Query 029565
Match_columns 191
No_of_seqs 202 out of 1715
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 14:57:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029565.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029565hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02041 Auxin_BP: Auxin bindi 100.0 2.9E-43 6.3E-48 268.3 12.0 167 24-191 1-167 (167)
2 PRK13290 ectC L-ectoine syntha 99.7 3.8E-16 8.2E-21 118.3 13.4 108 33-156 1-113 (125)
3 PF07883 Cupin_2: Cupin domain 99.6 1.7E-15 3.7E-20 102.2 9.4 69 71-150 2-71 (71)
4 TIGR03404 bicupin_oxalic bicup 99.6 5.8E-15 1.3E-19 130.1 13.4 140 32-179 212-356 (367)
5 COG0662 {ManC} Mannose-6-phosp 99.6 2.8E-14 6.2E-19 108.1 11.4 79 66-155 35-114 (127)
6 COG3837 Uncharacterized conser 99.6 3.5E-14 7.6E-19 109.9 10.0 94 60-164 35-132 (161)
7 TIGR03214 ura-cupin putative a 99.5 2.4E-13 5.3E-18 114.7 13.5 107 30-149 143-251 (260)
8 PRK11171 hypothetical protein; 99.5 6.2E-13 1.3E-17 112.6 13.8 109 30-150 146-257 (266)
9 COG1917 Uncharacterized conser 99.5 1.2E-12 2.6E-17 99.1 13.5 88 64-165 40-128 (131)
10 PRK09943 DNA-binding transcrip 99.4 1.3E-12 2.9E-17 104.6 11.7 78 65-153 105-183 (185)
11 PF01050 MannoseP_isomer: Mann 99.4 3.9E-12 8.4E-17 99.3 12.8 79 66-155 62-141 (151)
12 COG2140 Thermophilic glucose-6 99.4 7.6E-12 1.6E-16 101.5 13.8 123 30-164 49-174 (209)
13 TIGR01479 GMP_PMI mannose-1-ph 99.4 3.7E-12 8.1E-17 115.6 13.4 78 66-154 375-453 (468)
14 COG4101 Predicted mannose-6-ph 99.4 3.2E-12 7E-17 94.8 10.1 84 60-151 39-123 (142)
15 PRK15460 cpsB mannose-1-phosph 99.4 3.2E-12 6.9E-17 116.2 12.1 79 65-154 383-462 (478)
16 smart00835 Cupin_1 Cupin. This 99.4 1.1E-11 2.3E-16 95.8 12.0 85 66-155 29-114 (146)
17 PRK11171 hypothetical protein; 99.3 2.6E-11 5.7E-16 102.7 14.3 75 65-150 59-135 (266)
18 TIGR03214 ura-cupin putative a 99.3 4.6E-11 9.9E-16 100.9 14.1 89 50-150 41-132 (260)
19 PRK04190 glucose-6-phosphate i 99.3 7.1E-11 1.5E-15 95.5 12.0 83 65-153 66-157 (191)
20 TIGR03404 bicupin_oxalic bicup 99.2 2.6E-10 5.6E-15 100.7 11.6 94 61-164 61-160 (367)
21 PLN00212 glutelin; Provisional 99.1 2.7E-09 5.8E-14 97.1 14.2 85 66-151 79-183 (493)
22 PF06339 Ectoine_synth: Ectoin 99.0 9.9E-09 2.2E-13 77.0 12.7 109 33-156 1-113 (126)
23 PF00190 Cupin_1: Cupin; Inte 99.0 3E-09 6.6E-14 81.8 9.0 85 65-154 32-123 (144)
24 TIGR03037 anthran_nbaC 3-hydro 98.8 2.3E-08 5E-13 78.4 8.6 72 70-150 30-102 (159)
25 PF02311 AraC_binding: AraC-li 98.8 4.5E-08 9.8E-13 72.1 8.8 69 76-155 12-80 (136)
26 PRK15457 ethanolamine utilizat 98.7 3.1E-07 6.6E-12 75.9 13.3 108 25-150 115-225 (233)
27 PRK13264 3-hydroxyanthranilate 98.7 4.8E-08 1E-12 77.8 8.2 66 75-149 42-107 (177)
28 PF12973 Cupin_7: ChrR Cupin-l 98.7 3.6E-07 7.8E-12 65.1 10.1 82 48-148 7-88 (91)
29 PF11699 CENP-C_C: Mif2/CENP-C 98.6 7.3E-07 1.6E-11 63.2 10.4 73 66-149 11-84 (85)
30 TIGR02451 anti_sig_ChrR anti-s 98.6 1.8E-07 3.9E-12 77.0 8.3 73 67-154 127-199 (215)
31 TIGR02272 gentisate_1_2 gentis 98.6 9.1E-08 2E-12 83.5 6.3 79 66-155 80-159 (335)
32 COG3257 GlxB Uncharacterized p 98.6 2.3E-06 4.9E-11 70.1 13.2 105 28-150 28-135 (264)
33 PF06560 GPI: Glucose-6-phosph 98.4 6.1E-06 1.3E-10 66.3 12.1 87 66-154 49-148 (182)
34 TIGR02272 gentisate_1_2 gentis 98.4 1.1E-06 2.4E-11 76.7 7.9 77 67-156 250-326 (335)
35 COG3257 GlxB Uncharacterized p 98.3 5.1E-06 1.1E-10 68.0 10.1 110 26-148 142-253 (264)
36 PRK10371 DNA-binding transcrip 98.3 4.8E-06 1.1E-10 71.5 8.7 63 68-140 27-89 (302)
37 PRK13501 transcriptional activ 98.2 4.2E-06 9.2E-11 70.9 8.2 57 74-140 25-81 (290)
38 COG3435 Gentisate 1,2-dioxygen 98.2 2.1E-06 4.5E-11 73.3 5.7 80 66-157 260-339 (351)
39 PF06249 EutQ: Ethanolamine ut 98.2 1.3E-05 2.8E-10 62.5 8.8 70 66-151 76-146 (152)
40 PRK10296 DNA-binding transcrip 98.2 1.7E-05 3.6E-10 66.7 9.9 54 77-140 33-86 (278)
41 PRK13500 transcriptional activ 98.1 1.4E-05 3E-10 68.8 9.1 56 75-140 56-111 (312)
42 PF03079 ARD: ARD/ARD' family; 98.1 3.4E-05 7.3E-10 60.7 10.2 66 81-154 86-153 (157)
43 PLN00212 glutelin; Provisional 98.1 1.8E-05 3.8E-10 72.4 9.8 80 66-152 347-428 (493)
44 PRK13502 transcriptional activ 98.1 1.8E-05 3.8E-10 66.7 8.6 60 71-140 22-81 (282)
45 PF05523 FdtA: WxcM-like, C-te 98.1 1.4E-05 3.1E-10 60.9 7.0 71 74-152 40-112 (131)
46 COG4766 EutQ Ethanolamine util 98.1 0.00013 2.7E-09 56.8 11.9 105 30-150 61-168 (176)
47 COG3435 Gentisate 1,2-dioxygen 98.0 9.1E-06 2E-10 69.5 5.5 77 68-155 93-170 (351)
48 TIGR02297 HpaA 4-hydroxyphenyl 98.0 2.7E-05 5.8E-10 65.6 7.8 54 77-140 33-87 (287)
49 PRK13503 transcriptional activ 98.0 1.7E-05 3.7E-10 66.4 6.3 55 75-139 23-77 (278)
50 PF06052 3-HAO: 3-hydroxyanthr 97.9 0.00012 2.7E-09 56.7 9.2 77 71-155 37-113 (151)
51 COG1791 Uncharacterized conser 97.9 8.5E-05 1.8E-09 58.7 7.9 69 81-155 89-157 (181)
52 PF05899 Cupin_3: Protein of u 97.7 0.00016 3.5E-09 49.6 7.1 60 66-137 6-66 (74)
53 COG4297 Uncharacterized protei 97.7 0.00015 3.2E-09 55.5 7.2 69 77-156 52-122 (163)
54 PF05995 CDO_I: Cysteine dioxy 97.7 0.00047 1E-08 54.9 10.6 94 66-160 74-172 (175)
55 PF14499 DUF4437: Domain of un 97.6 0.00054 1.2E-08 57.7 9.5 73 67-149 36-108 (251)
56 KOG2107 Uncharacterized conser 97.2 0.00075 1.6E-08 53.1 4.9 52 81-140 87-141 (179)
57 PF07385 DUF1498: Protein of u 97.1 0.015 3.2E-07 48.0 12.6 95 44-140 61-179 (225)
58 PRK10572 DNA-binding transcrip 96.9 0.0046 9.9E-08 52.2 8.3 59 85-153 47-105 (290)
59 COG3450 Predicted enzyme of th 96.6 0.0051 1.1E-07 46.0 5.4 62 66-139 44-106 (116)
60 KOG3995 3-hydroxyanthranilate 96.6 0.0027 5.9E-08 52.0 4.1 58 74-137 40-97 (279)
61 COG3822 ABC-type sugar transpo 96.6 0.038 8.3E-07 44.7 10.3 73 66-140 85-178 (225)
62 PF14499 DUF4437: Domain of un 96.5 0.011 2.3E-07 49.9 7.5 110 29-150 132-244 (251)
63 KOG2757 Mannose-6-phosphate is 96.3 0.021 4.6E-07 50.3 8.2 73 64-148 330-403 (411)
64 PF04209 HgmA: homogentisate 1 95.9 0.2 4.3E-06 45.3 12.7 74 65-151 123-197 (424)
65 PF05118 Asp_Arg_Hydrox: Aspar 95.7 0.071 1.5E-06 41.9 7.9 71 67-148 80-156 (163)
66 PF00908 dTDP_sugar_isom: dTDP 95.7 0.07 1.5E-06 42.7 7.9 81 68-150 44-131 (176)
67 COG1898 RfbC dTDP-4-dehydrorha 95.6 0.097 2.1E-06 41.8 8.6 66 76-141 54-124 (173)
68 PF12852 Cupin_6: Cupin 95.6 0.077 1.7E-06 42.0 8.1 44 88-140 36-80 (186)
69 PF02678 Pirin: Pirin; InterP 95.6 0.12 2.5E-06 38.1 8.2 63 77-149 39-105 (107)
70 PF07847 DUF1637: Protein of u 95.6 0.06 1.3E-06 44.0 7.3 88 66-155 43-146 (200)
71 COG1741 Pirin-related protein 95.4 0.067 1.4E-06 45.8 7.3 74 72-154 49-126 (276)
72 TIGR01221 rmlC dTDP-4-dehydror 95.4 0.14 3E-06 41.0 8.6 78 71-150 48-131 (176)
73 PF05726 Pirin_C: Pirin C-term 95.0 0.31 6.7E-06 35.2 8.9 72 71-156 3-75 (104)
74 COG3806 ChrR Transcriptional a 94.9 0.12 2.6E-06 42.0 7.1 89 45-151 109-197 (216)
75 PF04962 KduI: KduI/IolB famil 94.6 0.35 7.6E-06 41.0 9.5 117 29-154 111-247 (261)
76 PRK09685 DNA-binding transcrip 94.4 0.32 7E-06 41.0 8.9 43 88-140 72-114 (302)
77 PF09313 DUF1971: Domain of un 94.2 0.23 5E-06 34.8 6.3 54 89-147 27-80 (82)
78 COG5553 Predicted metal-depend 94.1 0.44 9.6E-06 37.7 8.2 128 9-141 12-147 (191)
79 PF08007 Cupin_4: Cupin superf 94.0 0.26 5.6E-06 42.8 7.6 67 74-140 120-201 (319)
80 PRK05341 homogentisate 1,2-dio 94.0 0.52 1.1E-05 42.8 9.6 68 74-153 138-208 (438)
81 PF04962 KduI: KduI/IolB famil 94.0 0.52 1.1E-05 40.0 9.2 81 66-151 26-107 (261)
82 PLN02288 mannose-6-phosphate i 93.9 0.21 4.6E-06 44.8 7.0 61 64-132 331-391 (394)
83 PF14525 AraC_binding_2: AraC- 93.8 0.9 1.9E-05 34.4 9.7 41 90-140 58-98 (172)
84 PLN02658 homogentisate 1,2-dio 93.7 0.6 1.3E-05 42.3 9.5 70 71-152 128-200 (435)
85 PF06865 DUF1255: Protein of u 93.7 0.68 1.5E-05 33.3 8.0 64 73-150 29-93 (94)
86 PF11142 DUF2917: Protein of u 93.4 0.23 5E-06 33.0 5.0 55 73-136 3-57 (63)
87 PRK00924 5-keto-4-deoxyuronate 93.2 0.92 2E-05 38.8 9.5 69 74-152 59-130 (276)
88 PF02373 JmjC: JmjC domain, hy 93.1 0.12 2.6E-06 37.2 3.5 24 117-140 83-106 (114)
89 PF13621 Cupin_8: Cupin-like d 93.1 0.16 3.5E-06 41.3 4.6 65 75-139 139-233 (251)
90 TIGR00218 manA mannose-6-phosp 93.0 1 2.2E-05 38.7 9.7 59 65-135 233-291 (302)
91 PRK15131 mannose-6-phosphate i 92.8 0.95 2.1E-05 40.6 9.5 60 65-136 319-378 (389)
92 PRK00924 5-keto-4-deoxyuronate 92.4 1.3 2.9E-05 37.9 9.3 111 33-151 137-258 (276)
93 TIGR01015 hmgA homogentisate 1 92.0 1.4 3.1E-05 39.9 9.4 66 73-151 131-199 (429)
94 COG3718 IolB Uncharacterized e 91.9 4 8.6E-05 34.3 11.2 81 60-140 22-102 (270)
95 PRK10579 hypothetical protein; 91.8 1.3 2.7E-05 31.9 7.2 53 87-150 41-93 (94)
96 COG2850 Uncharacterized conser 90.7 0.66 1.4E-05 41.2 5.9 84 69-155 121-216 (383)
97 PF13759 2OG-FeII_Oxy_5: Putat 90.0 1.9 4.2E-05 30.7 7.0 80 69-149 2-99 (101)
98 COG1482 ManA Phosphomannose is 89.9 2.9 6.2E-05 36.5 9.1 60 66-137 241-301 (312)
99 PHA00672 hypothetical protein 88.9 3.1 6.7E-05 31.7 7.5 70 66-147 46-115 (152)
100 TIGR02466 conserved hypothetic 88.2 3.2 6.9E-05 33.9 7.9 82 68-150 97-196 (201)
101 PRK12335 tellurite resistance 86.5 1.9 4E-05 36.6 5.8 60 76-140 20-83 (287)
102 COG3508 HmgA Homogentisate 1,2 85.9 9.9 0.00022 33.9 9.9 53 87-151 146-198 (427)
103 PRK09391 fixK transcriptional 85.6 6 0.00013 32.2 8.3 76 66-149 35-113 (230)
104 PF07172 GRP: Glycine rich pro 83.3 0.95 2.1E-05 32.6 2.2 10 1-10 1-10 (95)
105 PRK11753 DNA-binding transcrip 83.1 9 0.0002 30.2 8.1 49 71-126 22-73 (211)
106 COG1482 ManA Phosphomannose is 78.6 1.6 3.6E-05 38.0 2.5 21 117-137 160-180 (312)
107 KOG4064 Cysteine dioxygenase C 78.4 4 8.7E-05 32.1 4.3 94 61-157 66-165 (196)
108 PF05984 Cytomega_UL20A: Cytom 78.0 4.7 0.0001 28.5 4.1 28 1-30 1-28 (100)
109 PF06172 Cupin_5: Cupin superf 77.7 27 0.00059 26.7 8.8 81 68-155 42-130 (139)
110 PRK15131 mannose-6-phosphate i 76.8 2.1 4.6E-05 38.3 2.7 21 117-137 239-259 (389)
111 TIGR00218 manA mannose-6-phosp 75.0 1.7 3.7E-05 37.4 1.6 32 117-154 153-184 (302)
112 KOG1356 Putative transcription 74.1 1.2 2.5E-05 43.4 0.4 58 75-140 763-824 (889)
113 PRK15186 AraC family transcrip 70.9 12 0.00026 32.1 5.9 42 90-140 41-82 (291)
114 COG3717 KduI 5-keto 4-deoxyuro 70.0 29 0.00064 29.3 7.6 54 87-150 75-130 (278)
115 PRK13918 CRP/FNR family transc 68.5 18 0.00039 28.2 6.1 49 71-126 8-61 (202)
116 COG3123 Uncharacterized protei 68.0 23 0.0005 25.1 5.6 51 87-148 41-91 (94)
117 PF05962 HutD: HutD; InterPro 67.9 61 0.0013 25.8 9.4 59 87-155 54-113 (184)
118 PF00027 cNMP_binding: Cyclic 67.3 8 0.00017 25.5 3.3 18 87-104 17-34 (91)
119 PF13696 zf-CCHC_2: Zinc knuck 66.9 2.9 6.3E-05 24.1 0.8 16 175-190 17-32 (32)
120 PLN02288 mannose-6-phosphate i 66.4 4.4 9.5E-05 36.5 2.3 21 117-137 253-273 (394)
121 KOG2130 Phosphatidylserine-spe 66.2 9.2 0.0002 33.6 4.1 30 111-140 259-288 (407)
122 PF04115 Ureidogly_hydro: Urei 65.3 12 0.00027 29.3 4.4 67 81-150 73-144 (165)
123 PRK03606 ureidoglycolate hydro 65.3 37 0.00081 26.8 7.1 69 81-150 72-141 (162)
124 PRK10402 DNA-binding transcrip 65.1 25 0.00055 28.3 6.4 48 72-126 34-84 (226)
125 PF06719 AraC_N: AraC-type tra 64.0 42 0.00092 25.7 7.2 51 89-149 25-77 (155)
126 smart00100 cNMP Cyclic nucleot 62.8 28 0.00061 23.4 5.6 31 72-102 20-50 (120)
127 cd00038 CAP_ED effector domain 56.5 36 0.00077 22.8 5.2 34 71-104 19-52 (115)
128 PF09125 COX2-transmemb: Cytoc 56.1 5.8 0.00012 23.5 0.8 18 3-20 14-31 (38)
129 PF04622 ERG2_Sigma1R: ERG2 an 52.9 52 0.0011 27.2 6.2 49 84-140 116-164 (216)
130 PHA02984 hypothetical protein; 52.4 63 0.0014 27.7 6.7 53 90-150 96-148 (286)
131 KOG3384 Selenoprotein [General 52.1 8.2 0.00018 29.7 1.3 20 1-20 1-20 (154)
132 KOG3706 Uncharacterized conser 51.4 7.7 0.00017 35.9 1.2 64 75-139 325-405 (629)
133 COG3615 TehB Uncharacterized p 50.2 32 0.0007 24.9 4.0 51 90-146 39-90 (99)
134 PF13640 2OG-FeII_Oxy_3: 2OG-F 49.1 79 0.0017 21.7 6.0 30 119-149 66-96 (100)
135 PF10794 DUF2606: Protein of u 48.8 43 0.00093 25.2 4.6 35 11-45 21-55 (131)
136 KOG2131 Uncharacterized conser 46.6 12 0.00025 33.6 1.5 23 119-141 272-294 (427)
137 PRK09392 ftrB transcriptional 46.5 61 0.0013 26.0 5.8 48 71-125 32-81 (236)
138 COG3718 IolB Uncharacterized e 46.4 1.8E+02 0.004 24.6 9.5 106 39-154 124-250 (270)
139 PF01238 PMI_typeI: Phosphoman 45.0 12 0.00027 33.2 1.5 21 117-137 252-272 (373)
140 PLN02868 acyl-CoA thioesterase 42.6 59 0.0013 29.1 5.5 48 72-126 34-83 (413)
141 PF15240 Pro-rich: Proline-ric 42.4 22 0.00048 28.6 2.4 31 6-37 2-33 (179)
142 PF12276 DUF3617: Protein of u 41.6 28 0.00061 26.6 2.9 38 3-40 2-39 (162)
143 PRK15206 long polar fimbrial p 41.5 25 0.00054 31.3 2.8 38 1-38 1-42 (359)
144 COG2731 EbgC Beta-galactosidas 40.6 1.8E+02 0.0038 22.8 7.8 58 83-140 64-137 (154)
145 PRK05467 Fe(II)-dependent oxyg 39.9 2.1E+02 0.0045 23.7 8.0 32 116-149 142-173 (226)
146 PRK11161 fumarate/nitrate redu 38.5 1.2E+02 0.0025 24.3 6.3 33 87-126 55-90 (235)
147 PRK11396 hypothetical protein; 38.3 2.2E+02 0.0047 23.1 12.4 105 37-154 5-113 (191)
148 KOG3416 Predicted nucleic acid 38.0 87 0.0019 23.9 4.9 64 63-137 13-80 (134)
149 PF05962 HutD: HutD; InterPro 36.9 39 0.00084 27.0 3.1 33 87-129 135-167 (184)
150 PHA02890 hypothetical protein; 36.3 1.4E+02 0.003 25.5 6.3 50 91-150 96-145 (278)
151 COG0664 Crp cAMP-binding prote 35.4 84 0.0018 24.0 4.8 51 71-128 25-78 (214)
152 PRK10626 hypothetical protein; 34.2 29 0.00063 29.2 2.0 30 1-33 1-30 (239)
153 PRK13395 ureidoglycolate hydro 34.1 2.4E+02 0.0052 22.4 9.8 69 81-150 72-142 (171)
154 COG3555 Aspartyl/asparaginyl b 33.1 38 0.00083 29.3 2.6 69 70-149 141-214 (291)
155 TIGR03697 NtcA_cyano global ni 32.1 86 0.0019 24.0 4.4 31 88-125 12-45 (193)
156 PLN03192 Voltage-dependent pot 32.0 81 0.0018 30.9 5.0 49 70-125 398-448 (823)
157 PF04831 Popeye: Popeye protei 31.7 2.3E+02 0.005 22.2 6.5 37 70-106 29-66 (153)
158 KOG4425 Uncharacterized conser 31.6 9.3 0.0002 35.5 -1.4 66 117-184 778-848 (900)
159 PRK10202 ebgC cryptic beta-D-g 31.2 2.4E+02 0.0052 21.6 8.7 20 117-136 108-127 (149)
160 KOG4281 Uncharacterized conser 31.2 24 0.00053 29.3 1.0 88 65-154 73-176 (236)
161 COG1741 Pirin-related protein 30.2 3.5E+02 0.0076 23.1 12.7 78 67-160 173-252 (276)
162 TIGR00752 slp outer membrane l 29.6 2.6E+02 0.0057 22.4 6.7 18 62-79 64-81 (182)
163 KOG0501 K+-channel KCNQ [Inorg 28.2 86 0.0019 30.2 4.2 25 83-107 584-609 (971)
164 PRK15137 DNA-specific endonucl 28.2 39 0.00084 28.3 1.8 24 1-24 1-24 (235)
165 PHA02067 hypothetical protein 27.1 53 0.0011 27.1 2.3 24 8-31 3-27 (221)
166 PF04074 DUF386: Domain of unk 27.0 2.8E+02 0.0061 21.0 8.6 22 81-102 62-84 (153)
167 PF08194 DIM: DIM protein; In 26.0 62 0.0013 19.1 1.9 13 4-16 2-14 (36)
168 KOG0498 K+-channel ERG and rel 25.9 98 0.0021 30.3 4.2 51 70-126 443-494 (727)
169 TIGR00022 uncharacterized prot 25.3 2.5E+02 0.0054 21.1 5.7 73 81-168 62-135 (142)
170 TIGR01762 chlorin-enz chlorina 24.7 1.3E+02 0.0029 25.6 4.5 49 116-165 210-261 (288)
171 PF12273 RCR: Chitin synthesis 24.6 44 0.00096 24.9 1.4 6 5-10 2-7 (130)
172 COG3822 ABC-type sugar transpo 23.1 92 0.002 25.5 3.0 37 70-106 153-193 (225)
173 PLN03024 Putative EG45-like do 22.9 71 0.0015 24.1 2.2 20 1-20 1-20 (125)
174 KOG0500 Cyclic nucleotide-gate 22.9 2.3E+02 0.0051 26.5 5.8 37 69-105 330-366 (536)
175 PRK10386 curli assembly protei 22.2 55 0.0012 25.0 1.5 30 1-31 1-30 (130)
176 PRK10884 SH3 domain-containing 22.1 71 0.0015 26.1 2.2 17 1-17 1-17 (206)
177 PF13605 DUF4141: Domain of un 21.7 63 0.0014 20.9 1.5 15 3-17 1-15 (55)
178 PF11587 Prion_bPrPp: Major pr 21.4 63 0.0014 18.1 1.2 16 1-16 1-17 (29)
179 PF01238 PMI_typeI: Phosphoman 20.9 1.7E+02 0.0037 25.9 4.6 41 63-104 332-372 (373)
180 PF03058 Sar8_2: Sar8.2 family 20.3 44 0.00095 23.9 0.6 36 1-37 1-39 (93)
181 PF05721 PhyH: Phytanoyl-CoA d 20.2 81 0.0017 24.0 2.1 25 116-140 181-206 (211)
182 PF13956 Ibs_toxin: Toxin Ibs, 20.1 61 0.0013 16.2 0.9 9 10-18 8-16 (19)
No 1
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=100.00 E-value=2.9e-43 Score=268.30 Aligned_cols=167 Identities=85% Similarity=1.435 Sum_probs=114.7
Q ss_pred cCcCcccCCCeeEecCCCCCCccCCCCcEEEEEEeeccCCceeEEEEEEEECCCCcCCceecCCcEEEEEEeCEEEEEEC
Q 029565 24 ASHCSIKGFPLVRNISELPQDNYGREGLAHITVAGSILHGMKEIEVWLQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLA 103 (191)
Q Consensus 24 ~~~~~~~~~~~V~~i~d~~~~~~~~~G~~~~~~~~~~~~g~~~~~~~~~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~ 103 (191)
+++|+++|.|+|+||+++++.+++++|...+++.+....|.+.+++++++|.||..+|.|+|..||+++||+|+|++.+.
T Consensus 1 a~~~~~~~~~~Vr~iselpq~~ygr~GLsH~TvAGa~~hGmkevEVwlQTfAPG~~TPiHRHsCEEVFvVLkG~GTl~l~ 80 (167)
T PF02041_consen 1 ASQCSIRGLPLVRNISELPQDNYGRPGLSHITVAGALLHGMKEVEVWLQTFAPGSATPIHRHSCEEVFVVLKGSGTLYLA 80 (167)
T ss_dssp ----------SEEEGGGS--B-TT-TTEEEEEEE-HHHH--SSEEEEEEEE-TT-B--EEEESS-EEEEEEE--EEEEE-
T ss_pred CCcCCCCCCceeEEhhhCccccccCCCcceEEeehhhhcCceeeeEEeeeecCCCCCCCccccccEEEEEEecceEEEEe
Confidence 47899999999999999999999999999999998777899999999999999999999999999999999999999998
Q ss_pred CeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEEEEEeCCCceeeecCCCCCcccccccCccccccccCC
Q 029565 104 SSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVVISRPPVKVFIYEDWSMPHTAAKLKFPYFWDEQCL 183 (191)
Q Consensus 104 ~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~v~~~p~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 183 (191)
. .....+||++++.+.++++++||.|..|+++|.++.|++++++++++|++++++|+||+|+++||+++|||.||+||.
T Consensus 81 ~-~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlqvlViiSrpPvkvf~y~dw~~phtaa~l~fp~~wd~~c~ 159 (167)
T PF02041_consen 81 S-SHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQVLVIISRPPVKVFIYDDWSMPHTAAKLKFPYYWDEQCL 159 (167)
T ss_dssp --SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EEEEEEEESSS--EEEESSTTS-GGG-EEESS-GGGHHHH
T ss_pred c-ccccCCCCceEEEecCCCeEEeCCCCcceeecCCCCcceEEEEEecCCCeEEEEeccccCcchhhhhcCCccccHhHh
Confidence 4 445678999999999999999999999999999955799999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 029565 184 QSPVKDEL 191 (191)
Q Consensus 184 ~~~~~~~~ 191 (191)
|++.||||
T Consensus 160 ~~~~~del 167 (167)
T PF02041_consen 160 QAPKKDEL 167 (167)
T ss_dssp HHT-----
T ss_pred ccCCccCC
Confidence 99999997
No 2
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=99.70 E-value=3.8e-16 Score=118.32 Aligned_cols=108 Identities=19% Similarity=0.279 Sum_probs=85.7
Q ss_pred CeeEecCCCCCCccCCC---CcEEEEEEeeccCCceeEEEEEEEECCCCcCCceecCCcEEEEEEeCEEEEE-EC-Ceee
Q 029565 33 PLVRNISELPQDNYGRE---GLAHITVAGSILHGMKEIEVWLQTFSPGTRTPIHRHSCEEIFIVLKGSGTLY-LA-SSSH 107 (191)
Q Consensus 33 ~~V~~i~d~~~~~~~~~---G~~~~~~~~~~~~g~~~~~~~~~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~-i~-~~~~ 107 (191)
++|++++|++...+... |..+..+. . ..+ ..+.+.+.+++||+..+.|.|...|++|||+|++++. ++ ++.
T Consensus 1 ~~v~~~~~~~~~~~~~~~~~~~~krll~-~-~~~-~~~~~~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~~- 76 (125)
T PRK13290 1 MIVRTLDEIEGTERDVKAGNWTSRRLLL-K-DDG-MGFSFHETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGEV- 76 (125)
T ss_pred CeEEEHHHccCcceeeecCCceEEEEEE-e-cCC-CCEEEEEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCEE-
Confidence 47888888888776432 33333332 2 233 4789999999999999999988779999999999999 75 876
Q ss_pred ecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEEEEEeCCCce
Q 029565 108 EKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVVISRPPVK 156 (191)
Q Consensus 108 ~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~v~~~p~~~ 156 (191)
+.+.+||++++|++.+|+++|. ++++++++.+++...
T Consensus 77 ---------~~L~aGD~i~~~~~~~H~~~N~---e~~~~l~v~tP~~~~ 113 (125)
T PRK13290 77 ---------HPIRPGTMYALDKHDRHYLRAG---EDMRLVCVFNPPLTG 113 (125)
T ss_pred ---------EEeCCCeEEEECCCCcEEEEcC---CCEEEEEEECCCCCC
Confidence 5788999999999999999996 379999999866544
No 3
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=99.64 E-value=1.7e-15 Score=102.19 Aligned_cols=69 Identities=39% Similarity=0.557 Sum_probs=64.1
Q ss_pred EEEECCCCcCCceecCCc-EEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEEEE
Q 029565 71 LQTFSPGTRTPIHRHSCE-EIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVV 149 (191)
Q Consensus 71 ~~~i~PG~~~~~H~H~~e-E~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~v 149 (191)
+++++||+..+.|+|+.. |++||++|++++.++++. +.+++||++++|+|.+|.++|.++ +++++++|
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~~~~----------~~l~~Gd~~~i~~~~~H~~~n~~~-~~~~~l~V 70 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTVDGER----------VELKPGDAIYIPPGVPHQVRNPGD-EPARFLVV 70 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEEETTEE----------EEEETTEEEEEETTSEEEEEEESS-SEEEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEEEccEE----------eEccCCEEEEECCCCeEEEEECCC-CCEEEEEE
Confidence 578999999999999966 999999999999999987 578899999999999999999999 69999988
Q ss_pred E
Q 029565 150 I 150 (191)
Q Consensus 150 ~ 150 (191)
+
T Consensus 71 ~ 71 (71)
T PF07883_consen 71 Y 71 (71)
T ss_dssp E
T ss_pred C
Confidence 5
No 4
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.62 E-value=5.8e-15 Score=130.06 Aligned_cols=140 Identities=21% Similarity=0.251 Sum_probs=103.5
Q ss_pred CCeeEecCCCCCCccCCCCcEEEEEEeeccCCceeEEEEEEEECCCCcCCceecC-CcEEEEEEeCEEEEEECCeeeecC
Q 029565 32 FPLVRNISELPQDNYGREGLAHITVAGSILHGMKEIEVWLQTFSPGTRTPIHRHS-CEEIFIVLKGSGTLYLASSSHEKH 110 (191)
Q Consensus 32 ~~~V~~i~d~~~~~~~~~G~~~~~~~~~~~~g~~~~~~~~~~i~PG~~~~~H~H~-~eE~~~Vl~G~~~v~i~~~~~~l~ 110 (191)
.++..++.+.+... ...|.. ..+........+.+.+...+++||+..++|+|+ .+|++||++|++++++.+..
T Consensus 212 ~~~~~~~~~~~p~~-~~gG~~-~~~~~~~~p~~~~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~---- 285 (367)
T TIGR03404 212 GPFTYHLSEQKPKQ-VPGGTV-RIADSTNFPVSKTIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAG---- 285 (367)
T ss_pred ccEEEEhhhCCcee-cCCceE-EEEChhhccCcceEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecC----
Confidence 34566776666522 223433 333333344456789999999999999999999 78999999999999985321
Q ss_pred CCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEEEEEeCCCceeeecCCCC--Ccc--cccccCcccccc
Q 029565 111 PGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVVISRPPVKVFIYEDWS--MPH--TAAKLKFPYFWD 179 (191)
Q Consensus 111 ~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~v~~~p~~~~~~~~~w~--~~~--~~~~~~~~~~~~ 179 (191)
|+.+++.+++||++++|+|..|+++|.|+ +++++|++++.+........+|+ .+. .++.+.++..-.
T Consensus 286 -g~~~~~~l~~GD~~~iP~g~~H~i~N~G~-e~l~fL~if~s~~~~~i~l~~~l~~~p~~vl~~~~~~~~~~~ 356 (367)
T TIGR03404 286 -GNARTFDYQAGDVGYVPRNMGHYVENTGD-ETLVFLEVFKADRFADVSLNQWLALTPPQLVAAHLNLDDEVI 356 (367)
T ss_pred -CcEEEEEECCCCEEEECCCCeEEEEECCC-CCEEEEEEECCCCCceeEHHHHHhhCCHHHHHHHhCcCHHHH
Confidence 11123689999999999999999999999 69999999988888777788998 343 356666655433
No 5
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=2.8e-14 Score=108.10 Aligned_cols=79 Identities=25% Similarity=0.385 Sum_probs=71.9
Q ss_pred eEEEEEEEECCCCcCCceecC-CcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcE
Q 029565 66 EIEVWLQTFSPGTRTPIHRHS-CEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDL 144 (191)
Q Consensus 66 ~~~~~~~~i~PG~~~~~H~H~-~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~ 144 (191)
.+.+.++.++||...++|.|. .+|++||++|++.++++++. +.+++||++++|+|++|+++|.|. .++
T Consensus 35 ~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~~~----------~~v~~gd~~~iP~g~~H~~~N~G~-~~L 103 (127)
T COG0662 35 RYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGGEE----------VEVKAGDSVYIPAGTPHRVRNTGK-IPL 103 (127)
T ss_pred cEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECCEE----------EEecCCCEEEECCCCcEEEEcCCC-cce
Confidence 788999999999998887777 79999999999999999987 588899999999999999999999 699
Q ss_pred EEEEEEeCCCc
Q 029565 145 QMLVVISRPPV 155 (191)
Q Consensus 145 ~~l~v~~~p~~ 155 (191)
.++.+..++..
T Consensus 104 ~liei~~p~~~ 114 (127)
T COG0662 104 VLIEVQSPPYL 114 (127)
T ss_pred EEEEEecCCcC
Confidence 99999875544
No 6
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.55 E-value=3.5e-14 Score=109.88 Aligned_cols=94 Identities=28% Similarity=0.397 Sum_probs=84.0
Q ss_pred ccCCceeEEEEEEEECCCCcC-CceecC-CcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCC--CcEEE
Q 029565 60 ILHGMKEIEVWLQTFSPGTRT-PIHRHS-CEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVN--DAHQV 135 (191)
Q Consensus 60 ~~~g~~~~~~~~~~i~PG~~~-~~H~H~-~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g--~~H~~ 135 (191)
...|.++|.+....++||..+ ..|+|. .+|++|||+|++++..|+.+ +.|+|||++-+|+| ..|.+
T Consensus 35 ~~~Gl~~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~~e----------~~lrpGD~~gFpAG~~~aHhl 104 (161)
T COG3837 35 DALGLKRFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDGGE----------TRLRPGDSAGFPAGVGNAHHL 104 (161)
T ss_pred hhcChhhcccceEEeCCCCccccccccccCceEEEEEcCceEEEECCee----------EEecCCceeeccCCCcceeEE
Confidence 356778999999999999865 579999 89999999999999999987 47889999999999 89999
Q ss_pred EeCCCCCcEEEEEEEeCCCceeeecCCCC
Q 029565 136 WNTNENEDLQMLVVISRPPVKVFIYEDWS 164 (191)
Q Consensus 136 ~N~g~~e~~~~l~v~~~p~~~~~~~~~w~ 164 (191)
+|.++ .++++|+|-+..+.+...|.|-.
T Consensus 105 iN~s~-~~~~yL~vG~r~~~d~i~YPd~~ 132 (161)
T COG3837 105 INRSD-VILRYLEVGTREPDDIITYPDLD 132 (161)
T ss_pred eecCC-ceEEEEEeccccccceeecCCcc
Confidence 99999 59999999988888888888744
No 7
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.52 E-value=2.4e-13 Score=114.70 Aligned_cols=107 Identities=17% Similarity=0.217 Sum_probs=85.0
Q ss_pred cCCCeeEecCCCCCCccCCCCcEEE-EEEeeccCCceeEEEEEEEECCCCcCCc-eecCCcEEEEEEeCEEEEEECCeee
Q 029565 30 KGFPLVRNISELPQDNYGREGLAHI-TVAGSILHGMKEIEVWLQTFSPGTRTPI-HRHSCEEIFIVLKGSGTLYLASSSH 107 (191)
Q Consensus 30 ~~~~~V~~i~d~~~~~~~~~G~~~~-~~~~~~~~g~~~~~~~~~~i~PG~~~~~-H~H~~eE~~~Vl~G~~~v~i~~~~~ 107 (191)
.+.++|.+.+|++....+..|.... .+. +.... .++.+.+++++||+.++. |.|..+|.+|||+|++.+.+|+++
T Consensus 143 ~~~~vvg~~~dv~~~~~~g~~~~~~~~ll-p~~~~-~~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~~g~~- 219 (260)
T TIGR03214 143 APELVVGNEKDIEPEPYEGMDDVILTTLL-PKELA-FDMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNLDNNW- 219 (260)
T ss_pred CCCeeecCHHHCCccccCCCCcEEEEEeC-chhcC-CCcEEEEEEECCCcccCCcccccceeEEEEEeceEEEEECCEE-
Confidence 3456888888888877654333332 222 32223 378899999999999996 556688999999999999999998
Q ss_pred ecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEEEE
Q 029565 108 EKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVV 149 (191)
Q Consensus 108 ~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~v 149 (191)
+.+.+||++++|++++|.++|.|+ +++++|.-
T Consensus 220 ---------~~V~~GD~i~i~~~~~h~~~~~G~-~~~~~l~y 251 (260)
T TIGR03214 220 ---------VPVEAGDYIWMGAYCPQACYAGGR-GEFRYLLY 251 (260)
T ss_pred ---------EEecCCCEEEECCCCCEEEEecCC-CcEEEEEE
Confidence 478899999999999999999999 69998874
No 8
>PRK11171 hypothetical protein; Provisional
Probab=99.49 E-value=6.2e-13 Score=112.58 Aligned_cols=109 Identities=18% Similarity=0.182 Sum_probs=86.0
Q ss_pred cCCCeeEecCCCCCCccC-CCCcEEEE-EEeeccCCceeEEEEEEEECCCCcCCce-ecCCcEEEEEEeCEEEEEECCee
Q 029565 30 KGFPLVRNISELPQDNYG-REGLAHIT-VAGSILHGMKEIEVWLQTFSPGTRTPIH-RHSCEEIFIVLKGSGTLYLASSS 106 (191)
Q Consensus 30 ~~~~~V~~i~d~~~~~~~-~~G~~~~~-~~~~~~~g~~~~~~~~~~i~PG~~~~~H-~H~~eE~~~Vl~G~~~v~i~~~~ 106 (191)
.+.+++.+..|++..+.. ..|..... +..+.... ..+++..++++||+.++.| .|..+|.+||++|++++.+++++
T Consensus 146 ~p~~~~~~~~d~~~~~~~g~~g~~~~~~~~~p~~~~-~~~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~~~~~ 224 (266)
T PRK11171 146 APEAFVGNESDIEPIPMPGTDGVWATTRLVDPEDLR-FDMHVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRLNNDW 224 (266)
T ss_pred CCCeEecchhcccccccCCCCCeEEEEEeeCchhcC-CCcEEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEECCEE
Confidence 346689999998886664 23332222 32232223 3579999999999999985 66699999999999999999998
Q ss_pred eecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEEEEE
Q 029565 107 HEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVVI 150 (191)
Q Consensus 107 ~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~v~ 150 (191)
+.+.+||+++++++.+|.+.|.++ +++++++.-
T Consensus 225 ----------~~l~~GD~i~~~~~~~h~~~N~g~-~~~~yl~~k 257 (266)
T PRK11171 225 ----------VEVEAGDFIWMRAYCPQACYAGGP-GPFRYLLYK 257 (266)
T ss_pred ----------EEeCCCCEEEECCCCCEEEECCCC-CcEEEEEEc
Confidence 477899999999999999999999 699999875
No 9
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.48 E-value=1.2e-12 Score=99.10 Aligned_cols=88 Identities=28% Similarity=0.367 Sum_probs=73.0
Q ss_pred ceeEEEEEEEECCCCcCCceecC-CcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCC
Q 029565 64 MKEIEVWLQTFSPGTRTPIHRHS-CEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENE 142 (191)
Q Consensus 64 ~~~~~~~~~~i~PG~~~~~H~H~-~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e 142 (191)
...+.+..++++||+..+.|+|+ .++.+|||+|+++++++++. +.+.+||++++|+|+.|.+.|.++ .
T Consensus 40 ~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~g~~----------~~l~~Gd~i~ip~g~~H~~~a~~~-~ 108 (131)
T COG1917 40 GENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLEGEK----------KELKAGDVIIIPPGVVHGLKAVED-E 108 (131)
T ss_pred CceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEecCCc----------eEecCCCEEEECCCCeeeeccCCC-C
Confidence 34788999999999999999999 88999999999999999776 478899999999999999999998 4
Q ss_pred cEEEEEEEeCCCceeeecCCCCC
Q 029565 143 DLQMLVVISRPPVKVFIYEDWSM 165 (191)
Q Consensus 143 ~~~~l~v~~~p~~~~~~~~~w~~ 165 (191)
+..++++... . ..+..+|..
T Consensus 109 ~~~~l~v~~~--~-~~~~~~~~~ 128 (131)
T COG1917 109 PMVLLLVFPL--V-DGFRVDLLE 128 (131)
T ss_pred ceeEEEEeee--c-cCCcccccc
Confidence 5677776654 2 224445554
No 10
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=99.44 E-value=1.3e-12 Score=104.61 Aligned_cols=78 Identities=23% Similarity=0.324 Sum_probs=68.6
Q ss_pred eeEEEEEEEECCCCcCC-ceecCCcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCc
Q 029565 65 KEIEVWLQTFSPGTRTP-IHRHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENED 143 (191)
Q Consensus 65 ~~~~~~~~~i~PG~~~~-~H~H~~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~ 143 (191)
..+++...+++||...+ .|+|+.+|++||++|+++++++++. +.+.+||++++|++++|+++|.++ ++
T Consensus 105 ~~~~~~~~~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~~~~~----------~~l~~Gd~~~~~~~~~H~~~n~~~-~~ 173 (185)
T PRK09943 105 RTLAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTINGQD----------YHLVAGQSYAINTGIPHSFSNTSA-GI 173 (185)
T ss_pred CeeEEEEEEccCCCCcccccccCCcEEEEEEEeEEEEEECCEE----------EEecCCCEEEEcCCCCeeeeCCCC-CC
Confidence 36788888999998754 6778899999999999999999987 578899999999999999999998 69
Q ss_pred EEEEEEEeCC
Q 029565 144 LQMLVVISRP 153 (191)
Q Consensus 144 ~~~l~v~~~p 153 (191)
++++++..++
T Consensus 174 ~~~l~~~~p~ 183 (185)
T PRK09943 174 CRIISAHTPT 183 (185)
T ss_pred eEEEEEeCCC
Confidence 9999987643
No 11
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=99.42 E-value=3.9e-12 Score=99.30 Aligned_cols=79 Identities=20% Similarity=0.306 Sum_probs=72.8
Q ss_pred eEEEEEEEECCCCcCCceecC-CcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcE
Q 029565 66 EIEVWLQTFSPGTRTPIHRHS-CEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDL 144 (191)
Q Consensus 66 ~~~~~~~~i~PG~~~~~H~H~-~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~ 144 (191)
.+.+.++++.||...++|.|. ..|.++|++|++.++++++. ..+.+||++++|+|..|++.|.|+ .++
T Consensus 62 ~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~~~~----------~~~~~g~sv~Ip~g~~H~i~n~g~-~~L 130 (151)
T PF01050_consen 62 GYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLDDEE----------FTLKEGDSVYIPRGAKHRIENPGK-TPL 130 (151)
T ss_pred CEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEECCEE----------EEEcCCCEEEECCCCEEEEECCCC-cCc
Confidence 689999999999999999999 79999999999999999987 478899999999999999999999 599
Q ss_pred EEEEEEeCCCc
Q 029565 145 QMLVVISRPPV 155 (191)
Q Consensus 145 ~~l~v~~~p~~ 155 (191)
.++.+.....+
T Consensus 131 ~~IEVq~G~~l 141 (151)
T PF01050_consen 131 EIIEVQTGEYL 141 (151)
T ss_pred EEEEEecCCCC
Confidence 99999875543
No 12
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=99.41 E-value=7.6e-12 Score=101.50 Aligned_cols=123 Identities=24% Similarity=0.303 Sum_probs=91.9
Q ss_pred cCCCeeEecCCCCCCccCCCCcEEEEEEeeccCCceeEEEEEEEECCCCcCCceecC-CcE--EEEEEeCEEEEEECCee
Q 029565 30 KGFPLVRNISELPQDNYGREGLAHITVAGSILHGMKEIEVWLQTFSPGTRTPIHRHS-CEE--IFIVLKGSGTLYLASSS 106 (191)
Q Consensus 30 ~~~~~V~~i~d~~~~~~~~~G~~~~~~~~~~~~g~~~~~~~~~~i~PG~~~~~H~H~-~eE--~~~Vl~G~~~v~i~~~~ 106 (191)
.+.+++..+...+... ..|.... .......|+ .-....+.||+...+|+|+ .+| ++|||+|++.+.+....
T Consensus 49 ~~~~~~yel~~~~~~~--~~g~L~~-~~t~~~pGs---~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~ 122 (209)
T COG2140 49 KEDDFVYELLESEPGE--RGGDLRL-DVTRIFPGS---AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPE 122 (209)
T ss_pred CCCceEEEeecccccc--cCCeEEE-EeeccCCCc---cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcCC
Confidence 5566666664443211 1232222 222234453 3346679999999999999 666 99999999999987754
Q ss_pred eecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEEEEEeCCCceeeecCCCC
Q 029565 107 HEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVVISRPPVKVFIYEDWS 164 (191)
Q Consensus 107 ~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~v~~~p~~~~~~~~~w~ 164 (191)
|+.+...+++||++|+|++-.|...|.|+ +|+.++.++..+....+....|.
T Consensus 123 -----G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd-~pLvf~~v~~~~~~~~y~~~~~~ 174 (209)
T COG2140 123 -----GEARVIAVRAGDVIYVPPGYGHYTINTGD-EPLVFLNVYPADAGQDYDLIAWL 174 (209)
T ss_pred -----CcEEEEEecCCcEEEeCCCcceEeecCCC-CCEEEEEEEeCCCCceeeeeehh
Confidence 66777899999999999999999999999 69999999987777666766776
No 13
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.40 E-value=3.7e-12 Score=115.55 Aligned_cols=78 Identities=22% Similarity=0.332 Sum_probs=70.8
Q ss_pred eEEEEEEEECCCCcCCceecC-CcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcE
Q 029565 66 EIEVWLQTFSPGTRTPIHRHS-CEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDL 144 (191)
Q Consensus 66 ~~~~~~~~i~PG~~~~~H~H~-~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~ 144 (191)
.+.+.+++++||+..+.|.|. .+|.+||++|+++++++++. +.+.+||++++|++.+|+++|.++ +++
T Consensus 375 ~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg~~----------~~l~~GDsi~ip~~~~H~~~N~g~-~~~ 443 (468)
T TIGR01479 375 RYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIGDET----------LLLTENESTYIPLGVIHRLENPGK-IPL 443 (468)
T ss_pred CEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEECCEE----------EEecCCCEEEECCCCcEEEEcCCC-CCE
Confidence 789999999999998888777 67888999999999999997 478899999999999999999999 699
Q ss_pred EEEEEEeCCC
Q 029565 145 QMLVVISRPP 154 (191)
Q Consensus 145 ~~l~v~~~p~ 154 (191)
+++++.+.+.
T Consensus 444 ~~i~v~~~~~ 453 (468)
T TIGR01479 444 ELIEVQSGSY 453 (468)
T ss_pred EEEEEEcCCC
Confidence 9999987553
No 14
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.39 E-value=3.2e-12 Score=94.82 Aligned_cols=84 Identities=25% Similarity=0.294 Sum_probs=72.3
Q ss_pred ccCCceeEEEEEEEECCCCcCCceecC-CcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeC
Q 029565 60 ILHGMKEIEVWLQTFSPGTRTPIHRHS-CEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNT 138 (191)
Q Consensus 60 ~~~g~~~~~~~~~~i~PG~~~~~H~H~-~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~ 138 (191)
...|...+++..++++||+....|.|. .|..+||++|+..++.|+.-- . ...++|||.+|||+|++|.-.|.
T Consensus 39 etvGas~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~rLE-~------ha~~~pGDf~YiPpgVPHqp~N~ 111 (142)
T COG4101 39 ETVGASGICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNRLE-E------HAEVGPGDFFYIPPGVPHQPANL 111 (142)
T ss_pred hhcccceeeEEEEeeCCCccccccccccccEEEEEEeceeeeeecccee-e------eEEecCCCeEEcCCCCCCccccc
Confidence 456778999999999999999999999 677999999999999998531 1 25789999999999999999999
Q ss_pred CCCCcEEEEEEEe
Q 029565 139 NENEDLQMLVVIS 151 (191)
Q Consensus 139 g~~e~~~~l~v~~ 151 (191)
++ +++..+++-+
T Consensus 112 S~-ep~s~vIaRs 123 (142)
T COG4101 112 ST-EPLSAVIARS 123 (142)
T ss_pred CC-CCeEEEEEcc
Confidence 98 7887776654
No 15
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.39 E-value=3.2e-12 Score=116.16 Aligned_cols=79 Identities=20% Similarity=0.301 Sum_probs=71.1
Q ss_pred eeEEEEEEEECCCCcCCceecC-CcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCc
Q 029565 65 KEIEVWLQTFSPGTRTPIHRHS-CEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENED 143 (191)
Q Consensus 65 ~~~~~~~~~i~PG~~~~~H~H~-~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~ 143 (191)
..+.+.+++++||+..+.|.|. .+|.+||++|+++++++|+. +.+.+||++++|+|.+|+++|.|+ ++
T Consensus 383 ~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg~~----------~~L~~GDSi~ip~g~~H~~~N~g~-~~ 451 (478)
T PRK15460 383 DRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDGDI----------KLLGENESIYIPLGATHCLENPGK-IP 451 (478)
T ss_pred CcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECCEE----------EEecCCCEEEECCCCcEEEEcCCC-CC
Confidence 3789999999999988777776 67999999999999999997 478899999999999999999999 69
Q ss_pred EEEEEEEeCCC
Q 029565 144 LQMLVVISRPP 154 (191)
Q Consensus 144 ~~~l~v~~~p~ 154 (191)
+++|++...+.
T Consensus 452 l~iI~V~~g~y 462 (478)
T PRK15460 452 LDLIEVRSGSY 462 (478)
T ss_pred EEEEEEEcCCC
Confidence 99999986544
No 16
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.37 E-value=1.1e-11 Score=95.75 Aligned_cols=85 Identities=21% Similarity=0.371 Sum_probs=70.2
Q ss_pred eEEEEEEEECCCCcCCceecC-CcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcE
Q 029565 66 EIEVWLQTFSPGTRTPIHRHS-CEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDL 144 (191)
Q Consensus 66 ~~~~~~~~i~PG~~~~~H~H~-~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~ 144 (191)
.+.+..++++||+..+.|+|+ .+|++||++|++.+.++++.- .....+.+.+||++++|+|..|.+.|.++ +++
T Consensus 29 ~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~----~~~~~~~l~~GD~~~ip~g~~H~~~n~~~-~~~ 103 (146)
T smart00835 29 GISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNG----NKVYDARLREGDVFVVPQGHPHFQVNSGD-ENL 103 (146)
T ss_pred ceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCC----CeEEEEEecCCCEEEECCCCEEEEEcCCC-CCE
Confidence 689999999999999999998 789999999999999866410 00012578999999999999999999998 699
Q ss_pred EEEEEEeCCCc
Q 029565 145 QMLVVISRPPV 155 (191)
Q Consensus 145 ~~l~v~~~p~~ 155 (191)
+++++.+..+.
T Consensus 104 ~~l~~~~~~~~ 114 (146)
T smart00835 104 EFVAFNTNDPN 114 (146)
T ss_pred EEEEEecCCCC
Confidence 99987654443
No 17
>PRK11171 hypothetical protein; Provisional
Probab=99.35 E-value=2.6e-11 Score=102.67 Aligned_cols=75 Identities=19% Similarity=0.269 Sum_probs=67.3
Q ss_pred eeEEEEEEEECCCCcCCceecC--CcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCC
Q 029565 65 KEIEVWLQTFSPGTRTPIHRHS--CEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENE 142 (191)
Q Consensus 65 ~~~~~~~~~i~PG~~~~~H~H~--~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e 142 (191)
..+++.+++++||+....|.|. .+|++||++|++++++++++ +.+.+||++++|++.+|+++|.++ +
T Consensus 59 ~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~~g~~----------~~L~~GDsi~~p~~~~H~~~N~g~-~ 127 (266)
T PRK11171 59 ATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTLEGKT----------HALSEGGYAYLPPGSDWTLRNAGA-E 127 (266)
T ss_pred CcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEECCEE----------EEECCCCEEEECCCCCEEEEECCC-C
Confidence 4799999999999987666554 58999999999999999987 478899999999999999999999 6
Q ss_pred cEEEEEEE
Q 029565 143 DLQMLVVI 150 (191)
Q Consensus 143 ~~~~l~v~ 150 (191)
+++++++.
T Consensus 128 ~a~~l~v~ 135 (266)
T PRK11171 128 DARFHWIR 135 (266)
T ss_pred CEEEEEEE
Confidence 99999986
No 18
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.32 E-value=4.6e-11 Score=100.89 Aligned_cols=89 Identities=12% Similarity=0.155 Sum_probs=72.2
Q ss_pred CcEEEEEEeeccCC-ceeEEEEEEEECCCCcCC-ceecCC-cEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEE
Q 029565 50 GLAHITVAGSILHG-MKEIEVWLQTFSPGTRTP-IHRHSC-EEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFH 126 (191)
Q Consensus 50 G~~~~~~~~~~~~g-~~~~~~~~~~i~PG~~~~-~H~H~~-eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ 126 (191)
+.+...+..+ ..| ...|++..++++||+..+ .+.|.. +|++||++|+++++++++. +.|.+||+++
T Consensus 41 ~~~~~~l~~P-~~g~~~~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~~g~~----------~~L~~Gd~~y 109 (260)
T TIGR03214 41 NTDIWILSRP-KLGFAATFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTAEGET----------HELREGGYAY 109 (260)
T ss_pred ccEEEEEcCC-CCCCCCcEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEECCEE----------EEECCCCEEE
Confidence 3444444444 334 147999999999998664 455664 8999999999999999997 4778999999
Q ss_pred ECCCCcEEEEeCCCCCcEEEEEEE
Q 029565 127 IPVNDAHQVWNTNENEDLQMLVVI 150 (191)
Q Consensus 127 ip~g~~H~~~N~g~~e~~~~l~v~ 150 (191)
+|++.+|+++|.++ ++++++++.
T Consensus 110 ~pa~~~H~~~N~~~-~~a~~l~v~ 132 (260)
T TIGR03214 110 LPPGSKWTLANAQA-EDARFFLYK 132 (260)
T ss_pred ECCCCCEEEEECCC-CCEEEEEEE
Confidence 99999999999999 699999986
No 19
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=99.27 E-value=7.1e-11 Score=95.49 Aligned_cols=83 Identities=25% Similarity=0.313 Sum_probs=68.8
Q ss_pred eeEEEEEEEECCCCc------CCceecC---CcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEE
Q 029565 65 KEIEVWLQTFSPGTR------TPIHRHS---CEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQV 135 (191)
Q Consensus 65 ~~~~~~~~~i~PG~~------~~~H~H~---~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~ 135 (191)
.++.+...+++||.. ++.|.|. ..|++||++|++.+.+++.. |....+.+.+||+++||+|..|++
T Consensus 66 ~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~-----G~~~~~~v~pGd~v~IPpg~~H~~ 140 (191)
T PRK04190 66 GDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPE-----GEARWIEMEPGTVVYVPPYWAHRS 140 (191)
T ss_pred CceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCC-----CcEEEEEECCCCEEEECCCCcEEe
Confidence 478999999999985 5569996 34999999999999987642 211236889999999999999999
Q ss_pred EeCCCCCcEEEEEEEeCC
Q 029565 136 WNTNENEDLQMLVVISRP 153 (191)
Q Consensus 136 ~N~g~~e~~~~l~v~~~p 153 (191)
.|.|+ +++++++++...
T Consensus 141 iN~G~-epl~fl~v~p~~ 157 (191)
T PRK04190 141 VNTGD-EPLVFLACYPAD 157 (191)
T ss_pred EECCC-CCEEEEEEEcCC
Confidence 99999 699999987544
No 20
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.17 E-value=2.6e-10 Score=100.69 Aligned_cols=94 Identities=21% Similarity=0.234 Sum_probs=74.0
Q ss_pred cCCceeEEEEEEEECCCCcCCceecCCcEEEEEEeCEEEEEECC---eeeecCCCCCceeeecCCeEEEECCCCcEEEEe
Q 029565 61 LHGMKEIEVWLQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLAS---SSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWN 137 (191)
Q Consensus 61 ~~g~~~~~~~~~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~~---~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N 137 (191)
..+.+.+++.++++.||+..++|+|...|++||++|++++.+.+ +.+ ...+.+||+++||+|..|.++|
T Consensus 61 lP~l~~ls~~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~--------~~~L~~GD~~~fP~g~~H~~~n 132 (367)
T TIGR03404 61 LPISTAIAGVNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNY--------IDDVGAGDLWYFPPGIPHSLQG 132 (367)
T ss_pred ccCcccccceEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEE--------EeEECCCCEEEECCCCeEEEEE
Confidence 44555688999999999999999999999999999999999853 332 1258999999999999999999
Q ss_pred CCCCCcEEEEEEEeCCCce---eeecCCCC
Q 029565 138 TNENEDLQMLVVISRPPVK---VFIYEDWS 164 (191)
Q Consensus 138 ~g~~e~~~~l~v~~~p~~~---~~~~~~w~ 164 (191)
.++ ++++++++....+. ..+..+|.
T Consensus 133 ~~~--~~~~l~vf~~~~f~~~~~~~~~~~l 160 (367)
T TIGR03404 133 LDE--GCEFLLVFDDGNFSEDGTFLVTDWL 160 (367)
T ss_pred CCC--CeEEEEEeCCcccCCcceeeHHHHH
Confidence 854 68888877654432 23445665
No 21
>PLN00212 glutelin; Provisional
Probab=99.08 E-value=2.7e-09 Score=97.09 Aligned_cols=85 Identities=15% Similarity=0.244 Sum_probs=64.9
Q ss_pred eEEEEEEEECCCCcCCceecCCcEEEEEEeCEEEEEEC--C--eeeec-CC----------C-----CCceeeecCCeEE
Q 029565 66 EIEVWLQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLA--S--SSHEK-HP----------G-----KPQEHFFFANSTF 125 (191)
Q Consensus 66 ~~~~~~~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~--~--~~~~l-~~----------g-----k~~d~~l~~GD~v 125 (191)
++.+.+.+|.|++-..+|.|...+++||++|++.+.+= | +++.- .. . +-+-..+++||++
T Consensus 79 Gv~~~R~~i~p~gL~lP~y~na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~~~~~~~~d~hqkv~~lr~GDVi 158 (493)
T PLN00212 79 GVFVIRRVIEPQGLLLPRYSNTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQSQSQKFRDEHQKIHQFRQGDVV 158 (493)
T ss_pred ceEEEEEEecCCcccCccccCCCeEEEEEeCeEEEEEEeCCCcchhhhhcccccccccccccccccccccceEeccCCEE
Confidence 67899999999999999999999999999999998431 1 11100 00 0 0001478999999
Q ss_pred EECCCCcEEEEeCCCCCcEEEEEEEe
Q 029565 126 HIPVNDAHQVWNTNENEDLQMLVVIS 151 (191)
Q Consensus 126 ~ip~g~~H~~~N~g~~e~~~~l~v~~ 151 (191)
.+|+|+.|++.|.|+ +++..+.++.
T Consensus 159 aiPaG~~hw~yN~Gd-~~~v~v~~~d 183 (493)
T PLN00212 159 ALPAGVAHWFYNDGD-APVVALYVYD 183 (493)
T ss_pred EECCCCeEEEEeCCC-CcEEEEEEEe
Confidence 999999999999999 5887777663
No 22
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=99.02 E-value=9.9e-09 Score=77.00 Aligned_cols=109 Identities=18% Similarity=0.267 Sum_probs=84.7
Q ss_pred CeeEecCCCCCCccC--CCCcEEEEEEeeccCCceeEEEEEEEECCCCcCCceecCCcEEEEEEeCEEEEEE--CCeeee
Q 029565 33 PLVRNISELPQDNYG--REGLAHITVAGSILHGMKEIEVWLQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYL--ASSSHE 108 (191)
Q Consensus 33 ~~V~~i~d~~~~~~~--~~G~~~~~~~~~~~~g~~~~~~~~~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i--~~~~~~ 108 (191)
.+||+++|+...++. .++.....+.. ..+|. +|++...+|.+|..+..|.-..-|.+||++|++++.. +|+.
T Consensus 1 MiVR~l~di~~Tdr~V~~~~w~SrRlll-~~Dgm-GFS~h~T~i~aGtet~~~YknHlEAvyci~G~Gev~~~~~G~~-- 76 (126)
T PF06339_consen 1 MIVRSLDDIRGTDRDVDAENWESRRLLL-KDDGM-GFSFHETTIYAGTETHIHYKNHLEAVYCIEGEGEVEDLDTGEV-- 76 (126)
T ss_pred CeEEEHHHhcCCceeEEcCCceEEEEEE-ccCCC-CEEEEEEEEeCCCeeEEEecCceEEEEEEeceEEEEEccCCcE--
Confidence 378898887765432 23333333322 24666 8999999999999999999889999999999999975 3443
Q ss_pred cCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEEEEEeCCCce
Q 029565 109 KHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVVISRPPVK 156 (191)
Q Consensus 109 l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~v~~~p~~~ 156 (191)
+.+.||..+.+..+..|.++..+ +++++||+++|-..
T Consensus 77 --------~~i~pGt~YaLd~hD~H~lra~~---dm~~vCVFnPpltG 113 (126)
T PF06339_consen 77 --------HPIKPGTMYALDKHDRHYLRAKT---DMRLVCVFNPPLTG 113 (126)
T ss_pred --------EEcCCCeEEecCCCccEEEEecC---CEEEEEEcCCCCcC
Confidence 58899999999999999999865 59999999866553
No 23
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=98.99 E-value=3e-09 Score=81.85 Aligned_cols=85 Identities=21% Similarity=0.394 Sum_probs=60.6
Q ss_pred eeEEEEEEEECCCCcCCceecCCcEEEEEEeCEEEEEEC--Cee---eecCCCCCceee--ecCCeEEEECCCCcEEEEe
Q 029565 65 KEIEVWLQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLA--SSS---HEKHPGKPQEHF--FFANSTFHIPVNDAHQVWN 137 (191)
Q Consensus 65 ~~~~~~~~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~--~~~---~~l~~gk~~d~~--l~~GD~v~ip~g~~H~~~N 137 (191)
..+.+...++.||+...+|+|...|++||++|++.+.+- +.. ... .... +++||++++|+|.+|.+.|
T Consensus 32 ~~~~~~~~~i~pg~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~-----~~~~v~l~~Gdv~~vP~G~~h~~~n 106 (144)
T PF00190_consen 32 NGVAVRRVLIEPGGLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQEEFRD-----FSQKVRLKAGDVFVVPAGHPHWIIN 106 (144)
T ss_dssp TTEEEEEEEEETTEEEEEEEESSEEEEEEEESEEEEEEEETTCSSSEEEE-----EEEEEEEETTEEEEE-TT-EEEEEE
T ss_pred cceEEEeeehhcCCccceeEeeeeEEeeeeccceEEEEEecCCcccccee-----eeceeeeecccceeeccceeEEEEc
Confidence 356777888899999999999889999999999997432 210 000 0134 8999999999999999999
Q ss_pred CCCCCcEEEEEEEeCCC
Q 029565 138 TNENEDLQMLVVISRPP 154 (191)
Q Consensus 138 ~g~~e~~~~l~v~~~p~ 154 (191)
.++++...++++....+
T Consensus 107 ~~~~~~~~~~~f~~~~~ 123 (144)
T PF00190_consen 107 DGDDEALVLIIFDTNNP 123 (144)
T ss_dssp CSSSSEEEEEEEEESST
T ss_pred CCCCCCEEEEEEECCCC
Confidence 98533444444444444
No 24
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.82 E-value=2.3e-08 Score=78.43 Aligned_cols=72 Identities=25% Similarity=0.314 Sum_probs=55.1
Q ss_pred EEEEE-CCCCcCCceecCCcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEEE
Q 029565 70 WLQTF-SPGTRTPIHRHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLV 148 (191)
Q Consensus 70 ~~~~i-~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~ 148 (191)
..+.+ .||.....|.|+.+|++|+++|++.+.+.++ |+.+++.+.+||++++|+|++|+.....+ ...|+
T Consensus 30 ~v~~vgGpn~R~d~H~~~tdE~FyqleG~~~l~v~d~------g~~~~v~L~eGd~flvP~gvpHsP~r~~~---t~~Lv 100 (159)
T TIGR03037 30 MVTVVGGPNARTDFHDDPGEEFFYQLKGEMYLKVTEE------GKREDVPIREGDIFLLPPHVPHSPQRPAG---SIGLV 100 (159)
T ss_pred EEEEeCCCCCCcccccCCCceEEEEEcceEEEEEEcC------CcEEEEEECCCCEEEeCCCCCcccccCCC---cEEEE
Confidence 33445 6777788999999999999999999976442 22335789999999999999999987543 44555
Q ss_pred EE
Q 029565 149 VI 150 (191)
Q Consensus 149 v~ 150 (191)
|-
T Consensus 101 IE 102 (159)
T TIGR03037 101 IE 102 (159)
T ss_pred EE
Confidence 43
No 25
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.78 E-value=4.5e-08 Score=72.11 Aligned_cols=69 Identities=26% Similarity=0.385 Sum_probs=50.6
Q ss_pred CCCcCCceecCCcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEEEEEeCCCc
Q 029565 76 PGTRTPIHRHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVVISRPPV 155 (191)
Q Consensus 76 PG~~~~~H~H~~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~v~~~p~~ 155 (191)
++...++|+|+.-+++||++|++++.++++. +.++|||.+++|+|..|++...++ ++...+++.-.+..
T Consensus 12 ~~~~~~~h~h~~~~i~~v~~G~~~~~~~~~~----------~~l~~g~~~li~p~~~H~~~~~~~-~~~~~~~i~~~~~~ 80 (136)
T PF02311_consen 12 PNFEFPPHWHDFYEIIYVLSGEGTLHIDGQE----------YPLKPGDLFLIPPGQPHSYYPDSN-EPWEYYWIYFSPDF 80 (136)
T ss_dssp TT-SEEEETT-SEEEEEEEEE-EEEEETTEE----------EEE-TT-EEEE-TTS-EEEEE-TT-SEEEEEEEEE---G
T ss_pred CCCccCCEECCCEEEEEEeCCEEEEEECCEE----------EEEECCEEEEecCCccEEEecCCC-CCEEEEEEEECHHH
Confidence 4455678999999999999999999999998 478899999999999999999887 48888888754443
No 26
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=98.74 E-value=3.1e-07 Score=75.88 Aligned_cols=108 Identities=13% Similarity=0.146 Sum_probs=70.4
Q ss_pred CcCcccCCCeeEecCCCCCCccCCCCcEEEEEEe--eccCCceeEEEEEEEECCCCcCCceecC-CcEEEEEEeCEEEEE
Q 029565 25 SHCSIKGFPLVRNISELPQDNYGREGLAHITVAG--SILHGMKEIEVWLQTFSPGTRTPIHRHS-CEEIFIVLKGSGTLY 101 (191)
Q Consensus 25 ~~~~~~~~~~V~~i~d~~~~~~~~~G~~~~~~~~--~~~~g~~~~~~~~~~i~PG~~~~~H~H~-~eE~~~Vl~G~~~v~ 101 (191)
.++-+.|..+|+- +.+....++........+.. ....+ ..+....+++.. ....||. .+|+.||++|+++++
T Consensus 115 ~~~~~~Gi~vVrg-~svk~~~fdg~~~~~v~~~d~~~~~d~-s~m~aGf~~~~~---~sf~wtl~~dEi~YVLEGe~~l~ 189 (233)
T PRK15457 115 SVTGKGGIKVIDG-SSVKFGRFDGAEPHCVGLTDLVTGDDG-SSMAAGFMQWEN---AFFPWTLNYDEIDMVLEGELHVR 189 (233)
T ss_pred ceeCCCceEEEEC-CeEEEeecCCCCcccEEeeeeeccCCC-CceeeEEEEEec---CccceeccceEEEEEEEeEEEEE
Confidence 3555677766644 33332233211111222222 22234 378888888874 3334555 899999999999999
Q ss_pred ECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEEEEE
Q 029565 102 LASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVVI 150 (191)
Q Consensus 102 i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~v~ 150 (191)
++|+. +.++|||++++|+|..|.+.+.+ .++++++.
T Consensus 190 IdG~t----------~~l~pGDvlfIPkGs~~hf~tp~---~aRflyV~ 225 (233)
T PRK15457 190 HEGET----------MIAKAGDVMFIPKGSSIEFGTPS---SVRFLYVA 225 (233)
T ss_pred ECCEE----------EEeCCCcEEEECCCCeEEecCCC---CeeEEEEE
Confidence 99987 57789999999999998886653 46776654
No 27
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.74 E-value=4.8e-08 Score=77.75 Aligned_cols=66 Identities=26% Similarity=0.333 Sum_probs=52.4
Q ss_pred CCCCcCCceecCCcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEEEE
Q 029565 75 SPGTRTPIHRHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVV 149 (191)
Q Consensus 75 ~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~v 149 (191)
-||....+|.|+.+|++|+++|++.+.+-++ |+.+++.+.+||++++|+|++|+..... ....|++
T Consensus 42 Gpn~r~d~H~~~tdE~FyqleG~~~l~v~d~------g~~~~v~L~eGd~fllP~gvpHsP~r~~---~tv~Lvi 107 (177)
T PRK13264 42 GPNARTDFHYDPGEEFFYQLEGDMYLKVQED------GKRRDVPIREGEMFLLPPHVPHSPQREA---GSIGLVI 107 (177)
T ss_pred cCCcccccccCCCceEEEEECCeEEEEEEcC------CceeeEEECCCCEEEeCCCCCcCCccCC---CeEEEEE
Confidence 6777889999999999999999999988321 2223578999999999999999997743 3455554
No 28
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=98.66 E-value=3.6e-07 Score=65.06 Aligned_cols=82 Identities=26% Similarity=0.369 Sum_probs=59.6
Q ss_pred CCCcEEEEEEeeccCCceeEEEEEEEECCCCcCCceecCCcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEE
Q 029565 48 REGLAHITVAGSILHGMKEIEVWLQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHI 127 (191)
Q Consensus 48 ~~G~~~~~~~~~~~~g~~~~~~~~~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~i 127 (191)
.+|+....+... .+..+..+.++.++||+..|.|.|...|.+|||+|+..- ++. .+.+||.++.
T Consensus 7 ~~Gv~~~~L~~~--~~~~g~~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d--~~~------------~~~~G~~~~~ 70 (91)
T PF12973_consen 7 RPGVSVKPLHRD--EGETGERVSLLRLEPGASLPRHRHPGGEEILVLEGELSD--GDG------------RYGAGDWLRL 70 (91)
T ss_dssp STTEEEEEEEEC--SSSTTEEEEEEEE-TTEEEEEEEESS-EEEEEEECEEEE--TTC------------EEETTEEEEE
T ss_pred CCCEEEEEeccC--CCcccCEEEEEEECCCCCcCccCCCCcEEEEEEEEEEEE--CCc------------cCCCCeEEEe
Confidence 467666666542 111245778899999999999999998889999999873 443 4579999999
Q ss_pred CCCCcEEEEeCCCCCcEEEEE
Q 029565 128 PVNDAHQVWNTNENEDLQMLV 148 (191)
Q Consensus 128 p~g~~H~~~N~g~~e~~~~l~ 148 (191)
|+|..|.... + +.+.+++
T Consensus 71 p~g~~h~~~s--~-~gc~~~v 88 (91)
T PF12973_consen 71 PPGSSHTPRS--D-EGCLILV 88 (91)
T ss_dssp -TTEEEEEEE--S-SCEEEEE
T ss_pred CCCCccccCc--C-CCEEEEE
Confidence 9999999995 3 3566655
No 29
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=98.62 E-value=7.3e-07 Score=63.17 Aligned_cols=73 Identities=18% Similarity=0.343 Sum_probs=55.7
Q ss_pred eEEEEEEEECCCCcCC-ceecCCcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcE
Q 029565 66 EIEVWLQTFSPGTRTP-IHRHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDL 144 (191)
Q Consensus 66 ~~~~~~~~i~PG~~~~-~H~H~~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~ 144 (191)
.+....+.|+||+.=+ .+.+...-++||++|.+++++++.. +.+.+||++++|+|-.+.+.|.++ +++
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti~~~~----------f~v~~G~~F~VP~gN~Y~i~N~~~-~~a 79 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTIHETS----------FVVTKGGSFQVPRGNYYSIKNIGN-EEA 79 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEETTEE----------EEEETT-EEEE-TT-EEEEEE-SS-S-E
T ss_pred CceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEEcCcE----------EEEeCCCEEEECCCCEEEEEECCC-CcE
Confidence 6788899999998644 4666677799999999999999987 578899999999999999999999 589
Q ss_pred EEEEE
Q 029565 145 QMLVV 149 (191)
Q Consensus 145 ~~l~v 149 (191)
+++.+
T Consensus 80 ~LfF~ 84 (85)
T PF11699_consen 80 KLFFV 84 (85)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88765
No 30
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=98.61 E-value=1.8e-07 Score=77.00 Aligned_cols=73 Identities=22% Similarity=0.236 Sum_probs=62.0
Q ss_pred EEEEEEEECCCCcCCceecCCcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEE
Q 029565 67 IEVWLQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQM 146 (191)
Q Consensus 67 ~~~~~~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~ 146 (191)
..+..+.++||...+.|.|.+.|+.+||+|... ++.. .+.+||.+..|++..|+.++.++ +++..
T Consensus 127 ~~v~Ll~i~pG~~~p~H~H~G~E~tlVLeG~f~---de~g-----------~y~~Gd~i~~p~~~~H~p~a~~~-~~Cic 191 (215)
T TIGR02451 127 ARVRLLYIEAGQSIPQHTHKGFELTLVLHGAFS---DETG-----------VYGVGDFEEADGSVQHQPRTVSG-GDCLC 191 (215)
T ss_pred cEEEEEEECCCCccCCCcCCCcEEEEEEEEEEE---cCCC-----------ccCCCeEEECCCCCCcCcccCCC-CCeEE
Confidence 366889999999999999999999999999953 3321 56799999999999999999988 68999
Q ss_pred EEEEeCCC
Q 029565 147 LVVISRPP 154 (191)
Q Consensus 147 l~v~~~p~ 154 (191)
+.+...|-
T Consensus 192 l~v~dapl 199 (215)
T TIGR02451 192 LAVLDAPL 199 (215)
T ss_pred EEEecCCc
Confidence 99886554
No 31
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=98.59 E-value=9.1e-08 Score=83.47 Aligned_cols=79 Identities=22% Similarity=0.288 Sum_probs=68.1
Q ss_pred eEEEEEEEECCCCcCCceecCCcEEEEEEeCEEE-EEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcE
Q 029565 66 EIEVWLQTFSPGTRTPIHRHSCEEIFIVLKGSGT-LYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDL 144 (191)
Q Consensus 66 ~~~~~~~~i~PG~~~~~H~H~~eE~~~Vl~G~~~-v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~ 144 (191)
.+...++.++||...+.|+|...-+.+|++|++. ..++|+. +.+++||++++|++.+|...|.++ +++
T Consensus 80 tl~a~~q~l~pGe~~~~HRht~sAl~~vveG~G~~t~V~g~~----------~~~~~gD~~~tP~w~wH~H~n~~d-~~~ 148 (335)
T TIGR02272 80 SLYAGLQLILPGEVAPSHRHTQSALRFIVEGKGAFTAVDGER----------TTMHPGDFIITPSWTWHDHGNPGD-EPM 148 (335)
T ss_pred hHHhhhEEeCCCCCCCccccccceEEEEEEcCceEEEECCEE----------EeeeCCCEEEeCCCeeEecccCCC-CcE
Confidence 4567888999999999999999999999999996 6789987 588999999999999999999998 587
Q ss_pred EEEEEEeCCCc
Q 029565 145 QMLVVISRPPV 155 (191)
Q Consensus 145 ~~l~v~~~p~~ 155 (191)
..|.....|.+
T Consensus 149 ~wld~lD~Pl~ 159 (335)
T TIGR02272 149 IWLDGLDIPLV 159 (335)
T ss_pred EEEecCCHHHH
Confidence 76666655444
No 32
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=98.56 E-value=2.3e-06 Score=70.09 Aligned_cols=105 Identities=18% Similarity=0.230 Sum_probs=76.8
Q ss_pred cccCCCeeEecCCCCCCccCCCCcEEEEEEeeccCC-ceeEEEEEEEECCCCc-CCceecC-CcEEEEEEeCEEEEEECC
Q 029565 28 SIKGFPLVRNISELPQDNYGREGLAHITVAGSILHG-MKEIEVWLQTFSPGTR-TPIHRHS-CEEIFIVLKGSGTLYLAS 104 (191)
Q Consensus 28 ~~~~~~~V~~i~d~~~~~~~~~G~~~~~~~~~~~~g-~~~~~~~~~~i~PG~~-~~~H~H~-~eE~~~Vl~G~~~v~i~~ 104 (191)
..+|..+|+++ +|.+ .+.+...+..+ ..| ...|.-..+++.||+. ..+..-+ .+-++||++|++++..+|
T Consensus 28 Ipk~~~iVts~--Lp~w----~~tr~wilsrP-~~Gf~~tF~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~G 100 (264)
T COG3257 28 IPKGVMIVTSI--LPFW----ENTRAWILSRP-LSGFAATFVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAEG 100 (264)
T ss_pred ecCCcEEEEee--cCCC----CCceEEEEecc-ccchhhhhhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEcC
Confidence 34555577773 4432 24444444443 333 1257778889988774 4456666 566999999999999999
Q ss_pred eeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEEEEE
Q 029565 105 SSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVVI 150 (191)
Q Consensus 105 ~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~v~ 150 (191)
+. +.+++|+.+++|+|..|.++|... ++.++.++-
T Consensus 101 ~t----------h~l~eggyaylPpgs~~~~~N~~~-~~~rfhw~r 135 (264)
T COG3257 101 KT----------HALREGGYAYLPPGSGWTLRNAQK-EDSRFHWIR 135 (264)
T ss_pred eE----------EEeccCCeEEeCCCCcceEeeccC-CceEEEEEe
Confidence 97 477899999999999999999998 699999985
No 33
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.41 E-value=6.1e-06 Score=66.28 Aligned_cols=87 Identities=24% Similarity=0.326 Sum_probs=51.9
Q ss_pred eEEEEEEEECCCCc------CCceecCC-------cEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCc
Q 029565 66 EIEVWLQTFSPGTR------TPIHRHSC-------EEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDA 132 (191)
Q Consensus 66 ~~~~~~~~i~PG~~------~~~H~H~~-------eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~ 132 (191)
.+......++||.- +.-|.|+. -|+++|++|++.+.+.+..-. ..+...-+.+.+||.++||++-.
T Consensus 49 ~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~-~~~~~~~v~~~~G~~v~IPp~ya 127 (182)
T PF06560_consen 49 NLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGD-DVGDVIAVEAKPGDVVYIPPGYA 127 (182)
T ss_dssp -EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS------EEEEEE-TTEEEEE-TT-E
T ss_pred eEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCC-cceeEEEEEeCCCCEEEECCCce
Confidence 47777888899842 23487774 699999999999866432210 00000014789999999999999
Q ss_pred EEEEeCCCCCcEEEEEEEeCCC
Q 029565 133 HQVWNTNENEDLQMLVVISRPP 154 (191)
Q Consensus 133 H~~~N~g~~e~~~~l~v~~~p~ 154 (191)
|...|+|+ +++.+...+...-
T Consensus 128 H~tIN~g~-~~L~~~~~~~~~~ 148 (182)
T PF06560_consen 128 HRTINTGD-EPLVFAAWVPRDA 148 (182)
T ss_dssp EEEEE-SS-S-EEEEEEEETT-
T ss_pred EEEEECCC-CcEEEEEEEecCC
Confidence 99999999 6999999886544
No 34
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=98.39 E-value=1.1e-06 Score=76.70 Aligned_cols=77 Identities=21% Similarity=0.372 Sum_probs=65.9
Q ss_pred EEEEEEEECCCCcCCceecCCcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEE
Q 029565 67 IEVWLQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQM 146 (191)
Q Consensus 67 ~~~~~~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~ 146 (191)
+....+.++||..+..|+|....+++|++|+|...++++. +.+++||++.+|++..|.+.|. +++.+
T Consensus 250 i~~~~q~L~~G~~t~~~r~T~s~Vf~VieG~G~s~ig~~~----------~~W~~gD~f~vPsW~~~~h~a~---~da~L 316 (335)
T TIGR02272 250 IGAFIQLLPKGFRTATYRSTDATVFCVVEGRGQVRIGDAV----------FRFSPKDVFVVPSWHPVRFEAS---DDAVL 316 (335)
T ss_pred HHHHHhccCCCCCCCCccccccEEEEEEeCeEEEEECCEE----------EEecCCCEEEECCCCcEecccC---CCeEE
Confidence 4455677999999999999999999999999999999987 6899999999999999998874 25777
Q ss_pred EEEEeCCCce
Q 029565 147 LVVISRPPVK 156 (191)
Q Consensus 147 l~v~~~p~~~ 156 (191)
+.+...|..+
T Consensus 317 f~~~D~Pll~ 326 (335)
T TIGR02272 317 FSFSDRPVQQ 326 (335)
T ss_pred EEecCHHHHH
Confidence 7777766655
No 35
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=98.34 E-value=5.1e-06 Score=68.03 Aligned_cols=110 Identities=17% Similarity=0.181 Sum_probs=83.9
Q ss_pred cCcccCCCeeEecCCCCCCccCC-CCcEEEEEEeeccCCceeEEEEEEEECCCCcCCc-eecCCcEEEEEEeCEEEEEEC
Q 029565 26 HCSIKGFPLVRNISELPQDNYGR-EGLAHITVAGSILHGMKEIEVWLQTFSPGTRTPI-HRHSCEEIFIVLKGSGTLYLA 103 (191)
Q Consensus 26 ~~~~~~~~~V~~i~d~~~~~~~~-~G~~~~~~~~~~~~g~~~~~~~~~~i~PG~~~~~-H~H~~eE~~~Vl~G~~~v~i~ 103 (191)
.....+.+++.|-+|++...+.. .|..... ..+.... -++-+..++++||+.+|. .+|-.|.=+|||+|++...++
T Consensus 142 dG~~~P~~~~~Ne~ei~~~~m~gtdg~~att-v~P~d~r-~Dmhv~ivsFePGa~ip~aEtHvmEHGlyvLeGk~vYrLn 219 (264)
T COG3257 142 EGVQAPELVSGNESEIEPSPMEGTDGVIATT-VLPKELR-FDMHVHIVSFEPGASIPYAETHVMEHGLYVLEGKGVYRLN 219 (264)
T ss_pred cCccCCcceecChhhCCCCCCCCCCCeEEEe-eCccccC-cceEEEEEEecCCcccchhhhhhhhcceEEEecceEEeec
Confidence 44556777788877777755542 2222222 3333444 378899999999999994 788888899999999999999
Q ss_pred CeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEEE
Q 029565 104 SSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLV 148 (191)
Q Consensus 104 ~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~ 148 (191)
+.. +.+.+||.+++-+..+......|.. ..++|.
T Consensus 220 ~dw----------v~V~aGD~mwm~A~cpQacyagG~g-~frYLl 253 (264)
T COG3257 220 NNW----------VPVEAGDYIWMGAYCPQACYAGGRG-AFRYLL 253 (264)
T ss_pred Cce----------EEeecccEEEeeccChhhhccCCCC-ceEEEE
Confidence 998 5788999999999999999988873 666665
No 36
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=98.25 E-value=4.8e-06 Score=71.49 Aligned_cols=63 Identities=11% Similarity=0.081 Sum_probs=53.4
Q ss_pred EEEEEEECCCCcCCceecCCcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCC
Q 029565 68 EVWLQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNE 140 (191)
Q Consensus 68 ~~~~~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~ 140 (191)
.+.....+|....++|||..-|+.|+++|++.+.++|+. +.+.+||.+++++|++|.+...++
T Consensus 27 ~~~~~~~~~~~m~~~HwH~e~Ei~yv~~G~~~~~i~g~~----------~~l~~Gd~ili~s~~~H~~~~~~~ 89 (302)
T PRK10371 27 RLEIEFRPPHIMPTSHWHGQVEVNVPFDGDVEYLINNEK----------VQINQGHITLFWACTPHQLTDPGN 89 (302)
T ss_pred eeEEEeeCCCCCCCCCccccEEEEEecCCcEEEEECCEE----------EEEcCCcEEEEecCCcccccccCC
Confidence 334455667777889999999999999999999999997 578899999999999999876544
No 37
>PRK13501 transcriptional activator RhaR; Provisional
Probab=98.25 E-value=4.2e-06 Score=70.94 Aligned_cols=57 Identities=25% Similarity=0.275 Sum_probs=49.1
Q ss_pred ECCCCcCCceecCCcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCC
Q 029565 74 FSPGTRTPIHRHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNE 140 (191)
Q Consensus 74 i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~ 140 (191)
..+....++|+|..-|++||++|++++.++++. +.+.+||.+++|+|..|.+...++
T Consensus 25 ~~~~~~~~~H~H~~~ei~~i~~G~~~~~i~~~~----------~~l~~g~~~~I~p~~~H~~~~~~~ 81 (290)
T PRK13501 25 RYPQETFVEHTHQFCEIVIVWRGNGLHVLNDHP----------YRITCGDVFYIQAADHHSYESVHD 81 (290)
T ss_pred CCCCCCCccccccceeEEEEecCceEEEECCee----------eeecCCeEEEEcCCCcccccccCC
Confidence 444555678999999999999999999999987 477899999999999999886543
No 38
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.22 E-value=2.1e-06 Score=73.31 Aligned_cols=80 Identities=26% Similarity=0.424 Sum_probs=69.7
Q ss_pred eEEEEEEEECCCCcCCceecCCcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEE
Q 029565 66 EIEVWLQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQ 145 (191)
Q Consensus 66 ~~~~~~~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~ 145 (191)
.+...++.++||.....|+|...-++.|.+|++...|++++ |.+.+||++.+|++.+|.+.|.+ +++.
T Consensus 260 tI~a~mqlL~~Gf~~~~~r~t~s~iy~V~eGsg~~~Ig~~r----------f~~~~~D~fvVPsW~~~~~~~gs--~da~ 327 (351)
T COG3435 260 TIGAFMQLLPPGFHGKAHRHTDSTIYHVVEGSGYTIIGGER----------FDWSAGDIFVVPSWAWHEHVNGS--EDAV 327 (351)
T ss_pred hHHHHHHhcCCcccCCceeccCCEEEEEEecceeEEECCEE----------eeccCCCEEEccCcceeecccCC--cceE
Confidence 44566778999999999999999999999999999999998 58889999999999999999974 4788
Q ss_pred EEEEEeCCCcee
Q 029565 146 MLVVISRPPVKV 157 (191)
Q Consensus 146 ~l~v~~~p~~~~ 157 (191)
++++...|-.+.
T Consensus 328 LFsfsD~PV~ea 339 (351)
T COG3435 328 LFSFSDRPVMEA 339 (351)
T ss_pred EEecCCcHHHHH
Confidence 998877666553
No 39
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=98.18 E-value=1.3e-05 Score=62.55 Aligned_cols=70 Identities=11% Similarity=0.110 Sum_probs=52.6
Q ss_pred eEEEEEEEECCCCcCCceecC-CcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcE
Q 029565 66 EIEVWLQTFSPGTRTPIHRHS-CEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDL 144 (191)
Q Consensus 66 ~~~~~~~~i~PG~~~~~H~H~-~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~ 144 (191)
.+....+++... +..+.- .+|+.|||+|++++.++|+. +...+||+++||.|..-.+...+ .+
T Consensus 76 ~l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~~~G~~----------~~A~~GDvi~iPkGs~I~fst~~---~a 139 (152)
T PF06249_consen 76 RLSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEISIDGQT----------VTAKPGDVIFIPKGSTITFSTPD---YA 139 (152)
T ss_dssp SSEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEEETTEE----------EEEETT-EEEE-TT-EEEEEEEE---EE
T ss_pred ceeeEEEEEeCC---CccEEeecceEEEEEEeEEEEEECCEE----------EEEcCCcEEEECCCCEEEEecCC---CE
Confidence 677778888752 455666 89999999999999999987 57789999999999998886543 46
Q ss_pred EEEEEEe
Q 029565 145 QMLVVIS 151 (191)
Q Consensus 145 ~~l~v~~ 151 (191)
+++.+..
T Consensus 140 ~~~Yv~y 146 (152)
T PF06249_consen 140 RFFYVTY 146 (152)
T ss_dssp EEEEEEE
T ss_pred EEEEEEC
Confidence 7777643
No 40
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=98.16 E-value=1.7e-05 Score=66.73 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=46.9
Q ss_pred CCcCCceecCCcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCC
Q 029565 77 GTRTPIHRHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNE 140 (191)
Q Consensus 77 G~~~~~H~H~~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~ 140 (191)
+...++|+|..-|++||++|++.+.++++. +.+.+||.+++|+|+.|......+
T Consensus 33 ~~~~~~H~H~~~ei~~v~~G~~~~~i~~~~----------~~l~~g~l~~i~p~~~H~~~~~~~ 86 (278)
T PRK10296 33 ESVSGLHQHDYYEFTLVLTGRYYQEINGKR----------VLLERGDFVFIPLGSHHQSFYEFG 86 (278)
T ss_pred hcCCCCcccccEEEEEEEeceEEEEECCEE----------EEECCCcEEEeCCCCccceeeeCC
Confidence 334579999999999999999999999997 477899999999999998765544
No 41
>PRK13500 transcriptional activator RhaR; Provisional
Probab=98.13 E-value=1.4e-05 Score=68.85 Aligned_cols=56 Identities=25% Similarity=0.313 Sum_probs=48.8
Q ss_pred CCCCcCCceecCCcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCC
Q 029565 75 SPGTRTPIHRHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNE 140 (191)
Q Consensus 75 ~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~ 140 (191)
-|....+.|+|..-|++||++|++.+.++++. +.+.+||+++++++..|.+....+
T Consensus 56 ~~~~~~~~H~H~~~el~~v~~G~g~~~v~~~~----------~~l~~Gdl~~I~~~~~H~~~~~~~ 111 (312)
T PRK13500 56 YPQDVFAEHTHDFCELVIVWRGNGLHVLNDRP----------YRITRGDLFYIHADDKHSYASVND 111 (312)
T ss_pred CCCCCCCccccceEEEEEEEcCeEEEEECCEE----------EeecCCeEEEECCCCeecccccCC
Confidence 34445689999999999999999999999997 477899999999999999887554
No 42
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=98.12 E-value=3.4e-05 Score=60.66 Aligned_cols=66 Identities=15% Similarity=0.219 Sum_probs=45.9
Q ss_pred CceecCCcEEEEEEeCEEEEEEC--CeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEEEEEeCCC
Q 029565 81 PIHRHSCEEIFIVLKGSGTLYLA--SSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVVISRPP 154 (191)
Q Consensus 81 ~~H~H~~eE~~~Vl~G~~~v~i~--~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~v~~~p~ 154 (191)
..|.|..+|+-|+++|++.+.+. +..+ + .+.+.+||.+.+|+|+.|++.-..+ ..++.+-++..++
T Consensus 86 ~EH~H~deEvR~i~~G~g~Fdvr~~~~~w-i------ri~~e~GDli~vP~g~~HrF~~~~~-~~i~aiRlF~~~~ 153 (157)
T PF03079_consen 86 EEHTHEDEEVRYIVDGSGYFDVRDGDDVW-I------RILCEKGDLIVVPAGTYHRFTLGES-PYIKAIRLFKDEP 153 (157)
T ss_dssp S-EEESS-EEEEEEECEEEEEEE-TTCEE-E------EEEEETTCEEEE-TT--EEEEESTT-SSEEEEEEESSCG
T ss_pred eeEecChheEEEEeCcEEEEEEEcCCCEE-E------EEEEcCCCEEecCCCCceeEEcCCC-CcEEEEEeecCCC
Confidence 47999999999999999998663 2222 1 1478899999999999999987655 4677776665443
No 43
>PLN00212 glutelin; Provisional
Probab=98.12 E-value=1.8e-05 Score=72.43 Aligned_cols=80 Identities=8% Similarity=0.063 Sum_probs=64.1
Q ss_pred eEEEEEEEECCCCcCCceecC-CcEEEEEEeCEEEEEE-CCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCc
Q 029565 66 EIEVWLQTFSPGTRTPIHRHS-CEEIFIVLKGSGTLYL-ASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENED 143 (191)
Q Consensus 66 ~~~~~~~~i~PG~~~~~H~H~-~eE~~~Vl~G~~~v~i-~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~ 143 (191)
++.+.+..|.||+..++|+|+ ..+++||++|++.+.+ +..-..+.. -.|.+||+++||.|.+|..+.. + +.
T Consensus 347 ~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~-----~~L~~GdvfVVPqg~~v~~~A~-~-eg 419 (493)
T PLN00212 347 QMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFN-----GVLRPGQLLIIPQHYAVLKKAE-R-EG 419 (493)
T ss_pred CeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEE-----EEEcCCCEEEECCCCeEEEeec-C-Cc
Confidence 688999999999999999999 8999999999999965 322122222 3799999999999999988765 4 35
Q ss_pred EEEEEEEeC
Q 029565 144 LQMLVVISR 152 (191)
Q Consensus 144 ~~~l~v~~~ 152 (191)
+.+++..+.
T Consensus 420 fe~v~F~tn 428 (493)
T PLN00212 420 CQYIAFKTN 428 (493)
T ss_pred eEEEEeecC
Confidence 888877643
No 44
>PRK13502 transcriptional activator RhaR; Provisional
Probab=98.09 E-value=1.8e-05 Score=66.66 Aligned_cols=60 Identities=22% Similarity=0.266 Sum_probs=51.1
Q ss_pred EEEECCCCcCCceecCCcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCC
Q 029565 71 LQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNE 140 (191)
Q Consensus 71 ~~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~ 140 (191)
.....|....++|+|..-|++||++|++.+.++++. +.+.+||.+++|+|..|.+...++
T Consensus 22 ~~~~~~~~~~~~H~h~~~~l~~v~~G~~~~~i~~~~----------~~l~~g~l~li~~~~~H~~~~~~~ 81 (282)
T PRK13502 22 VADRYPQDVFAEHTHEFCELVMVWRGNGLHVLNERP----------YRITRGDLFYIRAEDKHSYTSVND 81 (282)
T ss_pred EecCCCCCCCCccccceEEEEEEecCcEEEEECCEE----------EeecCCcEEEECCCCcccccccCC
Confidence 444556666789999999999999999999999997 477899999999999999876444
No 45
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=98.07 E-value=1.4e-05 Score=60.87 Aligned_cols=71 Identities=30% Similarity=0.369 Sum_probs=41.3
Q ss_pred ECCCCcCCceecC-CcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCC-eEEEECCCCcEEEEeCCCCCcEEEEEEEe
Q 029565 74 FSPGTRTPIHRHS-CEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFAN-STFHIPVNDAHQVWNTNENEDLQMLVVIS 151 (191)
Q Consensus 74 i~PG~~~~~H~H~-~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~G-D~v~ip~g~~H~~~N~g~~e~~~~l~v~~ 151 (191)
.++|..-+.|.|. ..|.++|++|+.++.+++.. +.+++.+... ..+++|+|.+|.+.|.++ ++.++++.+
T Consensus 40 ~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~------~~~~~~L~~~~~~L~Ippg~w~~~~~~s~--~svlLv~as 111 (131)
T PF05523_consen 40 VPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGR------EEEEFILDEPNKGLYIPPGVWHGIKNFSE--DSVLLVLAS 111 (131)
T ss_dssp --SS--EEEEEESS--EEEEEEES-EEEEEE-SS-------EEEEEE--TTEEEEE-TT-EEEEE---T--T-EEEEEES
T ss_pred CCCCCcccccccccccEEEEEEeCEEEEEEecCC------CcEEEEECCCCeEEEECCchhhHhhccCC--CcEEEEEcC
Confidence 5555557899999 88999999999999876532 1123444444 589999999999999987 477777655
Q ss_pred C
Q 029565 152 R 152 (191)
Q Consensus 152 ~ 152 (191)
.
T Consensus 112 ~ 112 (131)
T PF05523_consen 112 E 112 (131)
T ss_dssp S
T ss_pred C
Confidence 3
No 46
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.06 E-value=0.00013 Score=56.79 Aligned_cols=105 Identities=20% Similarity=0.167 Sum_probs=69.2
Q ss_pred cCCCeeEecCCCCCC-cc--CCCCcEEEEEEeeccCCceeEEEEEEEECCCCcCCceecCCcEEEEEEeCEEEEEECCee
Q 029565 30 KGFPLVRNISELPQD-NY--GREGLAHITVAGSILHGMKEIEVWLQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLASSS 106 (191)
Q Consensus 30 ~~~~~V~~i~d~~~~-~~--~~~G~~~~~~~~~~~~g~~~~~~~~~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~~~~ 106 (191)
++.-.|.+++..... .. +.|............+|. ++.+..+...+ ...+ -.-..+|+-|||+|++.+.++|+.
T Consensus 61 ksgikvvk~s~vk~~~r~d~gqp~~V~~tdLvt~~~g~-~l~aG~m~~~~-~tf~-wtl~yDe~d~VlEGrL~V~~~g~t 137 (176)
T COG4766 61 KSGIKVVKLSSVKFGLRFDTGQPDCVYTTDLVTEQEGS-RLGAGLMEMKN-TTFP-WTLNYDEIDYVLEGRLHVRIDGRT 137 (176)
T ss_pred CCceeEEecccceeEeeecCCCCCeEEeeceeecccCC-ccccceeeecc-ccCc-ceecccceeEEEeeeEEEEEcCCe
Confidence 444456666555443 22 123223332222334454 67777887877 3322 334489999999999999999986
Q ss_pred eecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEEEEE
Q 029565 107 HEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVVI 150 (191)
Q Consensus 107 ~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~v~ 150 (191)
+..+|||++|+|.|..-.|.-++. ++++.+.
T Consensus 138 ----------v~a~aGDvifiPKgssIefst~ge---a~flyvt 168 (176)
T COG4766 138 ----------VIAGAGDVIFIPKGSSIEFSTTGE---AKFLYVT 168 (176)
T ss_pred ----------EecCCCcEEEecCCCeEEEeccce---EEEEEEE
Confidence 577899999999999888876553 7887764
No 47
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.02 E-value=9.1e-06 Score=69.47 Aligned_cols=77 Identities=25% Similarity=0.252 Sum_probs=65.3
Q ss_pred EEEEEEECCCCcCCceecCCcEEEEEEeCEEEE-EECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEE
Q 029565 68 EVWLQTFSPGTRTPIHRHSCEEIFIVLKGSGTL-YLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQM 146 (191)
Q Consensus 68 ~~~~~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v-~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~ 146 (191)
....+-|.||...|.|+|...-+-||++|++-. .++|+. ..+.+||.+..|.+.+|...|.++ +|+..
T Consensus 93 yAglQlilPGEvApsHrHsqsAlRFvveG~Ga~T~VdGer----------~~M~~GDfilTP~w~wHdHgn~g~-eP~iW 161 (351)
T COG3435 93 YAGLQLILPGEVAPSHRHNQSALRFVVEGKGAYTVVDGER----------TPMEAGDFILTPAWTWHDHGNEGT-EPCIW 161 (351)
T ss_pred HhhhheecCcccCCcccccccceEEEEeccceeEeecCce----------eeccCCCEEEccCceeccCCCCCC-CceEE
Confidence 456677999999999999999999999999977 467776 478899999999999999999998 79988
Q ss_pred EEEEeCCCc
Q 029565 147 LVVISRPPV 155 (191)
Q Consensus 147 l~v~~~p~~ 155 (191)
+--..-|.+
T Consensus 162 lDgLDiplv 170 (351)
T COG3435 162 LDGLDIPLV 170 (351)
T ss_pred EcccchHHH
Confidence 876544433
No 48
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=97.98 E-value=2.7e-05 Score=65.56 Aligned_cols=54 Identities=22% Similarity=0.287 Sum_probs=47.5
Q ss_pred CCcCCceecC-CcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCC
Q 029565 77 GTRTPIHRHS-CEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNE 140 (191)
Q Consensus 77 G~~~~~H~H~-~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~ 140 (191)
+...++|+|. .-|++|+++|.+.+.+++.. +.+.+||.+++|+++.|.+....+
T Consensus 33 ~~~~~~H~H~~~~~l~~~~~G~~~~~~~~~~----------~~l~~g~~~ii~~~~~H~~~~~~~ 87 (287)
T TIGR02297 33 GRNMPVHFHDRYYQLHYLTEGSIALQLDEHE----------YSEYAPCFFLTPPSVPHGFVTDLD 87 (287)
T ss_pred CCCCCCcccccceeEEEEeeCceEEEECCEE----------EEecCCeEEEeCCCCccccccCCC
Confidence 3457899998 79999999999999999987 477899999999999999987655
No 49
>PRK13503 transcriptional activator RhaS; Provisional
Probab=97.97 E-value=1.7e-05 Score=66.38 Aligned_cols=55 Identities=24% Similarity=0.319 Sum_probs=48.1
Q ss_pred CCCCcCCceecCCcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCC
Q 029565 75 SPGTRTPIHRHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTN 139 (191)
Q Consensus 75 ~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g 139 (191)
.+....+.|+|..-|++||++|.+++.++++. +.+.+||++++|++..|.+.+..
T Consensus 23 ~~~~~~~~H~H~~~ei~~v~~G~~~~~i~~~~----------~~l~~g~~~~i~~~~~h~~~~~~ 77 (278)
T PRK13503 23 LPQAAFPEHHHDFHEIVIVEHGTGIHVFNGQP----------YTLSGGTVCFVRDHDRHLYEHTD 77 (278)
T ss_pred CccccccccccCceeEEEEecCceeeEecCCc----------ccccCCcEEEECCCccchhhhcc
Confidence 34456789999999999999999999999987 47789999999999999987653
No 50
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=97.89 E-value=0.00012 Score=56.70 Aligned_cols=77 Identities=25% Similarity=0.346 Sum_probs=47.4
Q ss_pred EEEECCCCcCCceecCCcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEEEEE
Q 029565 71 LQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVVI 150 (191)
Q Consensus 71 ~~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~v~ 150 (191)
++.=-|+.+...|.-+.+|++|-++|.+.+.+-++ |+.+|+.+++||++++|++++|+-.-..+ ..-+++--
T Consensus 37 mvVGGPN~R~DyHine~eE~FyQ~kG~m~Lkv~e~------g~~kdi~I~EGe~fLLP~~vpHsP~R~~~--tiGLViEr 108 (151)
T PF06052_consen 37 MVVGGPNQRTDYHINETEEFFYQLKGDMCLKVVED------GKFKDIPIREGEMFLLPANVPHSPQRPAD--TIGLVIER 108 (151)
T ss_dssp EEEESSB--SSEEE-SS-EEEEEEES-EEEEEEET------TEEEEEEE-TTEEEEE-TT--EEEEE-TT---EEEEEEE
T ss_pred EEEcCCCCCCccccCCcceEEEEEeCcEEEEEEeC------CceEEEEeCCCcEEecCCCCCCCCcCCCC--cEEEEEEe
Confidence 34467788899999999999999999999965432 44557899999999999999999876654 34444433
Q ss_pred eCCCc
Q 029565 151 SRPPV 155 (191)
Q Consensus 151 ~~p~~ 155 (191)
.++..
T Consensus 109 ~R~~~ 113 (151)
T PF06052_consen 109 KRPEG 113 (151)
T ss_dssp ---TT
T ss_pred ccCCC
Confidence 44443
No 51
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.86 E-value=8.5e-05 Score=58.71 Aligned_cols=69 Identities=17% Similarity=0.209 Sum_probs=50.9
Q ss_pred CceecCCcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEEEEEeCCCc
Q 029565 81 PIHRHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVVISRPPV 155 (191)
Q Consensus 81 ~~H~H~~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~v~~~p~~ 155 (191)
..|.|..+|+-|++.|.|.+.+-+.. |+.-++...+||.+.+|+|+.|++.-..+ --..-+-++..++.
T Consensus 89 ~EH~H~d~EvRy~vaG~GiF~v~~~d-----~~~~~i~c~~gDLI~vP~gi~HwFtlt~~-~~f~AvRlF~~~~g 157 (181)
T COG1791 89 QEHLHTDDEVRYFVAGEGIFDVHSPD-----GKVYQIRCEKGDLISVPPGIYHWFTLTES-PNFKAVRLFTEPEG 157 (181)
T ss_pred HHhccCCceEEEEEecceEEEEECCC-----CcEEEEEEccCCEEecCCCceEEEEccCC-CcEEEEEEeeCCCC
Confidence 36999999999999999998764432 22224678899999999999999987655 24555555554444
No 52
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=97.75 E-value=0.00016 Score=49.63 Aligned_cols=60 Identities=22% Similarity=0.205 Sum_probs=43.1
Q ss_pred eEEEEEEEECCCCcCCceecCCcEEEEEEeCEEEEEEC-CeeeecCCCCCceeeecCCeEEEECCCCcEEEEe
Q 029565 66 EIEVWLQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLA-SSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWN 137 (191)
Q Consensus 66 ~~~~~~~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~-~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N 137 (191)
.+....+.-.||.. +.+.. .+|++|||+|+++++.+ |+. +.+.|||++++|+|..-.+.-
T Consensus 6 ~~~~g~w~~~pg~~-~~~~~-~~E~~~vleG~v~it~~~G~~----------~~~~aGD~~~~p~G~~~~w~v 66 (74)
T PF05899_consen 6 VFSAGVWECTPGKF-PWPYP-EDEFFYVLEGEVTITDEDGET----------VTFKAGDAFFLPKGWTGTWEV 66 (74)
T ss_dssp SEEEEEEEEECEEE-EEEES-SEEEEEEEEEEEEEEETTTEE----------EEEETTEEEEE-TTEEEEEEE
T ss_pred CEEEEEEEECCcee-EeeCC-CCEEEEEEEeEEEEEECCCCE----------EEEcCCcEEEECCCCEEEEEE
Confidence 35556666777652 33333 39999999999999985 444 588999999999998665543
No 53
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=97.73 E-value=0.00015 Score=55.53 Aligned_cols=69 Identities=29% Similarity=0.378 Sum_probs=51.5
Q ss_pred CCcCCc-eecC-CcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEEEEEeCCC
Q 029565 77 GTRTPI-HRHS-CEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVVISRPP 154 (191)
Q Consensus 77 G~~~~~-H~H~-~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~v~~~p~ 154 (191)
|+..+. |.|. ..|++.|++|++.+.++|.. | ++..+..||++.+|+|+.|.--..+. + |.++-.+|+
T Consensus 52 g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~-----G--~el~v~~GDvlliPAGvGH~rl~sS~--D--F~VvGaYp~ 120 (163)
T COG4297 52 GGVFNYHHYHSGAHEVLGVLRGQAGLQIGGAD-----G--QELEVGEGDVLLIPAGVGHCRLHSSA--D--FQVVGAYPP 120 (163)
T ss_pred ccccccccccCCcceEEEEecceeEEEecCCC-----C--ceeeecCCCEEEEecCcccccccCCC--C--eEEEcccCC
Confidence 444454 6888 78999999999999999864 3 24688999999999999996544333 3 555556666
Q ss_pred ce
Q 029565 155 VK 156 (191)
Q Consensus 155 ~~ 156 (191)
..
T Consensus 121 G~ 122 (163)
T COG4297 121 GQ 122 (163)
T ss_pred cc
Confidence 64
No 54
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=97.72 E-value=0.00047 Score=54.95 Aligned_cols=94 Identities=27% Similarity=0.341 Sum_probs=58.9
Q ss_pred eEEEEEEEECCCCcCCceecCC-cEEEEEEeCEEEEEE---CCe-eeecCCCCCceeeecCCeEEEECCCCcEEEEeCCC
Q 029565 66 EIEVWLQTFSPGTRTPIHRHSC-EEIFIVLKGSGTLYL---ASS-SHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNE 140 (191)
Q Consensus 66 ~~~~~~~~i~PG~~~~~H~H~~-eE~~~Vl~G~~~v~i---~~~-~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~ 140 (191)
.+++..+..+||..++.|-|.. .=++.|++|+.+-+. .+. ...+... .......+|.+..++++..|++.|.+.
T Consensus 74 ~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~iH~v~n~s~ 152 (175)
T PF05995_consen 74 RFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELV-GRERLLPGGVTYIFDPHGIHRVENPSG 152 (175)
T ss_dssp T-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEEC-EEEEEETTTEEEEBTTTBEEEEEES-S
T ss_pred CeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCccccc-CceEecCCCeEEecCCCCeEEeccCCC
Confidence 6999999999999999999994 568899999987643 333 0000000 112345677788889999999999873
Q ss_pred CCcEEEEEEEeCCCceeeec
Q 029565 141 NEDLQMLVVISRPPVKVFIY 160 (191)
Q Consensus 141 ~e~~~~l~v~~~p~~~~~~~ 160 (191)
++++.-|=+|++|.-+...|
T Consensus 153 ~~~avSLHvYspPl~~~~~y 172 (175)
T PF05995_consen 153 DEPAVSLHVYSPPLEQCRIY 172 (175)
T ss_dssp SS-EEEEEEEES--SEEEEE
T ss_pred CCCEEEEEEcCCChhhcccc
Confidence 36899999998766555444
No 55
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=97.59 E-value=0.00054 Score=57.70 Aligned_cols=73 Identities=18% Similarity=0.210 Sum_probs=45.6
Q ss_pred EEEEEEEECCCCcCCceecCCcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEE
Q 029565 67 IEVWLQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQM 146 (191)
Q Consensus 67 ~~~~~~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~ 146 (191)
....++.+++|-..|+|.|..++-+|||+|.+ ..|+..-. ...+.+|...+.|+|..|.-...++ +.+.+
T Consensus 36 ~~~~~vkf~~g~~~pph~H~~~~~~~Vi~G~~--~~~~~~a~-------~~~l~~Gsy~~~PaG~~h~~~~~~~-~~~~~ 105 (251)
T PF14499_consen 36 PSGMRVKFPAGFSSPPHIHNADYRGTVISGEL--HNGDPKAA-------AMWLPAGSYWFQPAGEPHITAAEGE-TNLLF 105 (251)
T ss_dssp -EEEEEEE-TT-EE--BEESS-EEEEEEESEE--EETTEE------------E-TTEEEEE-TT-EEEETTS-E-E-EEE
T ss_pred cceEEEEcCCCccCCCcceeeeEEEEEEEeEE--EcCCCccc-------ceecCCCceEeccCCCceeeeccCc-cEEEE
Confidence 35677889999999999999999999999974 44665311 1258899999999999998877766 34555
Q ss_pred EEE
Q 029565 147 LVV 149 (191)
Q Consensus 147 l~v 149 (191)
+.+
T Consensus 106 ~e~ 108 (251)
T PF14499_consen 106 IEI 108 (251)
T ss_dssp EE-
T ss_pred EEe
Confidence 544
No 56
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.16 E-value=0.00075 Score=53.13 Aligned_cols=52 Identities=23% Similarity=0.248 Sum_probs=43.5
Q ss_pred CceecCCcEEEEEEeCEEEEEECC---eeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCC
Q 029565 81 PIHRHSCEEIFIVLKGSGTLYLAS---SSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNE 140 (191)
Q Consensus 81 ~~H~H~~eE~~~Vl~G~~~v~i~~---~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~ 140 (191)
..|.|..+|+-||++|++.+.+.+ +++. +-+..||.|++|+|+.|+|.-..+
T Consensus 87 EEhlh~deeiR~il~GtgYfDVrd~dd~WIR--------i~vekGDlivlPaGiyHRFTtt~~ 141 (179)
T KOG2107|consen 87 EEHLHEDEEIRYILEGTGYFDVRDKDDQWIR--------IFVEKGDLIVLPAGIYHRFTTTPS 141 (179)
T ss_pred HHhcCchhheEEEeecceEEeeccCCCCEEE--------EEEecCCEEEecCcceeeeecCch
Confidence 469999999999999999987653 4432 578899999999999999987655
No 57
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=97.15 E-value=0.015 Score=48.03 Aligned_cols=95 Identities=18% Similarity=0.203 Sum_probs=55.2
Q ss_pred CccCCCCcEEEEEEeecc---CCceeEEEEEEEECCCCcCCceecC-CcEEEEEE--------------------eCEEE
Q 029565 44 DNYGREGLAHITVAGSIL---HGMKEIEVWLQTFSPGTRTPIHRHS-CEEIFIVL--------------------KGSGT 99 (191)
Q Consensus 44 ~~~~~~G~~~~~~~~~~~---~g~~~~~~~~~~i~PG~~~~~H~H~-~eE~~~Vl--------------------~G~~~ 99 (191)
.++..-|..-++++-... ...+.+.=..+.+.+|+.+|.|.|. -.|=++.- +..++
T Consensus 61 gdF~~~GL~LfTlRNG~~~~~~~~k~YAEKim~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~ 140 (225)
T PF07385_consen 61 GDFDKTGLTLFTLRNGNLNDLKYPKPYAEKIMIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVT 140 (225)
T ss_dssp S-TTTB-EEEEEEE---TTS-S----EEEEEEEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EE
T ss_pred CchHhcCCEEEEEeCCCcccCCCCCcchhhheeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeE
Confidence 344445655555543211 1224566678889999999999998 34422221 23455
Q ss_pred EEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCC
Q 029565 100 LYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNE 140 (191)
Q Consensus 100 v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~ 140 (191)
+.+||..+.+.+|. .+.|.||.+|.++||..|+|+..+.
T Consensus 141 V~~DG~~~t~~aG~--~l~L~PGESiTL~Pg~yH~Fw~e~g 179 (225)
T PF07385_consen 141 VPVDGIRRTVPAGT--QLRLNPGESITLPPGIYHWFWGEGG 179 (225)
T ss_dssp EEETTEEEEE-TT---EEEE-TT-EEEE-TTEEEEEEE-TT
T ss_pred EecCCcEEEecCCc--eEEeCCCCeEeeCCCCeeeEEecCC
Confidence 78888888888885 4799999999999999999999765
No 58
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=96.94 E-value=0.0046 Score=52.22 Aligned_cols=59 Identities=12% Similarity=0.223 Sum_probs=44.5
Q ss_pred cCCcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEEEEEeCC
Q 029565 85 HSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVVISRP 153 (191)
Q Consensus 85 H~~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~v~~~p 153 (191)
...-++.++++|++.+.++++. +.+.+||.+++|++.+|.+....+.....+.+++-.|
T Consensus 47 ~~~~~i~~~~~G~~~~~~~~~~----------~~~~~g~~i~i~p~~~h~~~~~~~~~~~~~~~~~~~~ 105 (290)
T PRK10572 47 MKGYILNLTIRGQGVIFNGGRA----------FVCRPGDLLLFPPGEIHHYGRHPDSDEWYHQWVYFRP 105 (290)
T ss_pred ccceEEEEEEeccEEEecCCee----------EecCCCCEEEECCCCceeeccCCCCCceeEEEEEecC
Confidence 3345688999999999999987 4778999999999999998775543334555554333
No 59
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=96.61 E-value=0.0051 Score=45.96 Aligned_cols=62 Identities=15% Similarity=0.094 Sum_probs=47.3
Q ss_pred eEEEEEEEECCCCcCCceecC-CcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCC
Q 029565 66 EIEVWLQTFSPGTRTPIHRHS-CEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTN 139 (191)
Q Consensus 66 ~~~~~~~~i~PG~~~~~H~H~-~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g 139 (191)
.....++.-.||.. +.+- ..|+.++|+|+.+++-++.+ .+.+++||++++|+|-.=.++-..
T Consensus 44 ~~~~GiWe~TpG~~---r~~y~~~E~chil~G~v~~T~d~Ge---------~v~~~aGD~~~~~~G~~g~W~V~E 106 (116)
T COG3450 44 QVETGIWECTPGKF---RVTYDEDEFCHILEGRVEVTPDGGE---------PVEVRAGDSFVFPAGFKGTWEVLE 106 (116)
T ss_pred CeeEeEEEecCccc---eEEcccceEEEEEeeEEEEECCCCe---------EEEEcCCCEEEECCCCeEEEEEee
Confidence 45666777777754 3444 58999999999999987754 268899999999999876666543
No 60
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=96.59 E-value=0.0027 Score=52.01 Aligned_cols=58 Identities=28% Similarity=0.369 Sum_probs=49.0
Q ss_pred ECCCCcCCceecCCcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEe
Q 029565 74 FSPGTRTPIHRHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWN 137 (191)
Q Consensus 74 i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N 137 (191)
=-|+.....|..+.+|++|=.+|.+.+.+=++ |+.+|+.++.||++.+|++++|+-.-
T Consensus 40 GGPN~RkdyHieegeE~FyQ~KGdMvLKVie~------g~~rDivI~qGe~flLParVpHSPqR 97 (279)
T KOG3995|consen 40 GGPNTRKDYHIEEGEEVFYQLKGDMVLKVLEQ------GKHRDVVIRQGEIFLLPARVPHSPQR 97 (279)
T ss_pred cCCCcccccccCCcchhheeecCceEEeeecc------CcceeeEEecCcEEEeccCCCCChhh
Confidence 45667788999999999999999999976544 56778999999999999999997543
No 61
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=96.55 E-value=0.038 Score=44.69 Aligned_cols=73 Identities=21% Similarity=0.311 Sum_probs=50.1
Q ss_pred eEEEEEEEECCCCcCCceecC--CcEE-------EEEEeC------------EEEEEECCeeeecCCCCCceeeecCCeE
Q 029565 66 EIEVWLQTFSPGTRTPIHRHS--CEEI-------FIVLKG------------SGTLYLASSSHEKHPGKPQEHFFFANST 124 (191)
Q Consensus 66 ~~~~~~~~i~PG~~~~~H~H~--~eE~-------~~Vl~G------------~~~v~i~~~~~~l~~gk~~d~~l~~GD~ 124 (191)
.+.=.++.+.+|..+|.|+|. .+.+ ++|-=+ ..++-++|......+|. ...+.||.+
T Consensus 85 ~yaeKiM~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~~~ag~--~lkL~PGes 162 (225)
T COG3822 85 CYAEKIMHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQTHTAGS--QLKLSPGES 162 (225)
T ss_pred cchheeEEeccCCcCcccccccchhhhhhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEEeccce--eEEECCCCc
Confidence 445578889999999999998 2222 222111 12344555555555553 478999999
Q ss_pred EEECCCCcEEEEeCCC
Q 029565 125 FHIPVNDAHQVWNTNE 140 (191)
Q Consensus 125 v~ip~g~~H~~~N~g~ 140 (191)
+.+|||..|+|+..+.
T Consensus 163 itL~Pg~~HsFwae~g 178 (225)
T COG3822 163 ITLPPGLYHSFWAEEG 178 (225)
T ss_pred EecCCCceeeeeecCC
Confidence 9999999999999765
No 62
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=96.53 E-value=0.011 Score=49.91 Aligned_cols=110 Identities=18% Similarity=0.139 Sum_probs=54.9
Q ss_pred ccCCCeeEecCCCCCCccC---CCCcEEEEEEeeccCCceeEEEEEEEECCCCcCCceecCCcEEEEEEeCEEEEEECCe
Q 029565 29 IKGFPLVRNISELPQDNYG---REGLAHITVAGSILHGMKEIEVWLQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLASS 105 (191)
Q Consensus 29 ~~~~~~V~~i~d~~~~~~~---~~G~~~~~~~~~~~~g~~~~~~~~~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~~~ 105 (191)
.+..-++.+.+++...... .+|....++-.....| .+.-.+..+|.|.....|.|...|-.||++|++++...+.
T Consensus 132 ~~~~ivwld~~dl~W~~~~~~~~~g~~~a~Lwgd~~~g--~~~gll~kLPagf~g~i~~h~~~eraVvI~G~~~~~~~~~ 209 (251)
T PF14499_consen 132 DKDNIVWLDASDLEWISAPPGPPPGAQIAFLWGDPNTG--QYTGLLLKLPAGFTGRIHTHASNERAVVISGELDYQSYGA 209 (251)
T ss_dssp GGG-EEEEECCCS--EE-SSSTT-SEEEEEEEE-TTS---EE-EEEEE-SSEE--SEEE--S-EEEEEEEEEEEETTEEE
T ss_pred ccccceEeccccCCccccCCCCCCcceEEEEecCCCCC--ceeeEEEEcCCCCcCceeccCCceEEEEEEeEEEEeeccc
Confidence 3455566676666543322 2354444444432222 4555667788888889999999999999999999954332
Q ss_pred eeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEEEEE
Q 029565 106 SHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVVI 150 (191)
Q Consensus 106 ~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~v~ 150 (191)
. + ...|.+|..+.-|++..|... .++ +++.+++-.
T Consensus 210 ~------~--~~~L~~GSYf~s~~~~~H~~~-~~e-~~~vlyIRt 244 (251)
T PF14499_consen 210 S------N--FGTLDPGSYFGSPGHITHGIF-ITE-DECVLYIRT 244 (251)
T ss_dssp E------T--TEEEEE-TT-EE--E-------EES-S-EEEEEEE
T ss_pred C------C--CccccCCcccccCCccccccc-ccC-CCEEEEEEE
Confidence 1 0 137889999999999999998 555 356666543
No 63
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=96.32 E-value=0.021 Score=50.34 Aligned_cols=73 Identities=21% Similarity=0.266 Sum_probs=57.3
Q ss_pred ceeEEEEEEEECCCCcCCceecCCcEEEEEEeCEEEEEEC-CeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCC
Q 029565 64 MKEIEVWLQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLA-SSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENE 142 (191)
Q Consensus 64 ~~~~~~~~~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~-~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e 142 (191)
..+|++....+++|.++-.-.-++--+++|++|++.+..+ +.. ..+.+||++|||++.+-.+...++
T Consensus 330 i~eF~v~~~~v~~g~~~~~~~~~~~SIllv~~G~g~l~~~t~~~----------~~v~rG~V~fI~a~~~i~~~~~sd-- 397 (411)
T KOG2757|consen 330 IEEFAVLETKVPTGESYKFPGVDGPSILLVLKGSGILKTDTDSK----------ILVNRGDVLFIPANHPIHLSSSSD-- 397 (411)
T ss_pred CcceeEEEeecCCCceEEeecCCCceEEEEEecceEEecCCCCc----------eeeccCcEEEEcCCCCceeeccCc--
Confidence 4589999999999877655555677899999999999988 544 578899999999999887776554
Q ss_pred cEEEEE
Q 029565 143 DLQMLV 148 (191)
Q Consensus 143 ~~~~l~ 148 (191)
++..+-
T Consensus 398 ~~~~yr 403 (411)
T KOG2757|consen 398 PFLGYR 403 (411)
T ss_pred ceeeee
Confidence 444443
No 64
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=95.93 E-value=0.2 Score=45.33 Aligned_cols=74 Identities=11% Similarity=0.061 Sum_probs=46.3
Q ss_pred eeEEEEEEEECCCCcCCceecC-CcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCc
Q 029565 65 KEIEVWLQTFSPGTRTPIHRHS-CEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENED 143 (191)
Q Consensus 65 ~~~~~~~~~i~PG~~~~~H~H~-~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~ 143 (191)
.++.+.............-... ++|++++.+|++.++.+=.. ..+++||.++||.|+.+++.-. . +
T Consensus 123 ~g~ai~~y~~~~sM~~~~f~NaDGD~Li~~q~G~l~l~Te~G~----------L~v~pGd~~VIPRG~~~rv~l~-~--p 189 (424)
T PF04209_consen 123 NGVAIHVYAANASMDDRAFRNADGDELIFPQQGSLRLETEFGR----------LDVRPGDYVVIPRGTRFRVELP-G--P 189 (424)
T ss_dssp EEEEEEEEEE-S---SEEEEESSEEEEEEEEES-EEEEETTEE----------EEE-TTEEEEE-TT--EEEE-S-S--S
T ss_pred CCcEEEEEEcCCCCCCcceEcCCCCEEEEEEECCEEEEecCee----------EEEcCCeEEEECCeeEEEEEeC-C--C
Confidence 3555554443332222333344 89999999999999988654 4788999999999999998776 2 6
Q ss_pred EEEEEEEe
Q 029565 144 LQMLVVIS 151 (191)
Q Consensus 144 ~~~l~v~~ 151 (191)
++.+++-+
T Consensus 190 ~rgyi~E~ 197 (424)
T PF04209_consen 190 ARGYIIEN 197 (424)
T ss_dssp EEEEEEEE
T ss_pred ceEEEEEc
Confidence 78777763
No 65
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=95.68 E-value=0.071 Score=41.89 Aligned_cols=71 Identities=18% Similarity=0.368 Sum_probs=48.4
Q ss_pred EEEEEEEECCCCcCCceecCCc-----EEEEEE-eCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCC
Q 029565 67 IEVWLQTFSPGTRTPIHRHSCE-----EIFIVL-KGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNE 140 (191)
Q Consensus 67 ~~~~~~~i~PG~~~~~H~H~~e-----E~~~Vl-~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~ 140 (191)
..+....+.||+.+.+|..... .+.++. .+...+.++++. +.+++|..+++.....|..+|.++
T Consensus 80 ~~~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v~~~~----------~~w~~G~~~~fD~s~~H~~~N~~~ 149 (163)
T PF05118_consen 80 GRVRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRVGGET----------RHWREGECWVFDDSFEHEVWNNGD 149 (163)
T ss_dssp EEEEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEETTEE----------EB--CTEEEEE-TTS-EEEEESSS
T ss_pred hhEEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEECCeE----------EEeccCcEEEEeCCEEEEEEeCCC
Confidence 4577888999999999987732 234444 366788888886 578899999999999999999998
Q ss_pred CCcEEEEE
Q 029565 141 NEDLQMLV 148 (191)
Q Consensus 141 ~e~~~~l~ 148 (191)
++=.+|.
T Consensus 150 -~~Rv~L~ 156 (163)
T PF05118_consen 150 -EDRVVLI 156 (163)
T ss_dssp -S-EEEEE
T ss_pred -CCEEEEE
Confidence 4433333
No 66
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=95.65 E-value=0.07 Score=42.66 Aligned_cols=81 Identities=17% Similarity=0.119 Sum_probs=51.9
Q ss_pred EEEEEEECCCCcCCceecCC----cEEEEEEeCEEEEE-ECCeeeecCCCCCceeeecCCe--EEEECCCCcEEEEeCCC
Q 029565 68 EVWLQTFSPGTRTPIHRHSC----EEIFIVLKGSGTLY-LASSSHEKHPGKPQEHFFFANS--TFHIPVNDAHQVWNTNE 140 (191)
Q Consensus 68 ~~~~~~i~PG~~~~~H~H~~----eE~~~Vl~G~~~v~-i~~~~~~l~~gk~~d~~l~~GD--~v~ip~g~~H~~~N~g~ 140 (191)
+.....-.+|.-.++|.|.. ..++.|++|++... +|-..-.-.-|+...+.+.+++ .++||+|..|.+.+.++
T Consensus 44 q~n~S~s~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d 123 (176)
T PF00908_consen 44 QDNISVSKKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLED 123 (176)
T ss_dssp EEEEEEEETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSS
T ss_pred ceEEEEccccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccC
Confidence 34444445576678898874 57999999998753 3322211122555557777775 79999999999999987
Q ss_pred CCcEEEEEEE
Q 029565 141 NEDLQMLVVI 150 (191)
Q Consensus 141 ~e~~~~l~v~ 150 (191)
.+.++...
T Consensus 124 --~a~v~Y~~ 131 (176)
T PF00908_consen 124 --DAEVLYKV 131 (176)
T ss_dssp --EEEEEEEE
T ss_pred --ceEEEEec
Confidence 34444433
No 67
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=95.65 E-value=0.097 Score=41.80 Aligned_cols=66 Identities=18% Similarity=0.132 Sum_probs=46.0
Q ss_pred CCCcCCceecC-C-cEEEEEEeCEEEEEE-CCeeeecCCCCCceeeecCC--eEEEECCCCcEEEEeCCCC
Q 029565 76 PGTRTPIHRHS-C-EEIFIVLKGSGTLYL-ASSSHEKHPGKPQEHFFFAN--STFHIPVNDAHQVWNTNEN 141 (191)
Q Consensus 76 PG~~~~~H~H~-~-eE~~~Vl~G~~~v~i-~~~~~~l~~gk~~d~~l~~G--D~v~ip~g~~H~~~N~g~~ 141 (191)
||.--+.|.|. . .+++.|++|++.... |=..-.-.-|+...+.+.+- -.+++|+|..|.+.|.+++
T Consensus 54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~ 124 (173)
T COG1898 54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDD 124 (173)
T ss_pred CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCc
Confidence 77777899999 4 789999999997532 21110111133333566655 7899999999999999984
No 68
>PF12852 Cupin_6: Cupin
Probab=95.64 E-value=0.077 Score=42.01 Aligned_cols=44 Identities=20% Similarity=0.251 Sum_probs=36.0
Q ss_pred cEEEEEEeCEEEEEECC-eeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCC
Q 029565 88 EEIFIVLKGSGTLYLAS-SSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNE 140 (191)
Q Consensus 88 eE~~~Vl~G~~~v~i~~-~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~ 140 (191)
--+.+|++|+..+.+++ +. .+.+.+||++++|.|..|.+....+
T Consensus 36 ~~fh~V~~G~~~l~~~~~~~---------~~~L~~GDivllp~g~~H~l~~~~~ 80 (186)
T PF12852_consen 36 ASFHVVLRGSCWLRVPGGGE---------PIRLEAGDIVLLPRGTAHVLSSDPD 80 (186)
T ss_pred eEEEEEECCeEEEEEcCCCC---------eEEecCCCEEEEcCCCCeEeCCCCC
Confidence 34789999999999877 22 2688999999999999999965444
No 69
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=95.57 E-value=0.12 Score=38.11 Aligned_cols=63 Identities=21% Similarity=0.223 Sum_probs=45.2
Q ss_pred CCcCCceecCC-cEEEEEEeCEEEEEEC-CeeeecCCCCCceeeecCCeEEEECC--CCcEEEEeCCCCCcEEEEEE
Q 029565 77 GTRTPIHRHSC-EEIFIVLKGSGTLYLA-SSSHEKHPGKPQEHFFFANSTFHIPV--NDAHQVWNTNENEDLQMLVV 149 (191)
Q Consensus 77 G~~~~~H~H~~-eE~~~Vl~G~~~v~i~-~~~~~l~~gk~~d~~l~~GD~v~ip~--g~~H~~~N~g~~e~~~~l~v 149 (191)
+...+.|.|.. +-+-||++|++.-.-. |.. ..+.+||+-++.+ |+.|.-.|.+++++++.+-+
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G~~~H~Ds~G~~----------~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~lQl 105 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEGELRHRDSLGNR----------GVLRAGDVQWMTAGSGIVHSERNASDGGPLHGLQL 105 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEESEEEEEETTSEE----------EEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEEEE
T ss_pred CCCCCCcCCCCceEEEEEecCEEEEECCCCCe----------eEeCCCeEEEEeCCCCceEEEecCCCCCeEEEEEE
Confidence 56678999995 5589999999987643 232 3788999877775 57999999887457777654
No 70
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=95.57 E-value=0.06 Score=43.96 Aligned_cols=88 Identities=17% Similarity=0.235 Sum_probs=58.1
Q ss_pred eEEEEEEEECCCCcCCceecCCcEE-EEEEeCEEEEEECCeeeecCCC-----CCce-------eeecCCe-EEEECC--
Q 029565 66 EIEVWLQTFSPGTRTPIHRHSCEEI-FIVLKGSGTLYLASSSHEKHPG-----KPQE-------HFFFANS-TFHIPV-- 129 (191)
Q Consensus 66 ~~~~~~~~i~PG~~~~~H~H~~eE~-~~Vl~G~~~v~i~~~~~~l~~g-----k~~d-------~~l~~GD-~v~ip~-- 129 (191)
.|.+....++||..+|+|-|++..+ .-||.|++.+..=+........ +.+. ..-.+++ ++..|.
T Consensus 43 ~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL~P~~g 122 (200)
T PF07847_consen 43 DFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVLYPTSG 122 (200)
T ss_pred CcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEEccCCC
Confidence 6889999999999999999997665 4599999998643221100000 0000 0122333 455553
Q ss_pred CCcEEEEeCCCCCcEEEEEEEeCCCc
Q 029565 130 NDAHQVWNTNENEDLQMLVVISRPPV 155 (191)
Q Consensus 130 g~~H~~~N~g~~e~~~~l~v~~~p~~ 155 (191)
|-.|.+.|.+. ++.+|-|.++|.-
T Consensus 123 gNiH~f~a~~~--p~AflDIL~PPY~ 146 (200)
T PF07847_consen 123 GNIHEFTALTG--PCAFLDILAPPYD 146 (200)
T ss_pred CeeEEEEeCCC--CeEEEEEccCCCC
Confidence 47999999883 8999999976643
No 71
>COG1741 Pirin-related protein [General function prediction only]
Probab=95.37 E-value=0.067 Score=45.78 Aligned_cols=74 Identities=19% Similarity=0.214 Sum_probs=54.8
Q ss_pred EEECCCCcCCceecCC-cEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCC--CcEEEEeC-CCCCcEEEE
Q 029565 72 QTFSPGTRTPIHRHSC-EEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVN--DAHQVWNT-NENEDLQML 147 (191)
Q Consensus 72 ~~i~PG~~~~~H~H~~-eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g--~~H~~~N~-g~~e~~~~l 147 (191)
..+.||...++|.|.. +-+-||++|+++-+...... ..++|||+-+..+| +.|+=.|. ++++++..+
T Consensus 49 ~~~~pG~~f~pHPHrg~etvTyvl~G~i~HrDS~Gn~---------~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~ 119 (276)
T COG1741 49 DVLAPGRGFPPHPHRGLETVTYVLDGEIEHRDSLGNK---------GVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGL 119 (276)
T ss_pred ccccCCCcCCCCCCCCcEEEEEEEccEEEEeecCCce---------eeecccceeEEcCCCceeecccCCccCCCcccee
Confidence 3488999899999995 55899999999886432211 37889999888854 79999997 343477777
Q ss_pred EEEeCCC
Q 029565 148 VVISRPP 154 (191)
Q Consensus 148 ~v~~~p~ 154 (191)
-+...+|
T Consensus 120 QlWv~lP 126 (276)
T COG1741 120 QLWVNLP 126 (276)
T ss_pred eeecCCc
Confidence 7665443
No 72
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=95.37 E-value=0.14 Score=41.03 Aligned_cols=78 Identities=17% Similarity=0.114 Sum_probs=52.3
Q ss_pred EEEECCCCcCCceec---CCcEEEEEEeCEEEEE-ECCeeeecCCCCCceeeecC--CeEEEECCCCcEEEEeCCCCCcE
Q 029565 71 LQTFSPGTRTPIHRH---SCEEIFIVLKGSGTLY-LASSSHEKHPGKPQEHFFFA--NSTFHIPVNDAHQVWNTNENEDL 144 (191)
Q Consensus 71 ~~~i~PG~~~~~H~H---~~eE~~~Vl~G~~~v~-i~~~~~~l~~gk~~d~~l~~--GD~v~ip~g~~H~~~N~g~~e~~ 144 (191)
...-.+|.-.++|.| .+.+++.|++|++... +|-..-.-.-|+...+.+.+ +..++||+|..|.+.+.++ ++
T Consensus 48 ~S~S~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d--~a 125 (176)
T TIGR01221 48 HSKSYKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSD--EA 125 (176)
T ss_pred EEEecCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCC--Ce
Confidence 333456666688987 3789999999999753 33222112224444566766 5599999999999999987 34
Q ss_pred EEEEEE
Q 029565 145 QMLVVI 150 (191)
Q Consensus 145 ~~l~v~ 150 (191)
.++...
T Consensus 126 ~v~Y~~ 131 (176)
T TIGR01221 126 EFLYKC 131 (176)
T ss_pred EEEEeC
Confidence 444443
No 73
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=94.99 E-value=0.31 Score=35.25 Aligned_cols=72 Identities=15% Similarity=0.156 Sum_probs=45.7
Q ss_pred EEEECCCCcCCceecC-CcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEEEE
Q 029565 71 LQTFSPGTRTPIHRHS-CEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVV 149 (191)
Q Consensus 71 ~~~i~PG~~~~~H~H~-~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~v 149 (191)
.+.++||+......-+ ++-++||++|++ .++++. ..+.+|+.+++..+..=.+.+.++ .++++.+
T Consensus 3 di~l~~g~~~~~~~~~~~~~~iyv~~G~~--~v~~~~----------~~~~~~~~~~l~~g~~i~~~a~~~--~a~~lll 68 (104)
T PF05726_consen 3 DIKLEPGASFTLPLPPGHNAFIYVLEGSV--EVGGEE----------DPLEAGQLVVLEDGDEIELTAGEE--GARFLLL 68 (104)
T ss_dssp EEEE-TT-EEEEEEETT-EEEEEEEESEE--EETTTT----------EEEETTEEEEE-SECEEEEEESSS--SEEEEEE
T ss_pred EEEECCCCEEEeecCCCCEEEEEEEECcE--EECCCc----------ceECCCcEEEECCCceEEEEECCC--CcEEEEE
Confidence 4567787765543233 556899999996 456543 257799999999777777877653 6999998
Q ss_pred EeCCCce
Q 029565 150 ISRPPVK 156 (191)
Q Consensus 150 ~~~p~~~ 156 (191)
...|--+
T Consensus 69 ~GePl~E 75 (104)
T PF05726_consen 69 GGEPLNE 75 (104)
T ss_dssp EE----S
T ss_pred EccCCCC
Confidence 7755543
No 74
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=94.94 E-value=0.12 Score=42.02 Aligned_cols=89 Identities=17% Similarity=0.047 Sum_probs=62.6
Q ss_pred ccCCCCcEEEEEEeeccCCceeEEEEEEEECCCCcCCceecCCcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeE
Q 029565 45 NYGREGLAHITVAGSILHGMKEIEVWLQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANST 124 (191)
Q Consensus 45 ~~~~~G~~~~~~~~~~~~g~~~~~~~~~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~ 124 (191)
++..+|.+...+..+ .++ .-.+.+..+.||.++|.|+|.+-|...|++|...-..| .+.+||.
T Consensus 109 ~W~~~G~rv~~v~l~-~dd--s~~V~llki~~g~s~P~HtH~G~E~t~vl~G~~sde~G--------------~y~vgD~ 171 (216)
T COG3806 109 RWLGPGGRVEPVRLP-TDD--SRRVALLKIEPGRSFPDHTHVGIERTAVLEGAFSDENG--------------EYLVGDF 171 (216)
T ss_pred eeecCCcceeecccC-CCC--CceeEEEEeccCcccccccccceEEEEEEeeccccCCC--------------ccccCce
Confidence 333455554444443 222 45788889999999999999999999999997655443 2347788
Q ss_pred EEECCCCcEEEEeCCCCCcEEEEEEEe
Q 029565 125 FHIPVNDAHQVWNTNENEDLQMLVVIS 151 (191)
Q Consensus 125 v~ip~g~~H~~~N~g~~e~~~~l~v~~ 151 (191)
..-+..+.|+-+-..+ .+|-.++...
T Consensus 172 ~~~d~~v~H~piv~~~-~eClcl~al~ 197 (216)
T COG3806 172 TLADGTVQHSPIVLPP-GECLCLAALD 197 (216)
T ss_pred eecCCccccccccCCC-CCceEEEEcC
Confidence 8888899998666666 3666666554
No 75
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=94.61 E-value=0.35 Score=41.04 Aligned_cols=117 Identities=20% Similarity=0.212 Sum_probs=61.1
Q ss_pred ccCCCeeEecCCCCCCccCCCCcEEEEEEe---eccCCceeEEEEEEEECCCC--cCCceecCC---------cEEEEEE
Q 029565 29 IKGFPLVRNISELPQDNYGREGLAHITVAG---SILHGMKEIEVWLQTFSPGT--RTPIHRHSC---------EEIFIVL 94 (191)
Q Consensus 29 ~~~~~~V~~i~d~~~~~~~~~G~~~~~~~~---~~~~g~~~~~~~~~~i~PG~--~~~~H~H~~---------eE~~~Vl 94 (191)
+.-.+.....+++....++..... +.+.. .......++-+..+.-++|. +.|+|.|.. +|++|--
T Consensus 111 ~~~p~~~i~~~dv~~~~~G~~~~~-R~V~~~i~~~~~~~~~Lv~get~~~~G~WsSyPPH~Hd~~~~~~e~~leEiYyf~ 189 (261)
T PF04962_consen 111 RDYPPRLITPEDVPVEIRGAGNNS-RTVRNIIDPNVPPASRLVVGETITPGGNWSSYPPHKHDRRMEPDETELEEIYYFR 189 (261)
T ss_dssp S----EEE-TTTSEEEEESSGGGT-EEEEEEESTTT---SS-EEEEEEETTT-EES-SEEE-CCEEEESEECTEEEEEEE
T ss_pred CCCCCEEECHHHCCeEEecCCCCc-EEEEEeeCCCCcccceEEEEEEEeCCCccCCcCCccCCCcCCCccccceeEEEEE
Confidence 444555666667766555532222 22222 22222346777777755553 568999998 7877663
Q ss_pred ----eCEEE--EEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEEEEEeCCC
Q 029565 95 ----KGSGT--LYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVVISRPP 154 (191)
Q Consensus 95 ----~G~~~--v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~v~~~p~ 154 (191)
+|-+. +..++...+. -+.++-||++.+|.| .|.+..... -.+.||++...+.
T Consensus 190 ~~p~~Gfg~q~~y~~~~~~d~------~~~V~~~d~V~iP~g-yHp~~aapG-y~~Yylw~maG~~ 247 (261)
T PF04962_consen 190 FNPPQGFGFQRVYTDDPQLDE------HYVVRNGDAVLIPSG-YHPVVAAPG-YDMYYLWVMAGEN 247 (261)
T ss_dssp SSTTS-EEEEEEE-TTSSSEE------EEEEETTEEEEESTT-B-SEEEEEE-SSEEEEEEEESSS
T ss_pred ccCcccEEEEEEECCCCCCcE------EEEEECCCEEEeCCC-CCCcCcCCC-cCcEEEEEEEcCC
Confidence 35454 2333221111 268899999999999 555544333 2678999997666
No 76
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=94.37 E-value=0.32 Score=41.02 Aligned_cols=43 Identities=9% Similarity=0.011 Sum_probs=35.9
Q ss_pred cEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCC
Q 029565 88 EEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNE 140 (191)
Q Consensus 88 eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~ 140 (191)
-.++++++|.+.+..+|.. +.+.|||.++++++.+|.+...++
T Consensus 72 ~~l~~~~~G~~~~~~~g~~----------~~l~~G~~~l~~~~~p~~~~~~~~ 114 (302)
T PRK09685 72 FFTVFQLSGHAIIEQDDRQ----------VQLAAGDITLIDASRPCSIYPQGL 114 (302)
T ss_pred EEEEEEecceEEEEECCeE----------EEEcCCCEEEEECCCCcEeecCCC
Confidence 3466778999999999987 477899999999999999876544
No 77
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=94.18 E-value=0.23 Score=34.81 Aligned_cols=54 Identities=24% Similarity=0.233 Sum_probs=36.5
Q ss_pred EEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEE
Q 029565 89 EIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQML 147 (191)
Q Consensus 89 E~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l 147 (191)
..+.|++|++.+..-+...... .++..+.+|+..+++|..+|++.-.++ ++++.
T Consensus 27 g~l~Vl~G~L~f~~~~~~~~~~---~~~~~~~~~~~~~i~Pq~wH~V~p~s~--D~~f~ 80 (82)
T PF09313_consen 27 GKLRVLEGELKFYGLDEEGEEP---EEEVFIPAGQPPVIEPQQWHRVEPLSD--DLRFQ 80 (82)
T ss_dssp EEEEEEESEEEEEEESSTT-SE---SEEEEEETTEEEEE-TT-EEEEEESST--T-EEE
T ss_pred EEEEEEeeEEEEEEECCCCCce---eEEEEeCCCCCceeCCCceEEEEECCC--CEEEE
Confidence 4688999999997543310000 113578899999999999999999887 46654
No 78
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=94.06 E-value=0.44 Score=37.70 Aligned_cols=128 Identities=22% Similarity=0.197 Sum_probs=76.7
Q ss_pred HHHHHHHhhhccccccCcCcccCCCeeEecCCCC---C--CccCCCCcEEEEEEeeccCCceeEEEEEEEECCCCcCCce
Q 029565 9 LCLSFILLSANIEADASHCSIKGFPLVRNISELP---Q--DNYGREGLAHITVAGSILHGMKEIEVWLQTFSPGTRTPIH 83 (191)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~d~~---~--~~~~~~G~~~~~~~~~~~~g~~~~~~~~~~i~PG~~~~~H 83 (191)
.++..|-...+.+++++.=..+-.++++++..-. . ...+.+..-..++......| .+.+..+++.||..+|.|
T Consensus 12 ~f~~e~~diln~~~dEst~l~ev~~ll~~l~~~~~wl~~~~~~pdp~tgt~~LLh~d~~g--fltV~~~t~~PG~~~p~H 89 (191)
T COG5553 12 LFYREIMDILNAAADESTPLEEVKALLGDLTNRFHWLGGLVHEPDPDTGTELLLHADPQG--FLTVYHITLSPGVQYPPH 89 (191)
T ss_pred HHHHHHHHHHhhccCcCcchHHHHHHHHHHhhhhhhhhhhhcCCCCCccceEEEEEcccc--cEEEEEEEeCCCcccCCc
Confidence 4455666667778887776666666766642111 1 11112222222333322233 489999999999999999
Q ss_pred ecCCcEEEEEEeCEEEEE---ECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCC
Q 029565 84 RHSCEEIFIVLKGSGTLY---LASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNEN 141 (191)
Q Consensus 84 ~H~~eE~~~Vl~G~~~v~---i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~ 141 (191)
-|...-++=|+.|.-.-+ .+++...-+++ +|-...||.+- +.+|..|++.|.+.+
T Consensus 90 nH~~wglVgil~G~E~n~~y~~~~~~~~~P~~--qdk~~apgeV~-lSpgdihsv~n~~sd 147 (191)
T COG5553 90 NHLMWGLVGILWGGETNFIYPLAGEEVDEPER--QDKFAAPGEVH-LSPGDIHSVANTGSD 147 (191)
T ss_pred ccchheeeeeeecccccceecccCCCCCCcch--hhhhcCcceEe-eCCCCeeeecccCCC
Confidence 999777777777765432 23332222222 23345677665 667999999998763
No 79
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=93.99 E-value=0.26 Score=42.81 Aligned_cols=67 Identities=15% Similarity=0.131 Sum_probs=40.6
Q ss_pred ECCCC--cCCceecCCcEEEEEEeCEEEEEECCeee---------ecCC----CCCceeeecCCeEEEECCCCcEEEEeC
Q 029565 74 FSPGT--RTPIHRHSCEEIFIVLKGSGTLYLASSSH---------EKHP----GKPQEHFFFANSTFHIPVNDAHQVWNT 138 (191)
Q Consensus 74 i~PG~--~~~~H~H~~eE~~~Vl~G~~~v~i~~~~~---------~l~~----gk~~d~~l~~GD~v~ip~g~~H~~~N~ 138 (191)
+.|++ ..++|+-..+-+++=++|+=+..+.+... .... ....++.+.|||++|+|+|.+|...+.
T Consensus 120 ~tp~g~~g~~~H~D~~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H~~~~~ 199 (319)
T PF08007_consen 120 LTPPGSQGFGPHYDDHDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWWHQAVTT 199 (319)
T ss_dssp EETSSBEESECEE-SSEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-EEEEEES
T ss_pred ecCCCCCCccCEECCcccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCccCCCCCC
Confidence 55555 56788777777777788988877765110 0000 112368999999999999999999998
Q ss_pred CC
Q 029565 139 NE 140 (191)
Q Consensus 139 g~ 140 (191)
+.
T Consensus 200 ~~ 201 (319)
T PF08007_consen 200 DP 201 (319)
T ss_dssp S-
T ss_pred CC
Confidence 73
No 80
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=93.97 E-value=0.52 Score=42.77 Aligned_cols=68 Identities=10% Similarity=-0.029 Sum_probs=49.2
Q ss_pred ECCCCcC-C-ce-ecCCcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEEEEE
Q 029565 74 FSPGTRT-P-IH-RHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVVI 150 (191)
Q Consensus 74 i~PG~~~-~-~H-~H~~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~v~ 150 (191)
..++... . .- ...+++++++.+|++.+..+=.. ..+++||.++||.|+.+++.-.+. +++.+++-
T Consensus 138 y~~n~sM~~~~f~NaDGD~Livpq~G~l~i~TEfG~----------L~v~pgei~VIPRG~~frv~l~~g--p~rgyi~E 205 (438)
T PRK05341 138 YAANRSMQDRYFYNADGELLIVPQQGRLRLATELGV----------LDVEPGEIAVIPRGVKFRVELPDG--PARGYVCE 205 (438)
T ss_pred EeCCCCcccceeecCCCCEEEEEEeCCEEEEEeccc----------eEecCCCEEEEcCccEEEEecCCC--CeeEEEEE
Confidence 4555543 2 23 34489999999999999876433 478899999999999999985442 67777665
Q ss_pred eCC
Q 029565 151 SRP 153 (191)
Q Consensus 151 ~~p 153 (191)
+..
T Consensus 206 ~~g 208 (438)
T PRK05341 206 NYG 208 (438)
T ss_pred ecC
Confidence 433
No 81
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=93.96 E-value=0.52 Score=39.99 Aligned_cols=81 Identities=12% Similarity=0.100 Sum_probs=49.8
Q ss_pred eEEEEEEEECCCCcCCceecCCcEEEEEEeCEEEEEECC-eeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcE
Q 029565 66 EIEVWLQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLAS-SSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDL 144 (191)
Q Consensus 66 ~~~~~~~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~~-~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~ 144 (191)
-+.+....|++|.....-....|-.++.|+|+++++++| +.+.+. +..++--...|++|+|.|..-.+.+.+ ++
T Consensus 26 ~~~~~~l~L~~g~~~~~~~~~~E~~vv~l~G~~~v~~~g~~~~~l~--~R~~vF~~~~d~lYvp~g~~~~i~a~~---~a 100 (261)
T PF04962_consen 26 YMGFGVLRLEAGESLEFELERRELGVVNLGGKATVTVDGEEFYELG--GRESVFDGPPDALYVPRGTKVVIFAST---DA 100 (261)
T ss_dssp CBECCCEEEECCHCCCCCCCSEEEEEEEESSSEEEEETTEEEEEE---TTSSGGGS--EEEEE-TT--EEEEESS---TE
T ss_pred ccceEEEEecCCCEEeccCCCcEEEEEEeCCEEEEEeCCceEEEec--ccccccCCCCcEEEeCCCCeEEEEEcC---CC
Confidence 445566778888876655333445677789999999998 554331 111111234499999999998888843 47
Q ss_pred EEEEEEe
Q 029565 145 QMLVVIS 151 (191)
Q Consensus 145 ~~l~v~~ 151 (191)
++.+..+
T Consensus 101 e~~~~sa 107 (261)
T PF04962_consen 101 EFAVCSA 107 (261)
T ss_dssp EEEEEEE
T ss_pred EEEEEcc
Confidence 7776554
No 82
>PLN02288 mannose-6-phosphate isomerase
Probab=93.88 E-value=0.21 Score=44.82 Aligned_cols=61 Identities=23% Similarity=0.342 Sum_probs=44.8
Q ss_pred ceeEEEEEEEECCCCcCCceecCCcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCc
Q 029565 64 MKEIEVWLQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDA 132 (191)
Q Consensus 64 ~~~~~~~~~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~ 132 (191)
..+|.+...++.+|.......+.+-.+++|++|++++..+++.. ++.+.+|+++|+|++..
T Consensus 331 ~~eF~v~~~~l~~~~~~~~~~~~gp~Illv~~G~~~i~~~~~~~--------~~~l~~G~~~fv~a~~~ 391 (394)
T PLN02288 331 FDEFEVDHCDVPPGASVVFPAVPGPSVFLVIEGEGVLSTGSSED--------GTAAKRGDVFFVPAGTE 391 (394)
T ss_pred CcceEEEEEEeCCCCeEeecCCCCCEEEEEEcCEEEEecCCccc--------eEEEeceeEEEEeCCCc
Confidence 35789988999887653333355778999999999997655431 13588999999998754
No 83
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=93.80 E-value=0.9 Score=34.41 Aligned_cols=41 Identities=7% Similarity=0.049 Sum_probs=35.4
Q ss_pred EEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCC
Q 029565 90 IFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNE 140 (191)
Q Consensus 90 ~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~ 140 (191)
+.+.++|.+.+..++.. ..+.|||.++++++.++.+...++
T Consensus 58 l~~~~~G~~~~~~~g~~----------~~~~pg~~~l~d~~~~~~~~~~~~ 98 (172)
T PF14525_consen 58 LVLPLSGSARIEQGGRE----------VELAPGDVVLLDPGQPYRLEFSAG 98 (172)
T ss_pred EEEEccCCEEEEECCEE----------EEEcCCeEEEEcCCCCEEEEECCC
Confidence 56667999999999986 578899999999999999987654
No 84
>PLN02658 homogentisate 1,2-dioxygenase
Probab=93.72 E-value=0.6 Score=42.34 Aligned_cols=70 Identities=7% Similarity=-0.051 Sum_probs=50.3
Q ss_pred EEEECCCCcC-C-ceec-CCcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEE
Q 029565 71 LQTFSPGTRT-P-IHRH-SCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQML 147 (191)
Q Consensus 71 ~~~i~PG~~~-~-~H~H-~~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l 147 (191)
+....++... . .-.+ .+++++++.+|++.+..+=.. ..+++||.++||.|+.+++.-.+. +++.+
T Consensus 128 i~iy~~n~sM~~~~f~NaDGD~Livpq~G~l~i~TEfG~----------L~v~pgei~VIPRG~~frv~l~~g--p~rgy 195 (435)
T PLN02658 128 IHMYVANKSMDDCAFCNADGDFLIVPQQGRLWIKTELGK----------LQVSPGEIVVIPRGFRFAVDLPDG--PSRGY 195 (435)
T ss_pred EEEEeCCCCCccceeecCCCCEEEEEEeCCEEEEEeccc----------eEecCCCEEEecCccEEEEecCCC--CeeEE
Confidence 3344556554 2 2334 489999999999999876433 478899999999999999875443 67777
Q ss_pred EEEeC
Q 029565 148 VVISR 152 (191)
Q Consensus 148 ~v~~~ 152 (191)
++-+.
T Consensus 196 v~E~~ 200 (435)
T PLN02658 196 VLEIF 200 (435)
T ss_pred EEeec
Confidence 66544
No 85
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=93.65 E-value=0.68 Score=33.34 Aligned_cols=64 Identities=19% Similarity=0.248 Sum_probs=44.1
Q ss_pred EECCCCcCCceecC-CcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEEEEE
Q 029565 73 TFSPGTRTPIHRHS-CEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVVI 150 (191)
Q Consensus 73 ~i~PG~~~~~H~H~-~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~v~ 150 (191)
.+.||. .+... ..|.+-|++|+.++.+.|+.-. ....+|+++-+|+|..-.++... +..++|-+
T Consensus 29 Vm~pGe---Y~F~T~~~E~M~vvsG~l~V~lpg~~ew--------~~~~aGesF~VpanssF~v~v~~---~~~Y~C~y 93 (94)
T PF06865_consen 29 VMLPGE---YTFGTSAPERMEVVSGELEVKLPGEDEW--------QTYSAGESFEVPANSSFDVKVKE---PTAYLCSY 93 (94)
T ss_dssp EE-SEC---EEEEESS-EEEEEEESEEEEEETT-SS---------EEEETT-EEEE-TTEEEEEEESS----EEEEEEE
T ss_pred EEeeeE---EEEcCCCCEEEEEEEeEEEEEcCCCccc--------EEeCCCCeEEECCCCeEEEEECc---ceeeEEEe
Confidence 356665 33333 5789999999999999987411 36789999999999999998863 57788754
No 86
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=93.44 E-value=0.23 Score=33.01 Aligned_cols=55 Identities=11% Similarity=0.165 Sum_probs=40.8
Q ss_pred EECCCCcCCceecCCcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEE
Q 029565 73 TFSPGTRTPIHRHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVW 136 (191)
Q Consensus 73 ~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~ 136 (191)
++.||.....+.....+ +.|.+|++=++.++.. .|+.|.+||++.+++|..-.+.
T Consensus 3 ~L~~g~~~~lr~~~~~~-l~v~~G~vWlT~~g~~--------~D~~L~~G~~l~l~~g~~vvl~ 57 (63)
T PF11142_consen 3 ELAPGETLSLRAAAGQR-LRVESGRVWLTREGDP--------DDYWLQAGDSLRLRRGGRVVLS 57 (63)
T ss_pred EeCCCceEEeEcCCCcE-EEEccccEEEECCCCC--------CCEEECCCCEEEeCCCCEEEEE
Confidence 46677766666555444 8999999999887643 3789999999999988654443
No 87
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=93.24 E-value=0.92 Score=38.83 Aligned_cols=69 Identities=10% Similarity=0.171 Sum_probs=46.1
Q ss_pred ECCCCcCCceecC-CcEE-EEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEe-CCCCCcEEEEEEE
Q 029565 74 FSPGTRTPIHRHS-CEEI-FIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWN-TNENEDLQMLVVI 150 (191)
Q Consensus 74 i~PG~~~~~H~H~-~eE~-~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N-~g~~e~~~~l~v~ 150 (191)
|+.+......... ..|+ ++.|.|+++++++|+.+ .+.+.|++|+|.|..-.... .....++++.+..
T Consensus 59 l~~~~~~~~~~fl~rrE~giV~lgG~~~V~vdG~~~----------~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~s 128 (276)
T PRK00924 59 LEAGKQLGVSYFLERRELGIINIGGAGTVTVDGETY----------ELGHRDALYVGKGAKEVVFASADAANPAKFYLNS 128 (276)
T ss_pred cccCccccceeecCCcEEEEEEccceEEEEECCEEE----------ecCCCcEEEECCCCcEEEEEecCCCCCcEEEEEc
Confidence 4444444444344 5665 56679999999999874 56688999999998754442 2211378888765
Q ss_pred eC
Q 029565 151 SR 152 (191)
Q Consensus 151 ~~ 152 (191)
++
T Consensus 129 AP 130 (276)
T PRK00924 129 AP 130 (276)
T ss_pred cc
Confidence 43
No 88
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=93.13 E-value=0.12 Score=37.16 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=19.1
Q ss_pred eeecCCeEEEECCCCcEEEEeCCC
Q 029565 117 HFFFANSTFHIPVNDAHQVWNTNE 140 (191)
Q Consensus 117 ~~l~~GD~v~ip~g~~H~~~N~g~ 140 (191)
+.-+|||.|++|+|..|+..|.|.
T Consensus 83 ~~Q~~Ge~V~i~pg~~H~v~n~g~ 106 (114)
T PF02373_consen 83 FVQKPGEFVFIPPGAYHQVFNLGD 106 (114)
T ss_dssp EEEETT-EEEE-TT-EEEEEESSS
T ss_pred ceECCCCEEEECCCceEEEEeCCc
Confidence 566799999999999999999987
No 89
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=93.09 E-value=0.16 Score=41.27 Aligned_cols=65 Identities=25% Similarity=0.334 Sum_probs=41.5
Q ss_pred CCCCcCCceecCCcEEEEEEeCEEEEEECC--eeeecC----------------------------CCCCceeeecCCeE
Q 029565 75 SPGTRTPIHRHSCEEIFIVLKGSGTLYLAS--SSHEKH----------------------------PGKPQEHFFFANST 124 (191)
Q Consensus 75 ~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~~--~~~~l~----------------------------~gk~~d~~l~~GD~ 124 (191)
.+|..++.|....+-++.++.|+=++.+=. ....+. ..+..++.+.|||+
T Consensus 139 ~~gs~t~lH~D~~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~~l~pGD~ 218 (251)
T PF13621_consen 139 PPGSFTPLHYDPSHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYEVVLEPGDV 218 (251)
T ss_dssp -TTEEEEEEE-SSEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEEEEEETT-E
T ss_pred CCCceeeeeECchhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeEEEECCCeE
Confidence 446677889888778888899987764321 100000 01345688999999
Q ss_pred EEECCCCcEEEEeCC
Q 029565 125 FHIPVNDAHQVWNTN 139 (191)
Q Consensus 125 v~ip~g~~H~~~N~g 139 (191)
+|||+|=+|+++|.+
T Consensus 219 LfiP~gWwH~V~~~~ 233 (251)
T PF13621_consen 219 LFIPPGWWHQVENLS 233 (251)
T ss_dssp EEE-TT-EEEEEEST
T ss_pred EEECCCCeEEEEEcC
Confidence 999999999999993
No 90
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=92.99 E-value=1 Score=38.69 Aligned_cols=59 Identities=19% Similarity=0.219 Sum_probs=43.1
Q ss_pred eeEEEEEEEECCCCcCCceecCCcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEE
Q 029565 65 KEIEVWLQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQV 135 (191)
Q Consensus 65 ~~~~~~~~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~ 135 (191)
..|.+.+.++.... ....+..-.+++|++|++++..++.. +.+.+|+++++|++.....
T Consensus 233 ~~F~~~~~~~~~~~--~~~~~~~~~il~v~~G~~~i~~~~~~----------~~l~~G~~~~ipa~~~~~~ 291 (302)
T TIGR00218 233 EYFSVYKWDISGKA--EFIQQQSALILSVLEGSGRIKSGGKT----------LPLKKGESFFIPAHLGPFT 291 (302)
T ss_pred CCeEEEEEEeCCce--eeccCCCcEEEEEEcceEEEEECCEE----------EEEecccEEEEccCCccEE
Confidence 46888887775432 11223366789999999999887765 4788999999999985433
No 91
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=92.81 E-value=0.95 Score=40.57 Aligned_cols=60 Identities=13% Similarity=0.231 Sum_probs=42.9
Q ss_pred eeEEEEEEEECCCCcCCceecCCcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEE
Q 029565 65 KEIEVWLQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVW 136 (191)
Q Consensus 65 ~~~~~~~~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~ 136 (191)
..|.+....+..+. .... ...-.+++|++|++++..+++. +.+.+|+++++|++......
T Consensus 319 ~~F~~~~~~l~~~~-~~~~-~~~~~Illv~~G~~~i~~~~~~----------~~l~~G~~~fipa~~~~~~~ 378 (389)
T PRK15131 319 DDFAFSLHDLSDQP-TTLS-QQSAAILFCVEGEAVLWKGEQQ----------LTLKPGESAFIAANESPVTV 378 (389)
T ss_pred CCcEEEEEEECCce-EEec-CCCcEEEEEEcceEEEEeCCeE----------EEECCCCEEEEeCCCccEEE
Confidence 36777777776542 1111 1356899999999999877765 47889999999998765443
No 92
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=92.39 E-value=1.3 Score=37.89 Aligned_cols=111 Identities=14% Similarity=0.203 Sum_probs=65.0
Q ss_pred CeeEecCCCCCCccCC-CCcEEEEEEe---eccCCceeEEEEEEEECCCC---cCCceecC-CcEE-EEE-E-eCEEEEE
Q 029565 33 PLVRNISELPQDNYGR-EGLAHITVAG---SILHGMKEIEVWLQTFSPGT---RTPIHRHS-CEEI-FIV-L-KGSGTLY 101 (191)
Q Consensus 33 ~~V~~i~d~~~~~~~~-~G~~~~~~~~---~~~~g~~~~~~~~~~i~PG~---~~~~H~H~-~eE~-~~V-l-~G~~~v~ 101 (191)
+.....+++....++. .+...+.+.. +......++.+....+.||+ +.|+|.|. ..|. +|. + ++.-.++
T Consensus 137 trlI~~~d~~~~~rG~~~~sN~R~I~~il~p~~~~s~qLlmG~tvltPGg~WSSyPPHkHDrr~E~YlYf~l~~~qrV~h 216 (276)
T PRK00924 137 TKKITIADASPVTLGDLETSNRRTINKYIHPDVLETCQLVMGLTELEPGSVWNTMPCHTHDRRMEVYFYFDMPEDARVFH 216 (276)
T ss_pred CEEECHHHCCeEeccCCCCCCcEEEEEecCCCCCccccEEEEEEEEcCCCCCCCCCCccCCCCcceEEEEEcCCCceEEe
Confidence 3444555666555542 1222232222 21222347788888889987 56899999 5563 332 2 3333444
Q ss_pred ECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEEEEEe
Q 029565 102 LASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVVIS 151 (191)
Q Consensus 102 i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~v~~ 151 (191)
..|+-.+ .+-..++-+|+|..|++-.|.-.-+++ -.|+|-..
T Consensus 217 ~mG~pdE-----Trh~~v~n~~aVisP~wsih~g~gt~~---y~fiw~m~ 258 (276)
T PRK00924 217 FMGEPQE-----TRHIVVHNEQAVISPSWSIHSGVGTSN---YTFIWGMA 258 (276)
T ss_pred cCCCccc-----eeeEEEECCCEEECCCcceecCcCccc---cEEEEEec
Confidence 4443211 011578899999999999999876655 47888764
No 93
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=91.97 E-value=1.4 Score=39.88 Aligned_cols=66 Identities=8% Similarity=-0.026 Sum_probs=48.1
Q ss_pred EECCCCcC-C-c-eecCCcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEEEE
Q 029565 73 TFSPGTRT-P-I-HRHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVV 149 (191)
Q Consensus 73 ~i~PG~~~-~-~-H~H~~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~v 149 (191)
...++... . . -...+++++++.+|++.+..+=.. ..+++||.++||.|+.+++.-.+ +++.+++
T Consensus 131 iy~~~~sM~~~~f~NaDGD~Livpq~G~l~i~TEfG~----------L~v~pgei~VIPRG~~frv~l~g---p~rgyi~ 197 (429)
T TIGR01015 131 IYLCNASMENRAFYNADGDFLIVPQQGALLITTEFGR----------LLVEPNEICVIPRGVRFRVTVLE---PARGYIC 197 (429)
T ss_pred EEeCCCCcccceeeccCCCEEEEEEeCcEEEEEeccc----------eEecCCCEEEecCccEEEEeeCC---CceEEEE
Confidence 34555544 2 2 334489999999999999876332 47889999999999999998653 5666665
Q ss_pred Ee
Q 029565 150 IS 151 (191)
Q Consensus 150 ~~ 151 (191)
-+
T Consensus 198 E~ 199 (429)
T TIGR01015 198 EV 199 (429)
T ss_pred ec
Confidence 43
No 94
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=91.88 E-value=4 Score=34.30 Aligned_cols=81 Identities=14% Similarity=0.134 Sum_probs=56.3
Q ss_pred ccCCceeEEEEEEEECCCCcCCceecCCcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCC
Q 029565 60 ILHGMKEIEVWLQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTN 139 (191)
Q Consensus 60 ~~~g~~~~~~~~~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g 139 (191)
...|-.-..+....|.+|.....-.-..|-.+++++|++++..+++.+.......--|.=.|-|++|+|.|..-++...+
T Consensus 22 ~sagw~YVGF~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYvp~g~~~~vtA~t 101 (270)
T COG3718 22 ESAGWEYVGFRLLRLAAGESATEETGDRERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYVPAGSAFSVTATT 101 (270)
T ss_pred CCCCceeEEEEEEEccCCCcccccCCCceEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEecCCceEEEEeec
Confidence 34455566788888999998877666667778889999999988876433211000111124599999999998888876
Q ss_pred C
Q 029565 140 E 140 (191)
Q Consensus 140 ~ 140 (191)
+
T Consensus 102 ~ 102 (270)
T COG3718 102 D 102 (270)
T ss_pred c
Confidence 5
No 95
>PRK10579 hypothetical protein; Provisional
Probab=91.77 E-value=1.3 Score=31.93 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=42.8
Q ss_pred CcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEEEEE
Q 029565 87 CEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVVI 150 (191)
Q Consensus 87 ~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~v~ 150 (191)
..|.+-|++|+.++.+.|+.-. ..+.+|+++-+|+|..-.++... +..++|-+
T Consensus 41 ~~E~MeivsG~l~V~Lpg~~ew--------~~~~aG~sF~VpanssF~l~v~~---~t~Y~C~y 93 (94)
T PRK10579 41 EPEEMTVISGALNVLLPGATDW--------QVYEAGEVFNVPGHSEFHLQVAE---PTSYLCRY 93 (94)
T ss_pred CcEEEEEEeeEEEEECCCCccc--------EEeCCCCEEEECCCCeEEEEECc---ceeeEEEc
Confidence 5789999999999999886421 36789999999999998888753 46777753
No 96
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=90.67 E-value=0.66 Score=41.18 Aligned_cols=84 Identities=13% Similarity=0.114 Sum_probs=53.6
Q ss_pred EEEEEECCCCcCCceecCCcEEEEEEeCEEEEEECCeeeecCCCC------------CceeeecCCeEEEECCCCcEEEE
Q 029565 69 VWLQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLASSSHEKHPGK------------PQEHFFFANSTFHIPVNDAHQVW 136 (191)
Q Consensus 69 ~~~~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~~~~~~l~~gk------------~~d~~l~~GD~v~ip~g~~H~~~ 136 (191)
+.....++|++..+|.-..+-+++=..|+=+-+++....-...-+ ..|..+.|||++|+|++.+|.-.
T Consensus 121 iMIS~a~~GGgvg~H~D~YDVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp~~~H~gv 200 (383)
T COG2850 121 IMISFAAPGGGVGPHFDQYDVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYGV 200 (383)
T ss_pred eEEEEecCCCccCccccchheeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCCCCCcCCc
Confidence 344467889999999888776665556666666665421111010 12357889999999999999988
Q ss_pred eCCCCCcEEEEEEEeCCCc
Q 029565 137 NTNENEDLQMLVVISRPPV 155 (191)
Q Consensus 137 N~g~~e~~~~l~v~~~p~~ 155 (191)
...+ -+.+ .|..++|.
T Consensus 201 ae~d--c~ty-SvG~r~Pn 216 (383)
T COG2850 201 AEDD--CMTY-SVGFRAPN 216 (383)
T ss_pred cccc--ccce-eeeccCCc
Confidence 7643 3444 44444443
No 97
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=89.99 E-value=1.9 Score=30.67 Aligned_cols=80 Identities=14% Similarity=0.082 Sum_probs=36.1
Q ss_pred EEEEEECCCCcCCceecCC---cEEEEEE----eCEEEEEECCeeeecC-----------CCCCceeeecCCeEEEECCC
Q 029565 69 VWLQTFSPGTRTPIHRHSC---EEIFIVL----KGSGTLYLASSSHEKH-----------PGKPQEHFFFANSTFHIPVN 130 (191)
Q Consensus 69 ~~~~~i~PG~~~~~H~H~~---eE~~~Vl----~G~~~v~i~~~~~~l~-----------~gk~~d~~l~~GD~v~ip~g 130 (191)
.+.....+|+....|.|+. .=++||- .|.+.+.-........ ......+..++||.+++|+.
T Consensus 2 ~W~ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~ 81 (101)
T PF13759_consen 2 SWANIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSW 81 (101)
T ss_dssp EEEEEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETT
T ss_pred eeEEEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCC
Confidence 3556677888889999985 3356664 3334443322110000 00111245679999999999
Q ss_pred CcEEEEeCCCCCcEEEEEE
Q 029565 131 DAHQVWNTNENEDLQMLVV 149 (191)
Q Consensus 131 ~~H~~~N~g~~e~~~~l~v 149 (191)
..|.+.-... +.-|+.+.
T Consensus 82 l~H~v~p~~~-~~~Risis 99 (101)
T PF13759_consen 82 LWHGVPPNNS-DEERISIS 99 (101)
T ss_dssp SEEEE----S-SS-EEEEE
T ss_pred CEEeccCcCC-CCCEEEEE
Confidence 9999854333 13455443
No 98
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=89.94 E-value=2.9 Score=36.50 Aligned_cols=60 Identities=20% Similarity=0.309 Sum_probs=43.8
Q ss_pred eEEEEEEEECCCCcCCceecCCcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCC-CcEEEEe
Q 029565 66 EIEVWLQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVN-DAHQVWN 137 (191)
Q Consensus 66 ~~~~~~~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g-~~H~~~N 137 (191)
.|.+.++.+.. ....-.+..-.+++|++|++.+..+++. +.+.+|+++++|++ .+-.+..
T Consensus 241 ~F~l~~~~i~~--~~~~~~~~~~~il~v~eG~~~l~~~~~~----------~~l~~G~s~~ipa~~~~~~i~g 301 (312)
T COG1482 241 DFALYKWDISG--TAEFIKQESFSILLVLEGEGTLIGGGQT----------LKLKKGESFFIPANDGPYTIEG 301 (312)
T ss_pred ceEEEEEeccC--hhhhccCCCcEEEEEEcCeEEEecCCEE----------EEEcCCcEEEEEcCCCcEEEEe
Confidence 67777776664 1112223377899999999999999887 57889999999999 4545543
No 99
>PHA00672 hypothetical protein
Probab=88.94 E-value=3.1 Score=31.69 Aligned_cols=70 Identities=10% Similarity=0.159 Sum_probs=51.0
Q ss_pred eEEEEEEEECCCCcCCceecCCcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEE
Q 029565 66 EIEVWLQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQ 145 (191)
Q Consensus 66 ~~~~~~~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~ 145 (191)
++..+..+||.|....--.|..+.+ ++++|.+.+.+|++.. .+..--++--|+|....++...|+ ...
T Consensus 46 GvYARei~IPkGt~LtG~~hkf~~~-ii~sG~itV~tdge~~----------rl~g~~~i~~~aG~KragyAHeDT-~wt 113 (152)
T PHA00672 46 GVYARTIRIPAGVALTGALIKVSTV-LIFSGHATVFIGGEAV----------ELRGYHVIPASAGRKQAFVAHADT-DLT 113 (152)
T ss_pred ceeEEEEeccCceeeeeeeeEeeEE-EEecccEEEEeCCcEE----------EEecceeeecCCCcccceeeeccc-eEE
Confidence 4566778899888766566666666 9999999999998874 344445666789998888887663 444
Q ss_pred EE
Q 029565 146 ML 147 (191)
Q Consensus 146 ~l 147 (191)
.+
T Consensus 114 ~~ 115 (152)
T PHA00672 114 ML 115 (152)
T ss_pred EE
Confidence 33
No 100
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=88.25 E-value=3.2 Score=33.86 Aligned_cols=82 Identities=12% Similarity=0.053 Sum_probs=47.6
Q ss_pred EEEEEEECCCCcCCceecCCc---EEEEEE----eCEEEEEECCeeeec--C--------CC-CCceeeecCCeEEEECC
Q 029565 68 EVWLQTFSPGTRTPIHRHSCE---EIFIVL----KGSGTLYLASSSHEK--H--------PG-KPQEHFFFANSTFHIPV 129 (191)
Q Consensus 68 ~~~~~~i~PG~~~~~H~H~~e---E~~~Vl----~G~~~v~i~~~~~~l--~--------~g-k~~d~~l~~GD~v~ip~ 129 (191)
..+....++|+....|.|+.. =++||. .|.+++......... . .. ....+.-++|+.+++|+
T Consensus 97 ~~W~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS 176 (201)
T TIGR02466 97 KAWVNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFES 176 (201)
T ss_pred eEeEEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECC
Confidence 567788899999999999953 467776 334443311100000 0 00 00012337899999999
Q ss_pred CCcEEEEeCCCCCcEEEEEEE
Q 029565 130 NDAHQVWNTNENEDLQMLVVI 150 (191)
Q Consensus 130 g~~H~~~N~g~~e~~~~l~v~ 150 (191)
...|.+.-... +.-|+-+.+
T Consensus 177 ~L~H~v~p~~~-~~~RISiSF 196 (201)
T TIGR02466 177 WLRHEVPPNES-EEERISVSF 196 (201)
T ss_pred CCceecCCCCC-CCCEEEEEE
Confidence 99998854333 234655544
No 101
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=86.51 E-value=1.9 Score=36.63 Aligned_cols=60 Identities=25% Similarity=0.273 Sum_probs=41.2
Q ss_pred CCCcCCceecC--CcEEEEEEeCEEEEEE-CCeeeecCCCCCceeeecC-CeEEEECCCCcEEEEeCCC
Q 029565 76 PGTRTPIHRHS--CEEIFIVLKGSGTLYL-ASSSHEKHPGKPQEHFFFA-NSTFHIPVNDAHQVWNTNE 140 (191)
Q Consensus 76 PG~~~~~H~H~--~eE~~~Vl~G~~~v~i-~~~~~~l~~gk~~d~~l~~-GD~v~ip~g~~H~~~N~g~ 140 (191)
|+.-...|.|. ..+.+.|++|++.+.. +++...+. ...+.+ ++.-+++++.+|++...++
T Consensus 20 p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~-----~~~l~~~~~~~~i~p~~wh~v~~~s~ 83 (287)
T PRK12335 20 PEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELS-----EHIFDAENQPPFIEPQAWHRIEAASD 83 (287)
T ss_pred hHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeee-----EEEEecCCCCceeCCcceEEEEEcCC
Confidence 56666788885 5789999999999965 33221110 123444 3455699999999998865
No 102
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=85.87 E-value=9.9 Score=33.86 Aligned_cols=53 Identities=11% Similarity=-0.033 Sum_probs=41.8
Q ss_pred CcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEEEEEe
Q 029565 87 CEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVVIS 151 (191)
Q Consensus 87 ~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~v~~ 151 (191)
+++++++..|++.+..+=.. ..+.|||..+||.|+.-++.-... .++.+..-+
T Consensus 146 ge~Livpq~G~l~l~te~G~----------l~v~pgeiavIPRG~~frve~~~~--~~rgy~~En 198 (427)
T COG3508 146 GELLIVPQQGELRLKTELGV----------LEVEPGEIAVIPRGTTFRVELKDG--EARGYGCEN 198 (427)
T ss_pred CCEEEEeecceEEEEEeece----------EEecCCcEEEeeCCceEEEEecCC--ceEEEEEee
Confidence 78999999999999766433 478899999999999999988765 355555443
No 103
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=85.57 E-value=6 Score=32.19 Aligned_cols=76 Identities=11% Similarity=0.150 Sum_probs=44.4
Q ss_pred eEEEEEEEECCCCcCCceecCCcEEEEEEeCEEEEEE---CCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCC
Q 029565 66 EIEVWLQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYL---ASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENE 142 (191)
Q Consensus 66 ~~~~~~~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i---~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e 142 (191)
........+++|...-..-.+...+++|++|.+.+.. +|+...+ ..+.+||.+-...+.++.+....- +
T Consensus 35 ~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~-------~~~~~Gd~fG~~~~~~~~~~~~A~-~ 106 (230)
T PRK09391 35 GLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIG-------AFHLPGDVFGLESGSTHRFTAEAI-V 106 (230)
T ss_pred cceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEE-------EEecCCceecccCCCcCCeEEEEc-C
Confidence 3345566777777654444446679999999999864 3333222 245788877665554444333333 2
Q ss_pred cEEEEEE
Q 029565 143 DLQMLVV 149 (191)
Q Consensus 143 ~~~~l~v 149 (191)
++.++.+
T Consensus 107 ds~v~~i 113 (230)
T PRK09391 107 DTTVRLI 113 (230)
T ss_pred ceEEEEE
Confidence 4444443
No 104
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=83.27 E-value=0.95 Score=32.59 Aligned_cols=10 Identities=30% Similarity=0.394 Sum_probs=6.0
Q ss_pred CCceehhHHH
Q 029565 1 MARSWLIFLC 10 (191)
Q Consensus 1 ~~~~~~~~~~ 10 (191)
||.|.+++|.
T Consensus 1 MaSK~~llL~ 10 (95)
T PF07172_consen 1 MASKAFLLLG 10 (95)
T ss_pred CchhHHHHHH
Confidence 7766655543
No 105
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=83.10 E-value=9 Score=30.17 Aligned_cols=49 Identities=8% Similarity=0.200 Sum_probs=30.0
Q ss_pred EEEECCCCcCCceecCCcEEEEEEeCEEEEEE---CCeeeecCCCCCceeeecCCeEEE
Q 029565 71 LQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYL---ASSSHEKHPGKPQEHFFFANSTFH 126 (191)
Q Consensus 71 ~~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i---~~~~~~l~~gk~~d~~l~~GD~v~ 126 (191)
..++++|...-..-.+...+++|++|.+.+.. +|+...+ ..+.+||.+-
T Consensus 22 ~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~-------~~~~~g~~~g 73 (211)
T PRK11753 22 IHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMIL-------SYLNQGDFIG 73 (211)
T ss_pred EEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEE-------EEcCCCCEEe
Confidence 44566666543333335679999999999864 2333333 2567888763
No 106
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=78.63 E-value=1.6 Score=37.96 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=19.2
Q ss_pred eeecCCeEEEECCCCcEEEEe
Q 029565 117 HFFFANSTFHIPVNDAHQVWN 137 (191)
Q Consensus 117 ~~l~~GD~v~ip~g~~H~~~N 137 (191)
+.++|||++|+|+|.+|.+..
T Consensus 160 v~lkpGe~~fl~Agt~HA~~~ 180 (312)
T COG1482 160 VKLKPGEAFFLPAGTPHAYLK 180 (312)
T ss_pred EecCCCCEEEecCCCceeecc
Confidence 689999999999999999854
No 107
>KOG4064 consensus Cysteine dioxygenase CDO1 [Amino acid transport and metabolism]
Probab=78.37 E-value=4 Score=32.09 Aligned_cols=94 Identities=20% Similarity=0.204 Sum_probs=66.1
Q ss_pred cCCceeEEEEEEEECCCCcCCceecC-CcEEEEEEeCEEEEE---E-CCeeeecCCCCCceeeecCCeEEEECCCC-cEE
Q 029565 61 LHGMKEIEVWLQTFSPGTRTPIHRHS-CEEIFIVLKGSGTLY---L-ASSSHEKHPGKPQEHFFFANSTFHIPVND-AHQ 134 (191)
Q Consensus 61 ~~g~~~~~~~~~~i~PG~~~~~H~H~-~eE~~~Vl~G~~~v~---i-~~~~~~l~~gk~~d~~l~~GD~v~ip~g~-~H~ 134 (191)
+.|...|.+.+....+|...+.|-|. ..=++-+|+|.++-+ . +.+++++.+- .+-.++.+++.++.... -|+
T Consensus 66 D~GNGKfNLmILCWGeGhgSSvHDHtdsHCF~KmL~G~L~Et~yawPd~ks~e~v~i--sE~~~~~N~vaYiND~lGLHR 143 (196)
T KOG4064|consen 66 DVGNGKFNLMILCWGEGHGSSVHDHTDSHCFVKMLDGELTETKYAWPDRKSHEPVDI--SEKTYGMNGVAYINDELGLHR 143 (196)
T ss_pred hcCCCeEeEEEEEecCCCCccccccccchhHHHHhcCcchhhcccCCCcccCccccc--cceeeeccceEEeccccccee
Confidence 34455788888899999999999998 444777899988632 2 2333333211 12367788999998776 799
Q ss_pred EEeCCCCCcEEEEEEEeCCCcee
Q 029565 135 VWNTNENEDLQMLVVISRPPVKV 157 (191)
Q Consensus 135 ~~N~g~~e~~~~l~v~~~p~~~~ 157 (191)
+.|.+.+++++-|-++. ||.+.
T Consensus 144 vEN~SHs~~aVSLHLY~-PPfdT 165 (196)
T KOG4064|consen 144 VENLSHSNGAVSLHLYI-PPFDT 165 (196)
T ss_pred ccccccCCCceEEEEec-CCcch
Confidence 99998777788887775 55554
No 108
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=77.98 E-value=4.7 Score=28.46 Aligned_cols=28 Identities=36% Similarity=0.284 Sum_probs=19.6
Q ss_pred CCceehhHHHHHHHHhhhccccccCcCccc
Q 029565 1 MARSWLIFLCLSFILLSANIEADASHCSIK 30 (191)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (191)
|||..+|..||..-|+-|. |+|+|-+++
T Consensus 1 MaRRlwiLslLAVtLtVAL--AAPsQKsKR 28 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVAL--AAPSQKSKR 28 (100)
T ss_pred CchhhHHHHHHHHHHHHHh--hcccccccc
Confidence 8999888888877777776 344454444
No 109
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=77.70 E-value=27 Score=26.73 Aligned_cols=81 Identities=17% Similarity=0.216 Sum_probs=47.6
Q ss_pred EEEEEEECCCCcCCceecCCcEEEEEEeC-EEEEE-ECCeeeecCCCCCceeeec----CC--eEEEECCCCcEEEEeCC
Q 029565 68 EVWLQTFSPGTRTPIHRHSCEEIFIVLKG-SGTLY-LASSSHEKHPGKPQEHFFF----AN--STFHIPVNDAHQVWNTN 139 (191)
Q Consensus 68 ~~~~~~i~PG~~~~~H~H~~eE~~~Vl~G-~~~v~-i~~~~~~l~~gk~~d~~l~----~G--D~v~ip~g~~H~~~N~g 139 (191)
.....-+.++.....|+=..+|+++-..| .+++. ++.+ |+...+.+. +| -.++||+|.+..-+..+
T Consensus 42 T~Iy~LL~~~~~S~~Hrv~sdEiw~~~~G~pl~l~~i~~d------g~~~~~~LG~d~~~g~~~q~vVp~G~W~aa~l~~ 115 (139)
T PF06172_consen 42 TSIYYLLTPGEFSAWHRVDSDEIWHFHAGDPLELHLIDPD------GSYETVVLGPDLAAGERPQVVVPAGTWQAAELEP 115 (139)
T ss_dssp EEEEEEEETTBEEEEEEESSEEEEEEEEES-EEEEEECTT------STEEEEEESSTTCTTEBSEEEE-TTSEEEEEECE
T ss_pred eEEEEEEcCCCCCccEEcCCCEEEEEEcCCCEEEEEEcCC------CCeEEEEECCCCCCCceEEEEECCCEEEEccccC
Confidence 34445577766667777778999999888 55554 3211 111122332 23 35889999999887655
Q ss_pred CCCcEEEEEEEeCCCc
Q 029565 140 ENEDLQMLVVISRPPV 155 (191)
Q Consensus 140 ~~e~~~~l~v~~~p~~ 155 (191)
. ..-.++...-.|.+
T Consensus 116 ~-~~y~Lvsc~VaPGF 130 (139)
T PF06172_consen 116 E-GDYSLVSCTVAPGF 130 (139)
T ss_dssp S-SSEEEEEEEESSC-
T ss_pred C-CCEEEEEEEEcCCC
Confidence 5 35666665555665
No 110
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=76.82 E-value=2.1 Score=38.35 Aligned_cols=21 Identities=5% Similarity=0.028 Sum_probs=18.9
Q ss_pred eeecCCeEEEECCCCcEEEEe
Q 029565 117 HFFFANSTFHIPVNDAHQVWN 137 (191)
Q Consensus 117 ~~l~~GD~v~ip~g~~H~~~N 137 (191)
+.++|||++|+|+|.+|.+..
T Consensus 239 v~l~pGeaifipAg~~HAyl~ 259 (389)
T PRK15131 239 VKLNPGEAMFLFAETPHAYLQ 259 (389)
T ss_pred EEeCCCCEEEeCCCCCeEEcC
Confidence 689999999999999999853
No 111
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=75.01 E-value=1.7 Score=37.38 Aligned_cols=32 Identities=16% Similarity=0.210 Sum_probs=23.1
Q ss_pred eeecCCeEEEECCCCcEEEEeCCCCCcEEEEEEEeCCC
Q 029565 117 HFFFANSTFHIPVNDAHQVWNTNENEDLQMLVVISRPP 154 (191)
Q Consensus 117 ~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~v~~~p~ 154 (191)
+.+++||++++|+|.+|.+ .+. .++.+....+
T Consensus 153 v~v~~Gd~i~ipaGt~HA~--~g~----~~~Eiq~~SD 184 (302)
T TIGR00218 153 IKLKPGDFFYVPSGTPHAY--KGG----LVLEVMQNSD 184 (302)
T ss_pred cccCCCCEEEeCCCCcccc--cCc----eEEEEEcCCC
Confidence 5789999999999999994 333 3555554333
No 112
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=74.13 E-value=1.2 Score=43.45 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=36.1
Q ss_pred CCCCcCCceecC-CcEEEEEEeCE---EEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCC
Q 029565 75 SPGTRTPIHRHS-CEEIFIVLKGS---GTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNE 140 (191)
Q Consensus 75 ~PG~~~~~H~H~-~eE~~~Vl~G~---~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~ 140 (191)
+-|...+.-.|| .++.+|+-.+- +.-+.|=+-. ++.=..||+|+||+|.+|+++|.-.
T Consensus 763 E~~~~~~~v~hPIhDQS~YLd~~lr~RLkeEyGVe~W--------tfvQ~LGdAVfIPAGaPHQVrNLkS 824 (889)
T KOG1356|consen 763 EQGHEVPKVHHPIHDQSWYLDRYLRRRLKEEYGVEPW--------TFVQFLGDAVFIPAGAPHQVRNLKS 824 (889)
T ss_pred HhcCCCCcccCCCcccceeccHHHHHHHHHHhCCCcc--------chhhcccceEEecCCCcHHhhhhhh
Confidence 334444555677 78888885442 1112221111 1334689999999999999999754
No 113
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=70.86 E-value=12 Score=32.13 Aligned_cols=42 Identities=5% Similarity=-0.019 Sum_probs=34.9
Q ss_pred EEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCC
Q 029565 90 IFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNE 140 (191)
Q Consensus 90 ~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~ 140 (191)
++++.+|..++..++.. ...+.++..+++|.+..|.+.|...
T Consensus 41 li~v~~G~~~i~~~~g~---------~l~i~~p~~~~~p~~~~~~~~~~~~ 82 (291)
T PRK15186 41 LIKLTTGKISITTSSGE---------YITASGPMLIFLAKDQTIHITMEET 82 (291)
T ss_pred EEEeccceEEEEeCCCc---------eEEeCCCeEEEEeCCcEEEEEeccc
Confidence 78899999999875533 1467789999999999999999875
No 114
>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]
Probab=70.02 E-value=29 Score=29.25 Aligned_cols=54 Identities=11% Similarity=0.122 Sum_probs=38.9
Q ss_pred CcEEEEE-EeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCC-cEEEEeCCCCCcEEEEEEE
Q 029565 87 CEEIFIV-LKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVND-AHQVWNTNENEDLQMLVVI 150 (191)
Q Consensus 87 ~eE~~~V-l~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~-~H~~~N~g~~e~~~~l~v~ 150 (191)
..|+.+| +-|.+.+.+||+.| .+.+.|.+|+-.|. .-.|...+...|++|+.+.
T Consensus 75 RRElgiINIG~~G~i~v~g~~y----------~l~~rd~LYvg~G~~dv~F~s~d~~~pAkFY~~s 130 (278)
T COG3717 75 RRELGIINIGGPGTITVDGQEY----------ELGHRDALYVGMGAKDVTFSSIDGAAPAKFYYVS 130 (278)
T ss_pred eeeeeEEeeCCCceEEECCEEE----------EeccccEEEEecCccceEEeccCCCCcceEEEee
Confidence 5676655 68899999999984 77799999999883 3344333322578888775
No 115
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=68.54 E-value=18 Score=28.23 Aligned_cols=49 Identities=14% Similarity=0.170 Sum_probs=28.6
Q ss_pred EEEECCCCcCCceec--CCcEEEEEEeCEEEEEE---CCeeeecCCCCCceeeecCCeEEE
Q 029565 71 LQTFSPGTRTPIHRH--SCEEIFIVLKGSGTLYL---ASSSHEKHPGKPQEHFFFANSTFH 126 (191)
Q Consensus 71 ~~~i~PG~~~~~H~H--~~eE~~~Vl~G~~~v~i---~~~~~~l~~gk~~d~~l~~GD~v~ 126 (191)
...+++|...-..-- +...+++|++|.+.+.. +|++..+ ..+.|||.+=
T Consensus 8 ~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l-------~~~~~Gd~~G 61 (202)
T PRK13918 8 TVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTL-------RYVRPGEYFG 61 (202)
T ss_pred eeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEE-------EEecCCCeec
Confidence 344555554322222 23568999999999865 3444433 2557888653
No 116
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.02 E-value=23 Score=25.07 Aligned_cols=51 Identities=22% Similarity=0.309 Sum_probs=37.9
Q ss_pred CcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEEE
Q 029565 87 CEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLV 148 (191)
Q Consensus 87 ~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~ 148 (191)
.-|.+.|++|..++.+.+...+ ....+|..+.+|.+-.-.++-.. +..+||
T Consensus 41 ~~E~Mtvv~Gal~v~lpgs~dW--------q~~~~Ge~F~VpgnS~F~lqVae---at~YlC 91 (94)
T COG3123 41 APEEMTVVSGALTVLLPGSDDW--------QVYTAGEVFNVPGNSEFDLQVAE---ATSYLC 91 (94)
T ss_pred CceEEEEEeeEEEEEcCCCccc--------EEecCCceEEcCCCCeEEEEEee---eeehhe
Confidence 4578999999999998774421 25679999999999887777643 345555
No 117
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=67.87 E-value=61 Score=25.84 Aligned_cols=59 Identities=10% Similarity=0.080 Sum_probs=37.9
Q ss_pred CcEEEEEEeCE-EEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEEEEEeCCCc
Q 029565 87 CEEIFIVLKGS-GTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVVISRPPV 155 (191)
Q Consensus 87 ~eE~~~Vl~G~-~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~v~~~p~~ 155 (191)
.+.++.+|+|. +.+..++... ...+.|++.+.|+.+..=.....+. +++-+.++.++..
T Consensus 54 ~~R~l~~L~G~gl~L~~~~~~~--------~~~l~p~~~~~F~G~~~v~~~l~~G--~~~dfNlM~r~~~ 113 (184)
T PF05962_consen 54 YDRILTLLEGNGLRLTHDGQQE--------HTLLQPFQPFAFDGDWPVTSELLDG--PVRDFNLMTRRGR 113 (184)
T ss_dssp -EEEEEEEESS-EEEEETTCSE---------EEE-BT--EEEETTS-EEEEESSS---EEEEEEEE-TTT
T ss_pred CcEEEEEEeCCcEEEecCCCcc--------eeccCCCCcEEcCCCCeEEEEECCC--CEEEEEEEecCCc
Confidence 45689999999 8889988721 1357899999998777666665543 6888888766553
No 118
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=67.35 E-value=8 Score=25.52 Aligned_cols=18 Identities=28% Similarity=0.674 Sum_probs=14.8
Q ss_pred CcEEEEEEeCEEEEEECC
Q 029565 87 CEEIFIVLKGSGTLYLAS 104 (191)
Q Consensus 87 ~eE~~~Vl~G~~~v~i~~ 104 (191)
...+++|++|.+.+...+
T Consensus 17 ~~~~~~i~~G~v~~~~~~ 34 (91)
T PF00027_consen 17 CDHIYIILSGEVKVSSIN 34 (91)
T ss_dssp ESEEEEEEESEEEEEEET
T ss_pred CCEEEEEEECceEEEece
Confidence 577999999999986543
No 119
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=66.94 E-value=2.9 Score=24.09 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=13.1
Q ss_pred cccccccCCCCCCCCC
Q 029565 175 PYFWDEQCLQSPVKDE 190 (191)
Q Consensus 175 ~~~~~~~~~~~~~~~~ 190 (191)
+=-|+++||+++-|+|
T Consensus 17 ~GH~i~dCP~~~Pk~e 32 (32)
T PF13696_consen 17 KGHWIQDCPTNKPKGE 32 (32)
T ss_pred CCccHhHCCCCCCCCC
Confidence 3468999999998887
No 120
>PLN02288 mannose-6-phosphate isomerase
Probab=66.38 E-value=4.4 Score=36.46 Aligned_cols=21 Identities=10% Similarity=0.127 Sum_probs=18.7
Q ss_pred eeecCCeEEEECCCCcEEEEe
Q 029565 117 HFFFANSTFHIPVNDAHQVWN 137 (191)
Q Consensus 117 ~~l~~GD~v~ip~g~~H~~~N 137 (191)
+.++||+++|+|+|.+|.+.-
T Consensus 253 v~L~PGeaifl~ag~~HAYl~ 273 (394)
T PLN02288 253 VKLNPGEALYLGANEPHAYLS 273 (394)
T ss_pred EecCCCCEEEecCCCCceecC
Confidence 578999999999999999853
No 121
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=66.24 E-value=9.2 Score=33.63 Aligned_cols=30 Identities=27% Similarity=0.214 Sum_probs=26.7
Q ss_pred CCCCceeeecCCeEEEECCCCcEEEEeCCC
Q 029565 111 PGKPQEHFFFANSTFHIPVNDAHQVWNTNE 140 (191)
Q Consensus 111 ~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~ 140 (191)
+-|+.++...||.++|+|.|=+|-+.|...
T Consensus 259 E~kPIEc~q~pGEt~fVP~GWWHvVlNle~ 288 (407)
T KOG2130|consen 259 EYKPIECLQKPGETMFVPSGWWHVVLNLEP 288 (407)
T ss_pred ccCCceeeecCCceEEecCCeEEEEeccCc
Confidence 357778899999999999999999999876
No 122
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=65.34 E-value=12 Score=29.35 Aligned_cols=67 Identities=19% Similarity=0.217 Sum_probs=37.7
Q ss_pred CceecC-CcEEEEEEeCEE--EEEE--CCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEEEEE
Q 029565 81 PIHRHS-CEEIFIVLKGSG--TLYL--ASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVVI 150 (191)
Q Consensus 81 ~~H~H~-~eE~~~Vl~G~~--~v~i--~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~v~ 150 (191)
-..+|+ ..|.++-+.|+. .+.+ ++..-. ..+.+-|.+.+|..|.+.+|+||..--.-+ ++..|+++.
T Consensus 73 ~lERHp~tsQ~fiPl~~~~~~lvvVA~~~~~Pd--~~~lrAF~~~~gqgV~~~~GvWH~~~~~l~-~~~~f~vv~ 144 (165)
T PF04115_consen 73 MLERHPLTSQAFIPLDGSPWYLVVVAPDDDGPD--PETLRAFLAPGGQGVNYHRGVWHHPLLPLD-EPADFLVVD 144 (165)
T ss_dssp EEEE-TTB-EEEEESBS---EEEEEEESSSS-E--CCCEEEEEE-SS-EEEE-TT-EE-S-EESS-SEEEEEEEE
T ss_pred eeccCCCeeEEEEECCCCccEEEEEcCCCCCCC--ccceEEEEEcCCEEEEECCCceeCCccccC-CcceEEEEe
Confidence 357899 889999999887 2222 221111 122334788999999999999998755444 478888885
No 123
>PRK03606 ureidoglycolate hydrolase; Provisional
Probab=65.31 E-value=37 Score=26.76 Aligned_cols=69 Identities=22% Similarity=0.248 Sum_probs=44.9
Q ss_pred CceecC-CcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEEEEE
Q 029565 81 PIHRHS-CEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVVI 150 (191)
Q Consensus 81 ~~H~H~-~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~v~ 150 (191)
...+|+ ..|.++-+.|+--+.+-...-.-...+.+-|.+.+|+.|.+-+|+||..--.=+ .+..|+++.
T Consensus 72 ~mERHp~~sQafiPl~~~~~lvvVA~~~~~~~~~~raF~~~~~qgV~y~~G~WH~pl~~l~-~~~dF~vvd 141 (162)
T PRK03606 72 MLERHPLGSQAFIPLNGRPFLVVVAPDGDGDPGTPRAFVTNGRQGVNYHRGVWHHPLLALG-EVSDFLVVD 141 (162)
T ss_pred eEEeCCCceEEEEECCCCEEEEEEeCCCCCCccceEEEEecCCcEEEeCCCcccccccccC-CCceEEEEe
Confidence 357899 888999998887654311100001233345888999999999999997654434 356775553
No 124
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=65.15 E-value=25 Score=28.31 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=28.8
Q ss_pred EEECCCCcCCceecCCcEEEEEEeCEEEEEE---CCeeeecCCCCCceeeecCCeEEE
Q 029565 72 QTFSPGTRTPIHRHSCEEIFIVLKGSGTLYL---ASSSHEKHPGKPQEHFFFANSTFH 126 (191)
Q Consensus 72 ~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i---~~~~~~l~~gk~~d~~l~~GD~v~ 126 (191)
..+++|...-..--+...+++|++|.+.+.. +|++..+ ..+.|||.+-
T Consensus 34 ~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~-------~~~~~g~~~G 84 (226)
T PRK10402 34 FHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLI-------DFFAAPCFIG 84 (226)
T ss_pred eeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeee-------eecCCCCeEE
Confidence 3466665543322335679999999999864 3443333 2456777654
No 125
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=64.01 E-value=42 Score=25.72 Aligned_cols=51 Identities=22% Similarity=0.167 Sum_probs=38.8
Q ss_pred EEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEe--CCCCCcEEEEEE
Q 029565 89 EIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWN--TNENEDLQMLVV 149 (191)
Q Consensus 89 E~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N--~g~~e~~~~l~v 149 (191)
-+.+|++|+=++.+|++. +...+|+.+..+.+.+=.... .+.++|..-+.+
T Consensus 25 ~i~~vlQG~K~~~~g~~~----------~~Y~~g~~lv~~~~lPv~~~v~~AS~~~P~l~l~l 77 (155)
T PF06719_consen 25 SICIVLQGSKRVHLGDQV----------FEYDAGQYLVSSVDLPVESEVVEASPEEPYLALSL 77 (155)
T ss_pred eEEEEEeeeEEEEECCce----------EEecCCcEEEecCCCcEEEEEeeccCCCCEEEEEE
Confidence 478999999999999987 577899999999999876654 333345544444
No 126
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=62.77 E-value=28 Score=23.45 Aligned_cols=31 Identities=16% Similarity=0.341 Sum_probs=20.2
Q ss_pred EEECCCCcCCceecCCcEEEEEEeCEEEEEE
Q 029565 72 QTFSPGTRTPIHRHSCEEIFIVLKGSGTLYL 102 (191)
Q Consensus 72 ~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i 102 (191)
.++++|...-..--+...+++|++|.+.+..
T Consensus 20 ~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~ 50 (120)
T smart00100 20 VRYPAGEVIIRQGDVGDSFYIILSGEVRVYK 50 (120)
T ss_pred EEeCCCCEEEeCCCcCCcEEEEEeeEEEEEE
Confidence 4466665442222225669999999999875
No 127
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=56.53 E-value=36 Score=22.83 Aligned_cols=34 Identities=24% Similarity=0.404 Sum_probs=21.7
Q ss_pred EEEECCCCcCCceecCCcEEEEEEeCEEEEEECC
Q 029565 71 LQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLAS 104 (191)
Q Consensus 71 ~~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~~ 104 (191)
..++++|...-..-.+.+.++++++|.+.+...+
T Consensus 19 ~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~ 52 (115)
T cd00038 19 ERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLD 52 (115)
T ss_pred eeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEEC
Confidence 3446666544222223567999999999997654
No 128
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=56.11 E-value=5.8 Score=23.51 Aligned_cols=18 Identities=28% Similarity=0.597 Sum_probs=13.6
Q ss_pred ceehhHHHHHHHHhhhcc
Q 029565 3 RSWLIFLCLSFILLSANI 20 (191)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~ 20 (191)
|.||.|.+...+++.+.+
T Consensus 14 r~Wi~F~l~mi~vFi~li 31 (38)
T PF09125_consen 14 RGWIAFALAMILVFIALI 31 (38)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 789999987777666554
No 129
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=52.93 E-value=52 Score=27.20 Aligned_cols=49 Identities=22% Similarity=0.400 Sum_probs=39.8
Q ss_pred ecCCcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCC
Q 029565 84 RHSCEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNE 140 (191)
Q Consensus 84 ~H~~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~ 140 (191)
+|..+..+.||+|+..-..+|+.. + ....|||..+.+.|...++.-..+
T Consensus 116 rh~ad~y~tIL~G~~~~~~~g~~~------~--evy~pGd~~~l~rg~a~~y~m~~~ 164 (216)
T PF04622_consen 116 RHWADDYFTILSGEQWAWSPGSLE------P--EVYKPGDSHHLPRGEAKQYQMPPG 164 (216)
T ss_pred ceEeeeEEEEEEEEEEEEcCCCCC------c--eEeccCCEEEecCceEEEEEeCCC
Confidence 455788999999999988887641 1 367899999999999999988654
No 130
>PHA02984 hypothetical protein; Provisional
Probab=52.41 E-value=63 Score=27.73 Aligned_cols=53 Identities=9% Similarity=0.206 Sum_probs=37.5
Q ss_pred EEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEEEEE
Q 029565 90 IFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVVI 150 (191)
Q Consensus 90 ~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~v~ 150 (191)
++.+++|+..+.+...... ....+..|+.+.+.-+..|.+.-... .++++++.
T Consensus 96 FvlCl~G~~~I~~~~~~~~------is~~I~kGeaf~md~~t~h~i~T~~k--nl~L~Vi~ 148 (286)
T PHA02984 96 FVLCLNGKTSIECFNKGSK------ITNTIKKGEAFTLNLKTKYVTTTKDK--NLHLAVIT 148 (286)
T ss_pred EEEEcCCeEEEEEecCCce------eeeEEecCceEEEEccceEEEEeCCC--ceEEEEEE
Confidence 4555799999876543211 13689999999999999999876433 46666654
No 131
>KOG3384 consensus Selenoprotein [General function prediction only]
Probab=52.12 E-value=8.2 Score=29.74 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=17.5
Q ss_pred CCceehhHHHHHHHHhhhcc
Q 029565 1 MARSWLIFLCLSFILLSANI 20 (191)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (191)
|++||.+++||.++|.+.+.
T Consensus 1 ~~~m~vl~~ll~~vl~~~~~ 20 (154)
T KOG3384|consen 1 MAKMVVLSLLLALVLASTIS 20 (154)
T ss_pred CchHHHHHHHHHHHHHHHHH
Confidence 89999999999998887763
No 132
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.40 E-value=7.7 Score=35.93 Aligned_cols=64 Identities=14% Similarity=0.162 Sum_probs=38.6
Q ss_pred CCCC-cCCceecCCcEEEEEEeCEEEEEECCee----------------eecCCCCCceeeecCCeEEEECCCCcEEEEe
Q 029565 75 SPGT-RTPIHRHSCEEIFIVLKGSGTLYLASSS----------------HEKHPGKPQEHFFFANSTFHIPVNDAHQVWN 137 (191)
Q Consensus 75 ~PG~-~~~~H~H~~eE~~~Vl~G~~~v~i~~~~----------------~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N 137 (191)
|||+ ..++|+..-+-+++=++|+=...+-.-. -.+.+- ..++.+.|||.+|||.|..|+-..
T Consensus 325 PagSqGfaPHyDdIeaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlgeP-V~e~vle~GDllYfPRG~IHQA~t 403 (629)
T KOG3706|consen 325 PAGSQGFAPHYDDIEAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLGEP-VHEFVLEPGDLLYFPRGTIHQADT 403 (629)
T ss_pred CCCCCCCCCchhhhhhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhCCc-hHHhhcCCCcEEEecCcceeeccc
Confidence 4454 3567876666566666776543322100 001100 123578999999999999999876
Q ss_pred CC
Q 029565 138 TN 139 (191)
Q Consensus 138 ~g 139 (191)
..
T Consensus 404 ~~ 405 (629)
T KOG3706|consen 404 PA 405 (629)
T ss_pred cc
Confidence 54
No 133
>COG3615 TehB Uncharacterized protein/domain, possibly involved in tellurite resistance [Inorganic ion transport and metabolism]
Probab=50.22 E-value=32 Score=24.88 Aligned_cols=51 Identities=22% Similarity=0.196 Sum_probs=31.3
Q ss_pred EEEEEeCEEEEE-ECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEE
Q 029565 90 IFIVLKGSGTLY-LASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQM 146 (191)
Q Consensus 90 ~~~Vl~G~~~v~-i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~ 146 (191)
-+-|++|.+++. .+++.-.+.+ +-+...+ +.-++||-.+|++...+| ++++
T Consensus 39 kLsVl~G~vk~~~~~ee~~~~~e---~~~~~ea-~~~~~~PQ~WHrVea~tD--D~e~ 90 (99)
T COG3615 39 KLSVLKGAVKFLGLAEEGETEPE---HVFSIEA-QFPVFPPQAWHRVEAMTD--DAEF 90 (99)
T ss_pred EEEEEeceeEEEEEcCCCCccce---EEEeecC-CCCccChhHeeeeeeccc--ccEE
Confidence 377899999885 4443111110 0123333 566789999999998887 3544
No 134
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=49.10 E-value=79 Score=21.66 Aligned_cols=30 Identities=17% Similarity=0.078 Sum_probs=21.6
Q ss_pred ecCCeEEEECC-CCcEEEEeCCCCCcEEEEEE
Q 029565 119 FFANSTFHIPV-NDAHQVWNTNENEDLQMLVV 149 (191)
Q Consensus 119 l~~GD~v~ip~-g~~H~~~N~g~~e~~~~l~v 149 (191)
-.+|+.+++++ +..|++.-... ...++..+
T Consensus 66 p~~g~~v~F~~~~~~H~v~~v~~-~~~R~~l~ 96 (100)
T PF13640_consen 66 PKPGRLVIFPSDNSLHGVTPVGE-GGRRYSLT 96 (100)
T ss_dssp -BTTEEEEEESCTCEEEEEEE-E-ESEEEEEE
T ss_pred CCCCEEEEEeCCCCeecCcccCC-CCCEEEEE
Confidence 67999999999 99999987733 24555544
No 135
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=48.80 E-value=43 Score=25.24 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=29.4
Q ss_pred HHHHHhhhccccccCcCcccCCCeeEecCCCCCCc
Q 029565 11 LSFILLSANIEADASHCSIKGFPLVRNISELPQDN 45 (191)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~V~~i~d~~~~~ 45 (191)
|+.+.++..++++.+..++...|+.....+.+...
T Consensus 21 l~i~~l~~c~~~~es~~~k~~~pVT~hVen~e~~p 55 (131)
T PF10794_consen 21 LVIIVLCGCIANNESAASKVVNPVTFHVENAEGQP 55 (131)
T ss_pred HHHHHHhcccccchhhhceecccEEEEEecCCCCc
Confidence 67777777889999999999999999988776644
No 136
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=46.60 E-value=12 Score=33.58 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.9
Q ss_pred ecCCeEEEECCCCcEEEEeCCCC
Q 029565 119 FFANSTFHIPVNDAHQVWNTNEN 141 (191)
Q Consensus 119 l~~GD~v~ip~g~~H~~~N~g~~ 141 (191)
=.||.+|++|+|=.|++.|.+++
T Consensus 272 Qepge~VFvPsGW~hQV~NL~dT 294 (427)
T KOG2131|consen 272 QEPGETVFVPSGWHHQVLNLGDT 294 (427)
T ss_pred ccCCceeeccCccccccccccce
Confidence 36999999999999999999984
No 137
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=46.48 E-value=61 Score=26.01 Aligned_cols=48 Identities=29% Similarity=0.371 Sum_probs=28.1
Q ss_pred EEEECCCCcCCceecCCcEEEEEEeCEEEEEE--CCeeeecCCCCCceeeecCCeEE
Q 029565 71 LQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYL--ASSSHEKHPGKPQEHFFFANSTF 125 (191)
Q Consensus 71 ~~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i--~~~~~~l~~gk~~d~~l~~GD~v 125 (191)
...+++|...-.--.....+++|++|.+.+.. +++...+ ..+.+||.+
T Consensus 32 ~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i-------~~~~~g~~~ 81 (236)
T PRK09392 32 LQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETTL-------AILRPVSTF 81 (236)
T ss_pred eeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEEE-------EEeCCCchh
Confidence 34466665443222235679999999999864 3333322 256677754
No 138
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=46.38 E-value=1.8e+02 Score=24.61 Aligned_cols=106 Identities=20% Similarity=0.231 Sum_probs=58.5
Q ss_pred CCCCCCccCCCCcEEEEEEe--eccC-CceeEEEEEEEECCCC---cCCceecCC---------cEEEEE----EeCEE-
Q 029565 39 SELPQDNYGREGLAHITVAG--SILH-GMKEIEVWLQTFSPGT---RTPIHRHSC---------EEIFIV----LKGSG- 98 (191)
Q Consensus 39 ~d~~~~~~~~~G~~~~~~~~--~~~~-g~~~~~~~~~~i~PG~---~~~~H~H~~---------eE~~~V----l~G~~- 98 (191)
++.+.+.++ .|...+++.- +... ....+-+. ..+-||+ +.|+|.|.. ||.+|- -+|-+
T Consensus 124 ~~~~~e~RG-kG~NtR~VhNIlp~~~~~AdsLLVv-EV~Tp~Gn~SSYPPHKHD~d~~p~Es~LEEtYYHrlnP~QGF~f 201 (270)
T COG3718 124 EDNGVEHRG-KGRNTRYVHNILPEDAPVADSLLVV-EVITPGGNWSSYPPHKHDEDNLPHESYLEETYYHRLNPPQGFAF 201 (270)
T ss_pred ccCCceeec-cccceeeEEccCCCCCccccceEEE-EEEcCCCCcCCCCCCcccccCCccchhhhhhhhhccCccccceE
Confidence 455554544 5555444432 2222 12234443 3466664 468999973 344443 24433
Q ss_pred -EEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEEEEEeCCC
Q 029565 99 -TLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVVISRPP 154 (191)
Q Consensus 99 -~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~v~~~p~ 154 (191)
++..++.+.+. ...+.-||++.+|.|- |-+-.... -++.+|.|...|.
T Consensus 202 QRVYTddrsLDE------tmaV~~~dvvlVP~GY-HPv~ap~G-Yd~YYLNVMAGP~ 250 (270)
T COG3718 202 QRVYTDDRSLDE------TMAVENGDVVLVPKGY-HPVGAPHG-YDSYYLNVMAGPK 250 (270)
T ss_pred EEEEcCCCcccc------eeeeecCCEEEecCCc-CccccCCc-cceeeeeeecCcc
Confidence 34556654322 2578899999999884 34444444 3688888887553
No 139
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=44.96 E-value=12 Score=33.19 Aligned_cols=21 Identities=10% Similarity=0.235 Sum_probs=16.7
Q ss_pred eeecCCeEEEECCCCcEEEEe
Q 029565 117 HFFFANSTFHIPVNDAHQVWN 137 (191)
Q Consensus 117 ~~l~~GD~v~ip~g~~H~~~N 137 (191)
+.+.||+++|+|+|.+|.+.-
T Consensus 252 v~L~pGeaifl~a~~~HAYl~ 272 (373)
T PF01238_consen 252 VELQPGEAIFLPAGEPHAYLS 272 (373)
T ss_dssp EEE-TT-EEEEHTTHHEEEEE
T ss_pred EEecCCceEEecCCCcccccc
Confidence 368899999999999999865
No 140
>PLN02868 acyl-CoA thioesterase family protein
Probab=42.58 E-value=59 Score=29.05 Aligned_cols=48 Identities=10% Similarity=0.223 Sum_probs=28.1
Q ss_pred EEECCCCcCCceecCCcEEEEEEeCEEEEEECC--eeeecCCCCCceeeecCCeEEE
Q 029565 72 QTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLAS--SSHEKHPGKPQEHFFFANSTFH 126 (191)
Q Consensus 72 ~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~~--~~~~l~~gk~~d~~l~~GD~v~ 126 (191)
.++++|...-..-.+...+++|++|++++...+ ....+ ..+.+||.+-
T Consensus 34 ~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l-------~~l~~Gd~fG 83 (413)
T PLN02868 34 KRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRPE-------FLLKRYDYFG 83 (413)
T ss_pred EEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEEE-------EEeCCCCEee
Confidence 445666544333233567999999999986522 12112 3557777654
No 141
>PF15240 Pro-rich: Proline-rich
Probab=42.42 E-value=22 Score=28.56 Aligned_cols=31 Identities=19% Similarity=0.180 Sum_probs=15.2
Q ss_pred hhHHHHHHHHhhhccccccC-cCcccCCCeeEe
Q 029565 6 LIFLCLSFILLSANIEADAS-HCSIKGFPLVRN 37 (191)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~V~~ 37 (191)
|+.||-++||+++| |-..+ ..+-+....|+.
T Consensus 2 LlVLLSvALLALSS-AQ~~dEdv~~e~~~~~~~ 33 (179)
T PF15240_consen 2 LLVLLSVALLALSS-AQSTDEDVSQEESPSVIS 33 (179)
T ss_pred hhHHHHHHHHHhhh-ccccccccccccCccccc
Confidence 34444455555555 44433 445555555444
No 142
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=41.59 E-value=28 Score=26.59 Aligned_cols=38 Identities=21% Similarity=0.107 Sum_probs=20.3
Q ss_pred ceehhHHHHHHHHhhhccccccCcCcccCCCeeEecCC
Q 029565 3 RSWLIFLCLSFILLSANIEADASHCSIKGFPLVRNISE 40 (191)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~d 40 (191)
|++++.+|++++|++++.++++..=.+.|..-+..-.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~a~~~~~kpGlWe~t~~~~ 39 (162)
T PF12276_consen 2 KRRLLLALALALLALAAAAAAAAPDIKPGLWEVTTTTE 39 (162)
T ss_pred chHHHHHHHHHHHHhhcccccccCCCCCcccEEEEEec
Confidence 34455555555554344355555555677666655333
No 143
>PRK15206 long polar fimbrial protein LpfD; Provisional
Probab=41.45 E-value=25 Score=31.32 Aligned_cols=38 Identities=18% Similarity=0.118 Sum_probs=21.3
Q ss_pred CCceehhHHHHHHHHhhhcc-c-cccC--cCcccCCCeeEec
Q 029565 1 MARSWLIFLCLSFILLSANI-E-ADAS--HCSIKGFPLVRNI 38 (191)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~-~-~~~~--~~~~~~~~~V~~i 38 (191)
|-||+++++.++++|..+++ | +++. .|...|.+...++
T Consensus 1 ~~~k~~~~~~~l~~~~~~~~~a~~a~~~G~C~~~gGt~~y~~ 42 (359)
T PRK15206 1 MLKKLMMFTGLLGGSVLFSGQALAAADWGPCTPEGGTHIFSA 42 (359)
T ss_pred ChHHHHHHHHHHHHHHHhccchhhcccCCcccCCCCcEEEEE
Confidence 55665554444444444333 3 1333 6988888766664
No 144
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=40.60 E-value=1.8e+02 Score=22.79 Aligned_cols=58 Identities=14% Similarity=0.001 Sum_probs=35.6
Q ss_pred eecC-CcEEEEEEeCEEEEEEC-------------CeeeecCCCC--CceeeecCCeEEEECCCCcEEEEeCCC
Q 029565 83 HRHS-CEEIFIVLKGSGTLYLA-------------SSSHEKHPGK--PQEHFFFANSTFHIPVNDAHQVWNTNE 140 (191)
Q Consensus 83 H~H~-~eE~~~Vl~G~~~v~i~-------------~~~~~l~~gk--~~d~~l~~GD~v~ip~g~~H~~~N~g~ 140 (191)
..|. .-++=++++|+=.+... .+.+.+.++. ...+.+.||+.+++=+|.+|+.....+
T Consensus 64 E~HrkYiDiqill~G~E~i~~s~~~~~~~~e~y~~e~Di~~~~~~~~e~~v~L~~G~faiFfP~e~H~P~c~~~ 137 (154)
T COG2731 64 ELHRKYIDIQILLKGQEGIEYSPKETAQVKEDYDEEKDIIFYKGIEDESTVELNPGMFAIFFPGEPHRPGCNVG 137 (154)
T ss_pred hhhhheEEEEEEEeceeeeEEccCcCCccccccccccCEEeecCCccceEEEeCCCCEEEECCCCccccccccC
Confidence 4444 55666666666544322 1223333443 445788899999999999998765544
No 145
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=39.94 E-value=2.1e+02 Score=23.72 Aligned_cols=32 Identities=13% Similarity=0.104 Sum_probs=25.1
Q ss_pred eeeecCCeEEEECCCCcEEEEeCCCCCcEEEEEE
Q 029565 116 EHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVV 149 (191)
Q Consensus 116 d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~v 149 (191)
.+...+|+++++|....|...-.+.. .++.++
T Consensus 142 ~Vkp~aG~~vlfps~~lH~v~pVt~G--~R~~~~ 173 (226)
T PRK05467 142 RVKLPAGDLVLYPSTSLHRVTPVTRG--VRVASF 173 (226)
T ss_pred EEecCCCeEEEECCCCceeeeeccCc--cEEEEE
Confidence 46788999999999999999886653 455444
No 146
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=38.50 E-value=1.2e+02 Score=24.25 Aligned_cols=33 Identities=12% Similarity=0.236 Sum_probs=21.0
Q ss_pred CcEEEEEEeCEEEEEEC---CeeeecCCCCCceeeecCCeEEE
Q 029565 87 CEEIFIVLKGSGTLYLA---SSSHEKHPGKPQEHFFFANSTFH 126 (191)
Q Consensus 87 ~eE~~~Vl~G~~~v~i~---~~~~~l~~gk~~d~~l~~GD~v~ 126 (191)
...+++|++|.+.+... |+...+ ..+.|||.+-
T Consensus 55 ~~~ly~v~~G~v~~~~~~~~G~e~i~-------~~~~~gd~~g 90 (235)
T PRK11161 55 LKSLYAIRSGTIKSYTITEQGDEQIT-------GFHLAGDLVG 90 (235)
T ss_pred cceEEEEeeceEEEEEECCCCCEEEE-------EeccCCceec
Confidence 45589999999998642 333222 1346777763
No 147
>PRK11396 hypothetical protein; Provisional
Probab=38.34 E-value=2.2e+02 Score=23.14 Aligned_cols=105 Identities=10% Similarity=0.073 Sum_probs=56.6
Q ss_pred ecCCCCCCccCC-CCcEEEEEEeeccCCceeEEEEEEEECCCCcCCceecC-CcEEEEEEeCE-EEEEECCeeeecCCCC
Q 029565 37 NISELPQDNYGR-EGLAHITVAGSILHGMKEIEVWLQTFSPGTRTPIHRHS-CEEIFIVLKGS-GTLYLASSSHEKHPGK 113 (191)
Q Consensus 37 ~i~d~~~~~~~~-~G~~~~~~~~~~~~g~~~~~~~~~~i~PG~~~~~H~H~-~eE~~~Vl~G~-~~v~i~~~~~~l~~gk 113 (191)
++.++|...+.- .|.......++.....=...+...+|.. ..+.-..+ .+.++.+|+|. +.+..++..
T Consensus 5 d~~~mp~~~WkNGgG~TrEI~~~P~~~~dF~WRiSiA~I~~--~GpFS~FpGidR~i~lL~G~g~~L~~~~~~------- 75 (191)
T PRK11396 5 DMRKMSVNLWRNAAGETREICTFPPAKRDFYWRASIASIAA--NGEFSLFPGMERIVTLLEGGEMFLESADRF------- 75 (191)
T ss_pred cHhHCCcccccCCCeEEEEEEEcCCCCCCceEEEEEEEecC--CCCCCCCCCccEEEEEEECCCEEEeeCCcc-------
Confidence 344555444432 3444444444422111123344444543 33444455 67799999995 556666643
Q ss_pred CceeeecCCeEEEECCCCcEEEEeCCCCCcE-EEEEEEeCCC
Q 029565 114 PQEHFFFANSTFHIPVNDAHQVWNTNENEDL-QMLVVISRPP 154 (191)
Q Consensus 114 ~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~-~~l~v~~~p~ 154 (191)
++.+.+++.+.|+.+..-..+..+. +. +-+.++.++.
T Consensus 76 --~~~l~~~~p~~F~Gd~~v~a~L~~G--~v~~dfNvM~rr~ 113 (191)
T PRK11396 76 --NHTLKPLQPFAFAADQVVKAKLTAG--QMSMDFNIMTRLD 113 (191)
T ss_pred --ceecCCCCCeEeCCCCeeEEEECCC--CeEEEEEEEecCC
Confidence 1345678888888887766666543 43 4566655443
No 148
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=38.00 E-value=87 Score=23.85 Aligned_cols=64 Identities=17% Similarity=0.168 Sum_probs=39.9
Q ss_pred CceeEEEEEEEECCCCcCCceecCCcEEEEEE----eCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEe
Q 029565 63 GMKEIEVWLQTFSPGTRTPIHRHSCEEIFIVL----KGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWN 137 (191)
Q Consensus 63 g~~~~~~~~~~i~PG~~~~~H~H~~eE~~~Vl----~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N 137 (191)
+.+.+.+..+.|.+|...... .+.|+..++ +|++.+.+.++. | ..++|||.+.+-.|..--+++
T Consensus 13 ~~kN~~v~fIvl~~g~~tkTk--dg~~v~~~kVaD~TgsI~isvW~e~-----~----~~~~PGDIirLt~Gy~Si~qg 80 (134)
T KOG3416|consen 13 GLKNINVTFIVLEYGRATKTK--DGHEVRSCKVADETGSINISVWDEE-----G----CLIQPGDIIRLTGGYASIFQG 80 (134)
T ss_pred hhhcceEEEEEEeeceeeecc--CCCEEEEEEEecccceEEEEEecCc-----C----cccCCccEEEecccchhhhcC
Confidence 445566666777776543221 133443333 678888777754 3 378899999998886655544
No 149
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=36.87 E-value=39 Score=26.97 Aligned_cols=33 Identities=15% Similarity=0.111 Sum_probs=22.6
Q ss_pred CcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECC
Q 029565 87 CEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPV 129 (191)
Q Consensus 87 ~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~ 129 (191)
..-++|+++|+..+..+++. +.+.+||.+++..
T Consensus 135 ~~~l~~~~~G~~~i~~~~~~----------~~L~~~d~l~~~~ 167 (184)
T PF05962_consen 135 STVLVYVLEGAWSITEGGNC----------ISLSAGDLLLIDD 167 (184)
T ss_dssp SEEEEEESSS-EEECCCEEE----------EEE-TT-EEEEES
T ss_pred CEEEEEEeeCcEEEecCCCc----------eEcCCCCEEEEeC
Confidence 44578999998777666554 5788999999877
No 150
>PHA02890 hypothetical protein; Provisional
Probab=36.29 E-value=1.4e+02 Score=25.52 Aligned_cols=50 Identities=12% Similarity=0.248 Sum_probs=35.0
Q ss_pred EEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEEEEE
Q 029565 91 FIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVVI 150 (191)
Q Consensus 91 ~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~v~ 150 (191)
+.+|+|+..+.+..... .....+..||.+.+.-+..|.+.- + .+.++++.
T Consensus 96 VlCL~Gs~~In~~~~d~------~iS~~I~kGeaF~mdv~t~H~i~T--K--nl~L~Vik 145 (278)
T PHA02890 96 VACIEGSCKINVNIGDR------EISDHIHENQGFIMDVGLDHAIDS--D--NVGLFITK 145 (278)
T ss_pred EEEeCCeEEEEEecCCc------eeeeeeecCceEEEEccceEEEEc--c--ceeEEEEE
Confidence 44579999886543321 113588999999999999999976 3 36666654
No 151
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=35.37 E-value=84 Score=23.98 Aligned_cols=51 Identities=16% Similarity=0.230 Sum_probs=28.8
Q ss_pred EEEECCCCcCCceecCCcEEEEEEeCEEEEEECC---eeeecCCCCCceeeecCCeEEEEC
Q 029565 71 LQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLAS---SSHEKHPGKPQEHFFFANSTFHIP 128 (191)
Q Consensus 71 ~~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~~---~~~~l~~gk~~d~~l~~GD~v~ip 128 (191)
...+++|...-..--+.+-+++|++|.+.+.... ++..+ ..+.+||.+=..
T Consensus 25 ~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~-------~~~~~g~~fg~~ 78 (214)
T COG0664 25 VRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIIL-------GFLGPGDFFGEL 78 (214)
T ss_pred eEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEE-------EEecCCchhhhH
Confidence 3445555333222233445899999999986543 23222 146688876544
No 152
>PRK10626 hypothetical protein; Provisional
Probab=34.19 E-value=29 Score=29.18 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=17.1
Q ss_pred CCceehhHHHHHHHHhhhccccccCcCcccCCC
Q 029565 1 MARSWLIFLCLSFILLSANIEADASHCSIKGFP 33 (191)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (191)
|-|++++.++| ||++++ |.+..+|.....-
T Consensus 1 ~mrk~~l~~~L--~l~s~~-a~A~~qC~V~l~~ 30 (239)
T PRK10626 1 MMRKMLLAALL--SLTAMQ-AQADYQCSVTPQD 30 (239)
T ss_pred ChHHHHHHHHH--HHHHHH-HHhccCCCCCCCC
Confidence 56666554422 234443 6667899866553
No 153
>PRK13395 ureidoglycolate hydrolase; Provisional
Probab=34.06 E-value=2.4e+02 Score=22.41 Aligned_cols=69 Identities=16% Similarity=0.109 Sum_probs=43.3
Q ss_pred CceecC-CcEEEEEEeC-EEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEEEEE
Q 029565 81 PIHRHS-CEEIFIVLKG-SGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVVI 150 (191)
Q Consensus 81 ~~H~H~-~eE~~~Vl~G-~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~v~ 150 (191)
...+|+ ..+.++-+.| .-.+.+-...-...+...+-|.+.+|..|-+-+|+||..--.=+ .+..|+++.
T Consensus 72 ~mERHp~~sQafiPl~~~~~~lvVvap~~~~~pd~~~aF~~~g~qgV~y~~GtWH~pl~~L~-~~~dF~vvd 142 (171)
T PRK13395 72 MMERHPLGSQAFIPLAAVSRYAVVVAPAGEFRPDEMRAFLAEGWQGVNYAKGVWHHPLLALD-AVSDFVVVD 142 (171)
T ss_pred eEEECCCceEEEEECCCCCCEEEEEccCCCCCCCceEEEEecCCcEEEeCCCcccccccccC-CCccEEEEe
Confidence 357888 6888888888 43222211000111223345888999999999999998755444 356777764
No 154
>COG3555 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases [Posttranslational modification, protein turnover, chaperones]
Probab=33.13 E-value=38 Score=29.27 Aligned_cols=69 Identities=17% Similarity=0.215 Sum_probs=53.1
Q ss_pred EEEEECCCCcCCceecCC-----cEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcE
Q 029565 70 WLQTFSPGTRTPIHRHSC-----EEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDL 144 (191)
Q Consensus 70 ~~~~i~PG~~~~~H~H~~-----eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~ 144 (191)
+.-+++||...+.|+-+. ..+.++.-+...+.++++. ..+..|..+.+..--+|...|.++ .+-
T Consensus 141 ~F~~l~pG~~l~~HR~p~~g~~r~hLGli~P~~~~i~vd~e~----------~sW~dGe~~~~d~t~~h~~~n~te-~~r 209 (291)
T COG3555 141 MFGELPPGKHLPPHRDPFAGMLRLHLGLITPDAVFIKVDHER----------HSWRDGEFYLFDETYPHWVKNKTE-ITR 209 (291)
T ss_pred hccccCCcccCCcccCcchhHHHhhcccccCcceeeecCchh----------hceecCCceecchhhhcccccccc-cce
Confidence 344689999999996652 4577888888888888887 367788888899999999999988 454
Q ss_pred EEEEE
Q 029565 145 QMLVV 149 (191)
Q Consensus 145 ~~l~v 149 (191)
.++.+
T Consensus 210 ~il~~ 214 (291)
T COG3555 210 IILFV 214 (291)
T ss_pred EEEec
Confidence 44444
No 155
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=32.15 E-value=86 Score=24.00 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=20.8
Q ss_pred cEEEEEEeCEEEEEE---CCeeeecCCCCCceeeecCCeEE
Q 029565 88 EEIFIVLKGSGTLYL---ASSSHEKHPGKPQEHFFFANSTF 125 (191)
Q Consensus 88 eE~~~Vl~G~~~v~i---~~~~~~l~~gk~~d~~l~~GD~v 125 (191)
+.+++|++|.+.+.. +|++..+ ..+.+||.+
T Consensus 12 ~~~~~i~~G~v~~~~~~~~G~e~~l-------~~~~~g~~~ 45 (193)
T TIGR03697 12 EKVYFLRRGAVKLSRVYESGEEITV-------ALLRENSVF 45 (193)
T ss_pred CcEEEEEecEEEEEEeCCCCcEeee-------EEccCCCEe
Confidence 458999999999864 3444333 256788865
No 156
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=31.98 E-value=81 Score=30.89 Aligned_cols=49 Identities=10% Similarity=0.182 Sum_probs=30.7
Q ss_pred EEEEECCCCcCCceecCCcEEEEEEeCEEEEEEC--CeeeecCCCCCceeeecCCeEE
Q 029565 70 WLQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLA--SSSHEKHPGKPQEHFFFANSTF 125 (191)
Q Consensus 70 ~~~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~--~~~~~l~~gk~~d~~l~~GD~v 125 (191)
....++||...=..-...+++++|.+|++++... ++...+ ..+.+||.+
T Consensus 398 ~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~~~~e~~l-------~~l~~Gd~F 448 (823)
T PLN03192 398 KAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSEGEKERVV-------GTLGCGDIF 448 (823)
T ss_pred heeeeCCCCEEEECCCCCceEEEEEecEEEEEEecCCcceee-------EEccCCCEe
Confidence 3456778775543334467899999999998652 222222 256778754
No 157
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=31.69 E-value=2.3e+02 Score=22.21 Aligned_cols=37 Identities=11% Similarity=0.184 Sum_probs=28.3
Q ss_pred EEEEECCCCcCCcee-cCCcEEEEEEeCEEEEEECCee
Q 029565 70 WLQTFSPGTRTPIHR-HSCEEIFIVLKGSGTLYLASSS 106 (191)
Q Consensus 70 ~~~~i~PG~~~~~H~-H~~eE~~~Vl~G~~~v~i~~~~ 106 (191)
...++.+|......- -+.+.+-.+|+|++.+..+|+.
T Consensus 29 ~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~g~f 66 (153)
T PF04831_consen 29 EIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCDGRF 66 (153)
T ss_pred eEEEecCCceeeecCCcccceEeEEEcCcEEEEECCEe
Confidence 456678887765443 3367899999999999999986
No 158
>KOG4425 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.56 E-value=9.3 Score=35.52 Aligned_cols=66 Identities=23% Similarity=0.156 Sum_probs=39.6
Q ss_pred eeecCCeEEEECCCCcEEEEeCCCCCcEEEEEEE---eCCCceeeecCCCCCccccccc--CccccccccCCC
Q 029565 117 HFFFANSTFHIPVNDAHQVWNTNENEDLQMLVVI---SRPPVKVFIYEDWSMPHTAAKL--KFPYFWDEQCLQ 184 (191)
Q Consensus 117 ~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~v~---~~p~~~~~~~~~w~~~~~~~~~--~~~~~~~~~~~~ 184 (191)
..+..+|.+|+|.|+.|+|+..+. -+.+-|-+ -+-++........+.+...-++ +--.+++.||-.
T Consensus 778 iel~dndiyfiprnvihqfktvsa--c~slawhirlkhy~dvde~tqas~sdp~fdcgltgkrelevdsqcvr 848 (900)
T KOG4425|consen 778 IELCDNDIYFIPRNVIHQFKTVSA--CCSLAWHIRLKHYHDVDEATQASESDPNFDCGLTGKRELEVDSQCVR 848 (900)
T ss_pred eeeccCceeeccHHHhhhhhhHHH--HhhhHHHhhhhhcccccccccccccCCCccccccccccccccchhee
Confidence 467889999999999999998775 23333322 1111111111222335555555 666788888854
No 159
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=31.22 E-value=2.4e+02 Score=21.58 Aligned_cols=20 Identities=5% Similarity=-0.044 Sum_probs=15.0
Q ss_pred eeecCCeEEEECCCCcEEEE
Q 029565 117 HFFFANSTFHIPVNDAHQVW 136 (191)
Q Consensus 117 ~~l~~GD~v~ip~g~~H~~~ 136 (191)
+.+.||+.+++-|+..|+..
T Consensus 108 v~l~~G~F~iffP~daH~P~ 127 (149)
T PRK10202 108 VEVHEGQIVICDIHEAYRFI 127 (149)
T ss_pred EEeCCCeEEEECCcccccCC
Confidence 56777788777777777765
No 160
>KOG4281 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.21 E-value=24 Score=29.25 Aligned_cols=88 Identities=16% Similarity=0.229 Sum_probs=51.2
Q ss_pred eeEEEEEEEECCCCcCCceecCCc-EEEEEEeCEEEEEECCee-----ee------cCCCC---CceeeecCCeEEEEC-
Q 029565 65 KEIEVWLQTFSPGTRTPIHRHSCE-EIFIVLKGSGTLYLASSS-----HE------KHPGK---PQEHFFFANSTFHIP- 128 (191)
Q Consensus 65 ~~~~~~~~~i~PG~~~~~H~H~~e-E~~~Vl~G~~~v~i~~~~-----~~------l~~gk---~~d~~l~~GD~v~ip- 128 (191)
.+|++.+..++|++.+|+|-|++- -+.=+|=|++.+..-+-. .. ++.+| ..+++-.-+-++..|
T Consensus 73 D~FSigiFclp~ss~IPLHdHPgM~v~sKllyGtmhVksyDw~ePd~~~~~dp~q~~r~akl~~d~~~T~~s~~~~LyP~ 152 (236)
T KOG4281|consen 73 DRFSIGIFCLPPSSVIPLHDHPGMTVLSKLLYGTMHVKSYDWVEPDEPQTEDPHQPVRPAKLVSDKEFTAASPASTLYPK 152 (236)
T ss_pred CceeEEEEEcCCCCeeecCCCcchHHHHHhhhceeEeeeccccCCCCcccCCCCcceeeeeEeccceecCCCCCcEeeec
Confidence 378999999999999999999954 455667788877432211 00 00000 011122223334444
Q ss_pred CCCcEEEEeCCCCCcEEEEEEEeCCC
Q 029565 129 VNDAHQVWNTNENEDLQMLVVISRPP 154 (191)
Q Consensus 129 ~g~~H~~~N~g~~e~~~~l~v~~~p~ 154 (191)
.|-.|++..... ++.+|-|.++|.
T Consensus 153 ~ggn~h~f~a~t--~cAvlDILsPPY 176 (236)
T KOG4281|consen 153 TGGNHHCFTAIT--PCAVLDILSPPY 176 (236)
T ss_pred CCCcEeeeeecc--ceeEEeeccCCC
Confidence 344555555443 688999887544
No 161
>COG1741 Pirin-related protein [General function prediction only]
Probab=30.23 E-value=3.5e+02 Score=23.15 Aligned_cols=78 Identities=13% Similarity=0.158 Sum_probs=45.7
Q ss_pred EEEEEEEECCCCcCCceecC-CcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEE
Q 029565 67 IEVWLQTFSPGTRTPIHRHS-CEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQ 145 (191)
Q Consensus 67 ~~~~~~~i~PG~~~~~H~H~-~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~ 145 (191)
+....+.+++|.....+ =. .+-++||++|.+ .++++. . ..+|.+.+..+..-.+...++ +.++
T Consensus 173 ~~~~dl~l~~g~~~~l~-~~~~~~~l~v~~G~l--~v~g~~-----------~-~~~~~l~i~~g~~i~l~a~~~-~~a~ 236 (276)
T COG1741 173 LHYVDLRLEAGARLQLP-PAGRRAYLYVIEGTL--EVNGQH-----------E-TDGDGLAILDGDEITLVADSP-AGAR 236 (276)
T ss_pred eEEEEEEeCCCceEecC-CCCceEEEEEEEeEE--EEcccc-----------c-ccccceEEecCCeEEEEecCC-CCeE
Confidence 44555667777776666 22 455899999954 455543 0 234444454444434555445 4689
Q ss_pred EEEEEeCCCce-eeec
Q 029565 146 MLVVISRPPVK-VFIY 160 (191)
Q Consensus 146 ~l~v~~~p~~~-~~~~ 160 (191)
+|.+-..|..+ ...|
T Consensus 237 vLL~~g~P~~~~~~~~ 252 (276)
T COG1741 237 VLLLDGPPLGEPIVIY 252 (276)
T ss_pred EEEEcCCCCCCceeEE
Confidence 99987766544 3444
No 162
>TIGR00752 slp outer membrane lipoprotein, Slp family. Slp superfamily members are present in the Gram-negative gamma proteobacteria Escherichia coli, which also contains a close paralog, Haemophilus influenzae and Pasteurella multocida and Vibrio cholera. The known members of the family to date share a motif LX[GA]C near the N-terminus, which is compatible with the possibility that the protein is modified into a lipoprotein with Cys as the new N-terminus. Slp from Escherichia coli is known to be a lipoprotein of the outer membrane and to be expressed in response to carbon starvation.
Probab=29.64 E-value=2.6e+02 Score=22.43 Aligned_cols=18 Identities=6% Similarity=0.074 Sum_probs=10.9
Q ss_pred CCceeEEEEEEEECCCCc
Q 029565 62 HGMKEIEVWLQTFSPGTR 79 (191)
Q Consensus 62 ~g~~~~~~~~~~i~PG~~ 79 (191)
.+.+.+++...-|...+.
T Consensus 64 ~~~T~lEVv~~PLd~~gr 81 (182)
T TIGR00752 64 ANQTKLEIASLPLDSIAK 81 (182)
T ss_pred CCceEEEEEEcccCCCCC
Confidence 344577777666666544
No 163
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=28.25 E-value=86 Score=30.19 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=19.4
Q ss_pred eecC-CcEEEEEEeCEEEEEECCeee
Q 029565 83 HRHS-CEEIFIVLKGSGTLYLASSSH 107 (191)
Q Consensus 83 H~H~-~eE~~~Vl~G~~~v~i~~~~~ 107 (191)
|.-+ .+-+.||++|++++.-|++..
T Consensus 584 HtGESvDaLcFvVsGSLEVIQDDEVV 609 (971)
T KOG0501|consen 584 HTGESVDALCFVVSGSLEVIQDDEVV 609 (971)
T ss_pred ecCCccceEEEEEecceEEeecCcEE
Confidence 4434 466899999999999888763
No 164
>PRK15137 DNA-specific endonuclease I; Provisional
Probab=28.15 E-value=39 Score=28.33 Aligned_cols=24 Identities=25% Similarity=0.117 Sum_probs=18.1
Q ss_pred CCceehhHHHHHHHHhhhcccccc
Q 029565 1 MARSWLIFLCLSFILLSANIEADA 24 (191)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (191)
|.|+.++.+.|+++++++++.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (235)
T PRK15137 1 MYRNLSIAAVLLSAAFSGPALAEG 24 (235)
T ss_pred CchhHHHHHHHHHHHhhhhhhhcC
Confidence 789988888888888877753333
No 165
>PHA02067 hypothetical protein
Probab=27.07 E-value=53 Score=27.13 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=15.4
Q ss_pred HHHHHHHHhhhccccccC-cCcccC
Q 029565 8 FLCLSFILLSANIEADAS-HCSIKG 31 (191)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~-~~~~~~ 31 (191)
|+++.+|+++++.|.+|| .|.+++
T Consensus 3 ~l~~iaLllaassA~AASFDCakAa 27 (221)
T PHA02067 3 FLSVIALGLLSSSAMAASFDCNTTG 27 (221)
T ss_pred hHHHHHHHhhcccccCCCCCccccC
Confidence 455555555666566666 999765
No 166
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=27.00 E-value=2.8e+02 Score=21.00 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=15.2
Q ss_pred CceecC-CcEEEEEEeCEEEEEE
Q 029565 81 PIHRHS-CEEIFIVLKGSGTLYL 102 (191)
Q Consensus 81 ~~H~H~-~eE~~~Vl~G~~~v~i 102 (191)
.+..|. .-.+-|+++|+=.+.+
T Consensus 62 ~~E~HrkyiDiq~~l~G~E~i~~ 84 (153)
T PF04074_consen 62 RFESHRKYIDIQYVLEGEERIGW 84 (153)
T ss_dssp -EEE-SSEEEEEEEEES-EEEEE
T ss_pred ceeeeccEEEEEeeccccEEEEE
Confidence 456777 7788899999887766
No 167
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=25.98 E-value=62 Score=19.11 Aligned_cols=13 Identities=15% Similarity=0.145 Sum_probs=6.1
Q ss_pred eehhHHHHHHHHh
Q 029565 4 SWLIFLCLSFILL 16 (191)
Q Consensus 4 ~~~~~~~~~~~~~ 16 (191)
|+|.+.++..||+
T Consensus 2 k~l~~a~~l~lLa 14 (36)
T PF08194_consen 2 KCLSLAFALLLLA 14 (36)
T ss_pred ceeHHHHHHHHHH
Confidence 4554544444444
No 168
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=25.91 E-value=98 Score=30.28 Aligned_cols=51 Identities=12% Similarity=0.161 Sum_probs=33.4
Q ss_pred EEEEECCCCcCCceecCCcEEEEEEeCEEEEEECC-eeeecCCCCCceeeecCCeEEE
Q 029565 70 WLQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLAS-SSHEKHPGKPQEHFFFANSTFH 126 (191)
Q Consensus 70 ~~~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~~-~~~~l~~gk~~d~~l~~GD~v~ 126 (191)
....++||...=.+-.+.+++++|.+|++++...+ +...+ ...+++||.+=
T Consensus 443 k~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~~~------~~~L~~Gd~~G 494 (727)
T KOG0498|consen 443 KPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGFFV------VAILGPGDFFG 494 (727)
T ss_pred hhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCceEE------EEEecCCCccc
Confidence 34446677665555566899999999999986544 11111 14788888754
No 169
>TIGR00022 uncharacterized protein, YhcH/YjgK/YiaL family. This family consists of conserved hypothetical proteins, about 150 amino acids in length. Members with limited information include YhcH, a possible sugar isomerase of sialic acid catabolism, and YjgK.
Probab=25.27 E-value=2.5e+02 Score=21.12 Aligned_cols=73 Identities=12% Similarity=0.166 Sum_probs=38.5
Q ss_pred CceecC-CcEEEEEEeCEEEEEECCeeeecCCCCCceeeecCCeEEEECCCCcEEEEeCCCCCcEEEEEEEeCCCceeee
Q 029565 81 PIHRHS-CEEIFIVLKGSGTLYLASSSHEKHPGKPQEHFFFANSTFHIPVNDAHQVWNTNENEDLQMLVVISRPPVKVFI 159 (191)
Q Consensus 81 ~~H~H~-~eE~~~Vl~G~~~v~i~~~~~~l~~gk~~d~~l~~GD~v~ip~g~~H~~~N~g~~e~~~~l~v~~~p~~~~~~ 159 (191)
.+..|. .-.+-|+++|+=.+.+......+... ++ --...|..++.. +. . ...+...+..+-++|
T Consensus 62 ~~E~Hr~YiDIq~~l~G~E~i~~~~~~~~~~~~--~~-y~~~~D~~f~~~---------~~--~-~~~i~l~~G~faiff 126 (142)
T TIGR00022 62 KAELHHRYLDIQLLLRGEENIEVGTTPPNLSVY--ED-YLEEDDIQLCAD---------ID--D-EQTVILKPGMFAVFY 126 (142)
T ss_pred chhhhhheEEEEEeecceEEEEEecCccccccc--cC-CCcCCCEEeccC---------CC--C-ceEEEeCCCcEEEEC
Confidence 456677 78899999999888774221111000 01 112345554421 11 1 122233456666778
Q ss_pred cCCCCCccc
Q 029565 160 YEDWSMPHT 168 (191)
Q Consensus 160 ~~~w~~~~~ 168 (191)
|.|+.+|.-
T Consensus 127 P~D~H~P~~ 135 (142)
T TIGR00022 127 PGEPHKPGC 135 (142)
T ss_pred CCCcccccc
Confidence 888888764
No 170
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=24.68 E-value=1.3e+02 Score=25.58 Aligned_cols=49 Identities=16% Similarity=-0.010 Sum_probs=30.7
Q ss_pred eeeecCCeEEEECCCCcEE-EEeCCCCCcEEEEE--EEeCCCceeeecCCCCC
Q 029565 116 EHFFFANSTFHIPVNDAHQ-VWNTNENEDLQMLV--VISRPPVKVFIYEDWSM 165 (191)
Q Consensus 116 d~~l~~GD~v~ip~g~~H~-~~N~g~~e~~~~l~--v~~~p~~~~~~~~~w~~ 165 (191)
...+++||++++-..+.|. ..|.++ ..-+... .+.++..+..-..+|..
T Consensus 210 ~~~lkaGd~~~f~~~t~HgS~~N~S~-~~~R~~~~~ry~~~~~~~~~~~~~~~ 261 (288)
T TIGR01762 210 PMQMKAGQFIIFWSTLMHASYPNSGE-SQMRMGFASRYVPSFVHVYPDSDHIE 261 (288)
T ss_pred eeeeCCceEEEECCCceecCCCCCCC-CceEEEEEEEEcCCCceEcCCCCccc
Confidence 3688999999999999997 577665 2334333 23445554333344443
No 171
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=24.57 E-value=44 Score=24.91 Aligned_cols=6 Identities=33% Similarity=1.304 Sum_probs=2.9
Q ss_pred ehhHHH
Q 029565 5 WLIFLC 10 (191)
Q Consensus 5 ~~~~~~ 10 (191)
|++|++
T Consensus 2 W~l~~i 7 (130)
T PF12273_consen 2 WVLFAI 7 (130)
T ss_pred eeeHHH
Confidence 555544
No 172
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=23.08 E-value=92 Score=25.54 Aligned_cols=37 Identities=27% Similarity=0.104 Sum_probs=28.4
Q ss_pred EEEEECCCCcC---CceecC-CcEEEEEEeCEEEEEECCee
Q 029565 70 WLQTFSPGTRT---PIHRHS-CEEIFIVLKGSGTLYLASSS 106 (191)
Q Consensus 70 ~~~~i~PG~~~---~~H~H~-~eE~~~Vl~G~~~v~i~~~~ 106 (191)
....+.||.++ |--+|. +.|-.+||-|++...-++..
T Consensus 153 ~~lkL~PGesitL~Pg~~HsFwae~g~vlvgEvSsvndD~h 193 (225)
T COG3822 153 SQLKLSPGESITLPPGLYHSFWAEEGGVLVGEVSSVNDDLH 193 (225)
T ss_pred eeEEECCCCcEecCCCceeeeeecCCcEEEEEEeeccCccc
Confidence 45678999875 346888 88888899999988776653
No 173
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=22.95 E-value=71 Score=24.06 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=16.5
Q ss_pred CCceehhHHHHHHHHhhhcc
Q 029565 1 MARSWLIFLCLSFILLSANI 20 (191)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (191)
|.|..||+.-|+..|++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (125)
T PLN03024 1 MSKRILIFSTVLVFLFSVSY 20 (125)
T ss_pred CceeeHHHHHHHHHHhhhhc
Confidence 78888999888888888773
No 174
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=22.90 E-value=2.3e+02 Score=26.51 Aligned_cols=37 Identities=24% Similarity=0.300 Sum_probs=27.0
Q ss_pred EEEEEECCCCcCCceecCCcEEEEEEeCEEEEEECCe
Q 029565 69 VWLQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLASS 105 (191)
Q Consensus 69 ~~~~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~~~ 105 (191)
+....+.||...-.----+.|+++|-+|.+.+..++.
T Consensus 330 lk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~dDg 366 (536)
T KOG0500|consen 330 LKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVADDG 366 (536)
T ss_pred hcceeeCCCCeEEecCcccceEEEEEccEEEEEecCC
Confidence 3445677776654444447899999999999988775
No 175
>PRK10386 curli assembly protein CsgE; Provisional
Probab=22.20 E-value=55 Score=24.95 Aligned_cols=30 Identities=17% Similarity=0.327 Sum_probs=16.2
Q ss_pred CCceehhHHHHHHHHhhhccccccCcCcccC
Q 029565 1 MARSWLIFLCLSFILLSANIEADASHCSIKG 31 (191)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (191)
|-|...+++|..+|++..+.+++ +.--..|
T Consensus 1 ~~r~~~~~l~~~~l~~~~~~~a~-~eiEi~G 30 (130)
T PRK10386 1 MKRYLRWIVAAELLFAAGNLHAA-VEVEVPG 30 (130)
T ss_pred ChhHHHHHHHHHHHHhCcccccc-ccccccc
Confidence 56666666666666666653332 4444444
No 176
>PRK10884 SH3 domain-containing protein; Provisional
Probab=22.14 E-value=71 Score=26.12 Aligned_cols=17 Identities=29% Similarity=0.208 Sum_probs=7.3
Q ss_pred CCceehhHHHHHHHHhh
Q 029565 1 MARSWLIFLCLSFILLS 17 (191)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (191)
|.+.+++++++++|.++
T Consensus 1 m~~~~~~~~~~l~l~~~ 17 (206)
T PRK10884 1 MPKLRLIGLTLLALSAT 17 (206)
T ss_pred CchhHHHHHHHHHHhhh
Confidence 55444444433333333
No 177
>PF13605 DUF4141: Domain of unknown function (DUF4141)
Probab=21.66 E-value=63 Score=20.89 Aligned_cols=15 Identities=27% Similarity=0.800 Sum_probs=8.9
Q ss_pred ceehhHHHHHHHHhh
Q 029565 3 RSWLIFLCLSFILLS 17 (191)
Q Consensus 3 ~~~~~~~~~~~~~~~ 17 (191)
|++++.+|+.++++.
T Consensus 1 kk~i~~~~~~~~~~~ 15 (55)
T PF13605_consen 1 KKKILMLCVACLLLA 15 (55)
T ss_pred CcchHHHHHHHHhcC
Confidence 456666666666433
No 178
>PF11587 Prion_bPrPp: Major prion protein bPrPp - N terminal; PDB: 1SKH_A.
Probab=21.40 E-value=63 Score=18.11 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=6.8
Q ss_pred CCceehhHH-HHHHHHh
Q 029565 1 MARSWLIFL-CLSFILL 16 (191)
Q Consensus 1 ~~~~~~~~~-~~~~~~~ 16 (191)
|+|+.+-|- +++|+.+
T Consensus 1 M~k~~lgcWilvLfvat 17 (29)
T PF11587_consen 1 MVKSHLGCWILVLFVAT 17 (29)
T ss_dssp --TTTTTTHHHHHHHHH
T ss_pred CccccccHHHHHHHHHH
Confidence 677666443 3444433
No 179
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=20.87 E-value=1.7e+02 Score=25.94 Aligned_cols=41 Identities=20% Similarity=0.256 Sum_probs=29.3
Q ss_pred CceeEEEEEEEECCCCcCCceecCCcEEEEEEeCEEEEEECC
Q 029565 63 GMKEIEVWLQTFSPGTRTPIHRHSCEEIFIVLKGSGTLYLAS 104 (191)
Q Consensus 63 g~~~~~~~~~~i~PG~~~~~H~H~~eE~~~Vl~G~~~v~i~~ 104 (191)
+..+|.+....++.|... ......-++++|++|++++.+++
T Consensus 332 p~~eF~l~~~~l~~g~~~-~~~~~~~~Illv~~G~~~i~~~~ 372 (373)
T PF01238_consen 332 PVDEFALSRIDLKKGESF-ILPLDGPSILLVTEGSATIIVSH 372 (373)
T ss_dssp SSSSEEEEEEECCTTEEE-EE-TTS-EEEEEEEEEEEEEETT
T ss_pred CCCeEEEEEEEECCCCeE-ECCCCCceEEEEeCCEEEEEeCC
Confidence 334788888888866543 23335788999999999999875
No 180
>PF03058 Sar8_2: Sar8.2 family; InterPro: IPR004297 Members of this family are found in Solanaceae spp. plants, a taxonomic group (family) that includes pepper and tobacco plant species. Synthesis of these proteins is induced by Tobacco mosaic virus and salicylic acid []; indeed they are thought to be involved in the development of systemic acquired resistance (SAR) after an initial hypersensitive response to microbial infection [, ]. SAR is characterised by long-lasting resistance to infection by a wide range of pathogens, extending to plant tissues distant from the initial infection site [].
Probab=20.34 E-value=44 Score=23.88 Aligned_cols=36 Identities=25% Similarity=0.403 Sum_probs=23.2
Q ss_pred CCceehhHHHHHH--HHhhhcc-ccccCcCcccCCCeeEe
Q 029565 1 MARSWLIFLCLSF--ILLSANI-EADASHCSIKGFPLVRN 37 (191)
Q Consensus 1 ~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~V~~ 37 (191)
|+-|--||+|+|. ||+--|+ +.++++ +++..|+...
T Consensus 1 M~~Ktnlfl~lSLailLmIISSqv~AREm-s~A~apit~~ 39 (93)
T PF03058_consen 1 MVSKTNLFLCLSLAILLMIISSQVDAREM-SKASAPITQT 39 (93)
T ss_pred CcchhhhHHHHHHHHHHHHHhhHHHHHHH-hcccchHHHH
Confidence 6667778888877 6666666 555555 6666555544
No 181
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=20.23 E-value=81 Score=23.96 Aligned_cols=25 Identities=16% Similarity=0.009 Sum_probs=18.5
Q ss_pred eeeecCCeEEEECCCCcEEE-EeCCC
Q 029565 116 EHFFFANSTFHIPVNDAHQV-WNTNE 140 (191)
Q Consensus 116 d~~l~~GD~v~ip~g~~H~~-~N~g~ 140 (191)
...+++||++++.+...|+- .|.++
T Consensus 181 ~~~~~~Gdvl~~~~~~~H~s~~N~s~ 206 (211)
T PF05721_consen 181 PVPMKAGDVLFFHSRLIHGSGPNTSD 206 (211)
T ss_dssp EE-BSTTEEEEEETTSEEEEE-B-SS
T ss_pred EeecCCCeEEEEcCCccccCCCCCCc
Confidence 35678999999999999976 55554
No 182
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=20.08 E-value=61 Score=16.19 Aligned_cols=9 Identities=22% Similarity=0.401 Sum_probs=3.8
Q ss_pred HHHHHHhhh
Q 029565 10 CLSFILLSA 18 (191)
Q Consensus 10 ~~~~~~~~~ 18 (191)
|++.|+.|+
T Consensus 8 lvvLLliSf 16 (19)
T PF13956_consen 8 LVVLLLISF 16 (19)
T ss_pred HHHHHhccc
Confidence 334444444
Done!