BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029565
(191 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LR5|A Chain A, Crystal Structure Of Auxin Binding Protein
pdb|1LR5|B Chain B, Crystal Structure Of Auxin Binding Protein
pdb|1LR5|C Chain C, Crystal Structure Of Auxin Binding Protein
pdb|1LR5|D Chain D, Crystal Structure Of Auxin Binding Protein
pdb|1LRH|A Chain A, Crystal Structure Of Auxin-Binding Protein 1 In Complex
With 1- Naphthalene Acetic Acid
pdb|1LRH|B Chain B, Crystal Structure Of Auxin-Binding Protein 1 In Complex
With 1- Naphthalene Acetic Acid
pdb|1LRH|C Chain C, Crystal Structure Of Auxin-Binding Protein 1 In Complex
With 1- Naphthalene Acetic Acid
pdb|1LRH|D Chain D, Crystal Structure Of Auxin-Binding Protein 1 In Complex
With 1- Naphthalene Acetic Acid
Length = 163
Score = 237 bits (604), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 109/163 (66%), Positives = 137/163 (84%), Gaps = 2/163 (1%)
Query: 29 IKGFPLVRNISELPQDNYGREGLAHITVAGSILHGMKEIEVWLQTFSPGTRTPIHRHSCE 88
++ LVR+IS++PQ +YG EGL+HITVAG++ HGMKE+EVWLQT SPG RTPIHRHSCE
Sbjct: 3 VRDNSLVRDISQMPQSSYGIEGLSHITVAGALNHGMKEVEVWLQTISPGQRTPIHRHSCE 62
Query: 89 EIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLV 148
E+F VLKG GTL + SSS K+PG+PQE FF N+TF IPVND HQVWN++E+EDLQ+LV
Sbjct: 63 EVFTVLKGKGTLLMGSSSL-KYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLV 121
Query: 149 VISRPPVKVFIYEDWSMPHTAAKLKFPYFWDEQCLQSPVKDEL 191
+ISRPP K+F+Y+DWSMPHTAA LKFP+ WDE C ++ K++L
Sbjct: 122 IISRPPAKIFLYDDWSMPHTAAVLKFPFVWDEDCFEA-AKEQL 163
>pdb|3HT2|A Chain A, Zink Containing Polyketide Cyclase Remf From Streptomyces
Resistomycificus
pdb|3HT2|C Chain C, Zink Containing Polyketide Cyclase Remf From Streptomyces
Resistomycificus
Length = 145
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 75 SPGTRTPIHRHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQ 134
SP TP H H E VL+GS L L + G P E F IP + H
Sbjct: 47 SPNGSTPPHFHEWEHEIYVLEGSXGLVLPDQGRTEEVG-PGEAIF-------IPRGEPHG 98
Query: 135 VWNTNENEDLQMLVV--ISRPPVK-VFIYED 162
+ T + + LVV RPPV+ VF+ ED
Sbjct: 99 -FVTGPGQTCRFLVVAPCERPPVRNVFLSED 128
>pdb|3HT1|A Chain A, 1.2a Structure Of The Polyketide Cyclase Remf From
Streptomyces Resistomycificus
Length = 145
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 75 SPGTRTPIHRHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQ 134
SP TP H H E VL+GS L L + G P E F IP + H
Sbjct: 47 SPNGSTPPHFHEWEHEIYVLEGSMGLVLPDQGRTEEVG-PGEAIF-------IPRGEPHG 98
Query: 135 VWNTNENEDLQMLVV--ISRPPVK-VFIYED 162
+ T + + LVV RPPV+ VF+ ED
Sbjct: 99 -FVTGPGQTCRFLVVAPCERPPVRNVFLSED 128
>pdb|3BU7|A Chain A, Crystal Structure And Biochemical Characterization Of
Gdosp, A Gentisate 1,2-Dioxygenase From Silicibacter
Pomeroyi
pdb|3BU7|B Chain B, Crystal Structure And Biochemical Characterization Of
Gdosp, A Gentisate 1,2-Dioxygenase From Silicibacter
Pomeroyi
Length = 394
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 62 HGMKEIEVWLQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFA 121
H M + +Q PG T HRH+ I+ V KG G + + EH F
Sbjct: 289 HPMLTMGASMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIVGGKRFDW-----SEHDIFC 343
Query: 122 NSTFHIPVNDAHQVWNTNENED 143
+P H+ NT E +D
Sbjct: 344 -----VPAWTWHEHCNTQERDD 360
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 71 LQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFH 126
+QT G R HRH+ + +++GSG Y H+ G + N T+H
Sbjct: 127 IQTMKAGERAGAHRHAASALRFIMEGSGA-YTIVDGHKVELGA-NDFVLTPNGTWH 180
>pdb|2F4P|A Chain A, Crystal Structure Of A Cupin-Like Protein (Tm1010) From
Thermotoga Maritima Msb8 At 1.90 A Resolution
pdb|2F4P|B Chain B, Crystal Structure Of A Cupin-Like Protein (Tm1010) From
Thermotoga Maritima Msb8 At 1.90 A Resolution
pdb|2F4P|C Chain C, Crystal Structure Of A Cupin-Like Protein (Tm1010) From
Thermotoga Maritima Msb8 At 1.90 A Resolution
pdb|2F4P|D Chain D, Crystal Structure Of A Cupin-Like Protein (Tm1010) From
Thermotoga Maritima Msb8 At 1.90 A Resolution
Length = 147
Score = 29.6 bits (65), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 62 HGMKEIEVWLQTFSPGTRTPIHRHSCEEIFIVLKGSG 98
+G+ +V+ F PG RT H H +I IV +G G
Sbjct: 43 NGVFNTQVYDVVFEPGARTHWHSHPGGQILIVTRGKG 79
>pdb|2ET7|A Chain A, Structural And Spectroscopic Insights Into The Mechanism
Of Oxalate Oxidase
Length = 201
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 74 FSPGTRTPIHRH-SCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDA 132
F+PG P H H EI +V+KG + + S + K A TF IP
Sbjct: 79 FAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGN--KLYSRVVRAGETFVIPRGLM 136
Query: 133 HQVWNTNENEDLQMLVVISRPPVKVFI 159
H +N + E ++ S+ P VF+
Sbjct: 137 HFQFNVGKTEAYMVVSFNSQNPGIVFV 163
>pdb|1FI2|A Chain A, Crystal Structure Of Germin (Oxalate Oxidase)
pdb|2ET1|A Chain A, Oxalate Oxidase In Complex With Substrate Analogue
Glycolate
Length = 201
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 74 FSPGTRTPIHRH-SCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDA 132
F+PG P H H EI +V+KG + + S + K A TF IP
Sbjct: 79 FAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGN--KLYSRVVRAGETFVIPRGLM 136
Query: 133 HQVWNTNENEDLQMLVVISRPPVKVFI 159
H +N + E ++ S+ P VF+
Sbjct: 137 HFQFNVGKTEAYMVVSFNSQNPGIVFV 163
>pdb|2ETE|A Chain A, Recombinant Oxalate Oxidase In Complex With Glycolate
pdb|2ETE|B Chain B, Recombinant Oxalate Oxidase In Complex With Glycolate
Length = 201
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 74 FSPGTRTPIHRH-SCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDA 132
F+PG P H H EI +V+KG + + S + K A TF IP
Sbjct: 79 FAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGN--KLYSRVVRAGETFVIPRGLM 136
Query: 133 HQVWNTNENEDLQMLVVISRPPVKVFI 159
H +N + E ++ S+ P VF+
Sbjct: 137 HFQFNVGKTEAYMVVSFNSQNPGIVFV 163
>pdb|3SXW|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or69
Length = 201
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 102 LASSSHEKHPGKPQEHFFFANSTFHIPVNDAH 133
L S+H +PGK + FFFA FH ++ A
Sbjct: 68 LNFSTHVIYPGKVGKEFFFAKGHFHAKLDRAQ 99
>pdb|1F1S|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase At 2.1 Angstrom Resolution.
pdb|1I8Q|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase Complexed With Enzyme Product, Unsaturated
Disaccharide Hyaluronan
pdb|1LXM|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase Complexed With Hexasaccharide Unit Of Hyaluronan
Length = 814
Score = 26.9 bits (58), Expect = 6.7, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 109 KHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVVISRPPVKV 157
K PG+ + FF NST I + WN+ N + ++S P + +
Sbjct: 663 KEPGRNIGYIFFKNSTIDIERKEQTGTWNS-INRTSKNTSIVSNPFITI 710
>pdb|2BKW|A Chain A, Yeast Alanine:glyoxylate Aminotransferase Yfl030w
Length = 385
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 33 PLVRNISELPQDNYGREGLAHITVAGSILHGMKEIEVWLQTFSPGT 78
PL +L Q++YG + H+ + ++L +K I ++ SP T
Sbjct: 125 PLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPET 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,012,691
Number of Sequences: 62578
Number of extensions: 242080
Number of successful extensions: 466
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 458
Number of HSP's gapped (non-prelim): 15
length of query: 191
length of database: 14,973,337
effective HSP length: 93
effective length of query: 98
effective length of database: 9,153,583
effective search space: 897051134
effective search space used: 897051134
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)