lke~L~ 169 (191)
-+|++++++||+--...+..+ ++.++.+++. ..|.++| || ..| ...++..+.+++++.
T Consensus 5 faK~fm~~~~IPTa~~~~f~~~~~A~~~l~~~----~~p~~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~ 72 (194)
T PF01071_consen 5 FAKEFMKRYGIPTAKYKVFTDYEEALEYLEEQ----GYPYVVIKADGLAAGKGVVIADDREEALEALREIFV 72 (194)
T ss_dssp HHHHHHHHTT-SB--EEEESSHHHHHHHHHHH----SSSEEEEEESSSCTTTSEEEESSHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCCeeEECCHHHHHHHHHhc----CCCceEEccCCCCCCCEEEEeCCHHHHHHHHHHhcc
Confidence 478999999998554444444 5677778776 5555444 33 344 456677777888886
No 339
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=33.80 E-value=45 Score=26.06 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=20.1
Q ss_pred cEEEEEecCCCCCCChhHHHHHHHH----HHc-CCCceEeec
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVVQIL----KSL-NAPFETVNI 125 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak~iL----~~~-gV~y~~vdV 125 (191)
+|++|.. +.||||-.+...| +++ +++++.+-+
T Consensus 1 ~i~~~~D-----~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~ 37 (193)
T PF01323_consen 1 TIEFFFD-----FICPWCYLASPRLRKLRAEYPDVEIEWRPF 37 (193)
T ss_dssp EEEEEEB-----TTBHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CEEEEEe-----CCCHHHHHHHHHHHHHHHHhcCCcEEEecc
Confidence 4667776 6999997665544 444 666554433
No 340
>COG3917 NahD 2-hydroxychromene-2-carboxylate isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.75 E-value=1.1e+02 Score=25.99 Aligned_cols=41 Identities=15% Similarity=0.201 Sum_probs=30.0
Q ss_pred CCHHHHHHHHhhC------CCCcccEEEECCEEEeechhhHHHHHHH
Q 029558 127 ENEMLRQGLKEYS------SWPTFPQLYIEGEFFGGCDITVGKLMDF 167 (191)
Q Consensus 127 ~d~~~r~~Lk~~s------g~~tvP~IfI~G~~VGG~del~~~lke~ 167 (191)
.++++++.++.-+ |--..|.++++++..=|.|.+-....++
T Consensus 154 gd~eik~~l~a~~~~a~srGvfGaPtfivg~q~fwGqDRL~~lea~L 200 (203)
T COG3917 154 GDDEIKARLKANTAEAVSRGVFGAPTFIVGDQLFWGQDRLYQLEAEL 200 (203)
T ss_pred CCHHHHHHHHhhHHHHHhcCccCCCeEEECCeeeechhHHHHHHHHH
Confidence 4678888877543 5566789999999999998875554443
No 341
>PRK04425 Maf-like protein; Reviewed
Probab=33.33 E-value=2.8e+02 Score=23.02 Aligned_cols=84 Identities=11% Similarity=0.040 Sum_probs=45.6
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEe--ecCCC------H-HHHHH--------HHhhC------CCCc
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETV--NILEN------E-MLRQG--------LKEYS------SWPT 143 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~v--dV~~d------~-~~r~~--------Lk~~s------g~~t 143 (191)
+.++++=+.+ .+=+++|+++|++|+.+ |++++ + +.-.. +.+.. +..|
T Consensus 4 ~~~iILAS~S----------prR~elL~~~g~~f~v~~~~iDE~~~~~~~p~~~~~~lA~~KA~~v~~~~~~~lvI~aDT 73 (196)
T PRK04425 4 ELPLVLGTSS----------VFRREQMERLGIAFQAASPDFDETPMLGESAPQTALRLAEGKARSLTGRFPEALIVGADQ 73 (196)
T ss_pred CCcEEEeCCC----------HHHHHHHHHCCCCeEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCCCCEEEEeCe
Confidence 3456666554 56678999999999865 44441 1 11010 11110 1122
Q ss_pred ccEEEECCEEEeechhhHHHHHHHHhhcCcCCcceEEee
Q 029558 144 FPQLYIEGEFFGGCDITVGKLMDFLNLLNFSSTIWLVVC 182 (191)
Q Consensus 144 vP~IfI~G~~VGG~del~~~lke~L~~lg~~~~~wl~~~ 182 (191)
+|+.+|+.+|=..+..++.+-+...-|-.-..|-+||
T Consensus 74 --vV~~~g~ilgKP~~~eeA~~~L~~lsg~~h~v~T~v~ 110 (196)
T PRK04425 74 --VAWCDGRQWGKPMNLANAQKMLMHLSGREIEFYSALV 110 (196)
T ss_pred --EEEECCEEecCCCCHHHHHHHHHHhCCCcEEEEEEEE
Confidence 3567888888666655555544444454445555555
No 342
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=33.08 E-value=2.2e+02 Score=21.58 Aligned_cols=26 Identities=15% Similarity=0.287 Sum_probs=15.3
Q ss_pred ccEEEECCEEEeechhhHHHHHHHHh
Q 029558 144 FPQLYIEGEFFGGCDITVGKLMDFLN 169 (191)
Q Consensus 144 vP~IfI~G~~VGG~del~~~lke~L~ 169 (191)
.|.+++....=.|.+++.+.+.+.+.
T Consensus 71 ~~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 71 IPVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred CcEEEEEccccccHHHHHHHHHHHHh
Confidence 46666655444566666666665554
No 343
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=32.59 E-value=73 Score=24.21 Aligned_cols=70 Identities=20% Similarity=0.315 Sum_probs=45.3
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCce----EeecCCCHHHHHHHHhhCCCCcccEEEE--CCEEEeechhh
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFE----TVNILENEMLRQGLKEYSSWPTFPQLYI--EGEFFGGCDIT 160 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~----~vdV~~d~~~r~~Lk~~sg~~tvP~IfI--~G~~VGG~del 160 (191)
....++|..+-|. .+|.+..+--+|-|+--.|. .--+ .++...+|...+|...+|.+.+ +|+++|-..-+
T Consensus 26 ~~~~vlf~~gDp~--r~~E~~DvaVILPEL~~af~~~~~~avv--~~~~e~~L~~r~gv~~~PaLvf~R~g~~lG~i~gi 101 (107)
T PF07449_consen 26 PGDAVLFFAGDPA--RFPETADVAVILPELVKAFPGRFRGAVV--ARAAERALAARFGVRRWPALVFFRDGRYLGAIEGI 101 (107)
T ss_dssp CSCEEEEESS-TT--TSTTCCHHHHHHHHHHCTSTTSEEEEEE--EHHHHHHHHHHHT-TSSSEEEEEETTEEEEEEESS
T ss_pred CCcEEEEECCCCC--cCcccccceeEcHHHHHhhhCccceEEE--CchhHHHHHHHhCCccCCeEEEEECCEEEEEecCe
Confidence 4456666666443 56777777777777644332 2122 2677788998889999998755 99999875543
No 344
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=32.56 E-value=1.3e+02 Score=23.21 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=31.5
Q ss_pred HHHHHhhCCCCcccEEEECCEEEeechhhHHHHHHHHhhcCcCCcceEEeeCC
Q 029558 132 RQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLMDFLNLLNFSSTIWLVVCDL 184 (191)
Q Consensus 132 r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lke~L~~lg~~~~~wl~~~~~ 184 (191)
++.++.+.|. .++...++|..=|+.....+++++.++++.......+..||+
T Consensus 17 ~~~~~~~~g~-~~~i~~~gg~~d~~~gt~~~~I~~ai~~~~~~~dgVlvl~DL 68 (125)
T TIGR02364 17 KELIKQMAGD-DVTIISAGGTDDGRLGTSPDKIIEAIEKADNEADGVLIFYDL 68 (125)
T ss_pred HHHHHHHcCC-CccEEEEecCCCCCccchHHHHHHHHHHhcCCCCCEEEEEcC
Confidence 3334444443 566666666655666666666776676665445667777776
No 345
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=32.51 E-value=2.4e+02 Score=21.97 Aligned_cols=89 Identities=18% Similarity=0.162 Sum_probs=54.5
Q ss_pred HHHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCC------CHHHHHHHHhhCCCCcccEEEEC
Q 029558 77 LKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE------NEMLRQGLKEYSSWPTFPQLYIE 150 (191)
Q Consensus 77 ~~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~------d~~~r~~Lk~~sg~~tvP~IfI~ 150 (191)
-+..+..++..+-.-++-.+ -+-..+++.+.-.+.+.+..-+.... -+++.+.|++. |.+. +.|+++
T Consensus 15 Gkniv~~~L~~~GfeVidLG-----~~v~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~-gl~~-v~vivG 87 (128)
T cd02072 15 GNKILDHAFTEAGFNVVNLG-----VLSPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEA-GLKD-ILLYVG 87 (128)
T ss_pred HHHHHHHHHHHCCCEEEECC-----CCCCHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHC-CCCC-CeEEEE
Confidence 35566666667766555554 56666777777777787765543321 24555666654 5545 668888
Q ss_pred CEE-EeechhhHHHHHHHHhhcCcC
Q 029558 151 GEF-FGGCDITVGKLMDFLNLLNFS 174 (191)
Q Consensus 151 G~~-VGG~del~~~lke~L~~lg~~ 174 (191)
|.. +++-|. +..++.|+++|++
T Consensus 88 G~~~i~~~d~--~~~~~~L~~~Gv~ 110 (128)
T cd02072 88 GNLVVGKQDF--EDVEKRFKEMGFD 110 (128)
T ss_pred CCCCCChhhh--HHHHHHHHHcCCC
Confidence 865 455444 4456778888864
No 346
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=32.19 E-value=57 Score=24.26 Aligned_cols=36 Identities=8% Similarity=0.140 Sum_probs=30.4
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecC
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNIL 126 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~ 126 (191)
..+++|.+.| +....|.++.+.|++.|++...+|+.
T Consensus 9 g~di~iia~G----~~~~~al~A~~~L~~~Gi~~~vi~~~ 44 (124)
T PF02780_consen 9 GADITIIAYG----SMVEEALEAAEELEEEGIKAGVIDLR 44 (124)
T ss_dssp SSSEEEEEET----THHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCCEEEEeeh----HHHHHHHHHHHHHHHcCCceeEEeeE
Confidence 4678888887 57888999999999999998888763
No 347
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=31.65 E-value=1.9e+02 Score=24.74 Aligned_cols=90 Identities=14% Similarity=0.157 Sum_probs=51.1
Q ss_pred HHHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHcCCC----ceEeecCCCHHHHHHHHhhCCCCcccEEEECCE
Q 029558 77 LKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAP----FETVNILENEMLRQGLKEYSSWPTFPQLYIEGE 152 (191)
Q Consensus 77 ~~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~----y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~ 152 (191)
....+++.++...+++|.-+.++ |.-..+..+.+++. +.+ +...|+....+..+.+..+ .....+.+++...
T Consensus 11 ~~~~~~~~l~~aDvVl~V~Dar~-p~~~~~~~i~~~l~--~kp~IiVlNK~DL~~~~~~~~~~~~~-~~~~~~vi~iSa~ 86 (276)
T TIGR03596 11 ARREIKEKLKLVDVVIEVLDARI-PLSSRNPMIDEIRG--NKPRLIVLNKADLADPAVTKQWLKYF-EEKGIKALAINAK 86 (276)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCC-CCCCCChhHHHHHC--CCCEEEEEEccccCCHHHHHHHHHHH-HHcCCeEEEEECC
Confidence 34567788888899999887543 33334455555553 334 2334553222233322222 1123577888765
Q ss_pred EEeechhhHHHHHHHHhh
Q 029558 153 FFGGCDITVGKLMDFLNL 170 (191)
Q Consensus 153 ~VGG~del~~~lke~L~~ 170 (191)
.=.|.+++.+.+.+++..
T Consensus 87 ~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 87 KGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred CcccHHHHHHHHHHHHHH
Confidence 556788888877766643
No 348
>PRK10537 voltage-gated potassium channel; Provisional
Probab=31.64 E-value=1.3e+02 Score=27.62 Aligned_cols=70 Identities=9% Similarity=0.008 Sum_probs=45.9
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHHH
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLMD 166 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lke 166 (191)
.+.++|.+.+ +..+.+.+.|.+.|.++..+|-+ ...+... ..++. ..|...+ ++
T Consensus 240 k~HvII~G~g-------~lg~~v~~~L~~~g~~vvVId~d---~~~~~~~-----~g~~v------I~GD~td-----~e 293 (393)
T PRK10537 240 KDHFIICGHS-------PLAINTYLGLRQRGQAVTVIVPL---GLEHRLP-----DDADL------IPGDSSD-----SA 293 (393)
T ss_pred CCeEEEECCC-------hHHHHHHHHHHHCCCCEEEEECc---hhhhhcc-----CCCcE------EEeCCCC-----HH
Confidence 5678888553 66788888899999998888743 1111111 12332 2344444 68
Q ss_pred HHhhcCcCCcceEEee
Q 029558 167 FLNLLNFSSTIWLVVC 182 (191)
Q Consensus 167 ~L~~lg~~~~~wl~~~ 182 (191)
.|++.|+..+..+.++
T Consensus 294 ~L~~AgI~~A~aVI~~ 309 (393)
T PRK10537 294 VLKKAGAARARAILAL 309 (393)
T ss_pred HHHhcCcccCCEEEEc
Confidence 8999999888888776
No 349
>PF01257 2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredoxin; InterPro: IPR002023 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 24 kDa (in mammals), which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 2Fe-2S iron-sulphur cluster. The 24 kDa subunit is nuclear encoded, as a precursor form with a transit peptide in mammals and in Neurospora crassa. There is a highly conserved region located in the central section of this subunit that contains two conserved cysteines, that are probably involved in the binding of the 2Fe-2S centre. The 24 kDa subunit is highly similar to [, ]: Subunit E of Escherichia coli NADH-ubiquinone oxidoreductase (gene nuoE) Subunit NQO2 of Paracoccus denitrificans NADH-ubiquinone oxidoreductase ; GO: 0016491 oxidoreductase activity, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 1M2D_A 1M2A_B 1F37_B 1M2B_B 2FUG_B 3M9S_B 3IAM_B 3IAS_K 2YBB_2 3I9V_B ....
Probab=31.64 E-value=35 Score=26.77 Aligned_cols=28 Identities=25% Similarity=0.534 Sum_probs=22.3
Q ss_pred CcccEEEECCEEEeechhhHHHHHHHHhhc
Q 029558 142 PTFPQLYIEGEFFGGCDITVGKLMDFLNLL 171 (191)
Q Consensus 142 ~tvP~IfI~G~~VGG~del~~~lke~L~~l 171 (191)
..=|.+.|||+.++..+. +.+.++++++
T Consensus 117 ~~aP~v~V~~~~y~~vt~--e~v~~il~~l 144 (145)
T PF01257_consen 117 DQAPVVMVDGEWYGNVTP--EKVDEILEEL 144 (145)
T ss_dssp GGSSEEEECCCEEESSSC--CHHHHHHHHH
T ss_pred CCCCEEEECCEEECCCCH--HHHHHHHHhc
Confidence 345999999999999887 6667777664
No 350
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=31.62 E-value=1.1e+02 Score=23.67 Aligned_cols=41 Identities=5% Similarity=0.317 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHcCCCceEeecCCC--HHHHHHHHhhCCCCcccEEEECC
Q 029558 105 FSHTVVQILKSLNAPFETVNILEN--EMLRQGLKEYSSWPTFPQLYIEG 151 (191)
Q Consensus 105 ~C~kak~iL~~~gV~y~~vdV~~d--~~~r~~Lk~~sg~~tvP~IfI~G 151 (191)
|-+++++.|+++|+..+.+++.+. ++..+.+. +.-.||+.|
T Consensus 1 y~~~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~------~ad~I~~~G 43 (154)
T PF03575_consen 1 YVEKFRKAFRKLGFEVDQLDLSDRNDADILEAIR------EADAIFLGG 43 (154)
T ss_dssp HHHHHHHHHHHCT-EEEECCCTSCGHHHHHHHHH------HSSEEEE--
T ss_pred CHHHHHHHHHHCCCEEEEEeccCCChHHHHHHHH------hCCEEEECC
Confidence 347889999999999888888763 34444444 334667655
No 351
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=31.48 E-value=1e+02 Score=27.96 Aligned_cols=66 Identities=15% Similarity=0.149 Sum_probs=44.3
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCC----CHHHHHHHHhhCCCCcccEEEECCEEEeechh
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE----NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDI 159 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~----d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~de 159 (191)
..+++|.+.| +....+.++.+.|++.|++.+.+|+.. |.+....+.+.++ .+ .++-++...||+-.
T Consensus 228 G~dvtIia~G----~~v~~Al~Aa~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~~t~--~v-vtvEE~~~~GGlGs 297 (356)
T PLN02683 228 GKDVTIVAFS----KMVGYALKAAEILAKEGISAEVINLRSIRPLDRDTINASVRKTN--RL-VTVEEGWPQHGVGA 297 (356)
T ss_pred CCCEEEEEcc----HHHHHHHHHHHHHHhcCCCEEEEECCCCCccCHHHHHHHHhhcC--eE-EEEeCCCcCCCHHH
Confidence 4578887777 578889999999999999999999854 4444333333322 22 33335666788765
No 352
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=31.04 E-value=55 Score=26.77 Aligned_cols=29 Identities=10% Similarity=0.153 Sum_probs=23.4
Q ss_pred CCcccEEEECCEEEeechhhHHHHHHHHhhc
Q 029558 141 WPTFPQLYIEGEFFGGCDITVGKLMDFLNLL 171 (191)
Q Consensus 141 ~~tvP~IfI~G~~VGG~del~~~lke~L~~l 171 (191)
...=|.+.|||+.+|+.+. +.++++|+++
T Consensus 139 C~~AP~~~Vn~~~~~~lt~--e~v~~il~~~ 167 (169)
T PRK07571 139 CGIAPAVVFDGKVAGKQTP--ESVLEKVQGW 167 (169)
T ss_pred cCCCCeEEECCEEeCCCCH--HHHHHHHHHH
Confidence 3456999999999999987 7777777763
No 353
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=30.98 E-value=89 Score=27.26 Aligned_cols=33 Identities=30% Similarity=0.499 Sum_probs=22.5
Q ss_pred CCcccEE--EECCEEEeechhhHHH---------HHHHHhhcCc
Q 029558 141 WPTFPQL--YIEGEFFGGCDITVGK---------LMDFLNLLNF 173 (191)
Q Consensus 141 ~~tvP~I--fI~G~~VGG~del~~~---------lke~L~~lg~ 173 (191)
...+|.+ |-||+.||.|-.+.+. +..+|+..|+
T Consensus 209 ~n~lP~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~gl 252 (273)
T KOG3171|consen 209 LNVLPTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEYGL 252 (273)
T ss_pred ccCCceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHcCC
Confidence 3456655 5599999998665543 4577777775
No 354
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=30.74 E-value=1.6e+02 Score=23.88 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=20.0
Q ss_pred CChhHHHHHHHHHHcCCCceEeec
Q 029558 102 QCGFSHTVVQILKSLNAPFETVNI 125 (191)
Q Consensus 102 ~Cp~C~kak~iL~~~gV~y~~vdV 125 (191)
.=+.++++...|+++|++|+..=.
T Consensus 10 D~~~~~~a~~~L~~~gi~~dv~V~ 33 (156)
T TIGR01162 10 DLPTMKKAADILEEFGIPYELRVV 33 (156)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEE
Confidence 568899999999999999876543
No 355
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=30.69 E-value=93 Score=27.77 Aligned_cols=68 Identities=12% Similarity=0.059 Sum_probs=43.6
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCC----CHHHHHHHHhhCCCCcccEEEECCEEEeechhhH
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE----NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITV 161 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~----d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~ 161 (191)
..++.|...| .....|.+|.+.|++.|++.+.+|+.. |.+......+.+ ..=.++-++...||+-..+
T Consensus 201 G~ditiia~G----~~v~~al~Aa~~L~~~Gi~~~VId~~~ikPlD~~~i~~~~~~t---~~vv~vEE~~~~gGlG~~v 272 (327)
T CHL00144 201 GNDITILTYS----RMRHHVLQAVKVLVEKGYDPEIIDLISLKPLDLGTISKSVKKT---HKVLIVEECMKTGGIGAEL 272 (327)
T ss_pred CCCEEEEEcc----HHHHHHHHHHHHHHhcCCCEEEEecCcCCCCCHHHHHHHHHhh---CcEEEEECCCCCCCHHHHH
Confidence 3467776666 478889999999999999999999854 444322222222 2222333556678876533
No 356
>PLN02263 serine decarboxylase
Probab=30.69 E-value=3.3e+02 Score=25.91 Aligned_cols=74 Identities=12% Similarity=0.136 Sum_probs=45.8
Q ss_pred CChhHHHHHHHHHHcCCCceEeecCCC-----HHHHHHHHhhCCCCcccEEEE---CCEEEeechhhHHHHHHHHhhcCc
Q 029558 102 QCGFSHTVVQILKSLNAPFETVNILEN-----EMLRQGLKEYSSWPTFPQLYI---EGEFFGGCDITVGKLMDFLNLLNF 173 (191)
Q Consensus 102 ~Cp~C~kak~iL~~~gV~y~~vdV~~d-----~~~r~~Lk~~sg~~tvP~IfI---~G~~VGG~del~~~lke~L~~lg~ 173 (191)
.-.+|.. +...-+|++...+.++++ ..+++.+.+-. ..|.+++ +....|.+|++ +.+.+++++.|+
T Consensus 186 ~aH~Sv~--KAa~llgi~~~~Vp~d~~g~mD~~aL~~aI~~d~---~~P~iVvataGTT~~GAiDpi-~eIa~i~~~~g~ 259 (470)
T PLN02263 186 ESHYSVF--KAARMYRMECVKVDTLVSGEIDCADFKAKLLANK---DKPAIINVNIGTTVKGAVDDL-DLVIKTLEECGF 259 (470)
T ss_pred CccHHHH--HHHHhcCCcceEeccCCCCcCcHHHHHHHHHhCC---CCcEEEEEEecCCCCcCCCCH-HHHHHHHHHcCC
Confidence 5666643 444446777777776542 34555554322 3576665 66677888885 555667777787
Q ss_pred -CCcceEEe
Q 029558 174 -SSTIWLVV 181 (191)
Q Consensus 174 -~~~~wl~~ 181 (191)
....|+-|
T Consensus 260 ~~~~iwlHV 268 (470)
T PLN02263 260 SQDRFYIHC 268 (470)
T ss_pred ccCCeeEEE
Confidence 55678865
No 357
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=30.60 E-value=73 Score=22.93 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=21.7
Q ss_pred CCcccEEEECCEEEeec--hhhHHHHHHHHhh
Q 029558 141 WPTFPQLYIEGEFFGGC--DITVGKLMDFLNL 170 (191)
Q Consensus 141 ~~tvP~IfI~G~~VGG~--del~~~lke~L~~ 170 (191)
...-|-.+|||+.|-|- +++.+++++.+++
T Consensus 43 C~~~pFAlVnG~~V~A~t~eeL~~kI~~~i~e 74 (78)
T PF07293_consen 43 CAKKPFALVNGEIVAAETAEELLEKIKEKIEE 74 (78)
T ss_pred CCCCccEEECCEEEecCCHHHHHHHHHHHHhc
Confidence 56789999999999764 4566666665554
No 358
>PRK13599 putative peroxiredoxin; Provisional
Probab=30.45 E-value=1.8e+02 Score=24.22 Aligned_cols=14 Identities=7% Similarity=-0.173 Sum_probs=8.6
Q ss_pred CCChhHHHHHHHHH
Q 029558 101 PQCGFSHTVVQILK 114 (191)
Q Consensus 101 p~Cp~C~kak~iL~ 114 (191)
.+||.|.+-...|.
T Consensus 39 ~~tpvCt~El~~l~ 52 (215)
T PRK13599 39 DFTPVCTTEFVEFA 52 (215)
T ss_pred CCCCcCHHHHHHHH
Confidence 37888876444443
No 359
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=30.24 E-value=1.5e+02 Score=25.38 Aligned_cols=78 Identities=21% Similarity=0.293 Sum_probs=46.9
Q ss_pred HHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHcCCC--ceEeecCCCHHHHHHHHhhCCCCcccEE--EECCE-
Q 029558 78 KSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAP--FETVNILENEMLRQGLKEYSSWPTFPQL--YIEGE- 152 (191)
Q Consensus 78 ~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~--y~~vdV~~d~~~r~~Lk~~sg~~tvP~I--fI~G~- 152 (191)
.+.++...++.+||+-..- +++--|..-.+=.++|...-+. |-.+|...- ..|....+...+|.| |.||.
T Consensus 75 kdf~~~~~kS~kVVcHFY~-~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~----PFlv~kL~IkVLP~v~l~k~g~~ 149 (211)
T KOG1672|consen 75 KDFFEEVKKSEKVVCHFYR-PEFFRCKIMDKHLEILAKRHVETRFIKVNAEKA----PFLVTKLNIKVLPTVALFKNGKT 149 (211)
T ss_pred HHHHHHhhcCceEEEEEEc-CCCcceehHHHHHHHHHHhcccceEEEEecccC----ceeeeeeeeeEeeeEEEEEcCEE
Confidence 4556666667776654331 2333477777777888777665 445554333 345555567789987 66885
Q ss_pred --EEeechhh
Q 029558 153 --FFGGCDIT 160 (191)
Q Consensus 153 --~VGG~del 160 (191)
.|-||++|
T Consensus 150 ~D~iVGF~dL 159 (211)
T KOG1672|consen 150 VDYVVGFTDL 159 (211)
T ss_pred EEEEeeHhhc
Confidence 34555554
No 360
>PHA02558 uvsW UvsW helicase; Provisional
Probab=30.21 E-value=3.2e+02 Score=25.61 Aligned_cols=66 Identities=14% Similarity=0.093 Sum_probs=41.2
Q ss_pred CcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEe-echh
Q 029558 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFG-GCDI 159 (191)
Q Consensus 88 ~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VG-G~de 159 (191)
.+++||.. .-.+|+.+.+.|++.+++...+.=....+.|+.+.+........++...+..+| |+|.
T Consensus 345 ~~~lV~~~------~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Di 411 (501)
T PHA02558 345 ENTFVMFK------YVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISI 411 (501)
T ss_pred CCEEEEEE------EHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecccccc
Confidence 34555545 345899999999999987766654444555555554443344455666666665 6653
No 361
>PTZ00110 helicase; Provisional
Probab=30.12 E-value=2.8e+02 Score=26.40 Aligned_cols=66 Identities=15% Similarity=0.139 Sum_probs=41.9
Q ss_pred HHHHHHHhh-cCCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEE
Q 029558 77 LKSTLDKVV-TGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLY 148 (191)
Q Consensus 77 ~~~~l~~~i-~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~If 148 (191)
+.+.++... ...+++||.. ....|..+.+.|...+++...+.=+...+.|+.+.+.......+.++
T Consensus 366 L~~ll~~~~~~~~k~LIF~~------t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILV 432 (545)
T PTZ00110 366 LKMLLQRIMRDGDKILIFVE------TKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMI 432 (545)
T ss_pred HHHHHHHhcccCCeEEEEec------ChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEE
Confidence 344455544 4568999988 67889999999999888766665555555555543333333444443
No 362
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=30.11 E-value=1.2e+02 Score=24.17 Aligned_cols=62 Identities=18% Similarity=0.239 Sum_probs=39.0
Q ss_pred HHHHHHHHHHcCCCceEeec-CCC-HHHHHHHHhhCCCCcccEE-EECCEEEeechhhHHHHHHH
Q 029558 106 SHTVVQILKSLNAPFETVNI-LEN-EMLRQGLKEYSSWPTFPQL-YIEGEFFGGCDITVGKLMDF 167 (191)
Q Consensus 106 C~kak~iL~~~gV~y~~vdV-~~d-~~~r~~Lk~~sg~~tvP~I-fI~G~~VGG~del~~~lke~ 167 (191)
-..+..+|++.|.+...+.+ .+| +++++.+++.......=.| .-+|.-+|..|-+.+.++++
T Consensus 24 ~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~D~t~eal~~l 88 (163)
T TIGR02667 24 GQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTGFTGRDVTPEALEPL 88 (163)
T ss_pred HHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCCcHHHHHHH
Confidence 34677789999988666554 333 5667777765321122233 33777788888777776554
No 363
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=30.08 E-value=43 Score=28.09 Aligned_cols=74 Identities=15% Similarity=0.026 Sum_probs=37.8
Q ss_pred CChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEE--eechhhHHHHHH--HHhhcCcCCcc
Q 029558 102 QCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFF--GGCDITVGKLMD--FLNLLNFSSTI 177 (191)
Q Consensus 102 ~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~V--GG~del~~~lke--~L~~lg~~~~~ 177 (191)
.|++|.....+=.+.+.++....+ +++.+.++....... =+++-+|++. -+..++.+.+++ +-..+.-++++
T Consensus 35 ~C~~Cdt~~t~~~~~~~~~~~~~~---~~I~~~i~~~~~~~~-~V~lTGGEP~~~~~l~~Ll~~l~~~g~~~~lETngti 110 (212)
T COG0602 35 RCPGCDTKYTWDFNYGKPGTPMSA---DEILADIKSLGYKAR-GVSLTGGEPLLQPNLLELLELLKRLGFRIALETNGTI 110 (212)
T ss_pred CCCCCCChhhhcccccCCCCccCH---HHHHHHHHhcCCCcc-eEEEeCCcCCCcccHHHHHHHHHhCCceEEecCCCCc
Confidence 588998665533333455555554 567777776522222 3456688872 244444444432 11223334566
Q ss_pred eE
Q 029558 178 WL 179 (191)
Q Consensus 178 wl 179 (191)
|.
T Consensus 111 ~~ 112 (212)
T COG0602 111 PV 112 (212)
T ss_pred cc
Confidence 54
No 364
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=30.02 E-value=2.7e+02 Score=27.55 Aligned_cols=65 Identities=15% Similarity=0.146 Sum_probs=44.3
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCC----CHHHHHHHHhhCCCCcccEEEECCEEEeechh
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE----NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDI 159 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~----d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~de 159 (191)
..+|+|.+.| .....|.+|.+.|++.|+..+.+|+.. |.+....+.+. .-..|.+.+..+||+-.
T Consensus 544 G~dvtIva~G----~~v~~Al~AA~~L~~~GI~v~VId~rsikPlD~~~i~sl~k~----~~~vVt~Ee~~~GG~Gs 612 (641)
T PLN02234 544 GERVALLGYG----SAVQRCLEAASMLSERGLKITVADARFCKPLDVALIRSLAKS----HEVLITVEEGSIGGFGS 612 (641)
T ss_pred CCCEEEEEec----HHHHHHHHHHHHHHhcCCCEEEEecCCcCCCCHHHHHHHHHh----CCEEEEECCCCCCcHHH
Confidence 3467777776 467889999999999999999999853 45544444332 22344455445588865
No 365
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=29.95 E-value=45 Score=27.59 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=15.2
Q ss_pred CCCcccEEEECCEEEeechh
Q 029558 140 SWPTFPQLYIEGEFFGGCDI 159 (191)
Q Consensus 140 g~~tvP~IfI~G~~VGG~de 159 (191)
|....|.++|+|+.++|.-.
T Consensus 212 gv~gTPt~~v~~~~~~g~~~ 231 (244)
T COG1651 212 GVNGTPTFIVNGKLVPGLPD 231 (244)
T ss_pred CCCcCCeEEECCeeecCCCC
Confidence 56778888888887777655
No 366
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=29.93 E-value=88 Score=27.25 Aligned_cols=91 Identities=19% Similarity=0.222 Sum_probs=54.8
Q ss_pred CcEEEEEecCCCCCCChhH-HHHHHHHHHcCCCceEee-cCCCHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHH-
Q 029558 88 NKVVLFMKGTKDFPQCGFS-HTVVQILKSLNAPFETVN-ILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKL- 164 (191)
Q Consensus 88 ~kVVIYsk~~~~~p~Cp~C-~kak~iL~~~gV~y~~vd-V~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~l- 164 (191)
++|.||... --.|+| +..++.|+..-.+|-.++ |+.. .+ +++---..|-=.|+-+|..++=++.+..+.
T Consensus 1 m~VlVYn~~----GvSp~~lkhtv~sLr~~~~p~y~v~~V~~~-~L---i~EpW~~~T~lLV~pGGaDlpY~~~l~g~g~ 72 (253)
T COG4285 1 MNVLVYNGL----GVSPYSLKHTVRSLRLFAPPYYAVDRVDAQ-FL---IKEPWEETTLLLVFPGGADLPYVQVLQGLGT 72 (253)
T ss_pred CceEEeCCC----CCChHHHHHHHHHHHhhccchheEEEeeeh-ee---ecCcchhceEEEEecCCCCchHHHHhcchhh
Confidence 367888653 247777 578999999888872222 2211 11 111111235566777887776666655543
Q ss_pred ---HHHHhhcCcCCcceEEeeCCcccccc
Q 029558 165 ---MDFLNLLNFSSTIWLVVCDLYAFCSA 190 (191)
Q Consensus 165 ---ke~L~~lg~~~~~wl~~~~~~~~~~~ 190 (191)
+.+.+. +--.|+.|-|--|-++
T Consensus 73 a~i~~yvk~----GG~fLGiCAG~YFg~~ 97 (253)
T COG4285 73 ARIKNYVKE----GGNFLGICAGGYFGSA 97 (253)
T ss_pred hhHHHHHhc----CCeEEEEeccccccce
Confidence 345554 6679999998777554
No 367
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=29.71 E-value=1e+02 Score=29.14 Aligned_cols=65 Identities=12% Similarity=0.136 Sum_probs=43.0
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCC----CHH-HHHHHHhhCCCCcccEEEECCEEEeechh
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE----NEM-LRQGLKEYSSWPTFPQLYIEGEFFGGCDI 159 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~----d~~-~r~~Lk~~sg~~tvP~IfI~G~~VGG~de 159 (191)
..+++|.+.| .....+.++.+.|++.|++.+.+|+.. |.+ +.+.+++ ++. + +++-+|...||+-.
T Consensus 340 G~DvtIva~G----~~v~~Al~Aa~~L~~~GI~~~VIdl~tlkPlD~~~i~~sv~k-t~~--v-vtvEE~~~~gGlG~ 409 (464)
T PRK11892 340 GKDVTIVSFS----IGMTYALKAAEELAKEGIDAEVIDLRTIRPMDTETIVESVKK-TNR--L-VTVEEGWPQSGVGA 409 (464)
T ss_pred CCCEEEEEcc----HHHHHHHHHHHHHHhcCCCEEEEECCCCCcCCHHHHHHHHHh-cCe--E-EEEeCCCcCCcHHH
Confidence 3467777776 478899999999999999999999853 333 3333332 221 2 33445666677654
No 368
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=29.62 E-value=1.9e+02 Score=27.69 Aligned_cols=58 Identities=28% Similarity=0.427 Sum_probs=41.6
Q ss_pred hcChHHHHHHHHhhcCCcEEEEEecCCCCC--CChhHHHHHHHHHHc-----CCCceEeecCCCHHH
Q 029558 72 ALTPELKSTLDKVVTGNKVVLFMKGTKDFP--QCGFSHTVVQILKSL-----NAPFETVNILENEML 131 (191)
Q Consensus 72 ~~~~~~~~~l~~~i~~~kVVIYsk~~~~~p--~Cp~C~kak~iL~~~-----gV~y~~vdV~~d~~~ 131 (191)
.+++..++.++++-++-+|.+|..+ +.| .=.+=.+++++|+++ ++.++.+|-..+++.
T Consensus 34 tLS~~T~~~L~~L~~pV~I~~~~s~--~~~~~~~~~~~~v~~lL~eY~~~s~~i~~~~iDP~~~~~~ 98 (552)
T TIGR03521 34 TLSPASKEVVKKLDDPVSIDIFLDG--ELPADFRRLQKETRQLLEEFAAYNPNIKFRFVNPLEEEDE 98 (552)
T ss_pred ecCHHHHHHHHhCCCCEEEEEEEcC--CCchHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCcchh
Confidence 5788899999999888888888663 111 011346788899887 578899998776544
No 369
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=29.08 E-value=94 Score=25.67 Aligned_cols=18 Identities=17% Similarity=0.460 Sum_probs=14.8
Q ss_pred CCChhHHHHHHHHHHcCC
Q 029558 101 PQCGFSHTVVQILKSLNA 118 (191)
Q Consensus 101 p~Cp~C~kak~iL~~~gV 118 (191)
+.|+||+++-+.+...+-
T Consensus 128 ~~~~~~~~a~~~~~~~~~ 145 (244)
T COG1651 128 PACPYCRRAAQAARCAAD 145 (244)
T ss_pred CCcHHHHHHHHHHHHhcc
Confidence 699999999888877654
No 370
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=28.99 E-value=92 Score=25.06 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=20.6
Q ss_pred HHHhhCCCCcccEEEE-CCEEEeechh
Q 029558 134 GLKEYSSWPTFPQLYI-EGEFFGGCDI 159 (191)
Q Consensus 134 ~Lk~~sg~~tvP~IfI-~G~~VGG~de 159 (191)
.+.+..|...+|.+++ ||+.+.|+..
T Consensus 163 ~l~~~~gi~gtPtii~~~G~~~~G~~~ 189 (197)
T cd03020 163 ALGRQLGVNGTPTIVLADGRVVPGAPP 189 (197)
T ss_pred HHHHHcCCCcccEEEECCCeEecCCCC
Confidence 4455568999999988 5899998876
No 371
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=28.89 E-value=2.6e+02 Score=23.25 Aligned_cols=73 Identities=23% Similarity=0.290 Sum_probs=47.8
Q ss_pred hhcChHHHHHHHHhhcC-CcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecC-CCHHHHHHHHhhCCCCcccEEE
Q 029558 71 AALTPELKSTLDKVVTG-NKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNIL-ENEMLRQGLKEYSSWPTFPQLY 148 (191)
Q Consensus 71 ~~~~~~~~~~l~~~i~~-~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~-~d~~~r~~Lk~~sg~~tvP~If 148 (191)
...++++++.++++-.. -+++|.+.. -=.+|..+...+|++|-..=-. .....+++|+++ +.+.=-++.
T Consensus 45 ~~~tpe~~~W~~e~k~~gi~v~vvSNn--------~e~RV~~~~~~l~v~fi~~A~KP~~~~fr~Al~~m-~l~~~~vvm 115 (175)
T COG2179 45 PDATPELRAWLAELKEAGIKVVVVSNN--------KESRVARAAEKLGVPFIYRAKKPFGRAFRRALKEM-NLPPEEVVM 115 (175)
T ss_pred CCCCHHHHHHHHHHHhcCCEEEEEeCC--------CHHHHHhhhhhcCCceeecccCccHHHHHHHHHHc-CCChhHEEE
Confidence 46789999999998777 577777663 1267888888888887654332 134667777765 333334455
Q ss_pred ECCE
Q 029558 149 IEGE 152 (191)
Q Consensus 149 I~G~ 152 (191)
|+++
T Consensus 116 VGDq 119 (175)
T COG2179 116 VGDQ 119 (175)
T ss_pred Ecch
Confidence 5553
No 372
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=28.84 E-value=75 Score=32.22 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=33.6
Q ss_pred cEEEECCEEEeechhhHHHHHHHHhhcCcCCcceEEeeCCcc
Q 029558 145 PQLYIEGEFFGGCDITVGKLMDFLNLLNFSSTIWLVVCDLYA 186 (191)
Q Consensus 145 P~IfI~G~~VGG~del~~~lke~L~~lg~~~~~wl~~~~~~~ 186 (191)
=+|.|||+.+-|... +..-+.++.+.+.-...|++|-||-
T Consensus 395 viV~INg~cvlGhTH--AqaV~~fqaiPvg~~V~L~lcRgye 434 (984)
T KOG3209|consen 395 VIVHINGECVLGHTH--AQAVKRFQAIPVGQSVDLVLCRGYE 434 (984)
T ss_pred EEEEECCceeccccH--HHHHHHhhccccCCeeeEEEecCcc
Confidence 467889999988877 6666888888888999999999995
No 373
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family.
Probab=28.84 E-value=1.9e+02 Score=25.00 Aligned_cols=72 Identities=18% Similarity=0.153 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCCCceEeecCCCHHHHHHHHhh--CC--CCcccEEEECCEEEeec--hhh----HHHHHHHHhhcCcCCc
Q 029558 107 HTVVQILKSLNAPFETVNILENEMLRQGLKEY--SS--WPTFPQLYIEGEFFGGC--DIT----VGKLMDFLNLLNFSST 176 (191)
Q Consensus 107 ~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~--sg--~~tvP~IfI~G~~VGG~--del----~~~lke~L~~lg~~~~ 176 (191)
+.+.++++++|++.++..+.-+ ++.+ ..+. ++ ..-+|+.-|||..+|+. .++ .+.+.+....-..+..
T Consensus 215 ~~il~la~~~g~~v~e~~i~~~-eL~~-adevfltns~~gv~PV~~id~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~ 292 (298)
T TIGR01122 215 DTVITLAKELGIEVVEQPISRE-ELYT-ADEAFFTGTAAEITPIREVDGRKIGNGRRGPVTKKLQEAFFDLVTGGTEDYW 292 (298)
T ss_pred HHHHHHHHHcCCcEEEEeCCHH-HHhh-CCEEEEcCCcceEEEEEEECCEECCCCCCChHHHHHHHHHHHHHcCCCCCcC
Confidence 4667788899999888887532 2211 1121 22 45579999999988743 233 3333333332222455
Q ss_pred ceEE
Q 029558 177 IWLV 180 (191)
Q Consensus 177 ~wl~ 180 (191)
.|..
T Consensus 293 ~w~~ 296 (298)
T TIGR01122 293 GWLT 296 (298)
T ss_pred CCce
Confidence 6754
No 374
>cd04333 ProX_deacylase This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.
Probab=28.63 E-value=98 Score=23.82 Aligned_cols=34 Identities=15% Similarity=0.079 Sum_probs=22.7
Q ss_pred HHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCC
Q 029558 107 HTVVQILKSLNAPFETVNILENEMLRQGLKEYSS 140 (191)
Q Consensus 107 ~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg 140 (191)
+++.++|++++++|+.++........+++.+..|
T Consensus 2 ~~~~~~L~~~~i~~~~~~~~~~~~t~~e~a~~~~ 35 (148)
T cd04333 2 ERVRAFLAARGLDLEVIELPESTRTAALAAEALG 35 (148)
T ss_pred HHHHHHHHHCCCCCeEEECCCCcchHHHHHHHcC
Confidence 5788999999999998887642222233444444
No 375
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=28.53 E-value=86 Score=23.26 Aligned_cols=24 Identities=17% Similarity=0.050 Sum_probs=11.8
Q ss_pred hhhHHHHHHHHhhcCcCCcceEEe
Q 029558 158 DITVGKLMDFLNLLNFSSTIWLVV 181 (191)
Q Consensus 158 del~~~lke~L~~lg~~~~~wl~~ 181 (191)
+.-.+.++..++++|+.....+.|
T Consensus 133 Kp~~~~~~~~~~~~~~~p~~~~~v 156 (176)
T PF13419_consen 133 KPDPDAYRRALEKLGIPPEEILFV 156 (176)
T ss_dssp TTSHHHHHHHHHHHTSSGGGEEEE
T ss_pred hhHHHHHHHHHHHcCCCcceEEEE
Confidence 333345555555555544444443
No 376
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=28.51 E-value=1.1e+02 Score=25.53 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=19.8
Q ss_pred CChh-HHH----HHHHHHHcC----CCceEe--ecCCCHHHHHHHHhhCC
Q 029558 102 QCGF-SHT----VVQILKSLN----APFETV--NILENEMLRQGLKEYSS 140 (191)
Q Consensus 102 ~Cp~-C~k----ak~iL~~~g----V~y~~v--dV~~d~~~r~~Lk~~sg 140 (191)
.||. |.. ..+++++++ .++..+ -+|-+.+..+.|+++..
T Consensus 78 ~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~ 127 (207)
T COG1999 78 HCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAE 127 (207)
T ss_pred CCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhc
Confidence 6776 543 444555554 333333 33333344666777654
No 377
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=28.23 E-value=69 Score=25.71 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=23.7
Q ss_pred CCcccEEEECCEEEeechhhHHHHHHHHhhc
Q 029558 141 WPTFPQLYIEGEFFGGCDITVGKLMDFLNLL 171 (191)
Q Consensus 141 ~~tvP~IfI~G~~VGG~del~~~lke~L~~l 171 (191)
...=|.+.|||+.+|+.+. +.++++++++
T Consensus 126 C~~aP~~~in~~~~~~lt~--~~~~~il~~~ 154 (156)
T PRK05988 126 CACSPAAMLDGEVHGRLDP--QRLDALLAEA 154 (156)
T ss_pred cCCCCeEEECCEEeCCCCH--HHHHHHHHHh
Confidence 4566999999999999987 7777777664
No 378
>KOG2454 consensus Betaine aldehyde dehydrogenase [Energy production and conversion]
Probab=28.21 E-value=1.3e+02 Score=28.53 Aligned_cols=78 Identities=15% Similarity=0.215 Sum_probs=51.4
Q ss_pred hHHHHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecC-CCHHHHHHHHhhCCCCcccEEEECCEE
Q 029558 75 PELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNIL-ENEMLRQGLKEYSSWPTFPQLYIEGEF 153 (191)
Q Consensus 75 ~~~~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~-~d~~~r~~Lk~~sg~~tvP~IfI~G~~ 153 (191)
..+-..+..+...|-||+=......-.+|-||+-++..|...|-+.+-+++- .-++..+.|...+|... .+||+.+.
T Consensus 204 N~lgPiiaAlFsGNaIVvK~SE~~~WS~~fy~e~ir~~L~a~g~~p~LVq~itclpd~a~~ltSh~g~kh--itFiGSqp 281 (583)
T KOG2454|consen 204 NILGPIIAALFSGNAIVVKVSEHASWSGCFYFEIIRAALAAVGAPPNLVQVITCLPDTAEALTSHSGVKH--ITFIGSQP 281 (583)
T ss_pred hhhhHHHHHHhcCCeEEEEeecceeeehhhHHHHHHHHHHHcCCCcchhheeecCcchHhHhhcCCCcce--EEEecCcH
Confidence 3445566777788888876554333346999999999999999998877763 23556666655544433 34555544
Q ss_pred E
Q 029558 154 F 154 (191)
Q Consensus 154 V 154 (191)
|
T Consensus 282 v 282 (583)
T KOG2454|consen 282 V 282 (583)
T ss_pred H
Confidence 3
No 379
>PRK02478 Maf-like protein; Reviewed
Probab=28.19 E-value=3.5e+02 Score=22.47 Aligned_cols=74 Identities=15% Similarity=0.094 Sum_probs=42.4
Q ss_pred HHHHHHHHHcCCCceEe--ecCCC------------H-HHHHHH---H-----h-hC-----CCCcccEEEECCEEEeec
Q 029558 107 HTVVQILKSLNAPFETV--NILEN------------E-MLRQGL---K-----E-YS-----SWPTFPQLYIEGEFFGGC 157 (191)
Q Consensus 107 ~kak~iL~~~gV~y~~v--dV~~d------------~-~~r~~L---k-----~-~s-----g~~tvP~IfI~G~~VGG~ 157 (191)
.+=+++|+++|++|+.+ |+++. + +.-..+ | + +. +..| +|.++|+.+|=.
T Consensus 12 prR~elL~~~g~~f~v~~~~idE~~~~~~~~~~~~~p~~~v~~lA~~Ka~~v~~~~~~~ivI~aDT--vV~~~g~ilgKP 89 (199)
T PRK02478 12 PFRRALLENAGLEFSAAAADIDERAVEAPLEESGATPEDVALVLAEAKAIDVSERFPGALVIGCDQ--TMSLGDEVFHKP 89 (199)
T ss_pred HHHHHHHHHCCCCeEEecCCCCCCccccccccCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEeCe--EEEECCEEecCC
Confidence 56678999999998866 44442 1 110111 1 1 10 1222 456788888876
Q ss_pred hhhHHHHHHHHhhcCcCCcceEEee
Q 029558 158 DITVGKLMDFLNLLNFSSTIWLVVC 182 (191)
Q Consensus 158 del~~~lke~L~~lg~~~~~wl~~~ 182 (191)
.+..++.+-+-..-|-.-..|-+||
T Consensus 90 ~~~~eA~~~L~~lsG~~h~V~T~v~ 114 (199)
T PRK02478 90 KDMEEARRHLQKLSGKTHQLNSAVV 114 (199)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEEEE
Confidence 6655665555555565556666666
No 380
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=28.14 E-value=2.7e+02 Score=21.11 Aligned_cols=68 Identities=21% Similarity=0.267 Sum_probs=48.5
Q ss_pred cChHHHHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCE
Q 029558 73 LTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGE 152 (191)
Q Consensus 73 ~~~~~~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~ 152 (191)
...+++..++.+++..++++=++ +..+.|..-......+--...++.++.++-+.--..+|+++..|.
T Consensus 3 ~~~~v~~~L~~avkTGkvilG~k------------~tiK~lk~gkaKliiiAsN~P~~~k~~ieyYAkLs~ipV~~y~Gt 70 (100)
T COG1911 3 MGDDVEKELKLAVKTGKVILGSK------------RTIKSLKLGKAKLIIIASNCPKELKEDIEYYAKLSDIPVYVYEGT 70 (100)
T ss_pred ccchHHHHHHHHHhcCCEEEehH------------HHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHcCCcEEEecCC
Confidence 34677888999999999887544 556666665555555544445777887877766668999999885
No 381
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=28.05 E-value=90 Score=23.22 Aligned_cols=24 Identities=13% Similarity=0.068 Sum_probs=17.9
Q ss_pred HHHHHhhCCCCcccEEEECCEEEe
Q 029558 132 RQGLKEYSSWPTFPQLYIEGEFFG 155 (191)
Q Consensus 132 r~~Lk~~sg~~tvP~IfI~G~~VG 155 (191)
.+.+++......+|+..|+.+..|
T Consensus 61 ~~~i~~~~~~~~ipv~~I~~~~Yg 84 (99)
T cd05565 61 YDELKKDTDRLGIKLVTTTGKQYI 84 (99)
T ss_pred HHHHHHHhhhcCCCEEEeCHHHHh
Confidence 444666666778999999987766
No 382
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=27.98 E-value=1.8e+02 Score=23.19 Aligned_cols=28 Identities=14% Similarity=0.113 Sum_probs=23.1
Q ss_pred CChhHHHHHHHHHHcCCCceEeecCCCH
Q 029558 102 QCGFSHTVVQILKSLNAPFETVNILENE 129 (191)
Q Consensus 102 ~Cp~C~kak~iL~~~gV~y~~vdV~~d~ 129 (191)
++.+-..+.++|++.|++++.+..+.++
T Consensus 7 g~~~~~~l~~~l~~~g~~~~~~~~~~~~ 34 (188)
T TIGR00888 7 GSQYTQLIARRLRELGVYSELVPNTTPL 34 (188)
T ss_pred CchHHHHHHHHHHHcCCEEEEEeCCCCH
Confidence 6788889999999999988887766543
No 383
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=27.98 E-value=3.2e+02 Score=22.02 Aligned_cols=74 Identities=14% Similarity=0.084 Sum_probs=45.2
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCC----cccEEEECCEEEeechhhHHHHH
Q 029558 90 VVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWP----TFPQLYIEGEFFGGCDITVGKLM 165 (191)
Q Consensus 90 VVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~----tvP~IfI~G~~VGG~del~~~lk 165 (191)
+++++-|-.+.+....+.++.+.|++.||..-.+=|-.. ...+|+.+.|.+ ..|.++.- .++.+....+
T Consensus 112 ~IllTDG~s~~~~~~~~~~~a~~lk~~gV~i~~vGiG~~--~~~el~~ia~~~~~~~~~~~~~~~-----~f~~l~~~~~ 184 (192)
T cd01473 112 TMLFTDGNDTSASKKELQDISLLYKEENVKLLVVGVGAA--SENKLKLLAGCDINNDNCPNVIKT-----EWNNLNGISK 184 (192)
T ss_pred EEEEecCCCCCcchhhHHHHHHHHHHCCCEEEEEEeccc--cHHHHHHhcCCCCCCCCCCeEEec-----chhhHHHHHH
Confidence 556655522223344577888899999998777766432 245688888764 34555543 2556555555
Q ss_pred HHHhh
Q 029558 166 DFLNL 170 (191)
Q Consensus 166 e~L~~ 170 (191)
.+.++
T Consensus 185 ~l~~~ 189 (192)
T cd01473 185 FLTDK 189 (192)
T ss_pred HHHhh
Confidence 55554
No 384
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=27.97 E-value=3e+02 Score=21.60 Aligned_cols=30 Identities=13% Similarity=-0.020 Sum_probs=13.5
Q ss_pred EeechhhHHHHHHHHhhcCcCCcceEEeeC
Q 029558 154 FGGCDITVGKLMDFLNLLNFSSTIWLVVCD 183 (191)
Q Consensus 154 VGG~del~~~lke~L~~lg~~~~~wl~~~~ 183 (191)
+|-.+.-.+.+...++.+|++.+..+.|=|
T Consensus 144 ~~~~KP~~~~~~~~~~~~~~~p~~~~~vgD 173 (198)
T TIGR01428 144 VRAYKPAPQVYQLALEALGVPPDEVLFVAS 173 (198)
T ss_pred cCCCCCCHHHHHHHHHHhCCChhhEEEEeC
Confidence 333333334455555555554444444433
No 385
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=27.90 E-value=2e+02 Score=28.13 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=34.2
Q ss_pred HHHHHHHHhhc-CCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCC
Q 029558 76 ELKSTLDKVVT-GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN 128 (191)
Q Consensus 76 ~~~~~l~~~i~-~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d 128 (191)
.+.+.+++..+ ..+++||.. +...++++.++|.++|++...+.=+.+
T Consensus 434 ~L~~~L~~~~~~g~~viIf~~------t~~~ae~L~~~L~~~gi~~~~~h~~~~ 481 (652)
T PRK05298 434 DLLSEIRKRVAKGERVLVTTL------TKRMAEDLTDYLKELGIKVRYLHSDID 481 (652)
T ss_pred HHHHHHHHHHhCCCEEEEEeC------CHHHHHHHHHHHhhcceeEEEEECCCC
Confidence 44555555544 567899987 788999999999999998766643333
No 386
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=27.88 E-value=2.4e+02 Score=23.95 Aligned_cols=36 Identities=31% Similarity=0.434 Sum_probs=28.8
Q ss_pred cCCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecC
Q 029558 86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNIL 126 (191)
Q Consensus 86 ~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~ 126 (191)
....+.+|.+. .|+.|......|...+-+++.+-|.
T Consensus 108 ~~~rlalFvkd-----~C~~C~~~~~~l~a~~~~~Diylvg 143 (200)
T TIGR03759 108 GGGRLALFVKD-----DCVACDARVQRLLADNAPLDLYLVG 143 (200)
T ss_pred CCCeEEEEeCC-----CChHHHHHHHHHhcCCCceeEEEec
Confidence 34578999996 9999998888887777777777666
No 387
>PRK13669 hypothetical protein; Provisional
Probab=27.74 E-value=92 Score=22.52 Aligned_cols=30 Identities=17% Similarity=0.101 Sum_probs=21.2
Q ss_pred CCcccEEEECCEEEeech--hhHHHHHHHHhh
Q 029558 141 WPTFPQLYIEGEFFGGCD--ITVGKLMDFLNL 170 (191)
Q Consensus 141 ~~tvP~IfI~G~~VGG~d--el~~~lke~L~~ 170 (191)
...-|-.+|||+.|-|-+ ++.+.+++.+++
T Consensus 43 C~~~~FAlVng~~V~a~t~eeL~~kI~~~i~e 74 (78)
T PRK13669 43 CSEGLFALVNGEVVEGETPEELVENIYAHLEE 74 (78)
T ss_pred cccCceEEECCeEeecCCHHHHHHHHHHHHhh
Confidence 456799999999997744 555556555554
No 388
>PF04609 MCR_C: Methyl-coenzyme M reductase operon protein C; InterPro: IPR007687 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein C.; GO: 0003824 catalytic activity, 0015948 methanogenesis
Probab=27.67 E-value=98 Score=27.38 Aligned_cols=85 Identities=12% Similarity=0.080 Sum_probs=50.8
Q ss_pred HHHHHhhcCCcEEEEEecCCCCCCChhHH--HHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEee
Q 029558 79 STLDKVVTGNKVVLFMKGTKDFPQCGFSH--TVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGG 156 (191)
Q Consensus 79 ~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~--kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG 156 (191)
++=.++++++++.+|.-| +-..|. +++.+|+..+++...-.-..+-++.+. ...+...++.-.-+++-++-
T Consensus 121 ~~E~~~I~~Hd~AV~~~G-----n~~~~I~~K~~~ll~~i~iPiVv~~~P~d~~~e~~--YVg~iGR~~~R~r~~eei~~ 193 (268)
T PF04609_consen 121 PKEIEQINEHDLAVFHLG-----NFKSCIIYKKRHLLRGIDIPIVVCGGPVDFELEDI--YVGGIGRIMHRLRKGEEIRA 193 (268)
T ss_pred HHHHHHHhhcCEEEEEeC-----CHHHHHHHHHHHHHhhcCCcEEEecCCcccccccc--eecccccceeccCchhhHHH
Confidence 344568899999999998 777784 578888888988322211111111111 12233444555556666777
Q ss_pred chhhHHHHHHHHhh
Q 029558 157 CDITVGKLMDFLNL 170 (191)
Q Consensus 157 ~del~~~lke~L~~ 170 (191)
.+++.+.+.+.+.+
T Consensus 194 l~~iV~~v~~vl~~ 207 (268)
T PF04609_consen 194 LDKIVEEVTKVLDK 207 (268)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777666555543
No 389
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=27.62 E-value=2.6e+02 Score=27.59 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=33.6
Q ss_pred HHHHHHHHhhc-CCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCC
Q 029558 76 ELKSTLDKVVT-GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN 128 (191)
Q Consensus 76 ~~~~~l~~~i~-~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d 128 (191)
.+.+.+++.++ ..+++||.. +...++++.++|.++|++...+.=+.+
T Consensus 430 ~Ll~eI~~~~~~g~~vLIf~~------tk~~ae~L~~~L~~~gi~~~~lh~~~~ 477 (655)
T TIGR00631 430 DLLSEIRQRVARNERVLVTTL------TKKMAEDLTDYLKELGIKVRYLHSEID 477 (655)
T ss_pred HHHHHHHHHHcCCCEEEEEEC------CHHHHHHHHHHHhhhccceeeeeCCCC
Confidence 44455555444 457888877 789999999999999998766643333
No 390
>cd03083 TRX_Fd_NuoE_hoxF TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, hoxF; composed of proteins similar to the NAD-reducing hydrogenase (hoxS) alpha subunit of Alcaligenes eutrophus H16. HoxS is a cytoplasmic hydrogenase catalyzing the oxidation of molecular hydrogen accompanied by the reduction of NAD. It is composed of four structural subunits encoded by the genes hoxF, hoxU, hoxY and hoxH. The hoxF protein (or alpha subunit) is a fusion protein containing an N-terminal NuoE-like domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. HoxF may be involved
Probab=27.47 E-value=82 Score=22.01 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=20.1
Q ss_pred CcccEEEECCEEEeechhhHHHHHHHHhh
Q 029558 142 PTFPQLYIEGEFFGGCDITVGKLMDFLNL 170 (191)
Q Consensus 142 ~tvP~IfI~G~~VGG~del~~~lke~L~~ 170 (191)
..=|.+.|||..++..+. +...++++.
T Consensus 53 ~~~P~v~V~~~~y~~v~~--~~v~~iv~~ 79 (80)
T cd03083 53 DQGPALLINNRVFTRLTP--GRIDQIAEL 79 (80)
T ss_pred CCCCeEEECCEEECCCCH--HHHHHHHhc
Confidence 345999999998888877 666666654
No 391
>TIGR00172 maf MAF protein. This nonessential gene causes inhibition of septation when overexpressed. A member of the family is found in the Archaeon Pyrococcus horikoshii and another in the round worm Caenorhabditis elegans.
Probab=27.42 E-value=3.5e+02 Score=22.18 Aligned_cols=75 Identities=17% Similarity=0.190 Sum_probs=43.5
Q ss_pred HHHHHHHHHcCCCceEe--ecCCC------H-HHHHH--------HHh-hC-----CCCcccEEEECCEEEeechhhHHH
Q 029558 107 HTVVQILKSLNAPFETV--NILEN------E-MLRQG--------LKE-YS-----SWPTFPQLYIEGEFFGGCDITVGK 163 (191)
Q Consensus 107 ~kak~iL~~~gV~y~~v--dV~~d------~-~~r~~--------Lk~-~s-----g~~tvP~IfI~G~~VGG~del~~~ 163 (191)
.+=+++|+++|++|+.+ |++++ + +.-.. +.+ +- +..| +|..+|+.+|=..+..++
T Consensus 12 prR~elL~~~g~~f~v~~~~idE~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~vI~aDT--vV~~~g~ilgKP~~~~eA 89 (183)
T TIGR00172 12 PRRKELLEELGISFEQIVSEFDEKSLKTTSPRELVYRLAKEKAQAVAELLADALIIGADT--VVILDGEIYGKPKDKEEA 89 (183)
T ss_pred HHHHHHHHHCCCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCEEEEeCe--EEEECCEEecCCCCHHHH
Confidence 66788999999999865 45441 2 11111 111 10 1222 256688888876665566
Q ss_pred HHHHHhhcCcCCcceEEeeC
Q 029558 164 LMDFLNLLNFSSTIWLVVCD 183 (191)
Q Consensus 164 lke~L~~lg~~~~~wl~~~~ 183 (191)
.+-+...-|-.-..|-+||-
T Consensus 90 ~~~L~~lsG~~h~V~Tgv~l 109 (183)
T TIGR00172 90 AEFLRKLSGQEHEVYTAVAL 109 (183)
T ss_pred HHHHHHhCCCCcEEEEEEEE
Confidence 55554555666677777774
No 392
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=27.40 E-value=1.9e+02 Score=28.32 Aligned_cols=66 Identities=15% Similarity=0.142 Sum_probs=46.8
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCC----CHHHHHHHHhhCCCCcccEEEECCEEEeechhh
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE----NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDIT 160 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~----d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del 160 (191)
..+++|.+.| .....|.+|.+.|++.|++.+.+|+.. |.+....+.+ .....+..++...||+...
T Consensus 504 G~ditIva~G----~~v~~aleAa~~L~~~Gi~v~VId~~~lkPlD~~~i~sv~k----~~~vvvveE~~~~gG~g~~ 573 (641)
T PRK12571 504 GPDVAILSVG----AHLHECLDAADLLEAEGISVTVADPRFVKPLDEALTDLLVR----HHIVVIVEEQGAMGGFGAH 573 (641)
T ss_pred CCCEEEEEec----HHHHHHHHHHHHHHhcCCCEEEEEcCcCCCcCHHHHHHHhh----hCCEEEEECCCCCCCHHHH
Confidence 3578888777 468889999999999999999999853 4444444432 2246677777667888653
No 393
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=27.32 E-value=2.2e+02 Score=25.78 Aligned_cols=83 Identities=22% Similarity=0.273 Sum_probs=49.5
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCC-----HHHHHHHHhhCCCCcccEEEE--CCE-EEeech
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILEN-----EMLRQGLKEYSSWPTFPQLYI--EGE-FFGGCD 158 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d-----~~~r~~Lk~~sg~~tvP~IfI--~G~-~VGG~d 158 (191)
..+.++|... .+.||. .+...-+|+....+.++++ .++++.|.+.......|.++| -|. .-|.+|
T Consensus 139 ~~~~~i~~s~-----~aH~S~--~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D 211 (373)
T PF00282_consen 139 IPKPVIYVSE-----QAHYSI--EKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAID 211 (373)
T ss_dssp CSSEEEEEET-----TS-THH--HHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-
T ss_pred cccccccccc-----ccccHH--HHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCccccccc
Confidence 3566777774 788886 5566677888777777753 456666665544556774443 444 456777
Q ss_pred hhHHHHHHHHhhcCcCCcceEEe
Q 029558 159 ITVGKLMDFLNLLNFSSTIWLVV 181 (191)
Q Consensus 159 el~~~lke~L~~lg~~~~~wl~~ 181 (191)
++ +.+.++.++. ..|+-|
T Consensus 212 ~l-~~i~~i~~~~----~~wlHV 229 (373)
T PF00282_consen 212 PL-EEIADICEKY----NIWLHV 229 (373)
T ss_dssp SH-HHHHHHHHHC----T-EEEE
T ss_pred CH-HHHhhhcccc----ceeeee
Confidence 75 4556666663 468876
No 394
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.23 E-value=1.3e+02 Score=28.04 Aligned_cols=83 Identities=16% Similarity=0.116 Sum_probs=49.5
Q ss_pred EEEEecCCCCCCChhHHHHHHHHHHcCCCceEe---------ecCC--CHHH---HHHHHhhCCCCcccEEEECCE----
Q 029558 91 VLFMKGTKDFPQCGFSHTVVQILKSLNAPFETV---------NILE--NEML---RQGLKEYSSWPTFPQLYIEGE---- 152 (191)
Q Consensus 91 VIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~v---------dV~~--d~~~---r~~Lk~~sg~~tvP~IfI~G~---- 152 (191)
-||..++. ++|+.|++..++|..+||+.+.. +|.- ++.+ --.|+.+.+....|+...+=-
T Consensus 171 riYlgs~~--~ns~~~e~l~~v~aq~~I~v~~~esp~~AEtrnit~YVHpPlflndfsL~aif~~~~~p~yvYKlyPEGP 248 (431)
T COG4408 171 RIYLGSQH--GNSGSAEMLTAVLAQHGIDVEPCESPLAAETRNITLYVHPPLFLNDFSLQAIFYPEQRPQYVYKLYPEGP 248 (431)
T ss_pred heeeccCC--CCChHHHHHHHHHHhcCCceEEcCChhhhhhcccceeecCcchhhhhHHHHHhCCcCCCceeEecCCCCC
Confidence 46777644 48999999999999999986543 3321 1111 112555666666776655432
Q ss_pred ----EEeechhhHHHHHHHHhhcCcCC
Q 029558 153 ----FFGGCDITVGKLMDFLNLLNFSS 175 (191)
Q Consensus 153 ----~VGG~del~~~lke~L~~lg~~~ 175 (191)
.|+...-+-..+.++|.++|+.+
T Consensus 249 It~~lIr~mr~lwke~m~ll~r~~ve~ 275 (431)
T COG4408 249 ITPALIRDMRGLWKEYMRLLNRLGVEE 275 (431)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 22333333334557888888754
No 395
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.07 E-value=3.3e+02 Score=25.15 Aligned_cols=55 Identities=15% Similarity=0.116 Sum_probs=36.9
Q ss_pred HHHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHh
Q 029558 77 LKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKE 137 (191)
Q Consensus 77 ~~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~ 137 (191)
+.+.+.+.......+||.. ....|+.+.+.|.+.|+....+.=....+.|+...+
T Consensus 216 l~~~l~~~~~~~~~IIF~~------s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~ 270 (470)
T TIGR00614 216 LLRFIRKEFKGKSGIIYCP------SRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHH 270 (470)
T ss_pred HHHHHHHhcCCCceEEEEC------cHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHH
Confidence 3344443334556688977 789999999999999988766654444555555443
No 396
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=27.00 E-value=1.8e+02 Score=23.05 Aligned_cols=39 Identities=15% Similarity=0.058 Sum_probs=24.0
Q ss_pred cEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCC
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE 127 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~ 127 (191)
.|++++-|..+......-.++.+.+++.||..-.+=|..
T Consensus 112 ~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~vgig~ 150 (186)
T cd01480 112 FLLVITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAVGS 150 (186)
T ss_pred EEEEEeCCCcCCCcchhHHHHHHHHHHCCCEEEEEecCc
Confidence 456665553222224455677778889999877776644
No 397
>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase. Sequences scoring between the trusted and noise cutoffs include fragmentary and aberrant sequences in which generally well-conserved motifs are missing or altererd, but no example of a protein known to have a different function.
Probab=26.89 E-value=3.8e+02 Score=23.82 Aligned_cols=35 Identities=11% Similarity=0.059 Sum_probs=26.2
Q ss_pred HHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCce
Q 029558 82 DKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFE 121 (191)
Q Consensus 82 ~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~ 121 (191)
=..+...+.++..- +.|.+...+.+.|+++|+.++
T Consensus 18 ~a~la~g~~~i~~~-----~~~~dv~~~~~~l~~lG~~i~ 52 (409)
T TIGR01356 18 LAALAEGETRVRNL-----LRSEDTLATLDALRALGAKIE 52 (409)
T ss_pred HHHhCCCCEEECCC-----CcCHHHHHHHHHHHHcCCEEE
Confidence 34456777777755 588899999999999987653
No 398
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=26.39 E-value=3.6e+02 Score=23.07 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=18.8
Q ss_pred cCCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEe
Q 029558 86 TGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETV 123 (191)
Q Consensus 86 ~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~v 123 (191)
....|+++++. .. ....+.+++.|.++..+
T Consensus 30 ~g~~v~f~~~~-----~~---~~~~~~i~~~g~~v~~~ 59 (279)
T TIGR03590 30 QGAEVAFACKP-----LP---GDLIDLLLSAGFPVYEL 59 (279)
T ss_pred CCCEEEEEeCC-----CC---HHHHHHHHHcCCeEEEe
Confidence 35678888773 22 34467778888775544
No 399
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=26.11 E-value=1.1e+02 Score=22.60 Aligned_cols=31 Identities=13% Similarity=-0.020 Sum_probs=21.0
Q ss_pred HHHHHHHHhhCCCCcccEEEECCEEEeechh
Q 029558 129 EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDI 159 (191)
Q Consensus 129 ~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~de 159 (191)
.++.+.|.+.-.--.-|.|+.+++.+-|+++
T Consensus 78 ~e~~~~l~~~p~LikRPIi~~~~~~~vGf~~ 108 (111)
T cd03036 78 EEALELLSSDGMLIKRPFVVDDDKVLVGFKE 108 (111)
T ss_pred HHHHHHHHhCcCeeeCCEEEeCCEEEEccCh
Confidence 3454555544334456999999998888887
No 400
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=25.84 E-value=3e+02 Score=20.98 Aligned_cols=86 Identities=16% Similarity=0.115 Sum_probs=49.7
Q ss_pred ChHHHHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcc-cEEEECCE
Q 029558 74 TPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTF-PQLYIEGE 152 (191)
Q Consensus 74 ~~~~~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tv-P~IfI~G~ 152 (191)
.+.+.+.++++....+.+.. -|. .-.+|.+.|+ .+-+.+..++...+.+++......- ..+++||+
T Consensus 78 ~~~l~~~l~~~~~~~~~i~~--------ic~----G~~~La~agl-L~g~~~T~~~~~~~~~~~~~~~~~~~~~~v~dg~ 144 (166)
T TIGR01382 78 NNKAVRLVREFVEKGKPVAA--------ICH----GPQLLISAGV-LRGKKLTSYPAIIDDVKNAGAEYVDIEVVVVDGN 144 (166)
T ss_pred CHHHHHHHHHHHHcCCEEEE--------ECh----HHHHHHhcCc-cCCCEEEcCccHHHHHHHCCCeEEcCCCEEEECC
Confidence 46678888888877775554 232 2356666665 1223344456666667665322222 36778888
Q ss_pred EEe--echhhHHHHHHHHhhcC
Q 029558 153 FFG--GCDITVGKLMDFLNLLN 172 (191)
Q Consensus 153 ~VG--G~del~~~lke~L~~lg 172 (191)
.+- |.....+...++++.|+
T Consensus 145 iiT~~~~~~~~~fa~~~~~~l~ 166 (166)
T TIGR01382 145 LVTSRVPDDLPAFNREFLKLLG 166 (166)
T ss_pred EEEeCCcccHHHHHHHHHHHhC
Confidence 873 44444455556666553
No 401
>PRK09301 circadian clock protein KaiB; Provisional
Probab=25.66 E-value=1.5e+02 Score=22.59 Aligned_cols=73 Identities=19% Similarity=0.239 Sum_probs=44.3
Q ss_pred CcEEEEEecCCCCCCChhHHHHHHHHHHc-----C--CCceEeecCCCHHHHHHHHhhCCCCcccEEEEC-----CEEEe
Q 029558 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSL-----N--APFETVNILENEMLRQGLKEYSSWPTFPQLYIE-----GEFFG 155 (191)
Q Consensus 88 ~kVVIYsk~~~~~p~Cp~C~kak~iL~~~-----g--V~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~-----G~~VG 155 (191)
....+|..| .-|-++++.+-|++. + ...+.+||.++|++.+.-+-. ..|.+.-- -+.||
T Consensus 7 ~~LrLyVag-----~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~Iv----ATPTLIK~~P~P~rriiG 77 (103)
T PRK09301 7 YILKLYVAG-----NTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKIL----ATPTLAKILPPPVRKIIG 77 (103)
T ss_pred EEEEEEEeC-----CCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeE----EecHHhhcCCCCcceeec
Confidence 356778886 677777665555443 1 345788999998875554333 45554332 25788
Q ss_pred echhhHHHHHHHHhhcCc
Q 029558 156 GCDITVGKLMDFLNLLNF 173 (191)
Q Consensus 156 G~del~~~lke~L~~lg~ 173 (191)
...+. +++|..|++
T Consensus 78 Dlsd~----~kVL~~L~l 91 (103)
T PRK09301 78 DLSDR----EKVLIGLDL 91 (103)
T ss_pred ccccH----HHHHHhcCC
Confidence 88773 344555554
No 402
>PRK13189 peroxiredoxin; Provisional
Probab=25.64 E-value=1.3e+02 Score=25.13 Aligned_cols=8 Identities=13% Similarity=-0.172 Sum_probs=5.0
Q ss_pred CChhHHHH
Q 029558 102 QCGFSHTV 109 (191)
Q Consensus 102 ~Cp~C~ka 109 (191)
+||.|..-
T Consensus 47 fcpvC~tE 54 (222)
T PRK13189 47 FTPVCTTE 54 (222)
T ss_pred CCCCCHHH
Confidence 67776653
No 403
>PRK05670 anthranilate synthase component II; Provisional
Probab=25.58 E-value=2.4e+02 Score=22.53 Aligned_cols=26 Identities=27% Similarity=0.170 Sum_probs=23.0
Q ss_pred CChhHHHHHHHHHHcCCCceEeecCC
Q 029558 102 QCGFSHTVVQILKSLNAPFETVNILE 127 (191)
Q Consensus 102 ~Cp~C~kak~iL~~~gV~y~~vdV~~ 127 (191)
+..|...+.++|.+.|++++.+..+.
T Consensus 8 ~d~f~~~i~~~l~~~g~~~~v~~~~~ 33 (189)
T PRK05670 8 YDSFTYNLVQYLGELGAEVVVYRNDE 33 (189)
T ss_pred CCchHHHHHHHHHHCCCcEEEEECCC
Confidence 68899999999999999998888764
No 404
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=25.56 E-value=57 Score=24.17 Aligned_cols=54 Identities=15% Similarity=0.116 Sum_probs=30.0
Q ss_pred HHHHHHHHHHcC---------CCceEeecCC-----CHHHHHHHHhhCCCCcccEEEECCEEEeechh
Q 029558 106 SHTVVQILKSLN---------APFETVNILE-----NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDI 159 (191)
Q Consensus 106 C~kak~iL~~~g---------V~y~~vdV~~-----d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~de 159 (191)
-.+...+|.+.| -.|...+.++ +.++.+.|.+.-.--.-|.|..+++.+-|+++
T Consensus 38 ~~eL~~~l~~~g~~~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~~p~LikRPIi~~~~~~~iGf~~ 105 (105)
T cd03035 38 AATLERWLAKVGWETLLNKRGTTWRKLDDAQKAALDAAKAIALMLEHPSLIKRPVLETGGKVLVGFSE 105 (105)
T ss_pred HHHHHHHHHHhChHHHHccCchHHHhCChhhhccCCHHHHHHHHHhCcCeeecceEEeCCEEEEeeCC
Confidence 355556665555 4455544431 23344444433333345999988888878764
No 405
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=25.25 E-value=1.5e+02 Score=22.60 Aligned_cols=85 Identities=16% Similarity=0.185 Sum_probs=47.9
Q ss_pred HHHHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHH-----------HHcCCCceEeecCC----CHHHHHHHHhhCC
Q 029558 76 ELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQIL-----------KSLNAPFETVNILE----NEMLRQGLKEYSS 140 (191)
Q Consensus 76 ~~~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL-----------~~~gV~y~~vdV~~----d~~~r~~Lk~~sg 140 (191)
...+.+++.--+..++-|.+.. |-=.+.+++| +..+..|...+.+. ++++.+.|.+.-.
T Consensus 16 ka~~~L~~~gi~~~~~~y~~~~------~s~~eL~~~l~~~g~~~~~li~t~~~~~r~L~~~~~~~~~~~~~~~i~~~~~ 89 (117)
T COG1393 16 KALAWLEEHGIEYTFIDYLKTP------PSREELKKILSKLGDGVEELINTRGTTYRELNLDKEDLSDEELIEALLENPS 89 (117)
T ss_pred HHHHHHHHcCCCcEEEEeecCC------CCHHHHHHHHHHcCccHHHHHHhccchHHHcCCcccccChHHHHHHHHhChh
Confidence 3455666666666777787742 2223444444 44455566666442 3455555544333
Q ss_pred CCcccEEEECCEEEeechhhHHHHHHHH
Q 029558 141 WPTFPQLYIEGEFFGGCDITVGKLMDFL 168 (191)
Q Consensus 141 ~~tvP~IfI~G~~VGG~del~~~lke~L 168 (191)
--.-|.|+-+|...-|+.+ +.+++++
T Consensus 90 LikRPivv~~~~~~iG~~~--e~~~~~l 115 (117)
T COG1393 90 LIKRPIVVDNKKLRVGFNE--EEIRAFL 115 (117)
T ss_pred hccCCeEEeCCceEecCCH--HHHHHHh
Confidence 3345999988876667776 4444443
No 406
>PRK07539 NADH dehydrogenase subunit E; Validated
Probab=25.21 E-value=90 Score=24.72 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=23.2
Q ss_pred CCcccEEEECCEEEeechhhHHHHHHHHhhc
Q 029558 141 WPTFPQLYIEGEFFGGCDITVGKLMDFLNLL 171 (191)
Q Consensus 141 ~~tvP~IfI~G~~VGG~del~~~lke~L~~l 171 (191)
...=|.+.|||+.+|+.+. +.+.++++.+
T Consensus 125 C~~gPvv~V~~~~y~~vt~--e~v~~il~~~ 153 (154)
T PRK07539 125 CDNAPVVMINDDTYEDLTP--EKIDELLDEL 153 (154)
T ss_pred cCCCCEEEECCEEeCCCCH--HHHHHHHHhc
Confidence 3456999999999999887 7777777764
No 407
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=24.98 E-value=3.1e+02 Score=20.84 Aligned_cols=13 Identities=23% Similarity=0.230 Sum_probs=6.6
Q ss_pred echhhHHHHHHHH
Q 029558 156 GCDITVGKLMDFL 168 (191)
Q Consensus 156 G~del~~~lke~L 168 (191)
|.+++.+.+++++
T Consensus 82 ~~~~L~~~l~~~~ 94 (157)
T cd01858 82 GKGSLIQLLRQFS 94 (157)
T ss_pred cHHHHHHHHHHHH
Confidence 4555555555444
No 408
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=24.69 E-value=3.8e+02 Score=21.73 Aligned_cols=74 Identities=16% Similarity=0.262 Sum_probs=41.1
Q ss_pred hcChHHHHHHHHhhcCC-cEEEEEecCCCCCCChhHHHHHHHHHHcCCC------------ceEeecCCCH--HHHHHHH
Q 029558 72 ALTPELKSTLDKVVTGN-KVVLFMKGTKDFPQCGFSHTVVQILKSLNAP------------FETVNILENE--MLRQGLK 136 (191)
Q Consensus 72 ~~~~~~~~~l~~~i~~~-kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~------------y~~vdV~~d~--~~r~~Lk 136 (191)
.+-+++...++++...+ ++.+=+. +..=.-|+++|+.++++ |...+|-... .-.+.|+
T Consensus 45 ~lypdv~~iL~~L~~~gv~lavASR-------t~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~gsK~~Hf~~i~ 117 (169)
T PF12689_consen 45 SLYPDVPEILQELKERGVKLAVASR-------TDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPGSKTTHFRRIH 117 (169)
T ss_dssp ---TTHHHHHHHHHHCT--EEEEE---------S-HHHHHHHHHHTT-C----------CCECEEEESSS-HHHHHHHHH
T ss_pred EeCcCHHHHHHHHHHCCCEEEEEEC-------CCChHHHHHHHHhcCCCccccccccchhhcchhheecCchHHHHHHHH
Confidence 45567777777777644 3444443 33338999999999887 3445554432 3345566
Q ss_pred hhCCCCcccEEEECCE
Q 029558 137 EYSSWPTFPQLYIEGE 152 (191)
Q Consensus 137 ~~sg~~tvP~IfI~G~ 152 (191)
+.+|.+-==.+|+|++
T Consensus 118 ~~tgI~y~eMlFFDDe 133 (169)
T PF12689_consen 118 RKTGIPYEEMLFFDDE 133 (169)
T ss_dssp HHH---GGGEEEEES-
T ss_pred HhcCCChhHEEEecCc
Confidence 7777766668888885
No 409
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=24.65 E-value=1.6e+02 Score=22.16 Aligned_cols=38 Identities=11% Similarity=0.056 Sum_probs=23.1
Q ss_pred HHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHHHHH
Q 029558 129 EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLMDFL 168 (191)
Q Consensus 129 ~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lke~L 168 (191)
.++.+.|.+.-.--.-|.|.-+|+.+-|+++ +.++++|
T Consensus 75 ~e~~~ll~~~P~LikRPIv~~~~~~~vG~~~--e~~~~~l 112 (113)
T cd03033 75 EEALALMIADPLLIRRPLMQVGDRRMVGFDT--ARVDAWI 112 (113)
T ss_pred HHHHHHHHhCcceeeCCeEEECCEEEecCCH--HHHHHHh
Confidence 3444444433233345999989998888988 5554443
No 410
>PRK06606 branched-chain amino acid aminotransferase; Validated
Probab=24.59 E-value=2.2e+02 Score=24.76 Aligned_cols=47 Identities=21% Similarity=0.218 Sum_probs=30.2
Q ss_pred HHHHHHHHcCCCceEeecCCCHHHHHHHHhh--CC--CCcccEEEECCEEEee
Q 029558 108 TVVQILKSLNAPFETVNILENEMLRQGLKEY--SS--WPTFPQLYIEGEFFGG 156 (191)
Q Consensus 108 kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~--sg--~~tvP~IfI~G~~VGG 156 (191)
.+.++++++|++.++..+.-+ ++ ....+. ++ ..-+|+.-|||..+|.
T Consensus 224 ~vl~~~~~~g~~v~e~~i~~~-eL-~~AdevfltnS~~gi~PV~~id~~~~~~ 274 (306)
T PRK06606 224 TVITLAKDLGIEVIERRITRD-EL-YIADEVFFTGTAAEVTPIREVDGRQIGN 274 (306)
T ss_pred HHHHHHHHcCCcEEEEeCCHH-HH-hhCCEEEEcCCcceEEEEEEECcEECCC
Confidence 556788889999888877431 12 111121 22 3456999999998864
No 411
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=24.50 E-value=1.6e+02 Score=26.30 Aligned_cols=82 Identities=15% Similarity=0.144 Sum_probs=54.3
Q ss_pred HHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEE---CC-EEEeechhhHHHHHHHHhhcCcCCcceEEee
Q 029558 107 HTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYI---EG-EFFGGCDITVGKLMDFLNLLNFSSTIWLVVC 182 (191)
Q Consensus 107 ~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI---~G-~~VGG~del~~~lke~L~~lg~~~~~wl~~~ 182 (191)
+...+.-++.+...=-+|+...+.++..|..- ....-|+|.= ++ +++||++.+....+.+.+..+++=+++|.=|
T Consensus 7 ~~ll~~Ake~~yAvpAfN~~nlE~~~AileaA-~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~lHlDHg 85 (286)
T COG0191 7 KELLDKAKENGYAVPAFNINNLETLQAILEAA-EEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPVALHLDHG 85 (286)
T ss_pred HHHHHHHHHcCCceeeeeecCHHHHHHHHHHH-HHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 33444445566665566665544444433321 2223454433 33 5788899999999999999999999999999
Q ss_pred CCccccc
Q 029558 183 DLYAFCS 189 (191)
Q Consensus 183 ~~~~~~~ 189 (191)
+.+.-|.
T Consensus 86 ~~~~~~~ 92 (286)
T COG0191 86 ASFEDCK 92 (286)
T ss_pred CCHHHHH
Confidence 8887763
No 412
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=24.25 E-value=2.9e+02 Score=21.49 Aligned_cols=55 Identities=15% Similarity=0.098 Sum_probs=26.5
Q ss_pred CCcEEEEEecCCCCCCChhHHHH--------HHHHHHcCCC-ceEeecCCCHHHHHHHHhhCCC-Cccc
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTV--------VQILKSLNAP-FETVNILENEMLRQGLKEYSSW-PTFP 145 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~ka--------k~iL~~~gV~-y~~vdV~~d~~~r~~Lk~~sg~-~tvP 145 (191)
.++++||..- . -+||.|..- .+-|++.|+. .--+..+. +...+.+.+..+. ..+|
T Consensus 29 gk~vvl~fyP--~-~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~-~~~~~~~~~~~~~~~~f~ 93 (155)
T cd03013 29 GKKVVIFGVP--G-AFTPTCSAQHLPGYVENADELKAKGVDEVICVSVND-PFVMKAWGKALGAKDKIR 93 (155)
T ss_pred CCcEEEEEeC--C-CCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCC-HHHHHHHHHhhCCCCcEE
Confidence 3455555431 1 379999765 3444445553 44444444 3334444443333 2344
No 413
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=24.21 E-value=2.1e+02 Score=19.49 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=27.0
Q ss_pred HHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHcCCC
Q 029558 78 KSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAP 119 (191)
Q Consensus 78 ~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~ 119 (191)
.+.+..+-+..+|++|-. .+..+..+...|.+.|.+
T Consensus 47 ~~~~~~~~~~~~ivv~c~------~g~~s~~a~~~l~~~G~~ 82 (96)
T cd01444 47 DDWLGDLDRDRPVVVYCY------HGNSSAQLAQALREAGFT 82 (96)
T ss_pred HHHHhhcCCCCCEEEEeC------CCChHHHHHHHHHHcCCc
Confidence 334444456778999976 677888999999999875
No 414
>cd00555 Maf Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or nucleic acid-binding protein with structural similarity to the hypoxanthine/xanthine NTP pyrophosphatase Ham1 from Methanococcus jannaschii, RNase H from Escherichia coli, and some other nucleotide or RNA-binding proteins.
Probab=24.05 E-value=4e+02 Score=21.68 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=15.7
Q ss_pred HHHHHHHHHcCCCceEe--ecCC
Q 029558 107 HTVVQILKSLNAPFETV--NILE 127 (191)
Q Consensus 107 ~kak~iL~~~gV~y~~v--dV~~ 127 (191)
.+=+++|+++|++|+.+ |+|+
T Consensus 8 prR~elL~~~g~~f~~~~~~iDE 30 (180)
T cd00555 8 PRRRELLEQLGIPFEVVPSDIDE 30 (180)
T ss_pred HHHHHHHHhCCCCeEEEcCCCCC
Confidence 45578999999998776 4544
No 415
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=23.97 E-value=1.6e+02 Score=23.64 Aligned_cols=35 Identities=9% Similarity=0.117 Sum_probs=17.7
Q ss_pred ChHHHHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHcCC
Q 029558 74 TPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNA 118 (191)
Q Consensus 74 ~~~~~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV 118 (191)
-+.+.+.++.+ ..++.|.+.+ + =..+...|+..++
T Consensus 90 ~~gv~~~L~~L--~~~~~ivTn~-------~-~~~~~~~l~~~~l 124 (221)
T PRK10563 90 IAGANALLESI--TVPMCVVSNG-------P-VSKMQHSLGKTGM 124 (221)
T ss_pred CCCHHHHHHHc--CCCEEEEeCC-------c-HHHHHHHHHhcCh
Confidence 34455555555 2566665442 1 1234555666665
No 416
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=23.94 E-value=2.1e+02 Score=21.34 Aligned_cols=27 Identities=30% Similarity=0.238 Sum_probs=11.6
Q ss_pred chhhHHHHHHHHhhcCcCCcceEEeeCC
Q 029558 157 CDITVGKLMDFLNLLNFSSTIWLVVCDL 184 (191)
Q Consensus 157 ~del~~~lke~L~~lg~~~~~wl~~~~~ 184 (191)
.+++.+.+++.++.+. ....++..+|.
T Consensus 40 ~~~~~~~i~~~i~~~~-~~~~viil~Dl 66 (122)
T cd00006 40 PDDLLEKIKAALAELD-SGEGVLILTDL 66 (122)
T ss_pred HHHHHHHHHHHHHHhC-CCCcEEEEEeC
Confidence 3344444444444432 12345555554
No 417
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=23.92 E-value=5.1e+02 Score=22.87 Aligned_cols=76 Identities=13% Similarity=0.073 Sum_probs=44.8
Q ss_pred CcEEEEEecCCCCCCChhH-HHHHHHHHHcCCCceEe-ecCCCHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHH
Q 029558 88 NKVVLFMKGTKDFPQCGFS-HTVVQILKSLNAPFETV-NILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLM 165 (191)
Q Consensus 88 ~kVVIYsk~~~~~p~Cp~C-~kak~iL~~~gV~y~~v-dV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lk 165 (191)
.+.++|+. +|+-- ....+.|-+.|+.-..+ +-.++++....|+.. .+++-++|+.=..-- -.++.++++
T Consensus 5 GKna~vtg------gagGIGl~~sk~Ll~kgik~~~i~~~~En~~a~akL~ai--~p~~~v~F~~~DVt~-~~~~~~~f~ 75 (261)
T KOG4169|consen 5 GKNALVTG------GAGGIGLATSKALLEKGIKVLVIDDSEENPEAIAKLQAI--NPSVSVIFIKCDVTN-RGDLEAAFD 75 (261)
T ss_pred CceEEEec------CCchhhHHHHHHHHHcCchheeehhhhhCHHHHHHHhcc--CCCceEEEEEecccc-HHHHHHHHH
Confidence 56777777 34443 45555666667764443 344566666666654 555556666543222 456667777
Q ss_pred HHHhhcC
Q 029558 166 DFLNLLN 172 (191)
Q Consensus 166 e~L~~lg 172 (191)
+.++.+|
T Consensus 76 ki~~~fg 82 (261)
T KOG4169|consen 76 KILATFG 82 (261)
T ss_pred HHHHHhC
Confidence 7777776
No 418
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=23.91 E-value=1.4e+02 Score=21.66 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=18.6
Q ss_pred HHHHHhhCCCCcccEEEECCEEEeech
Q 029558 132 RQGLKEYSSWPTFPQLYIEGEFFGGCD 158 (191)
Q Consensus 132 r~~Lk~~sg~~tvP~IfI~G~~VGG~d 158 (191)
.+.+++......+|+..|+.+..|-.|
T Consensus 64 ~~~i~~~~~~~~ipv~~I~~~~Y~~md 90 (95)
T TIGR00853 64 LPDLKKETDKKGIPVEVINGAQYGKLT 90 (95)
T ss_pred HHHHHHHhhhcCCCEEEeChhhcccCC
Confidence 344555555667899999988776554
No 419
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=23.85 E-value=2.7e+02 Score=20.09 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=16.0
Q ss_pred HHHHHHHHcCCCceEeecCCCHHHHHHH
Q 029558 108 TVVQILKSLNAPFETVNILENEMLRQGL 135 (191)
Q Consensus 108 kak~iL~~~gV~y~~vdV~~d~~~r~~L 135 (191)
.+.++.+..+.++. +=+|.+..+.+.|
T Consensus 26 ~~~~f~~~~~~p~~-ly~D~~~~lY~~l 52 (115)
T PF13911_consen 26 GIEKFCELTGFPFP-LYVDPERKLYKAL 52 (115)
T ss_pred HHHHHHhccCCCCc-EEEeCcHHHHHHh
Confidence 36666666666666 4455555555554
No 420
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=23.68 E-value=1.7e+02 Score=21.65 Aligned_cols=31 Identities=13% Similarity=-0.045 Sum_probs=20.5
Q ss_pred HHHHHHHHhhCCCCcccEEEECCEEEeechh
Q 029558 129 EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDI 159 (191)
Q Consensus 129 ~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~de 159 (191)
++..+.|.+.-.--.-|.|+.+|+.+-|+.+
T Consensus 76 ~e~i~ll~~~P~LikRPIi~~~~~~~vG~~~ 106 (112)
T cd03034 76 EELIDAMAAHPILIERPIVVTGDGAVLGRPP 106 (112)
T ss_pred HHHHHHHHhCcCcccCCEEEECCEEEEcCCH
Confidence 3444445544344456999999988888866
No 421
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=23.61 E-value=1.3e+02 Score=26.71 Aligned_cols=64 Identities=14% Similarity=0.214 Sum_probs=41.6
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCC----CHH-HHHHHHhhCCCCcccEEEECC-EEEeechh
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE----NEM-LRQGLKEYSSWPTFPQLYIEG-EFFGGCDI 159 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~----d~~-~r~~Lk~~sg~~tvP~IfI~G-~~VGG~de 159 (191)
..++++.+.| .....+.++.+.|++.|++.+.+|+.. |.+ +.+.+++. =.+|.+.. ...||+..
T Consensus 201 G~di~iva~G----~~~~~a~eAa~~L~~~Gi~v~vi~~~~l~Pld~~~i~~~~~~~-----~~vv~vEe~~~~gGlg~ 270 (327)
T PRK09212 201 GSDVTIVTFS----IQVKLALEAAELLEKEGISVEVIDLRTLRPLDTETIIESVKKT-----NRLVVVEEGWPFAGVGA 270 (327)
T ss_pred CCCEEEEEcc----HHHHHHHHHHHHHHhcCCcEEEEEEecCCCCCHHHHHHHHHhC-----CeEEEEcCCCCCCCHHH
Confidence 3567777776 478889999999999999999888743 333 44444332 12444443 44577654
No 422
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=23.50 E-value=1.4e+02 Score=23.43 Aligned_cols=41 Identities=17% Similarity=0.170 Sum_probs=30.8
Q ss_pred HHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCce
Q 029558 80 TLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFE 121 (191)
Q Consensus 80 ~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~ 121 (191)
.++.... ..+.+++.||...++=+--.++.++|+++|+++.
T Consensus 22 l~~~~~~-~~~~v~SAGt~~~~g~~~~~~a~~vl~e~Gid~~ 62 (139)
T COG0394 22 LLRHLAP-DNVEVDSAGTGGHPGEPPDPRAVEVLAEHGIDIS 62 (139)
T ss_pred HHHHhcc-CCeEEECCccCCCCCCCCCHHHHHHHHHcCCCcC
Confidence 3344433 7899999998655566666889999999999865
No 423
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=23.10 E-value=2.8e+02 Score=19.67 Aligned_cols=64 Identities=13% Similarity=0.132 Sum_probs=39.6
Q ss_pred ChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHHHHHhhcCcCCcceEEee
Q 029558 103 CGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLMDFLNLLNFSSTIWLVVC 182 (191)
Q Consensus 103 Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lke~L~~lg~~~~~wl~~~ 182 (191)
-.....+.+.|.+.+.++..+|- +++..+.+.+. | ++.++ |...+ .+.|+.+++..+.++.++
T Consensus 7 g~~~~~i~~~L~~~~~~vvvid~--d~~~~~~~~~~-~---~~~i~------gd~~~-----~~~l~~a~i~~a~~vv~~ 69 (116)
T PF02254_consen 7 GRIGREIAEQLKEGGIDVVVIDR--DPERVEELREE-G---VEVIY------GDATD-----PEVLERAGIEKADAVVIL 69 (116)
T ss_dssp SHHHHHHHHHHHHTTSEEEEEES--SHHHHHHHHHT-T---SEEEE------S-TTS-----HHHHHHTTGGCESEEEEE
T ss_pred CHHHHHHHHHHHhCCCEEEEEEC--CcHHHHHHHhc-c---ccccc------ccchh-----hhHHhhcCccccCEEEEc
Confidence 36778888888886655655554 45555555544 2 34322 33333 577888888888887776
Q ss_pred C
Q 029558 183 D 183 (191)
Q Consensus 183 ~ 183 (191)
-
T Consensus 70 ~ 70 (116)
T PF02254_consen 70 T 70 (116)
T ss_dssp S
T ss_pred c
Confidence 3
No 424
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=23.07 E-value=3.7e+02 Score=21.03 Aligned_cols=87 Identities=20% Similarity=0.191 Sum_probs=45.8
Q ss_pred HHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecC--C----CHHHHHHHHhhCCCCcccEEEECC
Q 029558 78 KSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNIL--E----NEMLRQGLKEYSSWPTFPQLYIEG 151 (191)
Q Consensus 78 ~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~--~----d~~~r~~Lk~~sg~~tvP~IfI~G 151 (191)
+..+..++..+-.-++..+ -+-.-.++.+.-.+.+.+..-+... . -+++.+.|++. |... +.++++|
T Consensus 18 k~iv~~~l~~~GfeVi~LG-----~~v~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~-gl~~-~~vivGG 90 (134)
T TIGR01501 18 NKILDHAFTNAGFNVVNLG-----VLSPQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEA-GLEG-ILLYVGG 90 (134)
T ss_pred HHHHHHHHHHCCCEEEECC-----CCCCHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHC-CCCC-CEEEecC
Confidence 4555666666665555454 4444456666666666665433321 1 24455555553 4444 3477888
Q ss_pred EEE-eechhhHHHHHHHHhhcCc
Q 029558 152 EFF-GGCDITVGKLMDFLNLLNF 173 (191)
Q Consensus 152 ~~V-GG~del~~~lke~L~~lg~ 173 (191)
..+ +.-|. ....+.|+++|+
T Consensus 91 ~~vi~~~d~--~~~~~~l~~~Gv 111 (134)
T TIGR01501 91 NLVVGKQDF--PDVEKRFKEMGF 111 (134)
T ss_pred CcCcChhhh--HHHHHHHHHcCC
Confidence 643 43333 233455677775
No 425
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=22.92 E-value=1.6e+02 Score=26.73 Aligned_cols=66 Identities=14% Similarity=0.182 Sum_probs=43.9
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCC----CHH-HHHHHHhhCCCCcccEEEE-CCEEEeechhh
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE----NEM-LRQGLKEYSSWPTFPQLYI-EGEFFGGCDIT 160 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~----d~~-~r~~Lk~~sg~~tvP~IfI-~G~~VGG~del 160 (191)
..+++|.+.| .....+.++.+.|++.|++...+|+.. |.+ +.+.+++. . ..|.+ ++...||+-..
T Consensus 233 G~di~Iia~G----s~~~~aleAa~~L~~~Gi~v~vI~~~~l~Pld~e~i~~~~~~~---~--~IvvvEE~~~~GGlG~~ 303 (355)
T PTZ00182 233 GKDVTIVGYG----SQVHVALKAAEELAKEGISCEVIDLRSLRPWDRETIVKSVKKT---G--RCVIVHEAPPTCGIGAE 303 (355)
T ss_pred CCCEEEEEeC----HHHHHHHHHHHHHHhCCCcEEEEEEeeCCCCCHHHHHHHHhcC---C--EEEEEEeCCCCCCHHHH
Confidence 4677777776 478889999999999999998888753 333 34444322 1 23444 45566888663
Q ss_pred H
Q 029558 161 V 161 (191)
Q Consensus 161 ~ 161 (191)
+
T Consensus 304 V 304 (355)
T PTZ00182 304 I 304 (355)
T ss_pred H
Confidence 3
No 426
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=22.67 E-value=5.7e+02 Score=23.02 Aligned_cols=108 Identities=12% Similarity=0.254 Sum_probs=66.3
Q ss_pred hHHHHHHHHhhcCC-cEEEEEecCCCCCCChhHHHHHHHHHHcCCCc-eEe----ecCCC--HHHHHHHHhhCCCCcccE
Q 029558 75 PELKSTLDKVVTGN-KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPF-ETV----NILEN--EMLRQGLKEYSSWPTFPQ 146 (191)
Q Consensus 75 ~~~~~~l~~~i~~~-kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y-~~v----dV~~d--~~~r~~Lk~~sg~~tvP~ 146 (191)
+++...++.+..-. .|.+|.. .|.-=+.+.......|+.. .-+ |+-.+ ..+........+|+.|-.
T Consensus 63 ~~~~sDLe~l~~~t~~IR~Y~s------DCn~le~v~pAa~~~g~kv~lGiw~tdd~~~~~~~til~ay~~~~~~d~v~~ 136 (305)
T COG5309 63 DQVASDLELLASYTHSIRTYGS------DCNTLENVLPAAEASGFKVFLGIWPTDDIHDAVEKTILSAYLPYNGWDDVTT 136 (305)
T ss_pred HHHHhHHHHhccCCceEEEeec------cchhhhhhHHHHHhcCceEEEEEeeccchhhhHHHHHHHHHhccCCCCceEE
Confidence 45555566555444 7899985 7888888888888888552 111 22221 234444555668999999
Q ss_pred EEECCEEEeech----hhHHHHH---HHHhhcCcCC-----cceEEeeCCcccc
Q 029558 147 LYIEGEFFGGCD----ITVGKLM---DFLNLLNFSS-----TIWLVVCDLYAFC 188 (191)
Q Consensus 147 IfI~G~~VGG~d----el~~~lk---e~L~~lg~~~-----~~wl~~~~~~~~~ 188 (191)
|-|+.|.+-+-+ .|.+++. ..|++.|.+. .-|-.+=..-..|
T Consensus 137 v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~gpV~T~dsw~~~~~np~l~ 190 (305)
T COG5309 137 VTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDGPVTTVDSWNVVINNPELC 190 (305)
T ss_pred EEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCCceeecccceeeeCChHHh
Confidence 999999886644 4555543 6667666543 3455544433333
No 427
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=22.63 E-value=1.7e+02 Score=19.29 Aligned_cols=10 Identities=20% Similarity=0.415 Sum_probs=4.5
Q ss_pred cEEEECCEEE
Q 029558 145 PQLYIEGEFF 154 (191)
Q Consensus 145 P~IfI~G~~V 154 (191)
..+.+||+.+
T Consensus 32 vav~vNg~iv 41 (66)
T PRK05659 32 VAVEVNGEIV 41 (66)
T ss_pred EEEEECCeEe
Confidence 3444455444
No 428
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.60 E-value=4e+02 Score=24.17 Aligned_cols=75 Identities=17% Similarity=0.003 Sum_probs=49.6
Q ss_pred cEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEEC-CEEEeechhhHHHHHHH
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIE-GEFFGGCDITVGKLMDF 167 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~-G~~VGG~del~~~lke~ 167 (191)
.+.+|+.+...-.-|+.|..+.-+++=.+ .-..+++..++- .++....|.+..+ |+.|+|++++...+++.
T Consensus 3 ~L~~~~~~~glptid~~sL~~l~y~kl~~-~~l~v~~ssN~~-------~s~sg~LP~l~~~ng~~va~~~~iv~~L~k~ 74 (313)
T KOG3028|consen 3 ELHIWSGGYGLPTIDPDSLAALIYLKLAG-APLKVVVSSNPW-------RSPSGKLPYLITDNGTKVAGPVKIVQFLKKN 74 (313)
T ss_pred eEEEecCCCCCCCcChhHHHHHHHHHHhC-CCceeEeecCCC-------CCCCCCCCeEEecCCceeccHHHHHHHHHHh
Confidence 46777776444344999999998887776 222334433322 3445568999885 59999999988887764
Q ss_pred Hhhc
Q 029558 168 LNLL 171 (191)
Q Consensus 168 L~~l 171 (191)
=++.
T Consensus 75 ~~ky 78 (313)
T KOG3028|consen 75 TKKY 78 (313)
T ss_pred cccC
Confidence 4443
No 429
>PRK07053 glutamine amidotransferase; Provisional
Probab=22.56 E-value=1.1e+02 Score=25.78 Aligned_cols=89 Identities=12% Similarity=-0.032 Sum_probs=46.0
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCCCHHHHHHHHhhCCCCcccEEEECCEEEeechh----hHH
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILENEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDI----TVG 162 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~de----l~~ 162 (191)
+.+|.+.... .+...-.+.++|++.|++++.++...++.....+ .+ +=-++|-|-..+-+|+ ...
T Consensus 2 m~~ilviqh~-----~~e~~g~i~~~L~~~g~~~~v~~~~~~~~~~~~~---~~---~d~lii~Ggp~~~~d~~~~p~~~ 70 (234)
T PRK07053 2 MKTAVAIRHV-----AFEDLGSFEQVLGARGYRVRYVDVGVDDLETLDA---LE---PDLLVVLGGPIGVYDDELYPFLA 70 (234)
T ss_pred CceEEEEECC-----CCCCChHHHHHHHHCCCeEEEEecCCCccCCCCc---cC---CCEEEECCCCCCCCCCCcCCcHH
Confidence 3456666654 3444566899999999998888775432100111 11 1134554433333332 112
Q ss_pred HHHHHHhhcCcCCcceEEeeCCcc
Q 029558 163 KLMDFLNLLNFSSTIWLVVCDLYA 186 (191)
Q Consensus 163 ~lke~L~~lg~~~~~wl~~~~~~~ 186 (191)
...++++.+--...--|++|-|..
T Consensus 71 ~~~~~i~~~~~~~~PvlGIC~G~Q 94 (234)
T PRK07053 71 PEIALLRQRLAAGLPTLGICLGAQ 94 (234)
T ss_pred HHHHHHHHHHHCCCCEEEECccHH
Confidence 222333332222455899998864
No 430
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=22.47 E-value=1.7e+02 Score=22.19 Aligned_cols=62 Identities=19% Similarity=0.205 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCCCceEeec-CCC-HHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHHHHHh
Q 029558 107 HTVVQILKSLNAPFETVNI-LEN-EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLMDFLN 169 (191)
Q Consensus 107 ~kak~iL~~~gV~y~~vdV-~~d-~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lke~L~ 169 (191)
..+.++|++.|.+.....+ .++ .++++.+.+...... =.|..+|.-+|..|.+.+.++++.+
T Consensus 22 ~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~D-lvittGG~g~g~~D~t~~ai~~~g~ 85 (133)
T cd00758 22 PALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREAD-LVLTTGGTGVGRRDVTPEALAELGE 85 (133)
T ss_pred HHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCC-EEEECCCCCCCCCcchHHHHHHhcC
Confidence 5677889999987665543 333 556666765533211 2333477777888888887776653
No 431
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=22.43 E-value=3.3e+02 Score=20.19 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=29.8
Q ss_pred HHHHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHcC-CCceEe
Q 029558 76 ELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLN-APFETV 123 (191)
Q Consensus 76 ~~~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~g-V~y~~v 123 (191)
++++..+.+...+++.+++.| +.-+-+....-.|.+.+ ++...+
T Consensus 2 ~~~~~a~~~~~~~~i~~~G~G----~s~~~a~e~~~kl~e~~~i~~~~~ 46 (153)
T cd05009 2 DIKELAEKLKEAKSFYVLGRG----PNYGTALEGALKLKETSYIHAEAY 46 (153)
T ss_pred hHHHHHHHHhccCcEEEEcCC----CCHHHHHHHHHHHHHHHhhcceec
Confidence 345666777778999999887 56666777666666654 554433
No 432
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=22.40 E-value=1.9e+02 Score=21.22 Aligned_cols=64 Identities=17% Similarity=0.203 Sum_probs=38.6
Q ss_pred cEEEEEecCCCCCCChhHHHHHHHH----HHc---CCCceEeecCCCHHHHHHHHhhCCCCcccEEEEC-----CEEEee
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVVQIL----KSL---NAPFETVNILENEMLRQGLKEYSSWPTFPQLYIE-----GEFFGG 156 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak~iL----~~~---gV~y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~-----G~~VGG 156 (191)
...+|..| .-|-++++.+-| +++ ....+.+||.++|++.+.-+-. ..|.+.-. -+.||.
T Consensus 5 ~LrLyvag-----~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~Iv----ATPtLIK~~P~P~rriiGd 75 (87)
T TIGR02654 5 VLKLYVAG-----NTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKIL----ATPTLSKILPPPVRKIIGD 75 (87)
T ss_pred EEEEEEeC-----CCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEE----EecHHhhcCCCCcceeecc
Confidence 45677776 667777665544 433 1345788999998875554333 45554332 256788
Q ss_pred chhhH
Q 029558 157 CDITV 161 (191)
Q Consensus 157 ~del~ 161 (191)
.++..
T Consensus 76 ls~~~ 80 (87)
T TIGR02654 76 LSDRE 80 (87)
T ss_pred ccchH
Confidence 77643
No 433
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=22.24 E-value=4.8e+02 Score=22.00 Aligned_cols=90 Identities=13% Similarity=0.120 Sum_probs=49.4
Q ss_pred HHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCc----eEeecCCCHHHHHHHHhhCCCCcc-cEEEECCEE
Q 029558 79 STLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPF----ETVNILENEMLRQGLKEYSSWPTF-PQLYIEGEF 153 (191)
Q Consensus 79 ~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y----~~vdV~~d~~~r~~Lk~~sg~~tv-P~IfI~G~~ 153 (191)
......+....+++|.-+..+ +.-.. ..+.+.|.+.+.+. ...|.....+..+.+.++.....+ |.+.+.-..
T Consensus 71 ~~~~~~l~~aDvvl~VvD~~~-~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~ 148 (270)
T TIGR00436 71 KEARSAIGGVDLILFVVDSDQ-WNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALT 148 (270)
T ss_pred HHHHHHHhhCCEEEEEEECCC-CCchH-HHHHHHHHhcCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCC
Confidence 344556677888888765322 11112 56677777778774 234543333333333333322222 666675544
Q ss_pred EeechhhHHHHHHHHhh
Q 029558 154 FGGCDITVGKLMDFLNL 170 (191)
Q Consensus 154 VGG~del~~~lke~L~~ 170 (191)
=-|.+++.+.+.+.+..
T Consensus 149 g~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 149 GDNTSFLAAFIEVHLPE 165 (270)
T ss_pred CCCHHHHHHHHHHhCCC
Confidence 46888888887766644
No 434
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=21.99 E-value=2.1e+02 Score=20.22 Aligned_cols=42 Identities=21% Similarity=0.362 Sum_probs=27.0
Q ss_pred cEEEEEecCCCCCCChhHHHHH----HHHHHc---CCCceEeecCCCHHHHHHH
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVV----QILKSL---NAPFETVNILENEMLRQGL 135 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak----~iL~~~---gV~y~~vdV~~d~~~r~~L 135 (191)
...+|..| .-|-+.++. ++++++ ....+.+||.++|++.+.-
T Consensus 3 ~L~Lyv~g-----~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~ 51 (72)
T cd02978 3 VLRLYVAG-----RTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEED 51 (72)
T ss_pred EEEEEECC-----CCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhC
Confidence 35677775 556666554 455554 3346889999998876543
No 435
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=21.98 E-value=3.8e+02 Score=21.03 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=18.8
Q ss_pred cChHHHHHHHHhhcC-CcEEEEEecCCCCCCChhHHHHHHHHHHcCC
Q 029558 73 LTPELKSTLDKVVTG-NKVVLFMKGTKDFPQCGFSHTVVQILKSLNA 118 (191)
Q Consensus 73 ~~~~~~~~l~~~i~~-~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV 118 (191)
+-+.+.+.++.+.+. .++.|.+.+ .-..+..+|+..|+
T Consensus 86 ~~~g~~~~L~~l~~~g~~~~i~S~~--------~~~~~~~~l~~~~l 124 (213)
T TIGR01449 86 VFPGVEATLGALRAKGLRLGLVTNK--------PTPLARPLLELLGL 124 (213)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEeCC--------CHHHHHHHHHHcCc
Confidence 334555555555444 355555442 11344555666665
No 436
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=21.93 E-value=1.7e+02 Score=23.57 Aligned_cols=47 Identities=23% Similarity=0.338 Sum_probs=29.2
Q ss_pred cEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCC--CH-HHHHHHHhh
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE--NE-MLRQGLKEY 138 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~--d~-~~r~~Lk~~ 138 (191)
+|.|.+.++ ..=++++++...|+++|++|+..=+.- .+ .+.+.++++
T Consensus 2 ~V~Ii~gs~---SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~ 51 (150)
T PF00731_consen 2 KVAIIMGST---SDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEY 51 (150)
T ss_dssp EEEEEESSG---GGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHT
T ss_pred eEEEEeCCH---HHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHh
Confidence 455665543 246788999999999999997644432 33 345555554
No 437
>PRK00884 Maf-like protein; Reviewed
Probab=21.87 E-value=4.6e+02 Score=21.70 Aligned_cols=74 Identities=19% Similarity=0.171 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCCceEe--ecCCC------H-HHHHHH---H-----h-hC-----CCCcccEEEECCEEEeechhhHHH
Q 029558 107 HTVVQILKSLNAPFETV--NILEN------E-MLRQGL---K-----E-YS-----SWPTFPQLYIEGEFFGGCDITVGK 163 (191)
Q Consensus 107 ~kak~iL~~~gV~y~~v--dV~~d------~-~~r~~L---k-----~-~s-----g~~tvP~IfI~G~~VGG~del~~~ 163 (191)
.+=+++|+++|++|+.+ |++++ + +.-..+ | + +. +..| +|..||+.+|=.....++
T Consensus 11 prR~elL~~~g~~f~v~~~~idE~~~~~~~p~~~v~~lA~~KA~~v~~~~~~~~VI~aDT--vV~~~g~ilgKP~~~eeA 88 (194)
T PRK00884 11 PYRRALLEKLQLPFECAAPEVDETPRPGESPRQLVLRLAQEKAQSLASRYPDHLIIGSDQ--VCVLDGEITGKPLTEENA 88 (194)
T ss_pred HHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCCCCEEEEeCe--EEEECCEEecCCCCHHHH
Confidence 56678999999999865 45542 2 111111 1 1 10 1122 356688888866665566
Q ss_pred HHHHHhhcCcCCcceEEee
Q 029558 164 LMDFLNLLNFSSTIWLVVC 182 (191)
Q Consensus 164 lke~L~~lg~~~~~wl~~~ 182 (191)
.+-+...-|-.-..+-+||
T Consensus 89 ~~~L~~lsG~~h~V~Tgv~ 107 (194)
T PRK00884 89 RAQLRKASGNIVTFYTGLA 107 (194)
T ss_pred HHHHHHHCCCceEEEEEEE
Confidence 5554444555556666666
No 438
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=21.80 E-value=1.3e+02 Score=22.10 Aligned_cols=27 Identities=22% Similarity=0.166 Sum_probs=12.5
Q ss_pred hhhHHHHHHHHhhcCcCCcceEEeeCCc
Q 029558 158 DITVGKLMDFLNLLNFSSTIWLVVCDLY 185 (191)
Q Consensus 158 del~~~lke~L~~lg~~~~~wl~~~~~~ 185 (191)
+++.+.+++.++++. ....++..||.+
T Consensus 41 ~~~~~~l~~~i~~~~-~~~~vlil~Dl~ 67 (116)
T PF03610_consen 41 EDFEEKLEEAIEELD-EGDGVLILTDLG 67 (116)
T ss_dssp HHHHHHHHHHHHHCC-TTSEEEEEESST
T ss_pred HHHHHHHHHHHHhcc-CCCcEEEEeeCC
Confidence 333344444444432 244556666554
No 439
>PRK10853 putative reductase; Provisional
Probab=21.74 E-value=1.9e+02 Score=21.85 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=17.3
Q ss_pred cccEEEECC-EEEeechhhHHHHHHHHh
Q 029558 143 TFPQLYIEG-EFFGGCDITVGKLMDFLN 169 (191)
Q Consensus 143 tvP~IfI~G-~~VGG~del~~~lke~L~ 169 (191)
.-|.|..+| ..+-|+++ +.++++|.
T Consensus 91 kRPIv~~~~~~~~vGf~~--e~~~~~l~ 116 (118)
T PRK10853 91 KRPLLCAPGKPMLLGFSE--SSYQQFFH 116 (118)
T ss_pred eccEEEeCCCeEEEcCCH--HHHHHHHc
Confidence 349999865 67778887 55555553
No 440
>TIGR01958 nuoE_fam NADH-quinone oxidoreductase, E subunit. This model describes the E chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. This model does not identify proteins from chloroplast and cyanobacteria.
Probab=21.62 E-value=1.2e+02 Score=23.86 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=22.9
Q ss_pred CCcccEEEECCEEEeechhhHHHHHHHHhhc
Q 029558 141 WPTFPQLYIEGEFFGGCDITVGKLMDFLNLL 171 (191)
Q Consensus 141 ~~tvP~IfI~G~~VGG~del~~~lke~L~~l 171 (191)
...=|.+.|||+.+++.+. +.+.++++.+
T Consensus 119 C~~aP~v~V~~~~y~~vt~--e~v~~il~~~ 147 (148)
T TIGR01958 119 CGNAPVMMINDDYYEFLTP--EKLDELLERY 147 (148)
T ss_pred cCCCCEEEECCEEeCCCCH--HHHHHHHHhc
Confidence 3456999999999999887 7777777664
No 441
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=21.58 E-value=2.9e+02 Score=20.68 Aligned_cols=72 Identities=13% Similarity=0.137 Sum_probs=39.4
Q ss_pred hcChHHHHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCce-EeecCCCHHHHHHHHhhCCCCcccEEEEC
Q 029558 72 ALTPELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFE-TVNILENEMLRQGLKEYSSWPTFPQLYIE 150 (191)
Q Consensus 72 ~~~~~~~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~-~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~ 150 (191)
+....+++.++++-+. .+++...|.++. .-....+.+.++..+-. ...+.-||.+.+. .+-..+|.+.+-
T Consensus 8 MP~~~L~~l~~~a~~~-~~~~V~RG~~~g----~~~~t~~~~~~l~~~~~~~~~v~IdP~~F~~----y~I~~VPa~V~~ 78 (113)
T PF09673_consen 8 MPDASLRNLLKQAERA-GVVVVFRGFPDG----SFKPTAKAIQELLRKDDPCPGVQIDPRLFRQ----YNITAVPAFVVV 78 (113)
T ss_pred CCHHHHHHHHHHHHhC-CcEEEEECCCCC----CHHHHHHHHHHHhhccCCCcceeEChhHHhh----CCceEcCEEEEE
Confidence 5556677777777777 555555555543 22333333333322211 1345556776443 367799999874
Q ss_pred CE
Q 029558 151 GE 152 (191)
Q Consensus 151 G~ 152 (191)
..
T Consensus 79 ~~ 80 (113)
T PF09673_consen 79 KD 80 (113)
T ss_pred cC
Confidence 43
No 442
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=21.44 E-value=1.5e+02 Score=29.37 Aligned_cols=68 Identities=16% Similarity=0.189 Sum_probs=39.8
Q ss_pred HHHHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHH-------HHHHcCCCceEeecCC--CHH----HHHHHHhhCCCC
Q 029558 76 ELKSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQ-------ILKSLNAPFETVNILE--NEM----LRQGLKEYSSWP 142 (191)
Q Consensus 76 ~~~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~-------iL~~~gV~y~~vdV~~--d~~----~r~~Lk~~sg~~ 142 (191)
=-++..+++-++|+.++.+-+. ..|.+|..+.+ +=+.++-+|..++||. .|+ ....+...+|..
T Consensus 100 wgqeaf~kar~enkpifLsvgy---stchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~G 176 (786)
T KOG2244|consen 100 WGQEAFNKARAENKPIFLSVGY---STCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGG 176 (786)
T ss_pred chHHHHHHHHhcCCCEEEEccc---ccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCC
Confidence 3478888899999988877653 46888875432 1222334455556653 222 334455555655
Q ss_pred cccE
Q 029558 143 TFPQ 146 (191)
Q Consensus 143 tvP~ 146 (191)
.+|.
T Consensus 177 GWPm 180 (786)
T KOG2244|consen 177 GWPM 180 (786)
T ss_pred CCce
Confidence 5554
No 443
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=21.37 E-value=4.5e+02 Score=21.83 Aligned_cols=30 Identities=17% Similarity=0.177 Sum_probs=23.0
Q ss_pred cEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEee
Q 029558 89 KVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVN 124 (191)
Q Consensus 89 kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vd 124 (191)
+|.|.-. +++.+..+.+.|+.+|++...++
T Consensus 3 ~v~iid~------~~GN~~sl~~al~~~g~~v~vv~ 32 (210)
T CHL00188 3 KIGIIDY------SMGNLHSVSRAIQQAGQQPCIIN 32 (210)
T ss_pred EEEEEEc------CCccHHHHHHHHHHcCCcEEEEc
Confidence 4555544 67888999999999998776664
No 444
>PRK09266 hypothetical protein; Provisional
Probab=21.09 E-value=3.1e+02 Score=23.17 Aligned_cols=63 Identities=11% Similarity=-0.075 Sum_probs=37.8
Q ss_pred HHHHHHHHcCCCceEeecCCCH-HHHHHHH-hhCCCCcccEEEECCEEEeechhhHHHHHHHHhh
Q 029558 108 TVVQILKSLNAPFETVNILENE-MLRQGLK-EYSSWPTFPQLYIEGEFFGGCDITVGKLMDFLNL 170 (191)
Q Consensus 108 kak~iL~~~gV~y~~vdV~~d~-~~r~~Lk-~~sg~~tvP~IfI~G~~VGG~del~~~lke~L~~ 170 (191)
.+.++++++|++.++..+.-++ ...+++. --+-..-+|+.-|||..++...++.+.+++.+..
T Consensus 196 ~ll~~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i~~~~~~~~~~~~~~l~~~~~~ 260 (266)
T PRK09266 196 LLQRGLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAIDDVALPDSHALLELLRRAYEA 260 (266)
T ss_pred HHHHHHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEECCEECCCCchHHHHHHHHHHh
Confidence 4567778889998888875321 1112221 1123566899999998886224555555555543
No 445
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=21.03 E-value=4.6e+02 Score=22.54 Aligned_cols=89 Identities=12% Similarity=0.166 Sum_probs=49.5
Q ss_pred HHHHHHhhcCCcEEEEEecCCCCCCChhHHHHHHHHHHcCCC----ceEeecCCCHHHHHHHHhhCCCCcccEEEECCEE
Q 029558 78 KSTLDKVVTGNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAP----FETVNILENEMLRQGLKEYSSWPTFPQLYIEGEF 153 (191)
Q Consensus 78 ~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~----y~~vdV~~d~~~r~~Lk~~sg~~tvP~IfI~G~~ 153 (191)
...+.+.++...++++.-+.++ |.-..+....+++. +.+ +...|+.......+.+..+. ....|.+++....
T Consensus 15 ~~~l~~~l~~aDvIL~VvDar~-p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~~~~~~~~~~~~-~~~~~vi~vSa~~ 90 (287)
T PRK09563 15 RREIKENLKLVDVVIEVLDARI-PLSSENPMIDKIIG--NKPRLLILNKSDLADPEVTKKWIEYFE-EQGIKALAINAKK 90 (287)
T ss_pred HHHHHHHhhhCCEEEEEEECCC-CCCCCChhHHHHhC--CCCEEEEEEchhcCCHHHHHHHHHHHH-HcCCeEEEEECCC
Confidence 4557788888899999887543 22222344444443 334 23345532222222222221 1136778887766
Q ss_pred EeechhhHHHHHHHHhh
Q 029558 154 FGGCDITVGKLMDFLNL 170 (191)
Q Consensus 154 VGG~del~~~lke~L~~ 170 (191)
-.|.+++.+.+.+++..
T Consensus 91 ~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 91 GQGVKKILKAAKKLLKE 107 (287)
T ss_pred cccHHHHHHHHHHHHHH
Confidence 67888888887766543
No 446
>PF08874 DUF1835: Domain of unknown function (DUF1835); InterPro: IPR014973 This group of proteins are functionally uncharacterised.
Probab=20.68 E-value=3.1e+02 Score=20.21 Aligned_cols=43 Identities=14% Similarity=0.318 Sum_probs=29.9
Q ss_pred HHHHHHhhcCCcEEEEEecCCCCCCChhHH----HHHHHHHHcCCCceEeecC
Q 029558 78 KSTLDKVVTGNKVVLFMKGTKDFPQCGFSH----TVVQILKSLNAPFETVNIL 126 (191)
Q Consensus 78 ~~~l~~~i~~~kVVIYsk~~~~~p~Cp~C~----kak~iL~~~gV~y~~vdV~ 126 (191)
.+.++++....+|+|... .+++++ .+..+|++...+...+++.
T Consensus 77 ~~~l~~l~~~~~I~iW~~------~~~~dq~gl~~~l~~L~~~~~~I~~v~~t 123 (124)
T PF08874_consen 77 LKRLEELPEDDPIVIWYG------DNAYDQLGLRYLLSLLKDKPNRIYVVNVT 123 (124)
T ss_pred HHHHHhCCCCCEEEEEeC------CCHHHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 344566667778888866 566664 6677778777777777765
No 447
>PLN02590 probable tyrosine decarboxylase
Probab=20.54 E-value=5.9e+02 Score=24.55 Aligned_cols=82 Identities=16% Similarity=0.099 Sum_probs=48.4
Q ss_pred CcEEEEEecCCCCCCChhHHHHHHHHHHcCC---CceEeecCC------C-HHHHHHHHhhCCCCcccEEEE---CCEEE
Q 029558 88 NKVVLFMKGTKDFPQCGFSHTVVQILKSLNA---PFETVNILE------N-EMLRQGLKEYSSWPTFPQLYI---EGEFF 154 (191)
Q Consensus 88 ~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV---~y~~vdV~~------d-~~~r~~Lk~~sg~~tvP~IfI---~G~~V 154 (191)
.++++|... ...+|. .+.+.-+|+ ....+.+++ + ..+++.+.+-......|.+++ +-...
T Consensus 228 ~~~vvy~S~-----~aH~Sv--~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~t 300 (539)
T PLN02590 228 PQLVVYGSD-----QTHSSF--RKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSS 300 (539)
T ss_pred CCEEEEecC-----CchHHH--HHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCC
Confidence 467888775 788873 334444455 245555542 2 355566655433445677666 44567
Q ss_pred eechhhHHHHHHHHhhcCcCCcceEEe
Q 029558 155 GGCDITVGKLMDFLNLLNFSSTIWLVV 181 (191)
Q Consensus 155 GG~del~~~lke~L~~lg~~~~~wl~~ 181 (191)
|.+|++. .+.++.++-| +||-|
T Consensus 301 GaiDpl~-~Ia~i~~~~g----~WlHV 322 (539)
T PLN02590 301 AAVDPLV-PLGNIAKKYG----IWLHV 322 (539)
T ss_pred cccCCHH-HHHHHHHHhC----CeEEE
Confidence 8888864 4455666655 58865
No 448
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=20.51 E-value=2.9e+02 Score=27.79 Aligned_cols=65 Identities=17% Similarity=0.129 Sum_probs=43.9
Q ss_pred CCcEEEEEecCCCCCCChhHHHHHHHHHHcCCCceEeecCC----CHHHHHHHHhhCCCCcccEEEECCEEEeechh
Q 029558 87 GNKVVLFMKGTKDFPQCGFSHTVVQILKSLNAPFETVNILE----NEMLRQGLKEYSSWPTFPQLYIEGEFFGGCDI 159 (191)
Q Consensus 87 ~~kVVIYsk~~~~~p~Cp~C~kak~iL~~~gV~y~~vdV~~----d~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~de 159 (191)
..+|.|...| .....|.+|.+.|++.|+..+.+|+.. |.+...++.+.+ =-.|.+....+||+-.
T Consensus 567 G~dvtIia~G----~mv~~Al~AA~~L~~~GI~vtVIdlr~ikPLD~e~I~~~~~k~----~~vVTvEE~~~GG~Gs 635 (701)
T PLN02225 567 GQDVALLGYG----AMVQNCLHAHSLLSKLGLNVTVADARFCKPLDIKLVRDLCQNH----KFLITVEEGCVGGFGS 635 (701)
T ss_pred CCCEEEEecc----HHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCHHHHHHHHhhc----CeEEEEcCCCCCchHH
Confidence 4577777776 467889999999999999999999853 555444444332 2244454333588765
No 449
>PRK14367 Maf-like protein; Provisional
Probab=20.45 E-value=5.1e+02 Score=21.59 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=23.4
Q ss_pred EEECCEEEeechhhHHHHHHHHhhcCcCCcceEEeeC
Q 029558 147 LYIEGEFFGGCDITVGKLMDFLNLLNFSSTIWLVVCD 183 (191)
Q Consensus 147 IfI~G~~VGG~del~~~lke~L~~lg~~~~~wl~~~~ 183 (191)
|..||+.+|=..+..++.+-+-..-|-.-+.+-+||-
T Consensus 79 V~~dg~IlgKP~~~eeA~~~L~~lsG~~h~V~Tgv~l 115 (202)
T PRK14367 79 VVSDGIILGKPRSQAEAIEFLNRLSGKQHTVLTAVCI 115 (202)
T ss_pred EEECCEEecCCCCHHHHHHHHHHhCCCCeEEEEEEEE
Confidence 5568888886666556655444445555566667774
No 450
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=20.43 E-value=2.2e+02 Score=19.42 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=16.7
Q ss_pred CChhHH-HHHHHHHHcC-CCceEeec
Q 029558 102 QCGFSH-TVVQILKSLN-APFETVNI 125 (191)
Q Consensus 102 ~Cp~C~-kak~iL~~~g-V~y~~vdV 125 (191)
.|++|. ++.+.|++.+ +.-..+|+
T Consensus 12 tC~~C~~~V~~al~~v~gv~~v~v~l 37 (71)
T COG2608 12 TCGHCVKTVEKALEEVDGVASVDVDL 37 (71)
T ss_pred CcHHHHHHHHHHHhcCCCeeEEEEEc
Confidence 899995 6788888885 44444443
No 451
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=20.40 E-value=2.7e+02 Score=25.20 Aligned_cols=73 Identities=10% Similarity=0.005 Sum_probs=44.5
Q ss_pred HHHHHHHHH--HcCCCceEeecCCC----------------HHHHHHHHhhCCCCcccEEEECCEEEeechhhHHHHHHH
Q 029558 106 SHTVVQILK--SLNAPFETVNILEN----------------EMLRQGLKEYSSWPTFPQLYIEGEFFGGCDITVGKLMDF 167 (191)
Q Consensus 106 C~kak~iL~--~~gV~y~~vdV~~d----------------~~~r~~Lk~~sg~~tvP~IfI~G~~VGG~del~~~lke~ 167 (191)
-..+.+.+. ++|++.-.+++..+ .+..+.+++......+|.|+.+|-. ..+++.+.++..
T Consensus 186 V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvlsgG~--~~~~f~~~l~~A 263 (340)
T PRK12858 186 VIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFLSAGV--SPELFRRTLEFA 263 (340)
T ss_pred HHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEECCCC--CHHHHHHHHHHH
Confidence 456667777 59998766665432 3444667777777789999988742 334455555555
Q ss_pred HhhcCcCCcceEEeeCC
Q 029558 168 LNLLNFSSTIWLVVCDL 184 (191)
Q Consensus 168 L~~lg~~~~~wl~~~~~ 184 (191)
++. ++.|.+|+=|
T Consensus 264 ~~a----Ga~f~Gvl~G 276 (340)
T PRK12858 264 CEA----GADFSGVLCG 276 (340)
T ss_pred HHc----CCCccchhhh
Confidence 553 4444444433
No 452
>PRK07714 hypothetical protein; Provisional
Probab=20.29 E-value=3.5e+02 Score=19.66 Aligned_cols=16 Identities=13% Similarity=0.270 Sum_probs=8.2
Q ss_pred HHHHHHHHHcCCCceE
Q 029558 107 HTVVQILKSLNAPFET 122 (191)
Q Consensus 107 ~kak~iL~~~gV~y~~ 122 (191)
+++...-+.+++++.+
T Consensus 50 ~ki~~~~~~~~vp~~~ 65 (100)
T PRK07714 50 KKITDKCTYYNVPMRK 65 (100)
T ss_pred HHHHHHHHhcCCCEEE
Confidence 3444444555677643
No 453
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=20.27 E-value=2.4e+02 Score=22.82 Aligned_cols=26 Identities=15% Similarity=0.082 Sum_probs=22.3
Q ss_pred CChhHHHHHHHHHHcCCCceEeecCC
Q 029558 102 QCGFSHTVVQILKSLNAPFETVNILE 127 (191)
Q Consensus 102 ~Cp~C~kak~iL~~~gV~y~~vdV~~ 127 (191)
.|.+-..+.++|++.|++++.+.+..
T Consensus 12 ~~e~~~~~~~~l~~~g~~~~~~~~~~ 37 (200)
T PRK13527 12 VEEHIDALKRALDELGIDGEVVEVRR 37 (200)
T ss_pred cHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 78888899999999999888888764
No 454
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=20.27 E-value=4.8e+02 Score=21.26 Aligned_cols=22 Identities=18% Similarity=0.054 Sum_probs=11.4
Q ss_pred HHHHHHHhhcCcCCcceEEeeC
Q 029558 162 GKLMDFLNLLNFSSTIWLVVCD 183 (191)
Q Consensus 162 ~~lke~L~~lg~~~~~wl~~~~ 183 (191)
+.+...++.+|++...-+.+-|
T Consensus 155 ~~~~~~~~~l~~~p~~~l~IGD 176 (229)
T PRK13226 155 LPLLVAAERIGVAPTDCVYVGD 176 (229)
T ss_pred HHHHHHHHHhCCChhhEEEeCC
Confidence 4455555666655444444444
Done!