Query 029563
Match_columns 191
No_of_seqs 25 out of 27
Neff 2.7
Searched_HMMs 29240
Date Tue Mar 26 00:42:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029563.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029563hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pyi_A Protein (pyrimidine pat 55.7 7.3 0.00025 26.7 2.5 19 64-82 52-70 (96)
2 2p4v_A Transcription elongatio 54.2 17 0.00057 28.4 4.6 34 52-85 29-71 (158)
3 1dip_A Delta-sleep-inducing pe 53.2 23 0.00079 26.1 4.9 25 55-82 13-37 (78)
4 1zme_C Proline utilization tra 46.9 16 0.00056 23.5 3.0 21 64-84 48-68 (70)
5 2er8_A Regulatory protein Leu3 42.0 20 0.00067 23.4 2.8 21 65-85 47-67 (72)
6 1pyi_A Protein (pyrimidine pat 36.8 60 0.002 22.0 4.7 23 67-89 48-70 (96)
7 2f23_A Anti-cleavage anti-GREA 36.2 39 0.0013 25.9 4.1 34 52-85 29-71 (156)
8 2pnv_A Small conductance calci 33.9 36 0.0012 22.2 3.0 22 63-84 19-40 (43)
9 2oxj_A Hybrid alpha/beta pepti 33.9 16 0.00056 23.2 1.3 15 67-81 1-15 (34)
10 3efd_K KCSA; helix bundle, C-t 30.1 41 0.0014 20.8 2.6 23 54-76 3-27 (30)
11 2lm9_A BLO T 21 allergen; DUST 27.8 44 0.0015 25.4 3.0 24 64-87 2-25 (96)
12 3swf_A CGMP-gated cation chann 26.9 1.8E+02 0.0061 21.0 6.8 51 15-85 7-57 (74)
13 1grj_A GREA protein; transcrip 26.4 87 0.003 24.1 4.6 34 52-85 29-71 (158)
14 1kd8_B GABH BLL, GCN4 acid bas 25.1 28 0.00097 22.4 1.3 16 67-82 1-16 (36)
15 1hwt_C Protein (heme activator 25.0 16 0.00055 24.2 0.1 18 67-84 58-75 (81)
16 2ovc_A Potassium voltage-gated 24.2 72 0.0025 19.9 3.0 23 63-85 6-28 (33)
17 3c3f_A Alpha/beta peptide with 24.0 31 0.001 22.0 1.3 15 67-81 1-15 (34)
18 1d66_A Protein (GAL4); protein 21.4 30 0.001 21.8 0.8 15 66-80 51-65 (66)
19 2bni_A General control protein 21.0 35 0.0012 21.7 1.1 14 67-80 1-14 (34)
20 3coq_A Regulatory protein GAL4 20.6 63 0.0021 21.5 2.4 18 64-81 49-66 (89)
21 1vp7_A Exodeoxyribonuclease VI 20.5 2.2E+02 0.0075 21.3 5.6 53 10-80 29-85 (100)
No 1
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=55.74 E-value=7.3 Score=26.74 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=12.4
Q ss_pred cHHHHHHHHHHHHHHHHHH
Q 029563 64 SLLDRVASLENRLFQLCLE 82 (191)
Q Consensus 64 SLmDRLa~LE~RllqL~~E 82 (191)
.|-+||+.||..|.++..+
T Consensus 52 ~Le~rl~~le~~l~~~~~~ 70 (96)
T 1pyi_A 52 FLEDRLAVMMRVLKEYGVD 70 (96)
T ss_dssp HHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 3667777777777665443
No 2
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=54.19 E-value=17 Score=28.37 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhccH---------HHHHHHHHHHHHHHHHHhhc
Q 029563 52 LNLAAREAYFKGSL---------LDRVASLENRLFQLCLELES 85 (191)
Q Consensus 52 l~~ALeEvq~KGSL---------mDRLa~LE~RllqL~~ELe~ 85 (191)
+..++.+|...|+| -+|++.+|.||..|...|..
T Consensus 29 i~~~i~~Ar~~GDlsENaeY~aak~~q~~~e~rI~~L~~~L~~ 71 (158)
T 2p4v_A 29 VTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMEN 71 (158)
T ss_dssp HHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35788889999987 67999999999999998853
No 3
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=53.25 E-value=23 Score=26.06 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=18.8
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHH
Q 029563 55 AAREAYFKGSLLDRVASLENRLFQLCLE 82 (191)
Q Consensus 55 ALeEvq~KGSLmDRLa~LE~RllqL~~E 82 (191)
+.+||++ |=++|..||.|+.+|+.|
T Consensus 13 VREEVev---LKe~I~EL~e~~~qLE~E 37 (78)
T 1dip_A 13 VREEVEI---LKEQIRELVEKNSQLERE 37 (78)
T ss_dssp CTTSCHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3344543 678999999999998887
No 4
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=46.86 E-value=16 Score=23.52 Aligned_cols=21 Identities=14% Similarity=-0.034 Sum_probs=16.5
Q ss_pred cHHHHHHHHHHHHHHHHHHhh
Q 029563 64 SLLDRVASLENRLFQLCLELE 84 (191)
Q Consensus 64 SLmDRLa~LE~RllqL~~ELe 84 (191)
.|-+||+.||..|.+|...|.
T Consensus 48 ~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 48 QLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 477888888888888876654
No 5
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=41.97 E-value=20 Score=23.39 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 029563 65 LLDRVASLENRLFQLCLELES 85 (191)
Q Consensus 65 LmDRLa~LE~RllqL~~ELe~ 85 (191)
.-.+|+.||.||..|...|..
T Consensus 47 ~~~~~~~Le~ri~~Le~~l~~ 67 (72)
T 2er8_A 47 KRARNEAIEKRFKELTRTLTN 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 347888888888888887764
No 6
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=36.78 E-value=60 Score=22.02 Aligned_cols=23 Identities=26% Similarity=0.156 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC
Q 029563 67 DRVASLENRLFQLCLELESSSTY 89 (191)
Q Consensus 67 DRLa~LE~RllqL~~ELe~~~~s 89 (191)
..+..||.||.+|+..|..-...
T Consensus 48 ~~~~~Le~rl~~le~~l~~~~~~ 70 (96)
T 1pyi_A 48 SYVFFLEDRLAVMMRVLKEYGVD 70 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC
Confidence 47899999999999988765443
No 7
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=36.22 E-value=39 Score=25.93 Aligned_cols=34 Identities=18% Similarity=-0.004 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhccH---------HHHHHHHHHHHHHHHHHhhc
Q 029563 52 LNLAAREAYFKGSL---------LDRVASLENRLFQLCLELES 85 (191)
Q Consensus 52 l~~ALeEvq~KGSL---------mDRLa~LE~RllqL~~ELe~ 85 (191)
+..++.||..-|+| =++.+.||.||.+|..+|..
T Consensus 29 ~~~~i~~A~~~GDlsEnaey~aak~~q~~~e~ri~~L~~~L~~ 71 (156)
T 2f23_A 29 ATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDILSR 71 (156)
T ss_dssp HHHHHHHHHTCSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34677788888877 35788888888888888765
No 8
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=33.91 E-value=36 Score=22.20 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=16.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHhh
Q 029563 63 GSLLDRVASLENRLFQLCLELE 84 (191)
Q Consensus 63 GSLmDRLa~LE~RllqL~~ELe 84 (191)
..|=+||..||.||..|-..|.
T Consensus 19 e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 19 EDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999988877654
No 9
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=33.85 E-value=16 Score=23.23 Aligned_cols=15 Identities=27% Similarity=0.496 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHH
Q 029563 67 DRVASLENRLFQLCL 81 (191)
Q Consensus 67 DRLa~LE~RllqL~~ 81 (191)
+|.++||+||-.|--
T Consensus 1 eRMnQLE~kVEeLl~ 15 (34)
T 2oxj_A 1 XRMXQLEXKVXELLX 15 (34)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH
Confidence 588999999887743
No 10
>3efd_K KCSA; helix bundle, C-terminus, immune system; 2.60A {Escherichia coli}
Probab=30.07 E-value=41 Score=20.80 Aligned_cols=23 Identities=43% Similarity=0.533 Sum_probs=17.0
Q ss_pred HHHHHHHhhc--cHHHHHHHHHHHH
Q 029563 54 LAAREAYFKG--SLLDRVASLENRL 76 (191)
Q Consensus 54 ~ALeEvq~KG--SLmDRLa~LE~Rl 76 (191)
.|.+|++..- -|-+|..-||.+|
T Consensus 3 ~Aa~eay~~atRALHeRFDRLEr~l 27 (30)
T 3efd_K 3 KAAEEAYTRTTRALHERFDRLERML 27 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667777655 4788888888876
No 11
>2lm9_A BLO T 21 allergen; DUST mite; NMR {Blomia tropicalis}
Probab=27.83 E-value=44 Score=25.38 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=20.7
Q ss_pred cHHHHHHHHHHHHHHHHHHhhcCC
Q 029563 64 SLLDRVASLENRLFQLCLELESSS 87 (191)
Q Consensus 64 SLmDRLa~LE~RllqL~~ELe~~~ 87 (191)
++|+|++.+|..|+.|+.|+..=.
T Consensus 2 t~~~~~~~~E~~Ll~Ls~Qi~~LE 25 (96)
T 2lm9_A 2 TATQRFHEIEKFLLHITHEVDDLE 25 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999976433
No 12
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=26.92 E-value=1.8e+02 Score=20.97 Aligned_cols=51 Identities=20% Similarity=0.163 Sum_probs=34.4
Q ss_pred hhhhhhHHHHHHHHHhcccccCCCCCCCchhhccccCHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhc
Q 029563 15 SRLDHLESIMKDLERKQNLAKWGCNSNNSERQRQHLPLNLAAREAYFKGSLLDRVASLENRLFQLCLELES 85 (191)
Q Consensus 15 sRLDRLD~~Lr~LEe~r~~~k~~~~sa~~~~e~qcrpl~~ALeEvq~KGSLmDRLa~LE~RllqL~~ELe~ 85 (191)
-+|+||+..|..|--+- .-..-+-.-....|.-||..||.+|..+..+..+
T Consensus 7 EKv~~LE~sld~LQTrf--------------------ARLLaEy~ssQ~KLKqRit~LE~~~~~~~~~~~s 57 (74)
T 3swf_A 7 EKVTRMESSVDLLQTRF--------------------ARILAEYESMQQKLKQRLTKVEKFLKPLIDTEFS 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchh
Confidence 46677777766665543 1223344455677999999999999997766543
No 13
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=26.41 E-value=87 Score=24.11 Aligned_cols=34 Identities=24% Similarity=0.223 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhccHH---------HHHHHHHHHHHHHHHHhhc
Q 029563 52 LNLAAREAYFKGSLL---------DRVASLENRLFQLCLELES 85 (191)
Q Consensus 52 l~~ALeEvq~KGSLm---------DRLa~LE~RllqL~~ELe~ 85 (191)
+-.++.+|...|+|- ++.+++|.|+.+|..+|+.
T Consensus 29 i~~~i~~A~~~gDlsENaeY~aak~~q~~~e~ri~~Le~~L~~ 71 (158)
T 1grj_A 29 IIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLSN 71 (158)
T ss_dssp HHHHHHHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHhcccccccchhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 356778888888864 5688999999999988864
No 14
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=25.07 E-value=28 Score=22.35 Aligned_cols=16 Identities=19% Similarity=0.291 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 029563 67 DRVASLENRLFQLCLE 82 (191)
Q Consensus 67 DRLa~LE~RllqL~~E 82 (191)
+|+++||++|-.|-.+
T Consensus 1 eRMnQLE~KVEeLl~~ 16 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSK 16 (36)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHH
Confidence 5788999998877543
No 15
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=24.97 E-value=16 Score=24.21 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 029563 67 DRVASLENRLFQLCLELE 84 (191)
Q Consensus 67 DRLa~LE~RllqL~~ELe 84 (191)
+.|+.||+||.+|+..|.
T Consensus 58 ~~~~~L~~ri~~LE~~l~ 75 (81)
T 1hwt_C 58 NELKKLRERVKSLEKTLS 75 (81)
T ss_dssp HHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445566666666655443
No 16
>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}
Probab=24.20 E-value=72 Score=19.86 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=19.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhc
Q 029563 63 GSLLDRVASLENRLFQLCLELES 85 (191)
Q Consensus 63 GSLmDRLa~LE~RllqL~~ELe~ 85 (191)
=|++-||.-+|..|..|..-||.
T Consensus 6 ~Sm~~Rl~kVE~qv~~md~KLd~ 28 (33)
T 2ovc_A 6 ISMMGRVVKVEKQVQSIEHKLDL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999988877663
No 17
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=24.02 E-value=31 Score=21.95 Aligned_cols=15 Identities=20% Similarity=0.324 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHH
Q 029563 67 DRVASLENRLFQLCL 81 (191)
Q Consensus 67 DRLa~LE~RllqL~~ 81 (191)
+|.++||++|-.|-.
T Consensus 1 eRMnQLEdKVEeLl~ 15 (34)
T 3c3f_A 1 XRMXQIEXKLEXILS 15 (34)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHh
Confidence 588899999887754
No 18
>1d66_A Protein (GAL4); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.70A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1aw6_A
Probab=21.38 E-value=30 Score=21.83 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHH
Q 029563 66 LDRVASLENRLFQLC 80 (191)
Q Consensus 66 mDRLa~LE~RllqL~ 80 (191)
-..|..||.||.+|+
T Consensus 51 ~~~~~~Le~rl~~LE 65 (66)
T 1d66_A 51 RAHLTEVESRLERLE 65 (66)
T ss_dssp HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHc
Confidence 467888899988775
No 19
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=21.02 E-value=35 Score=21.67 Aligned_cols=14 Identities=21% Similarity=0.501 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHH
Q 029563 67 DRVASLENRLFQLC 80 (191)
Q Consensus 67 DRLa~LE~RllqL~ 80 (191)
+|.++||++|-.|-
T Consensus 1 eRMnQLEdKvEeLl 14 (34)
T 2bni_A 1 XRMKQIEDKLEEIL 14 (34)
T ss_dssp --CHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHH
Confidence 58889999987764
No 20
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=20.58 E-value=63 Score=21.47 Aligned_cols=18 Identities=17% Similarity=0.265 Sum_probs=12.6
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 029563 64 SLLDRVASLENRLFQLCL 81 (191)
Q Consensus 64 SLmDRLa~LE~RllqL~~ 81 (191)
.|-+||+.||..|.+|.-
T Consensus 49 ~L~~r~~~le~~l~~l~~ 66 (89)
T 3coq_A 49 EVESRLERLEQLFLLIFP 66 (89)
T ss_dssp HHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 466778888877777643
No 21
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=20.51 E-value=2.2e+02 Score=21.26 Aligned_cols=53 Identities=25% Similarity=0.249 Sum_probs=36.6
Q ss_pred CcchhhhhhhhHHHHHHHHHhcccccCCCCCCCchhhccccCHHHHHHHHHhhcc----HHHHHHHHHHHHHHHH
Q 029563 10 SVPLVSRLDHLESIMKDLERKQNLAKWGCNSNNSERQRQHLPLNLAAREAYFKGS----LLDRVASLENRLFQLC 80 (191)
Q Consensus 10 ~~PiLsRLDRLD~~Lr~LEe~r~~~k~~~~sa~~~~e~qcrpl~~ALeEvq~KGS----LmDRLa~LE~RllqL~ 80 (191)
++++=.-|.+|+.+++.||.-. .||+++|...+-==. .-++|+..|.||..|.
T Consensus 29 ~~sFEeal~eLEeIV~~LE~ge------------------l~LEesl~lyeeG~~L~k~C~~~L~~AE~kV~~L~ 85 (100)
T 1vp7_A 29 PQDFETALAELESLVSAMENGT------------------LPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLE 85 (100)
T ss_dssp CCSHHHHHHHHHHHHHHHHTTC------------------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCC------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555667889999999998533 567887765432222 3367888899998884
Done!