BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029559
(191 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LF5|A Chain A, Structure Of Human Nadh Cytochrome B5 Oxidoreductase
(Ncb5or) B5 Domain To 1.25a Resolution
pdb|3LF5|B Chain B, Structure Of Human Nadh Cytochrome B5 Oxidoreductase
(Ncb5or) B5 Domain To 1.25a Resolution
Length = 88
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 53/73 (72%)
Query: 112 ITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAWVN 171
+T +E+K+H + W ++G VYN+SPYM++HPGG D LM+A G D T LF++ H WVN
Sbjct: 8 VTEEELKKHNKKDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGSDGTELFDQVHRWVN 67
Query: 172 AEFLLEKCLVGTL 184
E +L++CLVG +
Sbjct: 68 YESMLKECLVGRM 80
>pdb|3KS0|A Chain A, Crystal Structure Of The Heme Domain Of Flavocytochrome B2
In Complex With Fab B2b4
pdb|3KS0|B Chain B, Crystal Structure Of The Heme Domain Of Flavocytochrome B2
In Complex With Fab B2b4
Length = 95
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 108 NKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYH 167
NK+ I+ EV +H W V+ G VY+L+ ++ HPGG D++ GKD TA+F H
Sbjct: 2 NKQKISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPLH 61
Query: 168 AW-VNAEFLLEKCLVGTLDDSRPRQ 191
A V +++ + +G L S P +
Sbjct: 62 APNVIDKYIAPEKKLGPLQGSMPPE 86
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZF|B Chain B, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZG|A Chain A, A198g:l230a Flavocytochrome B2 With Sulfite Bound
pdb|1SZG|B Chain B, A198g:l230a Flavocytochrome B2 With Sulfite Bound
Length = 511
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 108 NKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYH 167
NK+ I+ EV +H W V+ G VY+L+ ++ HPGG D++ GKD TA+F H
Sbjct: 7 NKQKISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPLH 66
Query: 168 AW-VNAEFLLEKCLVGTLDDSRPRQ 191
A V +++ + +G L S P +
Sbjct: 67 APNVIDKYIAPEKKLGPLQGSMPPE 91
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LDC|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
Length = 511
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 108 NKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYH 167
NK+ I+ EV +H W V+ G VY+L+ ++ HPGG D++ GKD TA+F H
Sbjct: 7 NKQKISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPLH 66
Query: 168 AW-VNAEFLLEKCLVGTLDDSRPRQ 191
A V +++ + +G L S P +
Sbjct: 67 APNVIDKYIAPEKKLGPLQGSMPPE 91
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
pdb|2OZ0|B Chain B, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
Length = 511
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 108 NKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYH 167
NK+ I+ EV +H W V+ G VY+L+ ++ HPGG D++ GKD TA+F H
Sbjct: 7 NKQKISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPLH 66
Query: 168 AW-VNAEFLLEKCLVGTLDDSRPRQ 191
A V +++ + +G L S P +
Sbjct: 67 APNVIDKYIAPEKKLGPLQGSMPPE 91
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1FCB|B Chain B, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 511
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 108 NKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYH 167
NK+ I+ EV +H W V+ G VY+L+ ++ HPGG D++ GKD TA+F H
Sbjct: 7 NKQKISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPLH 66
Query: 168 AW-VNAEFLLEKCLVGTLDDSRPRQ 191
A V +++ + +G L S P +
Sbjct: 67 APNVIDKYIAPEKKLGPLQGSMPPE 91
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
pdb|1LTD|B Chain B, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
Length = 506
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 108 NKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYH 167
NK+ I+ EV +H W V+ G VY+L+ ++ HPGG D++ GKD TA+F H
Sbjct: 2 NKQKISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPLH 61
Query: 168 AW-VNAEFLLEKCLVGTLDDSRPRQ 191
A V +++ + +G L S P +
Sbjct: 62 APNVIDKYIAPEKKLGPLQGSMPPE 86
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate
pdb|1SZE|B Chain B, L230a Mutant Flavocytochrome B2 With Benzoylformate
Length = 511
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 108 NKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYH 167
NK+ I+ EV +H W V+ G VY+L+ ++ HPGG D++ GKD TA+F H
Sbjct: 7 NKQKISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPLH 66
Query: 168 AW-VNAEFLLEKCLVGTLDDSRPRQ 191
A V +++ + +G L S P +
Sbjct: 67 APNVIDKYIAPEKKLGPLQGSMPPE 91
>pdb|1IB7|A Chain A, Solution Structure Of F35y Mutant Of Rat Ferro Cytochrome
B5, A Conformation, Ensemble Of 20 Structures
Length = 94
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 43/75 (57%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAW 169
+ T++E+++H+ S W +L +VY+L+ Y++ HPGG ++L + G D T F
Sbjct: 5 KYYTLEEIQKHKDSKSTWVILHHKVYDLTKYLEEHPGGEEVLREQAGGDATENFEDVGHS 64
Query: 170 VNAEFLLEKCLVGTL 184
+A L + ++G L
Sbjct: 65 TDARELSKTYIIGEL 79
>pdb|1I87|A Chain A, Solution Structure Of The Water-Soluble Fragment Of Rat
Hepatic Apocytochrome B5
pdb|1I8C|A Chain A, Solution Structure Of The Water-Soluble Fragment Of Rat
Hepatic Apocytochrome B5
pdb|1IET|A Chain A, Apocytochrome B5, Ph 6.2, 298 K, Nmr, Minimized Average
Structure
pdb|1IEU|A Chain A, Apocytochrome B5, Ph 6.2, 298 K, Nmr, 10 Structures
Length = 98
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 106 QSNK--RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALF 163
QS+K + T++E+++H+ S W +L +VY+L+ +++ HPGG ++L + G D T F
Sbjct: 3 QSDKDVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENF 62
Query: 164 NKYHAWVNAEFLLEKCLVGTL 184
+A L + ++G L
Sbjct: 63 EDVGHSTDARELSKTYIIGEL 83
>pdb|2I96|A Chain A, Solution Structure Of The Oxidized Microsomal Human
Cytochrome B5
Length = 108
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAW 169
+ T++E+++H S W +L +VY+L+ +++ HPGG ++L + G D T F
Sbjct: 10 KYYTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 69
Query: 170 VNAEFLLEKCLVGTLD-DSRPR 190
+A + + ++G L D RP+
Sbjct: 70 TDAREMSKTFIIGELHPDDRPK 91
>pdb|2M33|A Chain A, Solution Nmr Structure Of Full-length Oxidized Microsomal
Rabbit Cytochrome B5
Length = 104
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 103 LKGQSNK--RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCT 160
+ QS+K + T++E+K+H S W +L +VY+L+ +++ HPGG ++L + G D T
Sbjct: 1 MAAQSDKDVKYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDAT 60
Query: 161 ALFNKYHAWVNAEFLLEKCLVGTL 184
F +A L + ++G L
Sbjct: 61 ENFEDVGHSTDARELSKTFIIGEL 84
>pdb|1BFX|A Chain A, The Solution Nmr Structure Of The B Form Of Oxidized Rat
Microsomal Cytochrome B5, Minimized Average Structure
Length = 99
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 106 QSNK--RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALF 163
QS+K + T++E+++H+ S W +L +VY+L+ +++ HPGG ++L + G D T F
Sbjct: 4 QSDKDVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENF 63
Query: 164 NKYHAWVNAEFLLEKCLVGTL 184
+A L + ++G L
Sbjct: 64 EDVGHSTDARELSKTYIIGEL 84
>pdb|1CXY|A Chain A, Structure And Characterization Of Ectothiorhodospira
Vacuolata Cytochrome B558, A Prokaryotic Homologue Of
Cytochrome B5
Length = 90
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 106 QSNKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTAL--- 162
++ + T+++V +H S W + G+VY+L+PY+ HPG M++ G++ T
Sbjct: 4 EATLPVFTLEQVAEHHSPDDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQESTEAWET 63
Query: 163 --FNKYHAWVNAEFLLEKCLVGTLDD 186
+ + H+ + A LL++ L+GTL++
Sbjct: 64 KSYGEPHSSLAAR-LLQRYLIGTLEE 88
>pdb|2I89|A Chain A, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|B Chain B, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|C Chain C, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|D Chain D, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
Length = 93
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 103 LKGQSNKRLIT---MDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDC 159
+ GQ + +T ++EV +H + S W VL GRVY+L+ ++ HPGG ++L + G D
Sbjct: 1 MNGQGSDPAVTYYRLEEVAKHNTSESTWMVLHGRVYDLTRFLSEHPGGEEVLREQAGADA 60
Query: 160 TALFNKYHAWVNAEFLLEKCLVGTL--DDSRPR 190
T F +A + ++ +G + +D +P+
Sbjct: 61 TESFEDVGHSPDAREMSKQYYIGDVHPNDLKPK 93
>pdb|1AQA|A Chain A, Solution Structure Of Reduced Microsomal Rat Cytochrome
B5, Nmr, Minimized Average Structure
pdb|1MNY|A Chain A, Dimethyl Propionate Ester Heme-Containing Cytochrome B5
pdb|2AXX|A Chain A, The Solution Structure Of Oxidized Rat Microsomal
Cytochrome B5, Nmr, 21 Structures
Length = 94
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 43/75 (57%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAW 169
+ T++E+++H+ S W +L +VY+L+ +++ HPGG ++L + G D T F
Sbjct: 5 KYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 64
Query: 170 VNAEFLLEKCLVGTL 184
+A L + ++G L
Sbjct: 65 TDARELSKTYIIGEL 79
>pdb|1BLV|A Chain A, Solution Structure Of Oxidized Rat Microsomal Cytochrome
B5 In The Presence Of 2 M Guanidinium Chloride:
Monitoring The Early Steps In Protein Unfolding
pdb|1AW3|A Chain A, The Solution Nmr Structure Of Oxidized Rat Microsomal
Cytochrome B5, Minimized Average Structure
pdb|1AXX|A Chain A, The Solution Structure Of Oxidized Rat Microsomal
Cytochrome B5, Nmr, 19 Structures
pdb|1B5A|A Chain A, Rat Ferrocytochrome B5 A Conformation, Nmr, 1 Structure
pdb|1B5B|A Chain A, Rat Ferrocytochrome B5 B Conformation, Nmr, 1 Structure
Length = 94
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 43/75 (57%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAW 169
+ T++E+++H+ S W +L +VY+L+ +++ HPGG ++L + G D T F
Sbjct: 5 KYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 64
Query: 170 VNAEFLLEKCLVGTL 184
+A L + ++G L
Sbjct: 65 TDARELSKTYIIGEL 79
>pdb|1M20|A Chain A, Crystal Structure Of F35y Mutant Of Trypsin-Solubilized
Fragment Of Cytochrome B5
Length = 82
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 43/75 (57%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAW 169
+ T++E+++H + S W +L +VY+L+ Y++ HPGG ++L + G D T F
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKYLEEHPGGEEVLREQAGGDATENFEDVGHS 62
Query: 170 VNAEFLLEKCLVGTL 184
+A L + ++G L
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1DO9|A Chain A, Solution Structure Of Oxidized Microsomal Rabbit
Cytochrome B5. Factors Determining The Heterogeneous
Binding Of The Heme
Length = 94
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAW 169
+ T++E+K+H S W +L +VY+L+ +++ HPGG ++L + G D T F
Sbjct: 5 KYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 64
Query: 170 VNAEFLLEKCLVGTL 184
+A L + ++G L
Sbjct: 65 TDARELSKTFIIGEL 79
>pdb|1ES1|A Chain A, Crystal Structure Of Val61his Mutant Of
Trypsin-Solubilized Fragment Of Cytochrome B5
Length = 82
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 44/75 (58%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAW 169
+ T++E+++H + S W +L +VY+L+ +++ HPGG ++L + G D T F +
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDHGHS 62
Query: 170 VNAEFLLEKCLVGTL 184
+A L + ++G L
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1J0Q|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant V61h
Length = 82
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 44/75 (58%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAW 169
+ T++E+++H + S W +L +VY+L+ +++ HPGG ++L + G D T F +
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDHGHS 62
Query: 170 VNAEFLLEKCLVGTL 184
+A L + ++G L
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1HKO|A Chain A, Nmr Structure Of Bovine Cytochrome B5
Length = 104
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 43/75 (57%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAW 169
+ T++E+++H + S W +L +VY+L+ +++ HPGG ++L + G D T F
Sbjct: 9 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 68
Query: 170 VNAEFLLEKCLVGTL 184
+A L + ++G L
Sbjct: 69 TDARELSKTFIIGEL 83
>pdb|1CYO|A Chain A, Bovine Cytochrome B(5)
Length = 93
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 43/75 (57%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAW 169
+ T++E+++H + S W +L +VY+L+ +++ HPGG ++L + G D T F
Sbjct: 5 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 64
Query: 170 VNAEFLLEKCLVGTL 184
+A L + ++G L
Sbjct: 65 TDARELSKTFIIGEL 79
>pdb|1I5U|A Chain A, Solution Structure Of Cytochrome B5 Triple Mutant
(E48aE56AD60A)
Length = 82
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 43/75 (57%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAW 169
+ T++E+++H + S W +L +VY+L+ +++ HPGG ++L G D TA F
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLRAQAGGDATANFEAVGHS 62
Query: 170 VNAEFLLEKCLVGTL 184
+A L + ++G L
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1M2I|A Chain A, Crystal Structure Of E44aE56A MUTANT OF CYTOCHROME B5
Length = 82
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 43/75 (57%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAW 169
+ T++E+++H + S W +L +VY+L+ +++ HPGG +L + G D TA F
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEAVLREQAGGDATANFEDVGHS 62
Query: 170 VNAEFLLEKCLVGTL 184
+A L + ++G L
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1JEX|A Chain A, Solution Structure Of A67v Mutant Of Rat Ferro Cytochrome
B5
Length = 94
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 42/75 (56%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAW 169
+ T++E+++H+ S W +L +VY+L+ +++ HPGG ++L + G D T F
Sbjct: 5 KYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 64
Query: 170 VNAEFLLEKCLVGTL 184
+ L + ++G L
Sbjct: 65 TDVRELSKTYIIGEL 79
>pdb|3OZZ|B Chain B, Structure Of A Cytochrome B5 Core-Swap Mutant
Length = 82
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 44/75 (58%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAW 169
+ T++E+++H + S W ++ +VY+++ ++ HPGG ++L++ G D T F
Sbjct: 3 KYYTLEEIQKHNNAKSTWMIIHYKVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHS 62
Query: 170 VNAEFLLEKCLVGTL 184
+A +L+ ++G L
Sbjct: 63 PDAREMLKTFIIGEL 77
>pdb|1EHB|A Chain A, Crystal Structure Of Recombinant Trypsin-Solubilized
Fragment Of Cytochrome B5
pdb|1NX7|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5
Length = 82
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 43/75 (57%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAW 169
+ T++E+++H + S W +L +VY+L+ +++ HPGG ++L + G D T F
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 62
Query: 170 VNAEFLLEKCLVGTL 184
+A L + ++G L
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1M2M|A Chain A, Crystal Structure Of E44aE48AE56AD60A MUTANT OF Cytochrome
B5
Length = 82
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAW 169
+ T++E+++H + S W +L +VY+L+ +++ HPGG +L G D TA F
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEAVLRAQAGGDATANFEAVGHS 62
Query: 170 VNAEFLLEKCLVGTL 184
+A L + ++G L
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1AWP|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1AWP|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 92
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 105 GQSNKRLIT---MDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTA 161
GQ + +T ++EV + + W V+ GRVY+++ ++ HPGG ++L++ G D T
Sbjct: 2 GQGSDPAVTYYRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEELLLEQAGADATE 61
Query: 162 LFNKYHAWVNAEFLLEKCLVGTL--DDSRPR 190
F +A +L++ +G + +D +P+
Sbjct: 62 SFEDLGHSPDAREMLKQYYIGDVHPNDLKPK 92
>pdb|1F03|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant (E44a, E48a, E56a, D60a) And Its
Interaction With Cytochrome C
pdb|1F04|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant (E44a, E48a, E56a, D60a) And Its
Interaction With Cytochrome C
Length = 82
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAW 169
+ T++E+++H + S W +L +VY+L+ +++ HPGG +L G D TA F
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEAVLRAQAGGDATANFEAVGHS 62
Query: 170 VNAEFLLEKCLVGTL 184
+A L + ++G L
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1LR6|A Chain A, Crystal Structure Of V45y Mutant Of Cytochrome B5
Length = 82
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAW 169
+ T++E+++H + S W +L +VY+L+ +++ HPGG + L + G D T F
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEYLREQAGGDATENFEDVGHS 62
Query: 170 VNAEFLLEKCLVGTL 184
+A L + ++G L
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1SH4|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant V45h
Length = 82
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAW 169
+ T++E+++H + S W +L +VY+L+ +++ HPGG + L + G D T F
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEHLREQAGGDATENFEDVGHS 62
Query: 170 VNAEFLLEKCLVGTL 184
+A L + ++G L
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1LQX|A Chain A, Crystal Structure Of V45e Mutant Of Cytochrome B5
Length = 82
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAW 169
+ T++E+++H + S W +L +VY+L+ +++ HPGG + L + G D T F
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEELREQAGGDATENFEDVGHS 62
Query: 170 VNAEFLLEKCLVGTL 184
+A L + ++G L
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1U9U|A Chain A, Crystal Structure Of F58y Mutant Of Cytochrome B5
Length = 82
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 43/75 (57%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAW 169
+ T++E+++H + S W +L +VY+L+ +++ HPGG ++L + G D T +
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENYEDVGHS 62
Query: 170 VNAEFLLEKCLVGTL 184
+A L + ++G L
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|3NER|A Chain A, Structure Of Human Type B Cytochrome B5
pdb|3NER|B Chain B, Structure Of Human Type B Cytochrome B5
Length = 92
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 104 KGQSNKRLIT---MDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCT 160
KGQ + +T ++EV + S +W V+ GRVY+++ ++ HPGG ++L++ G D +
Sbjct: 1 KGQEVETSVTYYRLEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDAS 60
Query: 161 ALFNKYHAWVNAEFLLEKCLVGTLDDS 187
F +A +L++ +G + S
Sbjct: 61 ESFEDVGHSSDAREMLKQYYIGDIHPS 87
>pdb|1ICC|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|C Chain C, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|D Chain D, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 87
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 114 MDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAWVNAE 173
++EV + + W V+ GRVY+L+ ++ HPGG ++L + G D T F +A
Sbjct: 9 LEEVAKRNTSEETWMVIHGRVYDLTRFLSEHPGGEEVLREQAGADATESFEDVGHSPDAR 68
Query: 174 FLLEKCLVGTL--DDSRPR 190
+L++ +G + +D +P+
Sbjct: 69 EMLKQYYIGDVHPNDLKPK 87
>pdb|1EUE|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1EUE|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 86
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 40/71 (56%)
Query: 114 MDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAWVNAE 173
++EV + + W V+ GRVY+++ ++ HPGG ++L++ G D T F +A
Sbjct: 9 LEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEILLEQAGADATESFEDIGHSPDAR 68
Query: 174 FLLEKCLVGTL 184
+L++ +G +
Sbjct: 69 EMLKQYYIGDV 79
>pdb|1U9M|A Chain A, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|B Chain B, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|C Chain C, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|D Chain D, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|E Chain E, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|F Chain F, Crystal Structure Of F58w Mutant Of Cytochrome B5
Length = 82
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 43/75 (57%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAW 169
+ T++E+++H + S W +L +VY+L+ +++ HPGG ++L + G D T +
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENWEDVGHS 62
Query: 170 VNAEFLLEKCLVGTL 184
+A L + ++G L
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|3MUS|A Chain A, 2a Resolution Structure Of Rat Type B Cytochrome B5
pdb|3MUS|B Chain B, 2a Resolution Structure Of Rat Type B Cytochrome B5
Length = 87
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 114 MDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAWVNAE 173
++EV + + W V+ GRVY+++ ++ HPGG ++L++ G D T F +A
Sbjct: 9 LEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPDAR 68
Query: 174 FLLEKCLVGTL--DDSRP 189
+L++ +G + +D +P
Sbjct: 69 EMLKQYYIGDVHPNDLKP 86
>pdb|1B5M|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 84
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 114 MDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAWVNAE 173
++EV + + W V+ GRVY+++ ++ HPGG ++L++ G D T F +A
Sbjct: 7 LEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPDAR 66
Query: 174 FLLEKCLVGTL--DDSRP 189
+L++ +G + +D +P
Sbjct: 67 EMLKQYYIGDVHPNDLKP 84
>pdb|1LJ0|A Chain A, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|B Chain B, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|C Chain C, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|D Chain D, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5
Length = 92
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 105 GQSNKRLIT---MDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTA 161
GQ + +T ++EV + + W VL GRVY+L+ ++ HPGG ++L + G D T
Sbjct: 2 GQGSDPAVTYYRLEEVAKRNTSEETWMVLHGRVYDLTRFLSEHPGGEEVLREQAGADATE 61
Query: 162 LFNKYHAWVNAEFLLEKCLVGTL--DDSRPR 190
F +A + ++ +G + +D +P+
Sbjct: 62 SFEDVGHSPDAREMSKQYYIGDVHPNDLKPK 92
>pdb|1M59|A Chain A, Crystal Structure Of P40v Mutant Of Trypsin-Solubilized
Fragment Of Cytochrome B5
Length = 82
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 42/75 (56%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAW 169
+ T++E+++H + S W +L +VY+L+ +++ H GG ++L + G D T F
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHVGGEEVLREQAGGDATENFEDVGHS 62
Query: 170 VNAEFLLEKCLVGTL 184
+A L + ++G L
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|2IBJ|A Chain A, Structure Of House Fly Cytochrome B5
Length = 88
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 41/75 (54%)
Query: 110 RLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAW 169
+ T EV ++ ++ W ++ VY+++ ++ HPGG ++L++ GKD T F
Sbjct: 7 KYFTRAEVAKNNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDVGHS 66
Query: 170 VNAEFLLEKCLVGTL 184
+A ++++ VG L
Sbjct: 67 SDAREMMKQYKVGEL 81
>pdb|1X3X|A Chain A, Crystal Structure Of Cytochrome B5 From Ascaris Suum
pdb|1X3X|B Chain B, Crystal Structure Of Cytochrome B5 From Ascaris Suum
Length = 82
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 113 TMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAWVNA 172
T +EV +H ++ +W + G V++++ + K HPGG +L KA G+D T++ V A
Sbjct: 7 TKEEVAKHNTQNDLWIIYDGEVHDMTSFYKEHPGGKVILNKA-GQDATSVLKTLAPHVKA 65
Query: 173 EFLLEKCL 180
++ K L
Sbjct: 66 ADVVMKKL 73
>pdb|1MJ4|A Chain A, Crystal Structure Analysis Of The Cytochrome B5 Domain Of
Human Sulfite Oxidase
Length = 82
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 106 QSNKRLITMDEVKQHQS-EGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFN 164
Q + + T +EV H S E +W L V++++ ++ HPGG LM A G +
Sbjct: 1 QESTHIYTKEEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAGGPLEPFWA 60
Query: 165 KY--HAWVNAEFLLEKCLVGTL 184
Y H + LL + +G L
Sbjct: 61 LYAVHNQSHVRELLAQYKIGEL 82
>pdb|3HBQ|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant Cys 185 Ala
Length = 466
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 113 TMDEVKQHQS-EGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKY--HAW 169
T +EV +H+S E +W V++++ +++ HPGG D ++ A G + Y H
Sbjct: 8 TREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFWALYAVHGE 67
Query: 170 VNAEFLLEKCLVGTL 184
+ LL++ VG L
Sbjct: 68 PHVLELLQQYKVGEL 82
>pdb|3HBG|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant C185s
pdb|3HBP|A Chain A, The Crystal Structure Of C185s Mutant Of Recombinant
Sulfite Oxidase With Bound Substrate, Sulfite, At The
Active Site
Length = 466
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 113 TMDEVKQHQS-EGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKY--HAW 169
T +EV +H+S E +W V++++ +++ HPGG D ++ A G + Y H
Sbjct: 8 TREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFWALYAVHGE 67
Query: 170 VNAEFLLEKCLVGTL 184
+ LL++ VG L
Sbjct: 68 PHVLELLQQYKVGEL 82
>pdb|3HC2|A Chain A, Crystal Structure Of Chicken Sulfite Oxidase Mutant Tyr
322 Phe
Length = 466
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 113 TMDEVKQHQS-EGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKY--HAW 169
T +EV +H+S E +W V++++ +++ HPGG D ++ A G + Y H
Sbjct: 8 TREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFWALYAVHGE 67
Query: 170 VNAEFLLEKCLVGTL 184
+ LL++ VG L
Sbjct: 68 PHVLELLQQYKVGEL 82
>pdb|1SOX|A Chain A, Sulfite Oxidase From Chicken Liver
pdb|1SOX|B Chain B, Sulfite Oxidase From Chicken Liver
Length = 466
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 113 TMDEVKQHQS-EGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKY--HAW 169
T +EV +H+S E +W V++++ +++ HPGG D ++ A G + Y H
Sbjct: 8 TREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFWALYAVHGE 67
Query: 170 VNAEFLLEKCLVGTL 184
+ LL++ VG L
Sbjct: 68 PHVLELLQQYKVGEL 82
>pdb|3R18|A Chain A, Chicken Sulfite Oxidase Double Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 113 TMDEVKQHQS-EGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKY--HAW 169
T +EV +H+S E +W V++++ +++ HPGG D ++ A G + Y H
Sbjct: 8 TREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFWALYAVHGE 67
Query: 170 VNAEFLLEKCLVGTL 184
+ LL++ VG L
Sbjct: 68 PHVLELLQQYKVGEL 82
>pdb|3R19|A Chain A, Chicken Sulfite Oxidase Triple Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 113 TMDEVKQHQS-EGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKY--HAW 169
T +EV +H+S E +W V++++ +++ HPGG D ++ A G + Y H
Sbjct: 8 TREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFWALYAVHGE 67
Query: 170 VNAEFLLEKCLVGTL 184
+ LL++ VG L
Sbjct: 68 PHVLELLQQYKVGEL 82
>pdb|1QX6|A Chain A, Crystal Structure Of Sortase B Complexed With E-64
Length = 214
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 31/51 (60%)
Query: 88 VDWLRLTQTHPDLAGLKGQSNKRLITMDEVKQHQSEGSMWTVLKGRVYNLS 138
V W++L+ T + L+G++N + +D ++H+ +GS++ + + NL+
Sbjct: 42 VGWIKLSGTSLNYPVLQGKTNHDYLNLDFEREHRRKGSIFXDFRNELKNLN 92
>pdb|2KEO|A Chain A, Solution Nmr Structure Of Human Protein Hs00059,
Cytochrome-B5-Like Domain Of The Herc2 E3 Ligase.
Northeast Structural Genomics Consortium (Nesg) Target
Ht98a
Length = 112
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 21/30 (70%)
Query: 111 LITMDEVKQHQSEGSMWTVLKGRVYNLSPY 140
L+ + +++ H ++G WTV+ G+VY++ +
Sbjct: 25 LVRIADLENHNNDGGFWTVIDGKVYDIKDF 54
>pdb|1QWZ|A Chain A, Crystal Structure Of Sortase B From S. Aureus Complexed
With Mtset
pdb|1QXA|A Chain A, Crystal Structure Of Sortase B Complexed With Gly3
Length = 235
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 31/51 (60%)
Query: 88 VDWLRLTQTHPDLAGLKGQSNKRLITMDEVKQHQSEGSMWTVLKGRVYNLS 138
V W++L+ T + L+G++N + +D ++H+ +GS++ + + NL+
Sbjct: 63 VGWIKLSGTSLNYPVLQGKTNHDYLNLDFEREHRRKGSIFMDFRNELKNLN 113
>pdb|1NG5|A Chain A, 2.0 A Crystal Structure Of Staphylococcus Aureus Sortase B
pdb|1NG5|B Chain B, 2.0 A Crystal Structure Of Staphylococcus Aureus Sortase B
Length = 215
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 31/51 (60%)
Query: 88 VDWLRLTQTHPDLAGLKGQSNKRLITMDEVKQHQSEGSMWTVLKGRVYNLS 138
V W++L+ T + L+G++N + +D ++H+ +GS++ + + NL+
Sbjct: 43 VGWIKLSGTSLNYPVLQGKTNHDYLNLDFEREHRRKGSIFMDFRNELKNLN 93
>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights
Into Receptor Autoregulation
Length = 343
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Query: 123 EGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAWVNAEF-------L 175
EG+ V + R L PY F V ML + D A F + A + AEF L
Sbjct: 57 EGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQR-EAALMAEFDNPNIVKL 115
Query: 176 LEKCLVG 182
L C VG
Sbjct: 116 LGVCAVG 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,874,027
Number of Sequences: 62578
Number of extensions: 221096
Number of successful extensions: 360
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 297
Number of HSP's gapped (non-prelim): 66
length of query: 191
length of database: 14,973,337
effective HSP length: 93
effective length of query: 98
effective length of database: 9,153,583
effective search space: 897051134
effective search space used: 897051134
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)