BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029563
         (191 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2W2J|A Chain A, Crystal Structure Of The Human Carbonic Anhydrase Related
           Protein Viii
          Length = 291

 Score = 28.5 bits (62), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 17/92 (18%)

Query: 34  AKWGCNSNNSERQRQHLPLNLAAREAYFKGSLLDRVASLENRLFQLCLELESSSTYGNST 93
            +WG    ++  + Q  P+NL +REA +  SLLD               +  S  Y    
Sbjct: 36  VEWGLVFPDANGEYQS-PINLNSREARYDPSLLD---------------VRLSPNYVVCR 79

Query: 94  ETNISRDASSSQGSKKQVSEFSNNPYQPQKHE 125
           +  ++ D  + Q   K  S  S  P  PQ HE
Sbjct: 80  DCEVTNDGHTIQVILKSKSVLSGGPL-PQGHE 110


>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
           From Rhodopseudomonas Palustris Cga009 At 2.57 A
           Resolution
 pdb|3PM9|B Chain B, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
           From Rhodopseudomonas Palustris Cga009 At 2.57 A
           Resolution
 pdb|3PM9|C Chain C, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
           From Rhodopseudomonas Palustris Cga009 At 2.57 A
           Resolution
 pdb|3PM9|D Chain D, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
           From Rhodopseudomonas Palustris Cga009 At 2.57 A
           Resolution
 pdb|3PM9|E Chain E, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
           From Rhodopseudomonas Palustris Cga009 At 2.57 A
           Resolution
 pdb|3PM9|F Chain F, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
           From Rhodopseudomonas Palustris Cga009 At 2.57 A
           Resolution
          Length = 476

 Score = 27.7 bits (60), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 63  GSLLDRV---ASLENRLFQLCLELESSSTYGNSTETNISRDASSSQG 106
           G++L RV   A+  +RLF L L  + S T G +  TN    A+ + G
Sbjct: 123 GAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYG 169


>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
           Maritima
 pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
           Maritima Complexed With 5-formyl-thf
          Length = 482

 Score = 26.6 bits (57), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 25/53 (47%)

Query: 61  FKGSLLDRVASLENRLFQLCLELESSSTYGNSTETNISRDASSSQGSKKQVSE 113
            KG L D V SL   L ++  E+     Y +  ETN     +  +  K++++E
Sbjct: 177 LKGGLRDFVDSLRRELIEVLAEIRVELDYPDEIETNTGEVVTRLERIKEKLTE 229


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.309    0.124    0.358 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,258,836
Number of Sequences: 62578
Number of extensions: 185194
Number of successful extensions: 323
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 321
Number of HSP's gapped (non-prelim): 6
length of query: 191
length of database: 14,973,337
effective HSP length: 93
effective length of query: 98
effective length of database: 9,153,583
effective search space: 897051134
effective search space used: 897051134
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 48 (23.1 bits)