Query 029559
Match_columns 191
No_of_seqs 210 out of 1257
Neff 5.3
Searched_HMMs 29240
Date Tue Mar 26 00:36:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029559.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029559hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ner_A Cytochrome B5 type B; h 99.9 5.8E-28 2E-32 179.3 7.4 84 106-189 6-89 (92)
2 3lf5_A Cytochrome B5 reductase 99.9 3E-28 1E-32 179.5 5.1 80 108-187 4-83 (88)
3 1cyo_A Cytochrome B5; electron 99.9 1.6E-27 5.3E-32 177.1 7.0 80 108-187 3-82 (93)
4 2ibj_A Cytochrome B5, CYTB5; F 99.9 2.1E-27 7.2E-32 174.2 6.9 82 108-189 5-86 (88)
5 1hko_A Cytochrome B5; electron 99.9 4.8E-27 1.6E-31 178.0 7.6 82 107-188 6-87 (104)
6 1x3x_A Cytochrome B5; hemoprot 99.9 1.2E-26 4E-31 168.4 6.3 76 109-185 3-82 (82)
7 1cxy_A Cytochrome B5; helix, b 99.9 4.5E-26 1.5E-30 168.0 7.9 79 108-186 6-88 (90)
8 1mj4_A Sulfite oxidase; cytoch 99.9 5.8E-26 2E-30 164.8 5.2 76 108-184 3-82 (82)
9 2keo_A Probable E3 ubiquitin-p 99.9 5.6E-26 1.9E-30 174.4 1.1 81 107-187 21-101 (112)
10 1kbi_A Cytochrome B2, L-LCR; f 99.8 3.6E-21 1.2E-25 179.0 7.7 82 107-188 6-88 (511)
11 1sox_A Sulfite oxidase; oxidor 99.8 1.4E-20 4.8E-25 173.7 8.2 80 108-188 3-86 (466)
12 1j03_A Putative steroid bindin 99.7 8.1E-17 2.8E-21 121.4 5.2 58 110-169 3-64 (102)
13 1ho8_A Vacuolar ATP synthase s 24.0 5.8 0.0002 36.6 -3.0 30 134-163 426-455 (480)
No 1
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} SCOP: d.120.1.1 PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A*
Probab=99.94 E-value=5.8e-28 Score=179.27 Aligned_cols=84 Identities=25% Similarity=0.550 Sum_probs=78.8
Q ss_pred CCCCcccCHHHHhhhcCCCCeEEEEcCeEeeccccccccccchhhhhhccCCchhHHHHhcCChHHHHHHhhhCeeeeec
Q 029559 106 QSNKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAWVNAEFLLEKCLVGTLD 185 (191)
Q Consensus 106 ~~~~~~it~~Ev~~H~~~~d~WvvI~GkVYDVT~fl~~HPGG~~iL~~~aGkDaT~~F~~~H~~~na~~lL~~~~VG~l~ 185 (191)
.+.++.||++||++|+++++|||+|+|+|||||+|+..||||..+|+.++|+|+|++|+.++|+.+++++|++|+||+|.
T Consensus 6 ~~~~~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~l~~~aG~DaT~~F~~~~Hs~~a~~~L~~~~IG~l~ 85 (92)
T 3ner_A 6 ETSVTYYRLEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAREMLKQYYIGDIH 85 (92)
T ss_dssp CCCSCEECHHHHTTCEETTEEEEEETTEEEECGGGTTTCTTCSHHHHTTTTSBCHHHHHHTTCCHHHHHHHGGGEEEEEC
T ss_pred CCCCCeeCHHHHHhhCCCCCEEEEECCEEEEcccccccCCCHHHHHHHhcCCcchHHHHHcCCCHHHHHHHHhCeeEEEC
Confidence 35678999999999999999999999999999999999999999999999999999999988888899999999999998
Q ss_pred CCCC
Q 029559 186 DSRP 189 (191)
Q Consensus 186 ~~~~ 189 (191)
+++.
T Consensus 86 ~~~~ 89 (92)
T 3ner_A 86 PSDL 89 (92)
T ss_dssp GGGS
T ss_pred hHhc
Confidence 7654
No 2
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens}
Probab=99.94 E-value=3e-28 Score=179.46 Aligned_cols=80 Identities=45% Similarity=0.874 Sum_probs=76.9
Q ss_pred CCcccCHHHHhhhcCCCCeEEEEcCeEeeccccccccccchhhhhhccCCchhHHHHhcCChHHHHHHhhhCeeeeecCC
Q 029559 108 NKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAWVNAEFLLEKCLVGTLDDS 187 (191)
Q Consensus 108 ~~~~it~~Ev~~H~~~~d~WvvI~GkVYDVT~fl~~HPGG~~iL~~~aGkDaT~~F~~~H~~~na~~lL~~~~VG~l~~~ 187 (191)
.++.||++||++|+++++|||+|+|+|||||+|+.+||||.++|+.++|+|+|++|+.+|++.+++++|++|+||+|.+.
T Consensus 4 ~l~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~l~~~aG~DaT~~F~~~h~~~~~~~~L~~~~IG~l~~~ 83 (88)
T 3lf5_A 4 RLIEVTEEELKKHNKKDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGSDGTELFDQVHRWVNYESMLKECLVGRMAIK 83 (88)
T ss_dssp SSEEECHHHHHHCEETTEEEEEETTEEEECGGGTTTCTTCHHHHHTTTTEECHHHHHHHHTTCCHHHHTGGGEEEEECCC
T ss_pred CCCEeCHHHHHhhCCCCCEEEEECCEEEECccchhhCcChhhhhhhcCCCcchHHHHHHCCcHHHHHHHHcCeeEEeCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999989999999999999865
No 3
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ...
Probab=99.94 E-value=1.6e-27 Score=177.06 Aligned_cols=80 Identities=28% Similarity=0.557 Sum_probs=75.8
Q ss_pred CCcccCHHHHhhhcCCCCeEEEEcCeEeeccccccccccchhhhhhccCCchhHHHHhcCChHHHHHHhhhCeeeeecCC
Q 029559 108 NKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAWVNAEFLLEKCLVGTLDDS 187 (191)
Q Consensus 108 ~~~~it~~Ev~~H~~~~d~WvvI~GkVYDVT~fl~~HPGG~~iL~~~aGkDaT~~F~~~H~~~na~~lL~~~~VG~l~~~ 187 (191)
.++.||++||++|+++++|||+|+|+|||||+|+.+||||..+|+.++|+|+|++|+.+||+.+++++|++|+||.|.+.
T Consensus 3 ~~~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aG~DaT~~f~~~~Hs~~a~~~L~~~~IG~l~~~ 82 (93)
T 1cyo_A 3 AVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELHPD 82 (93)
T ss_dssp SCCEECHHHHTTCEETTEEEEEETTEEEECTTTTTTCTTCSHHHHHHTTSBCHHHHHHTTCCHHHHHHHTTTEEEEECGG
T ss_pred CCCccCHHHHHhhCCCCCEEEEECCEEEECCCcchhCcChHHHHHHhcCccchHHHHHcCCCHHHHHHHHhCeeEEecCc
Confidence 46889999999999999999999999999999999999999999999999999999999888899999999999999754
No 4
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica}
Probab=99.94 E-value=2.1e-27 Score=174.25 Aligned_cols=82 Identities=24% Similarity=0.516 Sum_probs=77.2
Q ss_pred CCcccCHHHHhhhcCCCCeEEEEcCeEeeccccccccccchhhhhhccCCchhHHHHhcCChHHHHHHhhhCeeeeecCC
Q 029559 108 NKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAWVNAEFLLEKCLVGTLDDS 187 (191)
Q Consensus 108 ~~~~it~~Ev~~H~~~~d~WvvI~GkVYDVT~fl~~HPGG~~iL~~~aGkDaT~~F~~~H~~~na~~lL~~~~VG~l~~~ 187 (191)
.++.||++||++|+++++|||+|+|+|||||+|+.+||||..+|+.++|+|+|.+|..+||+.+++++|++|+||+|.+.
T Consensus 5 ~~~~~t~~ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aG~DaT~~f~~~~Hs~~a~~~L~~~~IG~l~~~ 84 (88)
T 2ibj_A 5 DVKYFTRAEVAKNNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDVGHSSDAREMMKQYKVGELVAE 84 (88)
T ss_dssp CCCEECHHHHHTSEETTEEEEEETTEEEECGGGTTTCTTCSHHHHTTTTEECHHHHHHHTCCHHHHHHHGGGEEEEECGG
T ss_pred cCCccCHHHHHHhCCCCCEEEEECCEEEECCcchhhCcCHHHHHHHhCCCcchHHHHHcCCCHHHHHHHHcCceEEeCcc
Confidence 46899999999999999999999999999999999999999999999999999999998888899999999999999876
Q ss_pred CC
Q 029559 188 RP 189 (191)
Q Consensus 188 ~~ 189 (191)
+.
T Consensus 85 ~~ 86 (88)
T 2ibj_A 85 ER 86 (88)
T ss_dssp GC
T ss_pred cc
Confidence 54
No 5
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A*
Probab=99.94 E-value=4.8e-27 Score=178.03 Aligned_cols=82 Identities=27% Similarity=0.543 Sum_probs=77.3
Q ss_pred CCCcccCHHHHhhhcCCCCeEEEEcCeEeeccccccccccchhhhhhccCCchhHHHHhcCChHHHHHHhhhCeeeeecC
Q 029559 107 SNKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAWVNAEFLLEKCLVGTLDD 186 (191)
Q Consensus 107 ~~~~~it~~Ev~~H~~~~d~WvvI~GkVYDVT~fl~~HPGG~~iL~~~aGkDaT~~F~~~H~~~na~~lL~~~~VG~l~~ 186 (191)
..++.||++||++|+++++|||+|+|+|||||+|+.+||||..+|+.++|+|+|.+|+.+||+.+++++|++|+||.|.+
T Consensus 6 ~~~~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aGkDaT~~F~~~~Hs~~a~~~L~~~~IG~l~~ 85 (104)
T 1hko_A 6 KAVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELHP 85 (104)
T ss_dssp CCCEEECHHHHHHCBSSSSBEEEETTEEEEHHHHSSSSSSCSHHHHTTCSEECHHHHTTTTCCHHHHHHHTTTEEEEECT
T ss_pred ccCCccCHHHHHHhcCCCCEEEEECCEEEECCcchhhCcChHHHHHHhcCccchHHHHHcCCCHHHHHHHHcCeeEEECC
Confidence 45689999999999999999999999999999999999999999999999999999999988889999999999999986
Q ss_pred CC
Q 029559 187 SR 188 (191)
Q Consensus 187 ~~ 188 (191)
.+
T Consensus 86 ~~ 87 (104)
T 1hko_A 86 DD 87 (104)
T ss_dssp TS
T ss_pred cc
Confidence 54
No 6
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum}
Probab=99.93 E-value=1.2e-26 Score=168.39 Aligned_cols=76 Identities=25% Similarity=0.512 Sum_probs=72.9
Q ss_pred CcccCHHHHhhhcCCCCeEEEEcCeEeeccccccccccchhhhhhccCCchhHH--HHhcC--ChHHHHHHhhhCeeeee
Q 029559 109 KRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTAL--FNKYH--AWVNAEFLLEKCLVGTL 184 (191)
Q Consensus 109 ~~~it~~Ev~~H~~~~d~WvvI~GkVYDVT~fl~~HPGG~~iL~~~aGkDaT~~--F~~~H--~~~na~~lL~~~~VG~l 184 (191)
.+.||++||++|+++++|||+|+|+|||||+|+.+|||| ++|+.++|+|+|++ |+.+| |+.+++++|++|+||.|
T Consensus 3 ~~~~t~~ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG-~~i~~~aG~D~T~~~~F~~~h~~hs~~a~~~L~~~~IG~l 81 (82)
T 1x3x_A 3 DKKYTKEEVAKHNTQNDLWIIYDGEVHDMTSFYKEHPGG-KVILNKAGQDATSVLKTLAPHVKAADVVMKKLKQTCIGKV 81 (82)
T ss_dssp SCEECHHHHHTCEETTEEEEEETTEEEECGGGGGGCTTG-GGGGGGTTSBCHHHHHHSHHHHHTHHHHHHHHHHHEEEEE
T ss_pred CCccCHHHHHhhCCCCCEEEEECCEEEECCcchhhCcCh-hhhhhhCCCCCchhhhhhcccccchHHHHHHHHhCcceEe
Confidence 478999999999999999999999999999999999999 99999999999999 99999 99999999999999998
Q ss_pred c
Q 029559 185 D 185 (191)
Q Consensus 185 ~ 185 (191)
.
T Consensus 82 ~ 82 (82)
T 1x3x_A 82 K 82 (82)
T ss_dssp C
T ss_pred C
Confidence 4
No 7
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1
Probab=99.93 E-value=4.5e-26 Score=168.04 Aligned_cols=79 Identities=30% Similarity=0.615 Sum_probs=72.1
Q ss_pred CCcccCHHHHhhhcCCCCeEEEEcCeEeeccccccccccchhhhhhccCCchhHHHH----hcCChHHHHHHhhhCeeee
Q 029559 108 NKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFN----KYHAWVNAEFLLEKCLVGT 183 (191)
Q Consensus 108 ~~~~it~~Ev~~H~~~~d~WvvI~GkVYDVT~fl~~HPGG~~iL~~~aGkDaT~~F~----~~H~~~na~~lL~~~~VG~ 183 (191)
..+.||++||++|+++++|||+|+|+|||||+|+.+||||..+|+.++|+|+|++|+ ..+|+.+++++|++|+||+
T Consensus 6 ~~~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aG~DaT~~f~~~~~~~~Hs~~a~~~L~~~~IG~ 85 (90)
T 1cxy_A 6 TLPVFTLEQVAEHHSPDDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQESTEAWETKSYGEPHSSLAARLLQRYLIGT 85 (90)
T ss_dssp CCCBCCHHHHTTCEETTEEEEEETTEEEECTTTGGGCCSSTTTTGGGTTSBCHHHHHHTTTTCCCCHHHHHHHHHTEEEE
T ss_pred cCCCcCHHHHHHhcCCCCEEEEECCEEEECccchhhCcChHHHHHHHCCcchhHHHhhcccccCCCHHHHHHHHhCceeE
Confidence 357899999999999999999999999999999999999999999999999999999 4566778899999999999
Q ss_pred ecC
Q 029559 184 LDD 186 (191)
Q Consensus 184 l~~ 186 (191)
|.+
T Consensus 86 l~~ 88 (90)
T 1cxy_A 86 LEE 88 (90)
T ss_dssp C--
T ss_pred eCC
Confidence 864
No 8
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1
Probab=99.92 E-value=5.8e-26 Score=164.83 Aligned_cols=76 Identities=29% Similarity=0.538 Sum_probs=68.7
Q ss_pred CCcccCHHHHhhhcCCCC-eEEEEcCeEeeccccccccccchhhhhhccCCchhHHHHh---cCChHHHHHHhhhCeeee
Q 029559 108 NKRLITMDEVKQHQSEGS-MWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNK---YHAWVNAEFLLEKCLVGT 183 (191)
Q Consensus 108 ~~~~it~~Ev~~H~~~~d-~WvvI~GkVYDVT~fl~~HPGG~~iL~~~aGkDaT~~F~~---~H~~~na~~lL~~~~VG~ 183 (191)
.++.||++||++|+++++ |||+|+|+|||||+|+.+||||.+.|+.++|+| |..|+. +||+.+|++||++|+||+
T Consensus 3 ~~~~~t~~ev~~h~~~~~~~wv~i~g~VYDvt~f~~~HPGG~~~il~~aG~D-t~~f~~~~~~~hs~~a~~~L~~~~IG~ 81 (82)
T 1mj4_A 3 STHIYTKEEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAGGP-LEPFWALYAVHNQSHVRELLAQYKIGE 81 (82)
T ss_dssp CCCBCCCC-CTTCEETTTEEEEEETTEEEECTTTGGGSTTCHHHHHTTTTSB-SHHHHTTCGGGCSHHHHHHHHTTEEEE
T ss_pred CCCccCHHHHHHhcCCCCCeEEEECCEEEEchHHHHhCCCHhHHHHHHcCCC-hHHHHhhccccCcHHHHHHHHhCccee
Confidence 458899999999999997 999999999999999999999988888899999 578886 478889999999999998
Q ss_pred e
Q 029559 184 L 184 (191)
Q Consensus 184 l 184 (191)
|
T Consensus 82 l 82 (82)
T 1mj4_A 82 L 82 (82)
T ss_dssp C
T ss_pred C
Confidence 6
No 9
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, ligase binding, phosphoprotein; NMR {Homo sapiens}
Probab=99.91 E-value=5.6e-26 Score=174.45 Aligned_cols=81 Identities=17% Similarity=0.402 Sum_probs=74.8
Q ss_pred CCCcccCHHHHhhhcCCCCeEEEEcCeEeeccccccccccchhhhhhccCCchhHHHHhcCChHHHHHHhhhCeeeeecC
Q 029559 107 SNKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAWVNAEFLLEKCLVGTLDD 186 (191)
Q Consensus 107 ~~~~~it~~Ev~~H~~~~d~WvvI~GkVYDVT~fl~~HPGG~~iL~~~aGkDaT~~F~~~H~~~na~~lL~~~~VG~l~~ 186 (191)
..++.||++||++|+++++|||+|+|+|||||+|+.+||||..+|+.++|+|+|++|+.++|+.+|+++|++|+||.|.+
T Consensus 21 ~~~~~~t~~Ev~~h~~~~d~wvvi~G~VYDVT~fl~~HPGG~~~l~~~aGkDaT~~F~~~~Hs~~a~~~L~~~~IG~l~~ 100 (112)
T 2keo_A 21 EKVTLVRIADLENHNNDGGFWTVIDGKVYDIKDFQTQSLTENSILAQFAGEDPVVALEAALQFEDTRESMHAFCVGQYLE 100 (112)
T ss_dssp CCCCEECHHHHHHHHHHTCCEEEETTEEEEHHHHHHHHTSTTSTTGGGTTSCHHHHHHHHHHSTTGGGTHHHHEEEEECC
T ss_pred CCCCccCHHHHHHhcCCCCEEEEECCEEEECCcchhhCCCchhhhhhhCCccchHHHhHcCCCHHHHHHHHhCceEeeCC
Confidence 35689999999999999999999999999999999999999999999999999999999755777889999999999974
Q ss_pred C
Q 029559 187 S 187 (191)
Q Consensus 187 ~ 187 (191)
.
T Consensus 101 ~ 101 (112)
T 2keo_A 101 P 101 (112)
T ss_dssp H
T ss_pred c
Confidence 3
No 10
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=99.83 E-value=3.6e-21 Score=179.01 Aligned_cols=82 Identities=34% Similarity=0.567 Sum_probs=75.4
Q ss_pred CCCcccCHHHHhhhcCCCCeEEEEcCeEeeccccccccccchhhhhhccCCchhHHHHhcCChHHHHHHh-hhCeeeeec
Q 029559 107 SNKRLITMDEVKQHQSEGSMWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNKYHAWVNAEFLL-EKCLVGTLD 185 (191)
Q Consensus 107 ~~~~~it~~Ev~~H~~~~d~WvvI~GkVYDVT~fl~~HPGG~~iL~~~aGkDaT~~F~~~H~~~na~~lL-~~~~VG~l~ 185 (191)
...+.||++||++|+++++|||+|+|+|||||+|+.+||||..+|+.++|+|+|+.|+.+|++.+.+++| ++|+||.|.
T Consensus 6 ~~~~~~t~~ev~~h~~~~~~wv~i~g~VYDvt~f~~~HPGG~~~i~~~aG~DaT~~f~~~H~~~~~~~~l~~~~~iG~l~ 85 (511)
T 1kbi_A 6 MNKQKISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPLHAPNVIDKYIAPEKKLGPLQ 85 (511)
T ss_dssp SCSCCBCTTHHHHCEETTEEEEEETTEEEECTTTGGGCTTCHHHHHTTTTSBCHHHHGGGSCTTHHHHHSCGGGEEEEBC
T ss_pred CCCCccCHHHHHHhCCCCCEEEEECCEEEECCcchhhCcChHHHHHHHcCcchhhhhhhcCCHHHHHHhhccccEEEEec
Confidence 4568999999999999999999999999999999999999999999999999999999999988876655 889999997
Q ss_pred CCC
Q 029559 186 DSR 188 (191)
Q Consensus 186 ~~~ 188 (191)
+..
T Consensus 86 ~~~ 88 (511)
T 1kbi_A 86 GSM 88 (511)
T ss_dssp SCC
T ss_pred CCc
Confidence 653
No 11
>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1 d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A* 3r19_A*
Probab=99.82 E-value=1.4e-20 Score=173.66 Aligned_cols=80 Identities=26% Similarity=0.437 Sum_probs=73.7
Q ss_pred CCcccCHHHHhhhcCCCC-eEEEEcCeEeeccccccccccchhhhhhccCCchhHHHHh---cCChHHHHHHhhhCeeee
Q 029559 108 NKRLITMDEVKQHQSEGS-MWTVLKGRVYNLSPYMKFHPGGVDMLMKAVGKDCTALFNK---YHAWVNAEFLLEKCLVGT 183 (191)
Q Consensus 108 ~~~~it~~Ev~~H~~~~d-~WvvI~GkVYDVT~fl~~HPGG~~iL~~~aGkDaT~~F~~---~H~~~na~~lL~~~~VG~ 183 (191)
.++.||++||++|+++++ |||+|+|+|||||+|+++||||.++|+.++|+| |+.|+. +||+.+++++|++|+||.
T Consensus 3 ~~~~~t~~Ev~~H~~~~d~~Wvii~g~VYDvT~fl~~HPGG~~~il~~aG~D-T~~f~~~~~~~Hs~~a~~~L~~~~IG~ 81 (466)
T 1sox_A 3 SYPEYTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGA-LEPFWALYAVHGEPHVLELLQQYKVGE 81 (466)
T ss_dssp CCCEECHHHHTTCEETTTEEEEEETTEEEECTTTTTTSTTCHHHHGGGTTSB-SHHHHHHSGGGGSHHHHHHHHTTEEEE
T ss_pred CCCeeCHHHHHHhcCCCCceEEEECCEEEechHhHhhCcCCcccchhhcCCc-cccccccccccCCHHHHHHHHhCceEE
Confidence 468899999999999998 999999999999999999999998999999999 999986 478888999999999999
Q ss_pred ecCCC
Q 029559 184 LDDSR 188 (191)
Q Consensus 184 l~~~~ 188 (191)
|.+.+
T Consensus 82 l~~~~ 86 (466)
T 1sox_A 82 LSPDE 86 (466)
T ss_dssp ECCCC
T ss_pred ecccc
Confidence 97654
No 12
>1j03_A Putative steroid binding protein; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.120.1.2 PDB: 1t0g_A
Probab=99.65 E-value=8.1e-17 Score=121.43 Aligned_cols=58 Identities=21% Similarity=0.373 Sum_probs=52.2
Q ss_pred cccCHHHHhhhcCCC---CeEEEEcCeEeecccccc-ccccchhhhhhccCCchhHHHHhcCCh
Q 029559 110 RLITMDEVKQHQSEG---SMWTVLKGRVYNLSPYMK-FHPGGVDMLMKAVGKDCTALFNKYHAW 169 (191)
Q Consensus 110 ~~it~~Ev~~H~~~~---d~WvvI~GkVYDVT~fl~-~HPGG~~iL~~~aGkDaT~~F~~~H~~ 169 (191)
+.||++||++|++.+ +|||+|+|+|||||.|.. +||||. +..+||+|||.+|..++|.
T Consensus 3 ~~~T~~El~~~ng~~~~~~~~vaI~G~VYDVT~~~~~~hPGG~--~~~~AG~DaT~~f~~~~~~ 64 (102)
T 1j03_A 3 MEFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGD--YSMFAGKDASRALGKMSKN 64 (102)
T ss_dssp CCCCHHHHTTCBSCSSSCCBEEEETTEEEECGGGHHHHSSSST--TTTTTTSBCHHHHHHTCCC
T ss_pred cccCHHHHHHhcCCCCCCCEEEEECCEEEECCCCccccCCCCc--ccccccchHHHHHHHcCCC
Confidence 579999999999875 799999999999999987 799997 4589999999999998763
No 13
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=23.99 E-value=5.8 Score=36.65 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=24.8
Q ss_pred EeeccccccccccchhhhhhccCCchhHHH
Q 029559 134 VYNLSPYMKFHPGGVDMLMKAVGKDCTALF 163 (191)
Q Consensus 134 VYDVT~fl~~HPGG~~iL~~~aGkDaT~~F 163 (191)
-|||..|+.+||.|..++.+..||+..=.+
T Consensus 426 c~Digefvr~~P~gr~i~~~lg~K~~VM~L 455 (480)
T 1ho8_A 426 LNDITHVVELLPESIDVLDKTGGKADIMEL 455 (480)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHSHHHHHHHH
T ss_pred cccHHHHHHHCcchhHHHHHcCcHHHHHHH
Confidence 489999999999999999888887654333
Done!