Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>029563
MENEKHPSISVPLVSRLDHLESIMKDLERKQNLAKWGCNSNNSERQRQHLPLNLAAREAY
FKGSLLDRVASLENRLFQLCLELESSSTYGNSTETNISRDASSSQGSKKQVSEFSNNPYQ
PQKHEPGPQVLATSNSSENQGKYWKKVQQRRKQPSPIKQRGKSKINRDEKTCNRGKTRVS
SNWPHLKLLGC

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  029563
        (191 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:505006676 - symbol:MSP2 "AT5G46795" species:37...   313  5.0e-28   1


>TAIR|locus:505006676 [details] [associations]
            symbol:MSP2 "AT5G46795" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009555
            "pollen development" evidence=IEP] [GO:0009507 "chloroplast"
            evidence=IDA] EMBL:CP002688 GO:GO:0009507 GO:GO:0009555
            EMBL:DQ447047 IPI:IPI00532286 RefSeq:NP_568669.1 UniGene:At.29930
            EnsemblPlants:AT5G46795.1 GeneID:834723 KEGG:ath:AT5G46795
            TAIR:At5g46795 InParanoid:Q1PDM1 OMA:QICLELE PhylomeDB:Q1PDM1
            ProtClustDB:CLSN2689944 Genevestigator:Q1PDM1 Uniprot:Q1PDM1
        Length = 192

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 82/200 (41%), Positives = 120/200 (60%)

Query:     1 MENEKHPSISVPLVSRLDHLESIMKDLERKQNLAKWGCNSNNSERQRQHLPLNLAAREAY 60
             +E +KH   S+P++SRL+HL+ ++K+LER+QNL KW     ++   R  +    A REAY
Sbjct:     4 IEQQKHSLSSLPMLSRLEHLDFVIKNLERQQNLPKW--KDESAPTTRGLIDRGTAIREAY 61

Query:    61 FKGSLLDRVASLENRLFQLCLELESSSTYGNSTETNISRDASSSQGSKKQVSE----FSN 116
             FKGSLLDR+A+LE RLFQ+CLELESSS  G+ST T  S + +SSQ  K+ +++    FS+
Sbjct:    62 FKGSLLDRIAALETRLFQICLELESSS--GSSTSTGGSGE-TSSQRIKRDLTKTLPIFSS 118

Query:   117 N--PYQ-PQKHEPGPQVLATSNSSENQGKYWKKVQQRRKQPSPIKQRGKSKINRDEKTCN 173
             N  P+  P +H   PQ L      E + +  K+ +   ++P   K+  K+K N   +TC 
Sbjct:   119 NINPFHVPLQH---PQDL---REMEEKIEEEKEEEINVEKPLLEKKNKKTKKNDANETCK 172

Query:   174 --RGKTRVSSNWPHLKLLGC 191
               + KT+    W    LLGC
Sbjct:   173 PKKKKTKSPKKWSRFSLLGC 192


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.309   0.124   0.358    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      191       191   0.00094  110 3  11 23  0.41    33
                                                     31  0.43    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  586 (62 KB)
  Total size of DFA:  165 KB (2098 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.29u 0.08s 24.37t   Elapsed:  00:00:01
  Total cpu time:  24.29u 0.08s 24.37t   Elapsed:  00:00:01
  Start:  Sat May 11 02:41:34 2013   End:  Sat May 11 02:41:35 2013

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