Query 029559
Match_columns 191
No_of_seqs 210 out of 1257
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 14:51:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029559.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029559hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0536 Flavohemoprotein b5+b5 100.0 4.3E-38 9.3E-43 248.7 10.4 108 76-186 37-144 (145)
2 KOG0537 Cytochrome b5 [Energy 99.9 4.2E-27 9.1E-32 184.7 6.1 82 108-189 3-84 (124)
3 PF00173 Cyt-b5: Cytochrome b5 99.9 3.7E-23 8.1E-28 146.0 5.5 74 111-185 1-76 (76)
4 COG5274 CYB5 Cytochrome b invo 99.9 7.7E-22 1.7E-26 161.1 8.2 107 76-185 19-125 (164)
5 PLN02252 nitrate reductase [NA 99.8 1.8E-19 3.8E-24 178.4 6.8 118 71-189 466-596 (888)
6 PLN03199 delta6-acyl-lipid des 99.8 6E-19 1.3E-23 164.6 8.3 81 106-189 20-100 (485)
7 PLN03198 delta6-acyl-lipid des 99.8 4.1E-19 9E-24 167.4 6.5 80 108-189 102-181 (526)
8 KOG4232 Delta 6-fatty acid des 99.5 6.5E-15 1.4E-19 135.0 3.3 82 109-191 7-89 (430)
9 KOG4576 Sulfite oxidase, heme- 99.4 1.2E-13 2.6E-18 110.6 3.8 81 107-188 77-160 (167)
10 COG4892 Predicted heme/steroid 98.7 3.8E-08 8.3E-13 71.0 5.9 75 110-187 2-78 (81)
11 KOG1110 Putative steroid membr 97.6 0.00012 2.6E-09 61.2 5.4 57 108-166 54-114 (183)
12 KOG1108 Predicted heme/steroid 96.0 0.0057 1.2E-07 53.4 3.2 54 110-165 60-117 (281)
13 PF14901 Jiv90: Cleavage induc 84.1 0.58 1.3E-05 35.5 1.4 17 126-142 57-73 (94)
14 KOG0720 Molecular chaperone (D 58.3 5.1 0.00011 38.3 1.3 14 128-141 381-394 (490)
15 PF11698 V-ATPase_H_C: V-ATPas 56.4 1.1 2.4E-05 35.2 -2.9 31 134-164 65-95 (119)
16 cd00256 VATPase_H VATPase_H, r 37.8 6.8 0.00015 37.0 -1.3 40 123-164 366-405 (429)
17 KOG2759 Vacuolar H+-ATPase V1 37.2 12 0.00025 35.6 0.1 42 123-168 379-420 (442)
18 PHA02131 hypothetical protein 25.9 42 0.00092 23.5 1.3 21 118-138 22-44 (70)
19 PRK06549 acetyl-CoA carboxylas 25.4 43 0.00093 26.5 1.5 13 126-138 5-17 (130)
20 COG3424 BcsA Predicted naringe 25.4 24 0.00052 32.5 0.1 20 136-156 270-289 (356)
21 PF05521 Phage_H_T_join: Phage 24.0 69 0.0015 22.0 2.2 19 123-141 64-82 (95)
22 PF02797 Chal_sti_synt_C: Chal 22.4 29 0.00062 28.0 -0.0 15 140-154 62-76 (151)
23 TIGR02334 prpF probable AcnD-a 20.3 50 0.0011 31.0 1.1 14 2-15 78-91 (390)
No 1
>KOG0536 consensus Flavohemoprotein b5+b5R [Energy production and conversion]
Probab=100.00 E-value=4.3e-38 Score=248.71 Aligned_cols=108 Identities=52% Similarity=0.960 Sum_probs=103.2
Q ss_pred CccccccccccchHHhHhhcCCCcccCCCCCCCCcccCHHHHhhhcCCCCeEEEEcCeEeeccccccccccchhhhhhcc
Q 029559 76 RAKVPFEKGYSQVDWLRLTQTHPDLAGLKGQSNKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAV 155 (191)
Q Consensus 76 r~kv~l~pG~s~mdw~~L~~~~~~l~~~~~~~~~~~it~~Ev~~H~~~~d~WvvI~GkVYDVT~fl~~HPGG~~iL~~~a 155 (191)
|.|++|+||+++|||.+|+.+.+++.+.. ....+|.+||++|++.+||||+|+|+|||||+||++||||.+.|++++
T Consensus 37 R~K~~l~PG~s~mdW~rL~~s~~~lag~~---~~i~vt~~El~KH~~~dDcW~~i~G~VYnVt~Yl~fHPgG~d~lmk~a 113 (145)
T KOG0536|consen 37 RTKVALAPGHSQMDWSRLTASGKNLAGVE---SPIPVTAEELKKHNKKDDCWIAIRGKVYNVTAYLDFHPGGVDELMKHA 113 (145)
T ss_pred cceeecCCCcchhhHHHHhccCccccccc---CCCccCHHHHHhhCCccceEEEEcCEEEecccccccCCCCHHHHHHhc
Confidence 89999999999999999999999998774 345799999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHhcCChHHHHHHhhhCeeeeecC
Q 029559 156 GKDCTALFNKYHAWVNAEFLLEKCLVGTLDD 186 (191)
Q Consensus 156 GkDaT~~F~~~H~~~na~~lL~~~~VG~l~~ 186 (191)
|+|+|.+|++||.|+|.+.||+.|+||.|.+
T Consensus 114 GrD~T~~Fnk~H~WVN~e~LL~~c~VGvl~d 144 (145)
T KOG0536|consen 114 GRDATKLFNKYHAWVNYEELLKKCFVGVLVD 144 (145)
T ss_pred CcchHHHHHHHHHHhcHHHHHhhceeeeecc
Confidence 9999999999999999999999999999864
No 2
>KOG0537 consensus Cytochrome b5 [Energy production and conversion]
Probab=99.94 E-value=4.2e-27 Score=184.75 Aligned_cols=82 Identities=28% Similarity=0.617 Sum_probs=78.3
Q ss_pred CCcccCHHHHhhhcCCCCeEEEEcCeEeeccccccccccchhhhhhccCCchhHHHHhcCChHHHHHHhhhCeeeeecCC
Q 029559 108 NKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAWVNAEFLLEKCLVGTLDDS 187 (191)
Q Consensus 108 ~~~~it~~Ev~~H~~~~d~WvvI~GkVYDVT~fl~~HPGG~~iL~~~aGkDaT~~F~~~H~~~na~~lL~~~~VG~l~~~ 187 (191)
..++|+++||++||+.+||||+|+|+|||||+|+++||||.++|+.+||+|||..|....|+..|++||++|+||.+.+.
T Consensus 3 ~~k~~~~~EV~kHn~~~d~Wvii~gkVYDvT~Fl~eHPGG~~vLl~~AGkDaT~~F~~~gHS~~A~~ml~~y~ig~~~~~ 82 (124)
T KOG0537|consen 3 DLKYYTLSEVAKHNKKDDCWVIIHGKVYDVTSFLDEHPGGEDVLLEYAGKDATEAFEDVGHSKDAREMLEEYYIGEVPTT 82 (124)
T ss_pred ccccccHHHHHhhcCCCCeEEEECCEEEeccchhhhCCChHHHHHHHhchhhHHhccccCCcHHHHHHhhhcccccccCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CC
Q 029559 188 RP 189 (191)
Q Consensus 188 ~~ 189 (191)
++
T Consensus 83 ~~ 84 (124)
T KOG0537|consen 83 AR 84 (124)
T ss_pred Cc
Confidence 65
No 3
>PF00173 Cyt-b5: Cytochrome b5-like Heme/Steroid binding domain This prints entry is a subset of the Pfam entry; InterPro: IPR001199 Cytochromes b5 are ubiquitous electron transport proteins found in animals, plants and yeasts []. The microsomal and mitochondrial variants are membrane-bound, while those from erythrocytes and other animal tissues are water-soluble [, ]. The 3D structure of bovine cyt b5 is known, the fold belonging to the alpha+beta class, with 5 strands and 5 short helices forming a framework for supporting a central haem group []. The cytochrome b5 domain is similar to that of a number of oxidoreductases, such as plant and fungal nitrate reductases, sulphite oxidase, yeast flavocytochrome b2 (L-lactate dehydrogenase) and plant cyt b5/acyl lipid desaturase fusion protein.; GO: 0020037 heme binding; PDB: 2I96_A 3KS0_A 1KBI_B 1KBJ_B 1LTD_A 1SZG_B 1SZF_A 1LDC_B 2OZ0_B 1LCO_A ....
Probab=99.88 E-value=3.7e-23 Score=145.98 Aligned_cols=74 Identities=39% Similarity=0.766 Sum_probs=67.9
Q ss_pred ccCHHHHhhhcCCCCeEEEEcCeEeeccccccccccchhhhhhccCCchhHHH-HhcCChHHHHHHhhh-Ceeeeec
Q 029559 111 LITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALF-NKYHAWVNAEFLLEK-CLVGTLD 185 (191)
Q Consensus 111 ~it~~Ev~~H~~~~d~WvvI~GkVYDVT~fl~~HPGG~~iL~~~aGkDaT~~F-~~~H~~~na~~lL~~-~~VG~l~ 185 (191)
+||++||++|+.+++|||+|+|+|||||+|+..||||..+|..++|+|+|.+| ...|. ..++++|++ |+||+|+
T Consensus 1 ~~t~~el~~h~~~~~~~v~i~g~VYDvt~~~~~hpgg~~~~~~~aG~D~T~~f~~~~h~-~~~~~~l~~~~~vG~ld 76 (76)
T PF00173_consen 1 VYTWEELAKHNKKGDCWVIIDGKVYDVTDFLDRHPGGADILKKYAGRDATDAFEEAFHS-WWAEKCLEKYYKVGYLD 76 (76)
T ss_dssp EEEHHHHTTTEETTEEEEEETTEEEECTTTTTTSTTTSHHHHTTTTSBTHHHHHHHTHH-HHHHHHHHGCGEEEEE-
T ss_pred CCCHHHHhhhCCCCCEEEEECCEEcccccccccccchhHHHHHhccccccHHHhhccCc-HHHHHHccCCCEEEEeC
Confidence 48999999999999999999999999999999999999999999999999999 65666 678889998 9999984
No 4
>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism]
Probab=99.86 E-value=7.7e-22 Score=161.14 Aligned_cols=107 Identities=32% Similarity=0.554 Sum_probs=97.9
Q ss_pred CccccccccccchHHhHhhcCCCcccCCCCCCCCcccCHHHHhhhcCCCCeEEEEcCeEeeccccccccccchhhhhhcc
Q 029559 76 RAKVPFEKGYSQVDWLRLTQTHPDLAGLKGQSNKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAV 155 (191)
Q Consensus 76 r~kv~l~pG~s~mdw~~L~~~~~~l~~~~~~~~~~~it~~Ev~~H~~~~d~WvvI~GkVYDVT~fl~~HPGG~~iL~~~a 155 (191)
+.+..+.|++.+++|..+.....+|..-. ....++.+|+.+|++.++|||+|+|+|||||.|+++||||+++|+.++
T Consensus 19 ~~~~~~~~d~~~~~~~~~~~~~~di~~~~---~~~~~~~eev~~h~~~~d~~ivi~g~VyDvs~fl~~HPGGe~ii~~~~ 95 (164)
T COG5274 19 TNKLYAGKDHAALDWDSLVQEHADILNDE---SPKPITAEEVAKHNKSEDCWIVINGKVYDVSQFLDEHPGGEDIIKDTA 95 (164)
T ss_pred ceeeecCccHHHHhHHHhhcchhhhccCC---ccccccHHHHHHhcCccceEEEEcCEEEEhhhccccCCCcceeehhcc
Confidence 99999999999999999988877765443 346799999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHhcCChHHHHHHhhhCeeeeec
Q 029559 156 GKDCTALFNKYHAWVNAEFLLEKCLVGTLD 185 (191)
Q Consensus 156 GkDaT~~F~~~H~~~na~~lL~~~~VG~l~ 185 (191)
|+|+|..|+..|++..+.++|+.++|+.+.
T Consensus 96 g~Dat~~f~~~~~~~~~~~llk~~yv~~v~ 125 (164)
T COG5274 96 GKDATKAFNFLHHSHQIGNLLKDVYVDQVH 125 (164)
T ss_pred CchhhhhhcccccchhHHhhhhceeeeccc
Confidence 999999999998887778999999999774
No 5
>PLN02252 nitrate reductase [NADPH]
Probab=99.78 E-value=1.8e-19 Score=178.38 Aligned_cols=118 Identities=29% Similarity=0.532 Sum_probs=96.2
Q ss_pred CCCCCCccccccccccchHHhHhhcCCC-------cccC------CCCCCCCcccCHHHHhhhcCCCCeEEEEcCeEeec
Q 029559 71 RKPASRAKVPFEKGYSQVDWLRLTQTHP-------DLAG------LKGQSNKRLITMDEVKQHQSEGSMWTVLKGRVYNL 137 (191)
Q Consensus 71 ~~~~~r~kv~l~pG~s~mdw~~L~~~~~-------~l~~------~~~~~~~~~it~~Ev~~H~~~~d~WvvI~GkVYDV 137 (191)
.....|+.+|.+||.....||+-.+... .+.. ++.....+.|+++||++|+++++|||+|+|+||||
T Consensus 466 ~~~~~~f~hp~~~~~~~ggwm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ev~~h~~~~~~Wivi~g~VYDv 545 (888)
T PLN02252 466 GEIGLVFEHPTQPGNQSGGWMAKQKHLETASAAAPALKKSVSTPFMNTNTGSKQYTMSEVRKHNSEDSCWIVVHGHVYDC 545 (888)
T ss_pred CcceEEEeCCCCccCCCCCcchhhhhcccccccccccccccCCcccCCccccceeCHHHHHhhCcCCCeEEEECCEEEeC
Confidence 3456799999999999999986543322 1111 11111347899999999999999999999999999
Q ss_pred cccccccccchhhhhhccCCchhHHHHhcCChHHHHHHhhhCeeeeecCCCC
Q 029559 138 SPYMKFHPGGVDMLMKAVGKDCTALFNKYHAWVNAEFLLEKCLVGTLDDSRP 189 (191)
Q Consensus 138 T~fl~~HPGG~~iL~~~aGkDaT~~F~~~H~~~na~~lL~~~~VG~l~~~~~ 189 (191)
|+|+..||||.++|+.++|+|||++|+.+|+ ..|++||++|+||+|....+
T Consensus 546 T~fl~~HPGG~~~I~~~aG~DaT~~F~~~Hs-~~a~~~L~~~~IG~l~~~~~ 596 (888)
T PLN02252 546 TRFLKDHPGGADSILINAGTDCTEEFDAIHS-DKAKKMLEDYRIGELVTTGA 596 (888)
T ss_pred HHHHHHCCChHHHHHhhcCCCcHHHHhhhhh-HHHHHHHHhCcCCccccccc
Confidence 9999999999999999999999999999876 46789999999999976543
No 6
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=99.77 E-value=6e-19 Score=164.58 Aligned_cols=81 Identities=30% Similarity=0.584 Sum_probs=72.6
Q ss_pred CCCCcccCHHHHhhhcCCCCeEEEEcCeEeeccccccccccchhhhhhccCCchhHHHHhcCChHHHHHHhhhCeeeeec
Q 029559 106 QSNKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAWVNAEFLLEKCLVGTLD 185 (191)
Q Consensus 106 ~~~~~~it~~Ev~~H~~~~d~WvvI~GkVYDVT~fl~~HPGG~~iL~~~aGkDaT~~F~~~H~~~na~~lL~~~~VG~l~ 185 (191)
....+.+|++|+++|+++++|||+|+|+|||||+|+ .||||. +|+.++|+|+|++|+.+|+. .++++|++|+||++.
T Consensus 20 ~~~~~~~s~~ev~~h~~~~~~wi~i~g~vYDvt~f~-~HPGG~-~i~~~aG~DaT~~F~~~H~~-~~~~~l~~~~iG~l~ 96 (485)
T PLN03199 20 AEKPQKISWQEVKKHASPDDAWIIHQNKVYDVSNWH-DHPGGA-VIFTHAGDDMTDIFAAFHAP-GSQALMKKFYIGDLI 96 (485)
T ss_pred CccCCccCHHHHHhhCCCCCeEEEECCEEEcCCCcC-cCCCch-HHHhhCCCChhHHHHHhcCH-HHHHHHHhccccccc
Confidence 345678999999999999999999999999999997 899997 78899999999999999875 467899999999997
Q ss_pred CCCC
Q 029559 186 DSRP 189 (191)
Q Consensus 186 ~~~~ 189 (191)
++++
T Consensus 97 ~~~~ 100 (485)
T PLN03199 97 PEST 100 (485)
T ss_pred cccc
Confidence 6653
No 7
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=99.77 E-value=4.1e-19 Score=167.37 Aligned_cols=80 Identities=29% Similarity=0.584 Sum_probs=73.1
Q ss_pred CCcccCHHHHhhhcCCCCeEEEEcCeEeeccccccccccchhhhhhccCCchhHHHHhcCChHHHHHHhhhCeeeeecCC
Q 029559 108 NKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAWVNAEFLLEKCLVGTLDDS 187 (191)
Q Consensus 108 ~~~~it~~Ev~~H~~~~d~WvvI~GkVYDVT~fl~~HPGG~~iL~~~aGkDaT~~F~~~H~~~na~~lL~~~~VG~l~~~ 187 (191)
..+.+|++|+++|++++||||+|+|+|||||+|++.||||. +|+.++|+|+|++|+.+|+..+ .++|++|+||++++.
T Consensus 102 ~~~~~t~~ev~~H~~~~d~Wivi~gkVYDvT~fl~~HPGG~-~i~~~aG~DaT~~F~~~H~~~~-~~~l~~~~IG~l~~~ 179 (526)
T PLN03198 102 KSKSHLLSEVAAHNKPNDCWIVIKNKVYDVSDFAAEHPGGS-VISTYFGRDGTDAFSSFHAAST-WKILQDFYIGDVDNV 179 (526)
T ss_pred ccCcCCHHHHHhhCCCCCeEEEECCEEEecHHHHHhCCCch-HHHHhcCCcHhHHHHHhcCHHH-HHHHhhCcceecCCc
Confidence 35689999999999999999999999999999999999997 8889999999999999998654 578999999999876
Q ss_pred CC
Q 029559 188 RP 189 (191)
Q Consensus 188 ~~ 189 (191)
+|
T Consensus 180 ~~ 181 (526)
T PLN03198 180 EP 181 (526)
T ss_pred cc
Confidence 55
No 8
>KOG4232 consensus Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase [Lipid transport and metabolism]
Probab=99.51 E-value=6.5e-15 Score=135.03 Aligned_cols=82 Identities=28% Similarity=0.560 Sum_probs=75.0
Q ss_pred CcccCHHHHhhhcCCCCeEEEEcCeEeeccccccccccchhhhhhccCCchhHHHHhcCChHH-HHHHhhhCeeeeecCC
Q 029559 109 KRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAWVN-AEFLLEKCLVGTLDDS 187 (191)
Q Consensus 109 ~~~it~~Ev~~H~~~~d~WvvI~GkVYDVT~fl~~HPGG~~iL~~~aGkDaT~~F~~~H~~~n-a~~lL~~~~VG~l~~~ 187 (191)
.++++++++++|++.++.|++|+| |||||+|++.||||..+|..++|.|+|++|.++|.-.+ +...|+...+|...++
T Consensus 7 ~~~~~we~~~~~~~~~~~W~~id~-vYd~s~~~~~HPGG~~~I~~~~g~DaTdaF~AfH~~~~~~~~~l~~l~~~~~~pe 85 (430)
T KOG4232|consen 7 PTTFSWEGKRKHDKAEGLWLVIDG-VYDISDWIKRHPGGSRVIEHYAGQDATDAFEAFHPGTAFAYKHLKPLLIGELSPE 85 (430)
T ss_pred ceeeeccchhhccCCCceEEEeec-cccHHHHHHhCCCchhHHHHhcCCccchHHHHhCCChHHHHHHHHHHHcCCcCcc
Confidence 358999999999999999999999 99999999999999999999999999999999998754 6678888999999888
Q ss_pred CCCC
Q 029559 188 RPRQ 191 (191)
Q Consensus 188 ~~~~ 191 (191)
.|++
T Consensus 86 ~~~~ 89 (430)
T KOG4232|consen 86 IPSL 89 (430)
T ss_pred cccc
Confidence 7753
No 9
>KOG4576 consensus Sulfite oxidase, heme-binding component [Energy production and conversion]
Probab=99.41 E-value=1.2e-13 Score=110.60 Aligned_cols=81 Identities=27% Similarity=0.465 Sum_probs=67.2
Q ss_pred CCCcccCHHHHhhhcCCC-CeEEEEcCeEeeccccccccccchhhhhhccCC--chhHHHHhcCChHHHHHHhhhCeeee
Q 029559 107 SNKRLITMDEVKQHQSEG-SMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGK--DCTALFNKYHAWVNAEFLLEKCLVGT 183 (191)
Q Consensus 107 ~~~~~it~~Ev~~H~~~~-d~WvvI~GkVYDVT~fl~~HPGG~~iL~~~aGk--DaT~~F~~~H~~~na~~lL~~~~VG~ 183 (191)
..+++|+.+||.+|+++. +.||.+..-|||||+|++.||||.++|+ .||. |--.+....|....+.++|+.|+||.
T Consensus 77 E~l~iY~~EEV~~H~s~e~rIWVTyg~gVyDVTdFv~~HPGGdKill-AAG~a~dPFWalY~qHnt~eVlElLegyrIG~ 155 (167)
T KOG4576|consen 77 ESLHIYTKEEVSSHTSPETRIWVTYGSGVYDVTDFVDLHPGGDKILL-AAGGALDPFWALYAQHNTSEVLELLEGYRIGE 155 (167)
T ss_pred hhccchhHHHHHhcCCCccceEEEecCcceeHHHHHHhCCCcceeee-ecCCCcCcHHHHHHHhhHHHHHHHHhhccccc
Confidence 457899999999998764 7999999999999999999999977665 4554 44444555588888899999999999
Q ss_pred ecCCC
Q 029559 184 LDDSR 188 (191)
Q Consensus 184 l~~~~ 188 (191)
|.+..
T Consensus 156 L~~~d 160 (167)
T KOG4576|consen 156 LNPED 160 (167)
T ss_pred CChhh
Confidence 98753
No 10
>COG4892 Predicted heme/steroid binding protein [General function prediction only]
Probab=98.70 E-value=3.8e-08 Score=70.97 Aligned_cols=75 Identities=25% Similarity=0.381 Sum_probs=58.1
Q ss_pred cccCHHHHhhhcCC-CCeEEEEcCeEeeccccccccccchhhhhhccCCchhHHHHhcCChHHHHHHhhhC-eeeeecCC
Q 029559 110 RLITMDEVKQHQSE-GSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAWVNAEFLLEKC-LVGTLDDS 187 (191)
Q Consensus 110 ~~it~~Ev~~H~~~-~d~WvvI~GkVYDVT~fl~~HPGG~~iL~~~aGkDaT~~F~~~H~~~na~~lL~~~-~VG~l~~~ 187 (191)
+.||++|+.+.+.+ +..+|.++|.||||+.-.. .-+|...-+.-+|+|.++.|+.-|+.. .++|+.| +||.|..+
T Consensus 2 refTLEELs~ynG~nGpaYiA~~G~VYDvS~s~~-W~dGtHqglhsaG~DLs~~~~~~aphg--~eil~~~PvVG~L~k~ 78 (81)
T COG4892 2 REFTLEELSKYNGENGPAYIAVNGTVYDVSLSPS-WGDGTHQGLHSAGKDLSSEFNSCAPHG--MEILTSLPVVGALIKE 78 (81)
T ss_pred ceecHHHHHhhcCCCCCeEEEECCEEEeeccCcc-cCCCccccccccchhHHHHHhhcCCch--hHHHhcCchhheeecc
Confidence 67999999999876 4799999999999987543 334444445679999999999765542 4688887 88888654
No 11
>KOG1110 consensus Putative steroid membrane receptor Hpr6.6/25-Dx [General function prediction only]
Probab=97.59 E-value=0.00012 Score=61.16 Aligned_cols=57 Identities=25% Similarity=0.423 Sum_probs=45.9
Q ss_pred CCcccCHHHHhhhcCC---CCeEEEEcCeEeecccccc-ccccchhhhhhccCCchhHHHHhc
Q 029559 108 NKRLITMDEVKQHQSE---GSMWTVLKGRVYNLSPYMK-FHPGGVDMLMKAVGKDCTALFNKY 166 (191)
Q Consensus 108 ~~~~it~~Ev~~H~~~---~d~WvvI~GkVYDVT~fl~-~HPGG~~iL~~~aGkDaT~~F~~~ 166 (191)
..+.||.+||++.+.. ...++.|+|+|||||.=-. |-|||.-- .+||+||+......
T Consensus 54 ~~~dfT~eEL~~ydGs~~d~~Il~AI~G~VYDVT~Gr~FYGp~GpY~--~fAG~DASR~La~~ 114 (183)
T KOG1110|consen 54 KVRDFTVEELRQYDGSDPDKPILLAINGKVYDVTRGREFYGPGGPYS--LFAGKDASRGLAKM 114 (183)
T ss_pred cccccCHHHHHhcCCCCCCCceEEEecceEEEecCCccccCCCCCch--hhcccchHHHHHhc
Confidence 3457999999998754 3689999999999997554 77999644 48999999987763
No 12
>KOG1108 consensus Predicted heme/steroid binding protein [General function prediction only]
Probab=96.01 E-value=0.0057 Score=53.43 Aligned_cols=54 Identities=20% Similarity=0.369 Sum_probs=42.5
Q ss_pred cccCHHHHhhhcCCC---CeEEEEcCeEeecccccc-ccccchhhhhhccCCchhHHHHh
Q 029559 110 RLITMDEVKQHQSEG---SMWTVLKGRVYNLSPYMK-FHPGGVDMLMKAVGKDCTALFNK 165 (191)
Q Consensus 110 ~~it~~Ev~~H~~~~---d~WvvI~GkVYDVT~fl~-~HPGG~~iL~~~aGkDaT~~F~~ 165 (191)
+.||.+||++.+... ..++.|-|.||||+.=.. +-||+. --.+||+||+.+|-.
T Consensus 60 ~lFtpeeLa~fnGt~e~~piyLaiLGsVfdVs~gk~hYgsG~s--YnhFaGRDASrAFvs 117 (281)
T KOG1108|consen 60 ILFTPEELAKFNGTEEGRPIYLAILGSVFDVSRGKKHYGSGCS--YNHFAGRDASRAFVS 117 (281)
T ss_pred eeeCHHHHhhccCCCCCCceeeeeeceeeeccCCeeeeCCCCC--cccccccccchheec
Confidence 589999999998643 589999999999998542 345543 446999999999865
No 13
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=84.06 E-value=0.58 Score=35.50 Aligned_cols=17 Identities=18% Similarity=0.741 Sum_probs=13.9
Q ss_pred eEEEEcCeEeecccccc
Q 029559 126 MWTVLKGRVYNLSPYMK 142 (191)
Q Consensus 126 ~WvvI~GkVYDVT~fl~ 142 (191)
.++..+|+|||||++..
T Consensus 57 yy~c~~g~VyDiTeWA~ 73 (94)
T PF14901_consen 57 YYACMDGKVYDITEWAT 73 (94)
T ss_pred EEEEcCceEEehhhhhh
Confidence 44578999999999874
No 14
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=58.28 E-value=5.1 Score=38.30 Aligned_cols=14 Identities=21% Similarity=0.805 Sum_probs=12.5
Q ss_pred EEEcCeEeeccccc
Q 029559 128 TVLKGRVYNLSPYM 141 (191)
Q Consensus 128 vvI~GkVYDVT~fl 141 (191)
++.+|+|||||+|.
T Consensus 381 ~c~DgkVYDITeWA 394 (490)
T KOG0720|consen 381 ACMDGKVYDITEWA 394 (490)
T ss_pred eecCCceEeehhhh
Confidence 47799999999997
No 15
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=56.42 E-value=1.1 Score=35.21 Aligned_cols=31 Identities=13% Similarity=0.293 Sum_probs=24.5
Q ss_pred EeeccccccccccchhhhhhccCCchhHHHH
Q 029559 134 VYNLSPYMKFHPGGVDMLMKAVGKDCTALFN 164 (191)
Q Consensus 134 VYDVT~fl~~HPGG~~iL~~~aGkDaT~~F~ 164 (191)
.|||..|+.+||.|..+|....+|+.--.+.
T Consensus 65 c~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm 95 (119)
T PF11698_consen 65 CHDIGEFVRHYPNGRNIIEKLGAKERVMELM 95 (119)
T ss_dssp HHHHHHHHHH-GGGHHHHHHHSHHHHHHHHT
T ss_pred hcchHHHHHHChhHHHHHHhcChHHHHHHHh
Confidence 5899999999999999998888887544443
No 16
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=37.82 E-value=6.8 Score=36.96 Aligned_cols=40 Identities=15% Similarity=0.262 Sum_probs=31.5
Q ss_pred CCCeEEEEcCeEeeccccccccccchhhhhhccCCchhHHHH
Q 029559 123 EGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFN 164 (191)
Q Consensus 123 ~~d~WvvI~GkVYDVT~fl~~HPGG~~iL~~~aGkDaT~~F~ 164 (191)
.+..+++|- -|||..|+.+||.|..++.+..||+..=.+.
T Consensus 366 ~d~~~laVA--c~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm 405 (429)
T cd00256 366 VDPIILAVA--CHDIGEYVRHYPRGKDVVEQLGGKQRVMRLL 405 (429)
T ss_pred CCcceeehh--hhhHHHHHHHCccHHHHHHHcCcHHHHHHHh
Confidence 345677666 5999999999999999999888887644333
No 17
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=37.17 E-value=12 Score=35.62 Aligned_cols=42 Identities=17% Similarity=0.327 Sum_probs=32.7
Q ss_pred CCCeEEEEcCeEeeccccccccccchhhhhhccCCchhHHHHhcCC
Q 029559 123 EGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHA 168 (191)
Q Consensus 123 ~~d~WvvI~GkVYDVT~fl~~HPGG~~iL~~~aGkDaT~~F~~~H~ 168 (191)
.+..|+++. -+||+.|+..||-|..++.++.||.. .|+-.+|
T Consensus 379 ~Dp~iL~VA--c~DIge~Vr~yP~gk~vv~k~ggKe~--vM~Llnh 420 (442)
T KOG2759|consen 379 NDPIILCVA--CHDIGEYVRHYPEGKAVVEKYGGKER--VMNLLNH 420 (442)
T ss_pred CCCceeehh--hhhHHHHHHhCchHhHHHHHhchHHH--HHHHhcC
Confidence 356788776 58999999999999999999999853 3444433
No 18
>PHA02131 hypothetical protein
Probab=25.85 E-value=42 Score=23.52 Aligned_cols=21 Identities=24% Similarity=0.545 Sum_probs=16.0
Q ss_pred hhhcCCC-CeEEEE-cCeEeecc
Q 029559 118 KQHQSEG-SMWTVL-KGRVYNLS 138 (191)
Q Consensus 118 ~~H~~~~-d~WvvI-~GkVYDVT 138 (191)
+.|...+ .|||.+ +|+|-|+|
T Consensus 22 rgh~~~g~~c~imfk~~~v~dct 44 (70)
T PHA02131 22 RGHYRFGISCWIMFKNDQVIDCT 44 (70)
T ss_pred ccceecceEEEEEEcCCCEEEee
Confidence 4465555 799987 78999987
No 19
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=25.44 E-value=43 Score=26.55 Aligned_cols=13 Identities=15% Similarity=0.386 Sum_probs=10.9
Q ss_pred eEEEEcCeEeecc
Q 029559 126 MWTVLKGRVYNLS 138 (191)
Q Consensus 126 ~WvvI~GkVYDVT 138 (191)
.=|.|||++|||+
T Consensus 5 ~~itvng~~y~V~ 17 (130)
T PRK06549 5 FKITIDGKEYLVE 17 (130)
T ss_pred EEEEECCEEEEEE
Confidence 4577999999996
No 20
>COG3424 BcsA Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.42 E-value=24 Score=32.53 Aligned_cols=20 Identities=20% Similarity=0.549 Sum_probs=14.6
Q ss_pred eccccccccccchhhhhhccC
Q 029559 136 NLSPYMKFHPGGVDMLMKAVG 156 (191)
Q Consensus 136 DVT~fl~~HPGG~~iL~~~aG 156 (191)
||.-|+ -||||.++|..+.+
T Consensus 270 dI~~w~-~HPGG~KVida~~~ 289 (356)
T COG3424 270 DIEAWV-VHPGGPKVIDAYEE 289 (356)
T ss_pred hhceee-eCCCCchHHHHHHH
Confidence 445544 79999999987654
No 21
>PF05521 Phage_H_T_join: Phage head-tail joining protein ; InterPro: IPR008767 This entry describes the head-tail adaptor protein of bacteriophage SPP1 and related proteins in other bacteriophage and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg7 (RCAP_rcc01689) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2KCA_A 2KZ4_A.
Probab=24.00 E-value=69 Score=21.97 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=13.5
Q ss_pred CCCeEEEEcCeEeeccccc
Q 029559 123 EGSMWTVLKGRVYNLSPYM 141 (191)
Q Consensus 123 ~~d~WvvI~GkVYDVT~fl 141 (191)
..++.|+++|++|+|....
T Consensus 64 ~~~~ri~~~g~~y~I~~i~ 82 (95)
T PF05521_consen 64 TPDMRIKYDGKVYNIKSID 82 (95)
T ss_dssp STTEEEEECTEEEEE-S--
T ss_pred CcceEEEECCEEEEEEEEC
Confidence 3467788999999999843
No 22
>PF02797 Chal_sti_synt_C: Chalcone and stilbene synthases, C-terminal domain; InterPro: IPR012328 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyze the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group []. This domain of chalcone synthase is reported to be structurally similar to domains in thiolase and beta-ketoacyl synthase. The differences in activity are accounted for by differences in the N-terminal domain. ; GO: 0016746 transferase activity, transferring acyl groups; PDB: 3OV2_A 3OV3_B 1Z1F_A 1Z1E_A 3ALE_C 3OIT_A 2H84_A 1TEE_D 1TED_A 2P0U_A ....
Probab=22.39 E-value=29 Score=27.98 Aligned_cols=15 Identities=33% Similarity=0.718 Sum_probs=10.4
Q ss_pred cccccccchhhhhhc
Q 029559 140 YMKFHPGGVDMLMKA 154 (191)
Q Consensus 140 fl~~HPGG~~iL~~~ 154 (191)
|...||||.++|...
T Consensus 62 ~wavHPGG~~ILd~v 76 (151)
T PF02797_consen 62 FWAVHPGGRKILDAV 76 (151)
T ss_dssp EEEEE-SSHHHHHHH
T ss_pred eeeecCChHHHHHHH
Confidence 345899999988654
No 23
>TIGR02334 prpF probable AcnD-accessory protein PrpF. The 2-methylcitrate cycle is one of at least five degradation pathways for propionate via propionyl-CoA. Degradation of propionate toward pyruvate consumes oxaloacetate and releases succinate. Oxidation of succinate back into oxaloacetate by the TCA cycle makes the 2-methylcitrate pathway a cycle. This family consists of PrpF, an incompletely characterized protein that appears to be an essential accessory protein for the Fe/S-dependent 2-methylisocitrate dehydratase AcnD (TIGR02333). This protein is related to but distinct from FldA (part of Pfam family pfam04303), a putative fluorene degradation protein of Sphingomonas sp. LB126.
Probab=20.33 E-value=50 Score=30.99 Aligned_cols=14 Identities=29% Similarity=0.544 Sum_probs=11.5
Q ss_pred CCCCCceeeeeecc
Q 029559 2 NNDNDFTFCKVEKN 15 (191)
Q Consensus 2 ~~~~~~~~~~~~~~ 15 (191)
|-|=||||+||+--
T Consensus 78 ~aDVDY~F~QV~v~ 91 (390)
T TIGR02334 78 GHDVDYLFGQVSID 91 (390)
T ss_pred CCcceEEEEEEeeC
Confidence 46789999999864
Done!