Query 029563
Match_columns 191
No_of_seqs 25 out of 27
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 14:55:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029563.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029563hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04912 Dynamitin: Dynamitin 82.3 5.6 0.00012 36.0 7.1 74 11-86 205-280 (388)
2 PRK13182 racA polar chromosome 67.9 23 0.00049 29.7 6.6 29 56-84 121-149 (175)
3 PF10359 Fmp27_WPPW: RNA pol I 59.5 28 0.00061 32.7 6.3 71 14-92 169-239 (475)
4 PF09277 Erythro-docking: Eryt 58.7 8.3 0.00018 28.0 2.1 24 9-32 4-27 (58)
5 COG3937 Uncharacterized conser 47.0 44 0.00095 26.9 4.7 54 20-83 48-106 (108)
6 PF05549 Allexi_40kDa: Allexiv 43.8 72 0.0016 29.3 6.1 21 64-84 115-135 (271)
7 PF11471 Sugarporin_N: Maltopo 42.4 33 0.00072 24.4 3.1 23 62-84 27-49 (60)
8 PRK11820 hypothetical protein; 40.7 75 0.0016 28.5 5.7 19 13-31 157-175 (288)
9 TIGR00255 conserved hypothetic 40.6 76 0.0016 28.5 5.7 19 13-31 159-177 (291)
10 PF03980 Nnf1: Nnf1 ; InterPr 39.0 1.6E+02 0.0035 21.9 7.1 65 12-82 31-95 (109)
11 TIGR01461 greB transcription e 37.4 55 0.0012 26.6 4.0 34 52-85 28-70 (156)
12 KOG0526 Nucleosome-binding fac 34.1 14 0.00029 37.0 0.0 45 137-185 493-537 (615)
13 PF03449 GreA_GreB_N: Transcri 33.8 79 0.0017 23.0 4.0 33 52-84 29-70 (74)
14 TIGR01462 greA transcription e 33.2 80 0.0017 25.1 4.3 37 52-88 25-70 (151)
15 PF04912 Dynamitin: Dynamitin 32.1 1.2E+02 0.0026 27.5 5.7 23 63-85 205-227 (388)
16 PRK05892 nucleoside diphosphat 31.8 78 0.0017 25.9 4.0 33 53-85 31-72 (158)
17 PF13591 MerR_2: MerR HTH fami 31.3 44 0.00095 24.3 2.3 20 61-80 64-83 (84)
18 PRK06342 transcription elongat 31.1 88 0.0019 25.8 4.3 32 54-85 48-82 (160)
19 KOG1419 Voltage-gated K+ chann 29.6 75 0.0016 32.2 4.2 29 57-85 559-587 (654)
20 PF05130 FlgN: FlgN protein; 28.7 2.1E+02 0.0046 20.6 5.6 36 51-86 35-70 (143)
21 TIGR01674 phage_lambda_G phage 28.7 36 0.00077 28.4 1.6 73 8-81 17-110 (138)
22 PF06156 DUF972: Protein of un 28.4 65 0.0014 25.2 2.9 20 63-82 4-23 (107)
23 PRK10265 chaperone-modulator p 27.5 69 0.0015 24.1 2.9 21 63-83 74-94 (101)
24 PF06894 Phage_lambd_GpG: Bact 27.0 37 0.00081 27.4 1.4 24 7-30 16-39 (127)
25 PRK00226 greA transcription el 27.0 1.1E+02 0.0023 24.5 4.0 36 52-87 30-74 (157)
26 KOG2189 Vacuolar H+-ATPase V0 25.8 1.4E+02 0.0031 31.2 5.5 19 14-32 55-73 (829)
27 PRK01885 greB transcription el 25.7 1.1E+02 0.0024 24.9 3.9 33 53-85 31-72 (157)
28 TIGR01748 rhaA L-rhamnose isom 24.3 72 0.0016 30.8 3.0 21 54-74 354-374 (414)
29 PRK13169 DNA replication intia 23.7 90 0.002 24.7 3.0 20 63-82 4-23 (110)
30 PRK01076 L-rhamnose isomerase; 23.2 78 0.0017 30.6 3.0 21 54-74 358-378 (419)
31 PF10393 Matrilin_ccoil: Trime 22.8 1.4E+02 0.0029 20.7 3.3 12 65-76 35-46 (47)
32 PF01166 TSC22: TSC-22/dip/bun 22.6 1.1E+02 0.0024 22.4 3.0 26 54-82 11-36 (59)
33 KOG1333 Uncharacterized conser 21.2 75 0.0016 28.7 2.3 43 47-89 167-212 (241)
34 PF12486 DUF3702: ImpA domain 20.9 1.3E+02 0.0028 24.9 3.4 68 13-80 64-140 (148)
35 KOG3958 Putative dynamitin [Cy 20.8 3.7E+02 0.008 25.7 6.8 73 11-85 187-261 (371)
36 COG5034 TNG2 Chromatin remodel 20.3 3.6E+02 0.0077 24.9 6.4 19 60-78 83-101 (271)
37 PF07058 Myosin_HC-like: Myosi 20.0 1.3E+02 0.0029 28.5 3.7 25 54-78 137-161 (351)
No 1
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=82.29 E-value=5.6 Score=35.99 Aligned_cols=74 Identities=30% Similarity=0.264 Sum_probs=58.3
Q ss_pred cchhhhhhhhHHHHHHHHHhcccccCCCCCCCchhhccccCHHHHHHHHHhhccHHH--HHHHHHHHHHHHHHHhhcC
Q 029563 11 VPLVSRLDHLESIMKDLERKQNLAKWGCNSNNSERQRQHLPLNLAAREAYFKGSLLD--RVASLENRLFQLCLELESS 86 (191)
Q Consensus 11 ~PiLsRLDRLD~~Lr~LEe~r~~~k~~~~sa~~~~e~qcrpl~~ALeEvq~KGSLmD--RLa~LE~RllqL~~ELe~~ 86 (191)
...++|+-.||..|..||..-|......+.. .......||-.+|.+.+.+=+|++ .|..+|.||-.|..+|+.=
T Consensus 205 ~~~la~~a~LE~RL~~LE~~lG~~~~~~~~l--~~~~~~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l 280 (388)
T PF04912_consen 205 SQQLARAADLEKRLARLESALGIDSDKMSSL--DSDTSSSPLLPALNELERQLSLLDPAKLDSIERRLKSLLSELEEL 280 (388)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCccccccc--cccCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999988732222222 112238999999999999999994 7899999999999998653
No 2
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=67.93 E-value=23 Score=29.72 Aligned_cols=29 Identities=24% Similarity=0.183 Sum_probs=20.1
Q ss_pred HHHHHhhccHHHHHHHHHHHHHHHHHHhh
Q 029563 56 AREAYFKGSLLDRVASLENRLFQLCLELE 84 (191)
Q Consensus 56 LeEvq~KGSLmDRLa~LE~RllqL~~ELe 84 (191)
|++=.-=-.++.||..||.||.+++....
T Consensus 121 l~hr~e~ee~~~~l~~le~~~~~~e~~~~ 149 (175)
T PRK13182 121 LQHRREMEEMLERLQKLEARLKKLEPIYI 149 (175)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33333334588999999999999664433
No 3
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=59.52 E-value=28 Score=32.72 Aligned_cols=71 Identities=27% Similarity=0.219 Sum_probs=41.4
Q ss_pred hhhhhhhHHHHHHHHHhcccccCCCCCCCchhhccccCHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 029563 14 VSRLDHLESIMKDLERKQNLAKWGCNSNNSERQRQHLPLNLAAREAYFKGSLLDRVASLENRLFQLCLELESSSTYGNS 92 (191)
Q Consensus 14 LsRLDRLD~~Lr~LEe~r~~~k~~~~sa~~~~e~qcrpl~~ALeEvq~KGSLmDRLa~LE~RllqL~~ELe~~~~s~~s 92 (191)
=.||+.|+-.+..++++-+.... .... ...-.-+....++ --.|.+|+..|++-+..|.........+.++
T Consensus 169 ~~Rl~~L~~qi~~~~~~l~~~~~-~~~~----~~~~~~~~~l~~~---~~~l~~~~~~l~~~l~~l~~~~~~~~~~~~~ 239 (475)
T PF10359_consen 169 QERLDELEEQIEKHEEKLGELEL-NPDD----PELKSDIEELERH---ISSLKERIEFLENMLEDLEDSESSSDQSSSS 239 (475)
T ss_pred HHHHHHHHHHHHHHHHhhhcccc-cccc----HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhccccCCCCCC
Confidence 46888888888888877544322 0000 0001112222222 2457888899988888888877776666443
No 4
>PF09277 Erythro-docking: Erythronolide synthase, docking; InterPro: IPR015357 Docking domains are found in prokaryotic erythronolide synthase. They adopt a structure consisting of a bundle of four alpha-helices, and mediate homodimerisation of the protein, stabilising the resulting complex []. ; PDB: 1PZQ_A.
Probab=58.69 E-value=8.3 Score=28.02 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=18.1
Q ss_pred CCcchhhhhhhhHHHHHHHHHhcc
Q 029563 9 ISVPLVSRLDHLESIMKDLERKQN 32 (191)
Q Consensus 9 s~~PiLsRLDRLD~~Lr~LEe~r~ 32 (191)
.-++|++|||||+..|.-|=...+
T Consensus 4 p~v~v~a~lDrLE~aL~aLpd~dG 27 (58)
T PF09277_consen 4 PDVDVGAELDRLEAALLALPDEDG 27 (58)
T ss_dssp S-STTHHHHHHHHHHHHHHTTSS-
T ss_pred CCcchhHHHHHHHHHHhcCCcccc
Confidence 458999999999999887755443
No 5
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=47.01 E-value=44 Score=26.91 Aligned_cols=54 Identities=15% Similarity=0.226 Sum_probs=35.6
Q ss_pred hHHHHHHHHHhcccccCCCCCCCchhhccccCHHHHHHHHH-hh----ccHHHHHHHHHHHHHHHHHHh
Q 029563 20 LESIMKDLERKQNLAKWGCNSNNSERQRQHLPLNLAAREAY-FK----GSLLDRVASLENRLFQLCLEL 83 (191)
Q Consensus 20 LD~~Lr~LEe~r~~~k~~~~sa~~~~e~qcrpl~~ALeEvq-~K----GSLmDRLa~LE~RllqL~~EL 83 (191)
+|-+|++..+.++- ..++..+-|..++.... +. -.|=+||.-||.||.+|.-++
T Consensus 48 vddl~~q~k~~~~e----------~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 48 VDDLLRQAKEAQGE----------LEEKIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLENKL 106 (108)
T ss_pred HHHHHHHHHHHhhh----------HHHhhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666766655533 23345556666666655 22 357789999999999998765
No 6
>PF05549 Allexi_40kDa: Allexivirus 40kDa protein; InterPro: IPR008398 This family of sequences contains the 40 kDa polypeptides from garlic viruses (Allexiviruses), which do not resemble any other plant virus gene products reported so far []. Rod-shaped flexuous viruses have been isolated from garlic plants, Allium sativum. Infection by this virus creates typical mosaic symptoms. The core-like sequence of a zinc finger protein preceded by a cluster of basic amino acid residues shows similarities to the corresponding 12K proteins of the potexviruses and carlaviruses []. Viral epidemics by allexiviruses are also known to be caused by aphids and eriophyid mites (Aceria tulipae) carrying Potyviruses, Carlaviruses, and Allexiviruses [].
Probab=43.77 E-value=72 Score=29.27 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=16.5
Q ss_pred cHHHHHHHHHHHHHHHHHHhh
Q 029563 64 SLLDRVASLENRLFQLCLELE 84 (191)
Q Consensus 64 SLmDRLa~LE~RllqL~~ELe 84 (191)
.++.+|+.+|.||-.|-.-|+
T Consensus 115 ~~~~~l~~iet~L~~lh~kld 135 (271)
T PF05549_consen 115 KLLKKLASIETSLESLHIKLD 135 (271)
T ss_pred hHHHHHHHHHhHHHHHHHHHH
Confidence 788999999997777766553
No 7
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=42.39 E-value=33 Score=24.40 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=18.6
Q ss_pred hccHHHHHHHHHHHHHHHHHHhh
Q 029563 62 KGSLLDRVASLENRLFQLCLELE 84 (191)
Q Consensus 62 KGSLmDRLa~LE~RllqL~~ELe 84 (191)
.-||=.||+.||.||.+..-++.
T Consensus 27 ~ltiEqRLa~LE~rL~~ae~ra~ 49 (60)
T PF11471_consen 27 PLTIEQRLAALEQRLQAAEQRAQ 49 (60)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999998877654
No 8
>PRK11820 hypothetical protein; Provisional
Probab=40.75 E-value=75 Score=28.54 Aligned_cols=19 Identities=32% Similarity=0.599 Sum_probs=13.4
Q ss_pred hhhhhhhhHHHHHHHHHhc
Q 029563 13 LVSRLDHLESIMKDLERKQ 31 (191)
Q Consensus 13 iLsRLDRLD~~Lr~LEe~r 31 (191)
|+.|||.|...+..+|+..
T Consensus 157 l~~rl~~i~~~~~~i~~~~ 175 (288)
T PRK11820 157 LLQRLDAIEALVAKIEALA 175 (288)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5677777777777776654
No 9
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=40.62 E-value=76 Score=28.54 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=14.3
Q ss_pred hhhhhhhhHHHHHHHHHhc
Q 029563 13 LVSRLDHLESIMKDLERKQ 31 (191)
Q Consensus 13 iLsRLDRLD~~Lr~LEe~r 31 (191)
|+.|||.|...+..+++..
T Consensus 159 l~~rl~~i~~~v~~i~~~~ 177 (291)
T TIGR00255 159 IVQRLDLIEREVKKVRSAM 177 (291)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5678888888888777754
No 10
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=38.95 E-value=1.6e+02 Score=21.89 Aligned_cols=65 Identities=18% Similarity=0.198 Sum_probs=33.5
Q ss_pred chhhhhhhhHHHHHHHHHhcccccCCCCCCCchhhccccCHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Q 029563 12 PLVSRLDHLESIMKDLERKQNLAKWGCNSNNSERQRQHLPLNLAAREAYFKGSLLDRVASLENRLFQLCLE 82 (191)
Q Consensus 12 PiLsRLDRLD~~Lr~LEe~r~~~k~~~~sa~~~~e~qcrpl~~ALeEvq~KGSLmDRLa~LE~RllqL~~E 82 (191)
-|..+||-||-++..-........... +.+.+..+-.. +=.++.-..+..-++.|+.++.+++.+
T Consensus 31 ~v~~kLneLd~Li~eA~~r~~~~~~~~-----~~~~~~l~P~~-~i~a~l~~~~~~~~~~L~~~l~~l~~e 95 (109)
T PF03980_consen 31 DVVEKLNELDKLIEEAKERKNSGEREK-----PVWRHSLTPEE-DIRAHLAPYKKKEREQLNARLQELEEE 95 (109)
T ss_pred hHHHHHHHHHHHHHHHHHhHhccccCC-----CCCCCCCChHH-HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999988776554322110 11122222222 223444444555555555555555544
No 11
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=37.40 E-value=55 Score=26.62 Aligned_cols=34 Identities=21% Similarity=0.173 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhccHH---------HHHHHHHHHHHHHHHHhhc
Q 029563 52 LNLAAREAYFKGSLL---------DRVASLENRLFQLCLELES 85 (191)
Q Consensus 52 l~~ALeEvq~KGSLm---------DRLa~LE~RllqL~~ELe~ 85 (191)
+..+|.+|...|+|= ++++.||.||..|...|..
T Consensus 28 ~~~~i~~Ar~~GDlsENaeY~aak~~~~~le~rI~~L~~~L~~ 70 (156)
T TIGR01461 28 VTQKVTWAASLGDRSENADYQYGKKRLREIDRRVRFLTKRLEN 70 (156)
T ss_pred HHHHHHHHHHcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356778888888866 4899999999999988874
No 12
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=34.07 E-value=14 Score=37.01 Aligned_cols=45 Identities=27% Similarity=0.400 Sum_probs=27.2
Q ss_pred cchhhhhHHHHHHHhhCCChhhhcCCCCCCcchhhhcCCCcccCCCCCc
Q 029563 137 SENQGKYWKKVQQRRKQPSPIKQRGKSKINRDEKTCNRGKTRVSSNWPH 185 (191)
Q Consensus 137 ~e~~~k~~~~~~q~~k~~~p~kq~gk~~~~~~~~~c~~~kk~~~p~wp~ 185 (191)
+..++.+. +-+.+++.+++.|..+|-+ ..+++ |+|||.+-||=|.
T Consensus 493 ~~~eg~S~-~~~k~~~~~kk~K~ek~~k--~~~~~-k~~kk~kdpnapk 537 (615)
T KOG0526|consen 493 SDEEGDSD-EPKKERSSEKKPKREKKEK--EKEKK-KKGKKKKDPNAPK 537 (615)
T ss_pred ccccCCcc-cccccccccccchhhhHhh--hhccc-cCcccCCCCCCCc
Confidence 34446663 4455555555544444444 45555 8999999998774
No 13
>PF03449 GreA_GreB_N: Transcription elongation factor, N-terminal; InterPro: IPR022691 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A 2ETN_C 2P4V_B.
Probab=33.75 E-value=79 Score=23.02 Aligned_cols=33 Identities=33% Similarity=0.310 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhccH---------HHHHHHHHHHHHHHHHHhh
Q 029563 52 LNLAAREAYFKGSL---------LDRVASLENRLFQLCLELE 84 (191)
Q Consensus 52 l~~ALeEvq~KGSL---------mDRLa~LE~RllqL~~ELe 84 (191)
+...|.+|...|+| -++.+.||.||..|...|.
T Consensus 29 ~~~~i~~Ar~~GDlsENaeY~aAke~q~~le~rI~~Le~~l~ 70 (74)
T PF03449_consen 29 IAEEIAEAREQGDLSENAEYHAAKERQAFLEARIRELEERLA 70 (74)
T ss_dssp HHHHHHHHHCCSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34677778888866 5788999999999987764
No 14
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=33.23 E-value=80 Score=25.15 Aligned_cols=37 Identities=22% Similarity=0.155 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhccHHH---------HHHHHHHHHHHHHHHhhcCCC
Q 029563 52 LNLAAREAYFKGSLLD---------RVASLENRLFQLCLELESSST 88 (191)
Q Consensus 52 l~~ALeEvq~KGSLmD---------RLa~LE~RllqL~~ELe~~~~ 88 (191)
+...+.++..-|+|-| +.+.+|.|+.+|..+|+...-
T Consensus 25 ~~~~~~~a~~~gDl~Ena~y~aak~~~~~~e~ri~~L~~~L~~a~i 70 (151)
T TIGR01462 25 ISEEIAEAREHGDLSENAEYHAAKEEQGFNEGRIAELEDLLANAQV 70 (151)
T ss_pred HHHHHHHHHHCCChhhccchHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 3456788888888844 889999999999999875544
No 15
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=32.10 E-value=1.2e+02 Score=27.54 Aligned_cols=23 Identities=39% Similarity=0.393 Sum_probs=20.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhc
Q 029563 63 GSLLDRVASLENRLFQLCLELES 85 (191)
Q Consensus 63 GSLmDRLa~LE~RllqL~~ELe~ 85 (191)
-..+-|++.||.||..|+.-|..
T Consensus 205 ~~~la~~a~LE~RL~~LE~~lG~ 227 (388)
T PF04912_consen 205 SQQLARAADLEKRLARLESALGI 227 (388)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCC
Confidence 35678999999999999998887
No 16
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=31.78 E-value=78 Score=25.89 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=27.1
Q ss_pred HHHHHHHHhhccHHH---------HHHHHHHHHHHHHHHhhc
Q 029563 53 NLAAREAYFKGSLLD---------RVASLENRLFQLCLELES 85 (191)
Q Consensus 53 ~~ALeEvq~KGSLmD---------RLa~LE~RllqL~~ELe~ 85 (191)
..++.+|...|.|=| +++.+|.||.+|..-|..
T Consensus 31 ~~~i~~Ar~~GDlsENaey~aak~~q~~~e~RI~~L~~~L~~ 72 (158)
T PRK05892 31 AVEVNDRGMIGDHGDQAEAIQRADELARLDDRINELDRRLRT 72 (158)
T ss_pred HHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788888888854 899999999999988874
No 17
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=31.32 E-value=44 Score=24.30 Aligned_cols=20 Identities=35% Similarity=0.436 Sum_probs=16.3
Q ss_pred hhccHHHHHHHHHHHHHHHH
Q 029563 61 FKGSLLDRVASLENRLFQLC 80 (191)
Q Consensus 61 ~KGSLmDRLa~LE~RllqL~ 80 (191)
+==+|+|||..|+.++..|.
T Consensus 64 lil~LLd~i~~L~~el~~L~ 83 (84)
T PF13591_consen 64 LILDLLDRIEQLRRELRELR 83 (84)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33479999999999998773
No 18
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=31.15 E-value=88 Score=25.79 Aligned_cols=32 Identities=16% Similarity=-0.002 Sum_probs=26.6
Q ss_pred HHHHHHHhhccHHH---HHHHHHHHHHHHHHHhhc
Q 029563 54 LAAREAYFKGSLLD---RVASLENRLFQLCLELES 85 (191)
Q Consensus 54 ~ALeEvq~KGSLmD---RLa~LE~RllqL~~ELe~ 85 (191)
.++.+|..-|+|=| +++.+|.||.+|...|..
T Consensus 48 ~~i~~Ar~~GDlsEak~~~~~~e~rI~~L~~~L~~ 82 (160)
T PRK06342 48 AAYEAAQAIEDVNERRRQMARPLRDLRYLAARRRT 82 (160)
T ss_pred HHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 46888888888876 889999999999988764
No 19
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=29.58 E-value=75 Score=32.24 Aligned_cols=29 Identities=24% Similarity=0.241 Sum_probs=23.3
Q ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHhhc
Q 029563 57 REAYFKGSLLDRVASLENRLFQLCLELES 85 (191)
Q Consensus 57 eEvq~KGSLmDRLa~LE~RllqL~~ELe~ 85 (191)
.|...|=|+|.||+.+|.+|.+|..-||.
T Consensus 559 ~~~~~~~Sm~~Rl~~vEkqv~~le~Kld~ 587 (654)
T KOG1419|consen 559 SEIPEKLSMMGRLVKVEKQVQSLEKKLDL 587 (654)
T ss_pred cccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 34556779999999999999998877654
No 20
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=28.71 E-value=2.1e+02 Score=20.59 Aligned_cols=36 Identities=22% Similarity=0.197 Sum_probs=29.9
Q ss_pred CHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhcC
Q 029563 51 PLNLAAREAYFKGSLLDRVASLENRLFQLCLELESS 86 (191)
Q Consensus 51 pl~~ALeEvq~KGSLmDRLa~LE~RllqL~~ELe~~ 86 (191)
.++....=+..|-.|+++|+.+|....++...+...
T Consensus 35 d~~~l~~~~~~k~~l~~~l~~le~~r~~~~~~~~~~ 70 (143)
T PF05130_consen 35 DIDELEELVEEKQELLEELRELEKQRQQLLAKLGAE 70 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 556777778889999999999999999999888766
No 21
>TIGR01674 phage_lambda_G phage minor tail protein G. This model describes a family of bacteriophage proteins including G of phage lambda. This protein has been described as undergoing a translational frameshift at a Gly-Lys dipeptide near the C-terminus of protein G from phage lambda, with about 4 % efficiency, to produce tail assembly protein G-T. The Lys of the Gly-Lys pair is the conserved second-to-last residue of seed alignment for this family.
Probab=28.69 E-value=36 Score=28.44 Aligned_cols=73 Identities=12% Similarity=0.145 Sum_probs=42.6
Q ss_pred CCCcchhhhhhhhHHHHHHHHHhcccccCC--CC-------------C---CCchhhccccCHHHHHHHHHhh---ccHH
Q 029563 8 SISVPLVSRLDHLESIMKDLERKQNLAKWG--CN-------------S---NNSERQRQHLPLNLAAREAYFK---GSLL 66 (191)
Q Consensus 8 ~s~~PiLsRLDRLD~~Lr~LEe~r~~~k~~--~~-------------s---a~~~~e~qcrpl~~ALeEvq~K---GSLm 66 (191)
++.++-|.|+|+|+++=++.|.--..++-. .. . .|+..-.+ -.+++++++.|.- +==-
T Consensus 17 LsELSALQRieyL~flk~~a~q~~~~~~~~~~~~~~~~~~~~~vam~~~~~lv~~sl~~-~~~~~~v~~i~qeV~~tWp~ 95 (138)
T TIGR01674 17 LFELSALQRIEHLEFLKRQTEKVEVDSDFQAEAEFTVRSGAYLVAMSLWHWHPSKSLQN-ENASQDVATIQQEVMTTWPT 95 (138)
T ss_pred ehhhhHHHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHhhhhhHHHhcc-CchHHHHHHHHHHHHhhCCH
Confidence 678899999999999998887765543110 00 0 01110011 2334555444432 2224
Q ss_pred HHHHHHHHHHHHHHH
Q 029563 67 DRVASLENRLFQLCL 81 (191)
Q Consensus 67 DRLa~LE~RllqL~~ 81 (191)
|=|+.=|++|+.|+=
T Consensus 96 eAl~~a~~~Vl~LSG 110 (138)
T TIGR01674 96 EALAAAEEKVLLLSG 110 (138)
T ss_pred HHHHHHHHHHHHhhc
Confidence 678888999998874
No 22
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=28.43 E-value=65 Score=25.16 Aligned_cols=20 Identities=45% Similarity=0.514 Sum_probs=12.7
Q ss_pred ccHHHHHHHHHHHHHHHHHH
Q 029563 63 GSLLDRVASLENRLFQLCLE 82 (191)
Q Consensus 63 GSLmDRLa~LE~RllqL~~E 82 (191)
-.|.|+|+.||..|.+|..+
T Consensus 4 ~~l~~~l~~le~~l~~l~~~ 23 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEE 23 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666555
No 23
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=27.53 E-value=69 Score=24.15 Aligned_cols=21 Identities=33% Similarity=0.297 Sum_probs=17.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHh
Q 029563 63 GSLLDRVASLENRLFQLCLEL 83 (191)
Q Consensus 63 GSLmDRLa~LE~RllqL~~EL 83 (191)
=+|+|||..|+.++..|.-.|
T Consensus 74 l~LLd~i~~Lr~el~~L~~~l 94 (101)
T PRK10265 74 LTLLDEIAHLKQENRLLRQRL 94 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 379999999999998886654
No 24
>PF06894 Phage_lambd_GpG: Bacteriophage lambda minor tail protein (GpG); InterPro: IPR010027 This entry is represented by Bacteriophage lambda, GpG, a minor tail protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry identifies a family of bacteriophage proteins including G of phage lambda. This protein has been described as undergoing a translational frameshift at a Gly-Lys dipeptide near the C terminus of protein G from phage lambda, with about 4% efficiency, to produce tail assembly protein G-T.
Probab=27.01 E-value=37 Score=27.41 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=20.0
Q ss_pred CCCCcchhhhhhhhHHHHHHHHHh
Q 029563 7 PSISVPLVSRLDHLESIMKDLERK 30 (191)
Q Consensus 7 ~~s~~PiLsRLDRLD~~Lr~LEe~ 30 (191)
.++.++=|.|||.||++.+.+++-
T Consensus 16 ~LsELSALqRieyley~~~~~~~~ 39 (127)
T PF06894_consen 16 TLSELSALQRIEYLEYMKERAEQP 39 (127)
T ss_pred EeehhhHHHHHHHHHHHhhhHhhc
Confidence 357888999999999999877764
No 25
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=26.96 E-value=1.1e+02 Score=24.48 Aligned_cols=36 Identities=25% Similarity=0.231 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhccHHH---------HHHHHHHHHHHHHHHhhcCC
Q 029563 52 LNLAAREAYFKGSLLD---------RVASLENRLFQLCLELESSS 87 (191)
Q Consensus 52 l~~ALeEvq~KGSLmD---------RLa~LE~RllqL~~ELe~~~ 87 (191)
+..++.+|..-|+|-| +..+||.||.+|..+|..-.
T Consensus 30 ~~~~~~~A~~~gdl~En~~y~~a~~~~~~~~~ri~~l~~~L~~a~ 74 (157)
T PRK00226 30 IIEAIAEAREHGDLSENAEYHAAKEEQGFIEGRIRELEDKLSNAE 74 (157)
T ss_pred HHHHHHHHHHcCCccccccchHHHHHHHHHHHHHHHHHHHHHhCe
Confidence 3467777888888754 66888999999998887544
No 26
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=25.79 E-value=1.4e+02 Score=31.23 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=16.1
Q ss_pred hhhhhhhHHHHHHHHHhcc
Q 029563 14 VSRLDHLESIMKDLERKQN 32 (191)
Q Consensus 14 LsRLDRLD~~Lr~LEe~r~ 32 (191)
+.|.|-++..|||||+.-.
T Consensus 55 vrRcdemeRklrfl~~ei~ 73 (829)
T KOG2189|consen 55 VRRCDEMERKLRFLESEIK 73 (829)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999643
No 27
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=25.69 E-value=1.1e+02 Score=24.94 Aligned_cols=33 Identities=21% Similarity=0.182 Sum_probs=26.3
Q ss_pred HHHHHHHHhhccHHH---------HHHHHHHHHHHHHHHhhc
Q 029563 53 NLAAREAYFKGSLLD---------RVASLENRLFQLCLELES 85 (191)
Q Consensus 53 ~~ALeEvq~KGSLmD---------RLa~LE~RllqL~~ELe~ 85 (191)
..++.+|..-|+|=| +.+.||.||..|...|..
T Consensus 31 ~~~i~~Ar~~GDl~ENaeY~aAk~~~~~~e~rI~~L~~~L~~ 72 (157)
T PRK01885 31 TQKVSWAASLGDRSENADYIYGKKRLREIDRRVRFLTKRLEN 72 (157)
T ss_pred HHHHHHHHHcCCcchhhcHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 466778888887765 779999999999988863
No 28
>TIGR01748 rhaA L-rhamnose isomerase. This enzyme interconverts L-rhamnose and L-rhamnulose. In some species, including E. coli, this is the first step in rhamnose catabolism. Sequential steps are catalyzed by rhamnulose kinase (rhaB), then rhamnulose-1-phosphate aldolase (rhaD) to yield glycerone phosphate and (S)-lactaldehyde. Characterization of this family is based on members in E. coli and Salmonella.
Probab=24.33 E-value=72 Score=30.80 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=19.7
Q ss_pred HHHHHHHhhccHHHHHHHHHH
Q 029563 54 LAAREAYFKGSLLDRVASLEN 74 (191)
Q Consensus 54 ~ALeEvq~KGSLmDRLa~LE~ 74 (191)
++|+++|..|..+.|||.+|.
T Consensus 354 ~~L~~~q~~gD~~~rla~~ee 374 (414)
T TIGR01748 354 AELKKLEAEGDYTARLALLEE 374 (414)
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 689999999999999999986
No 29
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=23.69 E-value=90 Score=24.71 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=12.1
Q ss_pred ccHHHHHHHHHHHHHHHHHH
Q 029563 63 GSLLDRVASLENRLFQLCLE 82 (191)
Q Consensus 63 GSLmDRLa~LE~RllqL~~E 82 (191)
-.|.|+|+.||..|-+|..+
T Consensus 4 ~elfd~l~~le~~l~~l~~e 23 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKE 23 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666655554
No 30
>PRK01076 L-rhamnose isomerase; Provisional
Probab=23.17 E-value=78 Score=30.60 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=19.6
Q ss_pred HHHHHHHhhccHHHHHHHHHH
Q 029563 54 LAAREAYFKGSLLDRVASLEN 74 (191)
Q Consensus 54 ~ALeEvq~KGSLmDRLa~LE~ 74 (191)
++|+++|..|..+.|||.+|.
T Consensus 358 ~~L~~~q~~gD~~~rla~~ee 378 (419)
T PRK01076 358 DQLRKLELEGDYTARLALLEE 378 (419)
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 689999999999999999985
No 31
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=22.75 E-value=1.4e+02 Score=20.68 Aligned_cols=12 Identities=50% Similarity=0.775 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHH
Q 029563 65 LLDRVASLENRL 76 (191)
Q Consensus 65 LmDRLa~LE~Rl 76 (191)
+-.||+.||+|+
T Consensus 35 vs~RLe~LEn~~ 46 (47)
T PF10393_consen 35 VSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 445666666665
No 32
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=22.57 E-value=1.1e+02 Score=22.41 Aligned_cols=26 Identities=35% Similarity=0.303 Sum_probs=20.2
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHH
Q 029563 54 LAAREAYFKGSLLDRVASLENRLFQLCLE 82 (191)
Q Consensus 54 ~ALeEvq~KGSLmDRLa~LE~RllqL~~E 82 (191)
.+-+||++ |=++|+-|+.|+.+|..|
T Consensus 11 AVrEEVev---LK~~I~eL~~~n~~Le~E 36 (59)
T PF01166_consen 11 AVREEVEV---LKEQIAELEERNSQLEEE 36 (59)
T ss_dssp T-TTSHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 34556664 789999999999999887
No 33
>KOG1333 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.19 E-value=75 Score=28.66 Aligned_cols=43 Identities=19% Similarity=0.190 Sum_probs=37.2
Q ss_pred ccccCHH---HHHHHHHhhccHHHHHHHHHHHHHHHHHHhhcCCCC
Q 029563 47 RQHLPLN---LAAREAYFKGSLLDRVASLENRLFQLCLELESSSTY 89 (191)
Q Consensus 47 ~qcrpl~---~ALeEvq~KGSLmDRLa~LE~RllqL~~ELe~~~~s 89 (191)
-+|.|-+ .+.+|++.--++-|-.+.|++||+-|..|+.-.-+.
T Consensus 167 ~qc~p~pvi~~~~~e~ar~~~~~e~n~~lr~~~~~lq~e~~~~t~~ 212 (241)
T KOG1333|consen 167 FQCMPVPVILNFDAECQRTNQVQEENEVLRQKLFALQAEIHRLKKE 212 (241)
T ss_pred HHcCCcceeehHHHHHhcccccchhhHHHHHHHHHHHHHHHHhhhc
Confidence 4788865 788999999999999999999999999998766655
No 34
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=20.86 E-value=1.3e+02 Score=24.94 Aligned_cols=68 Identities=21% Similarity=0.250 Sum_probs=41.7
Q ss_pred hhhhhhhhHHHHHHHHHhccc-cc-CCCCCCCch---hhccccCHHHHHH---HHHhhccHHH-HHHHHHHHHHHHH
Q 029563 13 LVSRLDHLESIMKDLERKQNL-AK-WGCNSNNSE---RQRQHLPLNLAAR---EAYFKGSLLD-RVASLENRLFQLC 80 (191)
Q Consensus 13 iLsRLDRLD~~Lr~LEe~r~~-~k-~~~~sa~~~---~e~qcrpl~~ALe---Evq~KGSLmD-RLa~LE~RllqL~ 80 (191)
.+.+||.|...|-.||+++|. -. |-=.+++=. .-.+..|+++-|+ +....|.... -+..+|+|+-+|-
T Consensus 64 ~~~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~i~q~l~~~~P~Ee~Lrql~~~~~~~~~~~a~l~qi~~~l~~Ll 140 (148)
T PF12486_consen 64 GMTQLQQLADRLNQLEEQRGKYMTISELKTAVYQIQQSLNQSVPLEEQLRQLQQQKEQGQPPSALLKQIDNRLNQLL 140 (148)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 467999999999999998864 31 111111001 1135677776554 4555676553 5677777777764
No 35
>KOG3958 consensus Putative dynamitin [Cytoskeleton]
Probab=20.76 E-value=3.7e+02 Score=25.69 Aligned_cols=73 Identities=18% Similarity=0.085 Sum_probs=52.4
Q ss_pred cchhhhhhhhHHHHHHHHHhcccccCCCCCCCchhhccccCHHHHHHHHHhhccHHH--HHHHHHHHHHHHHHHhhc
Q 029563 11 VPLVSRLDHLESIMKDLERKQNLAKWGCNSNNSERQRQHLPLNLAAREAYFKGSLLD--RVASLENRLFQLCLELES 85 (191)
Q Consensus 11 ~PiLsRLDRLD~~Lr~LEe~r~~~k~~~~sa~~~~e~qcrpl~~ALeEvq~KGSLmD--RLa~LE~RllqL~~ELe~ 85 (191)
+.--+|+--|+..|..||.--+|---+-+.. +..-+.-++-++++..+.|-+++| -|..+|.||--|---|+.
T Consensus 187 ~s~~akVA~LE~Rlt~lE~vvg~~~d~~~~l--sa~~~~a~vletVe~L~~k~s~l~~~~ld~vEqRL~s~lgK~~~ 261 (371)
T KOG3958|consen 187 FSQAAKVAELEKRLTELETVVGCDQDAQNPL--SAGLQGACVLETVELLQAKVSALDLAVLDQVEQRLQSVLGKVNE 261 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccCch--hhccCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Confidence 4456888899999999998766632222222 223355577899999999999975 689999999877666554
No 36
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=20.31 E-value=3.6e+02 Score=24.93 Aligned_cols=19 Identities=32% Similarity=0.232 Sum_probs=14.3
Q ss_pred HhhccHHHHHHHHHHHHHH
Q 029563 60 YFKGSLLDRVASLENRLFQ 78 (191)
Q Consensus 60 q~KGSLmDRLa~LE~Rllq 78 (191)
..|-.|+||+..|=.|+++
T Consensus 83 ~~~~~l~d~~~~l~~Rh~~ 101 (271)
T COG5034 83 KEKSDLADRAEKLLRRHRK 101 (271)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566888888887777776
No 37
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=20.01 E-value=1.3e+02 Score=28.47 Aligned_cols=25 Identities=36% Similarity=0.256 Sum_probs=16.8
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHH
Q 029563 54 LAAREAYFKGSLLDRVASLENRLFQ 78 (191)
Q Consensus 54 ~ALeEvq~KGSLmDRLa~LE~Rllq 78 (191)
.|--|+|.|--|--||..||+.|..
T Consensus 137 tAkaEaQLkeK~klRLK~LEe~Lk~ 161 (351)
T PF07058_consen 137 TAKAEAQLKEKLKLRLKVLEEGLKG 161 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccC
Confidence 4555777777777777777776653
Done!