Query 029563
Match_columns 191
No_of_seqs 25 out of 27
Neff 2.7
Searched_HMMs 13730
Date Tue Mar 26 00:42:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029563.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029563hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vp7a_ a.7.13.1 (A:) Exonucle 48.2 28 0.002 22.5 6.2 55 12-84 7-65 (68)
2 d2rfra1 d.17.4.28 (A:1-153) Un 43.4 4 0.00029 27.6 1.3 20 66-85 1-20 (153)
3 d2f23a1 a.2.1.1 (A:3-77) GreA 38.9 18 0.0013 24.0 4.1 33 52-84 27-68 (75)
4 d1grja1 a.2.1.1 (A:2-79) GreA 28.1 43 0.0031 22.2 4.6 33 52-84 28-69 (78)
5 d1rz3a_ c.37.1.6 (A:) Hypothet 20.7 31 0.0022 22.8 2.7 36 72-110 3-38 (198)
6 d1sk4a_ d.118.1.1 (A:) Peptido 16.8 18 0.0013 25.8 0.7 17 170-187 144-162 (163)
7 d1d8wa_ c.1.15.2 (A:) L-rhamno 10.9 72 0.0052 27.3 3.0 21 54-74 356-376 (416)
8 d1sxjc1 a.80.1.1 (C:239-333) R 9.6 77 0.0056 20.2 2.1 18 60-77 56-73 (95)
9 d1k4ta1 a.2.8.1 (A:641-712) Eu 9.1 2.4E+02 0.017 18.5 4.6 16 68-83 50-65 (72)
10 d2jaka1 a.118.1.20 (A:30-372) 8.2 21 0.0015 29.3 -1.6 10 179-188 98-107 (343)
No 1
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=48.22 E-value=28 Score=22.53 Aligned_cols=55 Identities=27% Similarity=0.280 Sum_probs=38.4
Q ss_pred chhhhhhhhHHHHHHHHHhcccccCCCCCCCchhhccccCHHHHHHHHHhhccHH----HHHHHHHHHHHHHHHHhh
Q 029563 12 PLVSRLDHLESIMKDLERKQNLAKWGCNSNNSERQRQHLPLNLAAREAYFKGSLL----DRVASLENRLFQLCLELE 84 (191)
Q Consensus 12 PiLsRLDRLD~~Lr~LEe~r~~~k~~~~sa~~~~e~qcrpl~~ALeEvq~KGSLm----DRLa~LE~RllqL~~ELe 84 (191)
..=.-+++|+.+++.||.-. .||+++|..-+-=-.|+ +.|+..|.||-+|..+.+
T Consensus 7 sfEe~l~~LE~IV~~LE~g~------------------l~Leesl~~ye~G~~L~~~C~~~L~~ae~ki~~l~~~~~ 65 (68)
T d1vp7a_ 7 DFETALAELESLVSAMENGT------------------LPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGDLL 65 (68)
T ss_dssp SHHHHHHHHHHHHHHHHTTC------------------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCC------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 34456888999999998643 57888887654333343 568888999888876653
No 2
>d2rfra1 d.17.4.28 (A:1-153) Uncharacterized protein Saro3722 {Novosphingobium aromaticivorans [TaxId: 48935]}
Probab=43.42 E-value=4 Score=27.63 Aligned_cols=20 Identities=30% Similarity=0.243 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 029563 66 LDRVASLENRLFQLCLELES 85 (191)
Q Consensus 66 mDRLa~LE~RllqL~~ELe~ 85 (191)
||.|+.||.||.+|.-+.++
T Consensus 1 ~~~~~~l~~rl~~led~~aI 20 (153)
T d2rfra1 1 MDDLTNLAARLRLLEDREEI 20 (153)
T ss_dssp TTSHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHH
Confidence 67778888888877766443
No 3
>d2f23a1 a.2.1.1 (A:3-77) GreA transcript cleavage protein, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=38.85 E-value=18 Score=23.98 Aligned_cols=33 Identities=18% Similarity=-0.003 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhccH---------HHHHHHHHHHHHHHHHHhh
Q 029563 52 LNLAAREAYFKGSL---------LDRVASLENRLFQLCLELE 84 (191)
Q Consensus 52 l~~ALeEvq~KGSL---------mDRLa~LE~RllqL~~ELe 84 (191)
+..+|.+|..-|.| -++..+||.|+.+|...|.
T Consensus 27 i~~~I~eAr~~GDl~ENaeY~aAke~q~~~e~rI~eLe~~L~ 68 (75)
T d2f23a1 27 ATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDILS 68 (75)
T ss_dssp HHHHHHHHHTCSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45788899999998 5789999999999987764
No 4
>d1grja1 a.2.1.1 (A:2-79) GreA transcript cleavage protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=28.09 E-value=43 Score=22.16 Aligned_cols=33 Identities=24% Similarity=0.221 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhccHH---------HHHHHHHHHHHHHHHHhh
Q 029563 52 LNLAAREAYFKGSLL---------DRVASLENRLFQLCLELE 84 (191)
Q Consensus 52 l~~ALeEvq~KGSLm---------DRLa~LE~RllqL~~ELe 84 (191)
+..++.+|..-|+|- ++..+||.|+..|.-.|.
T Consensus 28 i~~~I~~Ar~~GDlsENaeY~aAKe~q~~~e~RI~eLe~~L~ 69 (78)
T d1grja1 28 IIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLS 69 (78)
T ss_dssp HHHHHHHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457888888899885 688899999998887764
No 5
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=20.67 E-value=31 Score=22.80 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcccccccccccCCCCccc
Q 029563 72 LENRLFQLCLELESSSTYGNSTETNISRDASSSQGSKKQ 110 (191)
Q Consensus 72 LE~RllqL~~ELe~~~~s~~ss~~~~s~~ass~~g~~~~ 110 (191)
|.+||.+||.....-.+. +..+=+++|++.| ||-++
T Consensus 3 ~~~~~~~~~~~~~~~~~~-~~~iIgI~G~~GS--GKSTl 38 (198)
T d1rz3a_ 3 LRDRIDFLCKTILAIKTA-GRLVLGIDGLSRS--GKTTL 38 (198)
T ss_dssp HHHHHHHHHHHHHTSCCS-SSEEEEEEECTTS--SHHHH
T ss_pred hHHHHHHHHHHHHhccCC-CCEEEEEECCCCC--CHHHH
Confidence 789999999998554343 4554566666544 55554
No 6
>d1sk4a_ d.118.1.1 (A:) Peptidoglycan recognition protein I-alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.83 E-value=18 Score=25.78 Aligned_cols=17 Identities=35% Similarity=0.741 Sum_probs=10.3
Q ss_pred hhhcCCCcccC--CCCCccc
Q 029563 170 KTCNRGKTRVS--SNWPHLK 187 (191)
Q Consensus 170 ~~c~~~kk~~~--p~wp~~k 187 (191)
++|- |++-.. ++|||||
T Consensus 144 t~CP-G~~l~~~~~~w~~f~ 162 (163)
T d1sk4a_ 144 ILSP-GQALYNIISTWPHFK 162 (163)
T ss_dssp SCCT-TSHHHHHHTTSTTTT
T ss_pred CCCc-HHHHHHHhhhCcccC
Confidence 4563 333332 7799997
No 7
>d1d8wa_ c.1.15.2 (A:) L-rhamnose isomerase {Escherichia coli [TaxId: 562]}
Probab=10.93 E-value=72 Score=27.31 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=19.7
Q ss_pred HHHHHHHhhccHHHHHHHHHH
Q 029563 54 LAAREAYFKGSLLDRVASLEN 74 (191)
Q Consensus 54 ~ALeEvq~KGSLmDRLa~LE~ 74 (191)
++|+++|..|.+-.||+.+|.
T Consensus 356 ~~L~~~q~~gD~t~rla~~Ee 376 (416)
T d1d8wa_ 356 AELRKLEAPGDYTARLALLEE 376 (416)
T ss_dssp HHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 679999999999999999997
No 8
>d1sxjc1 a.80.1.1 (C:239-333) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.61 E-value=77 Score=20.18 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=15.8
Q ss_pred HhhccHHHHHHHHHHHHH
Q 029563 60 YFKGSLLDRVASLENRLF 77 (191)
Q Consensus 60 q~KGSLmDRLa~LE~Rll 77 (191)
..|..|+++|+..|.||.
T Consensus 56 ~~k~~ll~~la~~e~rL~ 73 (95)
T d1sxjc1 56 ETRVHLLTKLADIEYSIS 73 (95)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 568889999999999984
No 9
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.13 E-value=2.4e+02 Score=18.53 Aligned_cols=16 Identities=31% Similarity=0.476 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHh
Q 029563 68 RVASLENRLFQLCLEL 83 (191)
Q Consensus 68 RLa~LE~RllqL~~EL 83 (191)
+|.-||++|.+|+.+-
T Consensus 50 ~leRL~EQL~KLevqa 65 (72)
T d1k4ta1 50 AVQRLEEQLMKLEVQA 65 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhh
Confidence 4566799999998763
No 10
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.19 E-value=21 Score=29.26 Aligned_cols=10 Identities=50% Similarity=1.335 Sum_probs=7.6
Q ss_pred cCCCCCcccc
Q 029563 179 VSSNWPHLKL 188 (191)
Q Consensus 179 ~~p~wp~~kl 188 (191)
.-|.||||.+
T Consensus 98 ~e~sWpHL~l 107 (343)
T d2jaka1 98 LEAAWPHLQL 107 (343)
T ss_dssp CCTTHHHHHH
T ss_pred cCCCCchHHH
Confidence 3578999975
Done!