BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029563
         (191 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9H2F9|CCD68_HUMAN Coiled-coil domain-containing protein 68 OS=Homo sapiens GN=CCDC68
           PE=2 SV=1
          Length = 335

 Score = 34.3 bits (77), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 5/53 (9%)

Query: 53  NLAAREAYFKGSLLDRVASLENRLFQLCLELESSSTYGNSTETNISRDASSSQ 105
           NL  R    K +LL+R  SLEN+L Q    L+SS+TYG S + ++ R+ S  Q
Sbjct: 193 NLVQRMEKEKRTLLERKLSLENKLLQ----LKSSATYGKSCQ-DLQREISILQ 240


>sp|P45732|PALY_STYHU Phenylalanine ammonia-lyase OS=Stylosanthes humilis GN=PAL17.1 PE=2
           SV=1
          Length = 715

 Score = 31.2 bits (69), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 4/78 (5%)

Query: 38  CNSNNSERQRQHLPLNLAAREAYFKGSLLDRVASLENRLFQLCLELESSSTYGNSTETNI 97
           C + N+ +Q +H PLN AA     KGS LD V  + +   +  + L   +     T + +
Sbjct: 12  CLTANNGQQPRHDPLNWAAAAEALKGSHLDEVKRMVSEYRKPLVNLGGQTL----TISQV 67

Query: 98  SRDASSSQGSKKQVSEFS 115
           +  A++ QG   Q+SE S
Sbjct: 68  AAIAANDQGVSVQLSEAS 85


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.309    0.124    0.358 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,656,629
Number of Sequences: 539616
Number of extensions: 2524836
Number of successful extensions: 8483
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 8242
Number of HSP's gapped (non-prelim): 280
length of query: 191
length of database: 191,569,459
effective HSP length: 111
effective length of query: 80
effective length of database: 131,672,083
effective search space: 10533766640
effective search space used: 10533766640
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.9 bits)