Query 029566
Match_columns 191
No_of_seqs 102 out of 426
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 14:58:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029566.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029566hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1792 Reticulon [Intracellul 100.0 1.1E-49 2.3E-54 328.8 20.3 188 1-188 38-229 (230)
2 PF02453 Reticulon: Reticulon; 100.0 2.2E-39 4.8E-44 254.9 -7.6 163 6-168 1-169 (169)
3 PF04842 DUF639: Plant protein 97.3 0.0058 1.3E-07 57.7 13.1 159 6-187 506-677 (683)
4 KOG1792 Reticulon [Intracellul 95.0 0.098 2.1E-06 43.7 7.1 79 97-175 41-142 (230)
5 PF08372 PRT_C: Plant phosphor 93.9 0.48 1E-05 37.3 8.3 66 85-150 71-136 (156)
6 PF06398 Pex24p: Integral pero 93.2 1.3 2.9E-05 38.8 10.9 21 5-25 31-51 (359)
7 PF08372 PRT_C: Plant phosphor 85.8 0.49 1.1E-05 37.2 1.8 25 3-27 82-106 (156)
8 PF01594 UPF0118: Domain of un 73.9 54 0.0012 27.7 12.7 59 117-175 130-189 (327)
9 PF10112 Halogen_Hydrol: 5-bro 71.2 38 0.00082 27.1 8.6 73 111-184 14-97 (199)
10 PF04842 DUF639: Plant protein 62.5 95 0.0021 30.1 10.4 56 93-152 500-555 (683)
11 PF02453 Reticulon: Reticulon; 60.9 3.1 6.7E-05 32.0 0.3 22 6-27 100-121 (169)
12 PF10256 Erf4: Golgin subfamil 59.9 65 0.0014 23.4 8.1 20 76-99 30-49 (118)
13 PF13677 MotB_plug: Membrane M 55.2 39 0.00086 21.8 4.8 33 119-155 17-49 (58)
14 KOG3488 Dolichol phosphate-man 53.3 34 0.00074 23.4 4.3 35 98-132 38-72 (81)
15 PF01484 Col_cuticle_N: Nemato 51.6 54 0.0012 20.1 6.2 34 138-171 15-51 (53)
16 KOG0058 Peptide exporter, ABC 46.8 2.2E+02 0.0047 27.9 10.1 79 79-171 253-331 (716)
17 PF10444 Nbl1_Borealin_N: Nbl1 44.7 41 0.00089 21.7 3.6 37 148-184 7-46 (59)
18 PRK11677 hypothetical protein; 44.4 1.2E+02 0.0026 23.2 6.6 8 151-158 48-55 (134)
19 PF13198 DUF4014: Protein of u 44.1 91 0.002 21.3 5.2 34 136-169 36-69 (72)
20 TIGR02872 spore_ytvI sporulati 43.2 2E+02 0.0044 24.2 14.1 6 168-173 196-201 (341)
21 PRK06433 NADH dehydrogenase su 39.6 63 0.0014 22.8 4.2 47 9-55 22-72 (88)
22 COG5038 Ca2+-dependent lipid-b 38.2 59 0.0013 33.4 5.1 79 18-102 158-236 (1227)
23 PF07234 DUF1426: Protein of u 36.5 81 0.0018 23.0 4.3 25 123-147 17-41 (117)
24 COG0053 MMT1 Predicted Co/Zn/C 32.0 3.3E+02 0.0072 23.4 12.0 115 41-156 85-209 (304)
25 KOG1726 HVA22/DP1 gene product 31.9 3E+02 0.0066 22.9 9.1 29 149-177 94-122 (225)
26 COG3404 Methenyl tetrahydrofol 31.5 1.7E+02 0.0036 24.1 5.8 39 132-170 35-77 (208)
27 PF11696 DUF3292: Protein of u 30.4 1.8E+02 0.004 28.0 6.8 52 73-124 85-140 (642)
28 PF06881 Elongin_A: RNA polyme 29.6 96 0.0021 22.4 3.9 33 143-175 64-96 (109)
29 PF04762 IKI3: IKI3 family; I 28.2 5.3E+02 0.012 26.0 9.9 117 38-170 792-925 (928)
30 PF05062 RICH: RICH domain; I 27.7 1.3E+02 0.0028 21.1 4.0 27 148-174 4-30 (82)
31 PF06055 ExoD: Exopolysacchari 26.7 3.3E+02 0.0073 21.7 9.2 38 63-100 70-111 (187)
32 PF03037 KMP11: Kinetoplastid 25.5 1.7E+02 0.0037 20.1 4.2 31 147-177 47-77 (90)
33 COG3887 Predicted signaling pr 25.1 6.3E+02 0.014 24.4 10.2 58 123-184 30-87 (655)
34 PF14800 DUF4481: Domain of un 25.1 4.2E+02 0.0092 23.2 7.5 31 142-172 109-139 (308)
35 PHA02677 hypothetical protein; 24.8 1.9E+02 0.0042 21.2 4.6 33 130-162 5-37 (108)
36 PRK10945 gene expression modul 24.4 64 0.0014 22.1 2.0 39 143-184 23-66 (72)
37 KOG1733 Mitochondrial import i 23.9 1.2E+02 0.0025 21.8 3.3 20 161-180 30-49 (97)
38 PTZ00443 Thioredoxin domain-co 23.5 3.4E+02 0.0074 22.3 6.6 28 78-105 151-178 (224)
39 PF06295 DUF1043: Protein of u 23.1 3.2E+02 0.007 20.3 6.3 16 134-149 6-21 (128)
40 PF01452 Rota_NSP4: Rotavirus 21.6 1.3E+02 0.0029 23.7 3.5 26 150-175 90-115 (173)
41 PF12548 DUF3740: Sulfatase pr 20.1 1.8E+02 0.0038 22.6 3.9 33 140-172 96-128 (145)
No 1
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-49 Score=328.76 Aligned_cols=188 Identities=40% Similarity=0.726 Sum_probs=181.9
Q ss_pred CCCCcccceeeccccchhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcc-CCC--CCC-ccee
Q 029566 1 MGGGRTADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNK-QLE--SLP-ELEV 76 (191)
Q Consensus 1 lgg~~v~DlllWrd~~~S~~vf~~~~~~~~l~~~~~~s~isvv~~~~l~~l~~~fl~~~~~~~~~~-~~~--~~p-~~~i 76 (191)
+|||+++|+++|||+|.||.++++++++|++|+..+|+.++++|+++++.+.+.|.|.+...+++| ++| ..| ++++
T Consensus 38 lg~~~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~i 117 (230)
T KOG1792|consen 38 LGGGKVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVTFLNKKSEPGAYLPVEITI 117 (230)
T ss_pred CCCCchhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCceeec
Confidence 689999999999999999999999999999999999999999999999999999999988887777 666 678 9999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhchHHHH
Q 029566 77 SEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVD 156 (191)
Q Consensus 77 s~e~~~~~a~~~~~~~n~~l~~lr~l~~~~d~~~slk~~~~L~~ls~vg~~~s~~tLl~~~~v~~fTlP~~Ye~~q~~ID 156 (191)
|||.+++.+++++.++|+.+.++|++++|+|+.+++|+++.||++|++|+|||++|++|+|++++||+|++||+|||+||
T Consensus 118 pee~~~~~a~~~~~~in~~l~~l~~ia~~~d~~~~lk~~v~lw~lS~vGs~fn~lTll~ig~v~~~TvP~~YEky~d~ID 197 (230)
T KOG1792|consen 118 PEEFVLALASSLRVEINQALSELRDIALGRDLKDFLKVAVGLWILSYVGSLFNFLTLLYIGLVLLFTVPVLYEKYEDQID 197 (230)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchhHHhHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcc
Q 029566 157 RYCGMIHKSISQHYKVVDENVISRIPRTLSKD 188 (191)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~kv~~kip~~~~~~ 188 (191)
+++++++++.+++|+++|+|+++|||+++.++
T Consensus 198 ~~~~~~~~~~k~~~~~~~~k~l~kip~~~~~~ 229 (230)
T KOG1792|consen 198 PYLGKVMEELKKHYRKFDEKVLSKIPAGPRKK 229 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCccccC
Confidence 99999999999999999999999999988764
No 2
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=100.00 E-value=2.2e-39 Score=254.90 Aligned_cols=163 Identities=31% Similarity=0.515 Sum_probs=46.8
Q ss_pred ccceeeccccchhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccCC------CCCCcceecHH
Q 029566 6 TADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNKQL------ESLPELEVSEE 79 (191)
Q Consensus 6 v~DlllWrd~~~S~~vf~~~~~~~~l~~~~~~s~isvv~~~~l~~l~~~fl~~~~~~~~~~~~------~~~p~~~is~e 79 (191)
|+|+++||||++||.+|++++++|++++++++|++|++|+++++.+++.+++....+.+++.+ ++.++.++|||
T Consensus 1 V~dll~W~~~~~S~~v~~~~~~~~~l~~~~~~s~is~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF02453_consen 1 VADLLLWRDPKKSGIVFGAILLFWLLFWLFNYSLISLVSYILLLLLAISFLYRLLSKVLSRSPKGPFKEPLDYDLEISEE 80 (169)
T ss_dssp ----------------------------------------------------THCCCTCCHHHHCTTHHHHCHHHHHCCH
T ss_pred CceeeEecCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccCCccccccccHH
Confidence 689999999999999999999999999999999999999999999888888877766666644 33347899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhchHHHHHHH
Q 029566 80 MVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYC 159 (191)
Q Consensus 80 ~~~~~a~~~~~~~n~~l~~lr~l~~~~d~~~slk~~~~L~~ls~vg~~~s~~tLl~~~~v~~fTlP~~Ye~~q~~ID~~~ 159 (191)
+++++++.+++.+|..++.+|+++.+||+..|+++++++|+++++|+++|++|+++++++++||+|.+||+||++||+++
T Consensus 81 ~~~~~~~~~~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~~~~~Id~~~ 160 (169)
T PF02453_consen 81 RVERLADSVAEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEKYQEEIDQYV 160 (169)
T ss_dssp HHHHHHHHCCCCCCHHHHHHHCCCHCT-TTGGG-----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 029566 160 GMIHKSISQ 168 (191)
Q Consensus 160 ~~~~~~~~~ 168 (191)
+++++++||
T Consensus 161 ~~~~~~~~k 169 (169)
T PF02453_consen 161 AKVKEKVKK 169 (169)
T ss_dssp ---------
T ss_pred HHHHHHhcC
Confidence 999998875
No 3
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=97.29 E-value=0.0058 Score=57.70 Aligned_cols=159 Identities=11% Similarity=0.118 Sum_probs=101.1
Q ss_pred ccceeeccccchhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHHHHhcc---------CCCCCC-
Q 029566 6 TADVLLWKRRRVSFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLI---VLMFFRANFAAFRNK---------QLESLP- 72 (191)
Q Consensus 6 v~DlllWrd~~~S~~vf~~~~~~~~l~~~~~~s~isvv~~~~l~~l---~~~fl~~~~~~~~~~---------~~~~~p- 72 (191)
+-++..|+||.+|...++.... ..+. ..+.|++-..+ ++..+|....+..++ +|+.+.
T Consensus 506 ~~~l~~We~P~kt~~Fl~~~~~--iI~r-------~wl~Y~~p~~Ll~~a~~Ml~~r~~~~~g~~~~~v~V~~pP~~nTv 576 (683)
T PF04842_consen 506 LQKLASWEEPLKTLVFLALFLY--IIYR-------GWLGYIFPAFLLFSAVFMLWLRYQGRLGKSFGEVTVRDPPPKNTV 576 (683)
T ss_pred HHHHhhccCcchhHHHHHHHHH--HHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhccCCccceEEecCCCCccHH
Confidence 4578899999999554443333 2221 23344333222 233355333212222 111111
Q ss_pred cceecHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhch
Q 029566 73 ELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFE 152 (191)
Q Consensus 73 ~~~is~e~~~~~a~~~~~~~n~~l~~lr~l~~~~d~~~slk~~~~L~~ls~vg~~~s~~tLl~~~~v~~fTlP~~Ye~~q 152 (191)
+-.+.-......++......|-++-++|.|++...+..+-++++.|..++.+-..+-+--++.+.++-.||-..=+.+-
T Consensus 577 EqilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~Ll~~A~~LavvP~kyil~~v~l~~FTre~~~Rr~- 655 (683)
T PF04842_consen 577 EQILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALALLGLAAVLAVVPFKYILLFVFLEVFTRESPFRRE- 655 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchh-
Confidence 3334445555667777888999999999999999999999999999999999999999999999999999864432211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCc
Q 029566 153 ARVDRYCGMIHKSISQHYKVVDENVISRIPRTLSK 187 (191)
Q Consensus 153 ~~ID~~~~~~~~~~~~~~~~~~~kv~~kip~~~~~ 187 (191)
-.++..+++++-+ ..||-+|..
T Consensus 656 -----s~er~~RRlrEWW--------~sIPAaPV~ 677 (683)
T PF04842_consen 656 -----SSERFNRRLREWW--------DSIPAAPVQ 677 (683)
T ss_pred -----hHHHHHHHHHHHH--------hhCCccceE
Confidence 1234445555554 467877653
No 4
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.04 E-value=0.098 Score=43.68 Aligned_cols=79 Identities=15% Similarity=0.140 Sum_probs=66.2
Q ss_pred HHHhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhc-----------------------hH
Q 029566 97 LMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRF-----------------------EA 153 (191)
Q Consensus 97 ~~lr~l~~~~d~~~slk~~~~L~~ls~vg~~~s~~tLl~~~~v~~fTlP~~Ye~~-----------------------q~ 153 (191)
.+..|+++|+|.+.++.+.++..++-.+-..++..++...+.+++++++..|.++ |+
T Consensus 41 ~~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~ipee 120 (230)
T KOG1792|consen 41 GKVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVTFLNKKSEPGAYLPVEITIPEE 120 (230)
T ss_pred CchhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCceeecCHH
Confidence 3678999999999999999999888888888888888888888888877777665 56
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 029566 154 RVDRYCGMIHKSISQHYKVVDE 175 (191)
Q Consensus 154 ~ID~~~~~~~~~~~~~~~~~~~ 175 (191)
.++++.+.++.++|...++.++
T Consensus 121 ~~~~~a~~~~~~in~~l~~l~~ 142 (230)
T KOG1792|consen 121 FVLALASSLRVEINQALSELRD 142 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888888777664
No 5
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=93.92 E-value=0.48 Score=37.27 Aligned_cols=66 Identities=12% Similarity=0.067 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhh
Q 029566 85 AASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSR 150 (191)
Q Consensus 85 a~~~~~~~n~~l~~lr~l~~~~d~~~slk~~~~L~~ls~vg~~~s~~tLl~~~~v~~fTlP~~Ye~ 150 (191)
++.+...+....++++.++.++|+..|..+++++++.+.+-.+..+..++.+..+-.++=|++-..
T Consensus 71 vQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~ 136 (156)
T PF08372_consen 71 VQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNP 136 (156)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCC
Confidence 344445566678999999999999999999999988888877777777777777777777776553
No 6
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=93.21 E-value=1.3 Score=38.79 Aligned_cols=21 Identities=14% Similarity=0.469 Sum_probs=15.2
Q ss_pred cccceeeccccchhHHHHHHH
Q 029566 5 RTADVLLWKRRRVSFGVIVVA 25 (191)
Q Consensus 5 ~v~DlllWrd~~~S~~vf~~~ 25 (191)
.+.++++|+||..|-..+...
T Consensus 31 ~vl~il~W~~p~~t~~~L~l~ 51 (359)
T PF06398_consen 31 RVLRILTWTNPDYTLSFLLLY 51 (359)
T ss_pred HHHHeEEeCCCCcchHHHHHH
Confidence 467899999999885544333
No 7
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=85.84 E-value=0.49 Score=37.23 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=19.8
Q ss_pred CCcccceeeccccchhHHHHHHHHH
Q 029566 3 GGRTADVLLWKRRRVSFGVIVVATV 27 (191)
Q Consensus 3 g~~v~DlllWrd~~~S~~vf~~~~~ 27 (191)
|+++..++.||||..|+....++.+
T Consensus 82 gERl~allsWrdP~aT~lf~~~clv 106 (156)
T PF08372_consen 82 GERLQALLSWRDPRATALFVVFCLV 106 (156)
T ss_pred HHHHHHhhccCCccHHHHHHHHHHH
Confidence 5678899999999999776655444
No 8
>PF01594 UPF0118: Domain of unknown function DUF20; InterPro: IPR002549 This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases. It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution.
Probab=73.90 E-value=54 Score=27.75 Aligned_cols=59 Identities=17% Similarity=0.086 Sum_probs=28.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHH-HHHHHHHHHHHHH
Q 029566 117 YLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMI-HKSISQHYKVVDE 175 (191)
Q Consensus 117 ~L~~ls~vg~~~s~~tLl~~~~v~~fTlP~~Ye~~q~~ID~~~~~~-~~~~~~~~~~~~~ 175 (191)
.-++.+..++..+...=+.+..+..|-.=.=.++.++.+.+++..- +++.++..+++++
T Consensus 130 ~~~~~~~~~~~~~~l~~~~i~l~~~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 189 (327)
T PF01594_consen 130 LSSLSSFISSIFSFLFNFFIFLIFLFFFLLDGEKLRRFLIRLLPPRNRERFEEILRKIDQ 189 (327)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccchhhHHHHHHHHHHHH
Confidence 3445555555554444444444444444444444555555544433 4555555555443
No 9
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=71.15 E-value=38 Score=27.10 Aligned_cols=73 Identities=22% Similarity=0.226 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhchHHH-----------HHHHHHHHHHHHHHHHHHHHHHHh
Q 029566 111 FFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARV-----------DRYCGMIHKSISQHYKVVDENVIS 179 (191)
Q Consensus 111 slk~~~~L~~ls~vg~~~s~~tLl~~~~v~~fTlP~~Ye~~q~~I-----------D~~~~~~~~~~~~~~~~~~~kv~~ 179 (191)
..-+++..|++++.|.-.+++--+.+|.++.+.+.....+.+..- .++++...++.+++.+.++ +...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~k~~~~~gls~~e~~~~~~~l~ea~~~i~~i~-~~~~ 92 (199)
T PF10112_consen 14 GVLIAAITFLVSFFGFDHSFLLSLLIGAVAFAVVYLFGKRRQRRKFLKEAGLSDREYEYIREILEEAKEKIRRIE-KAIK 92 (199)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcccccchhHhhhcCCChhHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 334555666677766555666655666666655554444332221 1234444444444444443 3345
Q ss_pred hCCCC
Q 029566 180 RIPRT 184 (191)
Q Consensus 180 kip~~ 184 (191)
++++.
T Consensus 93 ~i~~~ 97 (199)
T PF10112_consen 93 RIRDL 97 (199)
T ss_pred HcCCH
Confidence 66654
No 10
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=62.47 E-value=95 Score=30.08 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=33.6
Q ss_pred HHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhch
Q 029566 93 NYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFE 152 (191)
Q Consensus 93 n~~l~~lr~l~~~~d~~~slk~~~~L~~ls~vg~~~s~~tLl~~~~v~~fTlP~~Ye~~q 152 (191)
.....+++++..||||..|+-++++.+.+-|-| |+ .-.+-.+.+...+-+++.+|+
T Consensus 500 ~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~-wl---~Y~~p~~Ll~~a~~Ml~~r~~ 555 (683)
T PF04842_consen 500 IEIAKWLQKLASWEEPLKTLVFLALFLYIIYRG-WL---GYIFPAFLLFSAVFMLWLRYQ 555 (683)
T ss_pred HHHHHHHHHHhhccCcchhHHHHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHhh
Confidence 445679999999999999998877544433321 11 222233333444445556666
No 11
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=60.91 E-value=3.1 Score=31.97 Aligned_cols=22 Identities=18% Similarity=0.224 Sum_probs=11.2
Q ss_pred ccceeeccccchhHHHHHHHHH
Q 029566 6 TADVLLWKRRRVSFGVIVVATV 27 (191)
Q Consensus 6 v~DlllWrd~~~S~~vf~~~~~ 27 (191)
..+++.|+|++.|..++.++.+
T Consensus 100 ~~~l~~~~~~~~~l~~~~~l~~ 121 (169)
T PF02453_consen 100 LRRLVFGEDPKKSLKVFVVLYI 121 (169)
T ss_dssp HHCCCHCT-TTGGG--------
T ss_pred HHHHHcCccHHHHHHHHHHHHH
Confidence 4588999999999776655444
No 12
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=59.91 E-value=65 Score=23.45 Aligned_cols=20 Identities=30% Similarity=0.265 Sum_probs=13.2
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHHH
Q 029566 76 VSEEMVNNAAASFRVKINYLLLMA 99 (191)
Q Consensus 76 is~e~~~~~a~~~~~~~n~~l~~l 99 (191)
||+++.++.. ..+|..+.+.
T Consensus 30 is~~ef~~iI----~~IN~~l~~a 49 (118)
T PF10256_consen 30 ISPEEFEEII----NTINQILKEA 49 (118)
T ss_pred CCHHHHHHHH----HHHHHHHHHH
Confidence 8888776544 4577776544
No 13
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=55.19 E-value=39 Score=21.80 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=23.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhchHHH
Q 029566 119 WLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARV 155 (191)
Q Consensus 119 ~~ls~vg~~~s~~tLl~~~~v~~fTlP~~Ye~~q~~I 155 (191)
|.++|- ++.||+..-|++++++-.+=+...+++
T Consensus 17 Wlvtya----DlmTLLl~fFVlL~s~s~~d~~k~~~~ 49 (58)
T PF13677_consen 17 WLVTYA----DLMTLLLAFFVLLFSMSSVDKEKFEEV 49 (58)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 555544 888999999999988876655444433
No 14
>KOG3488 consensus Dolichol phosphate-mannose regulatory protein (DPM2) [Posttranslational modification, protein turnover, chaperones]
Probab=53.31 E-value=34 Score=23.41 Aligned_cols=35 Identities=26% Similarity=0.525 Sum_probs=29.4
Q ss_pred HHhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHH
Q 029566 98 MAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFT 132 (191)
Q Consensus 98 ~lr~l~~~~d~~~slk~~~~L~~ls~vg~~~s~~t 132 (191)
..++.++-+++....-++++++.+..+|-++|...
T Consensus 38 iihKyFLpr~yAi~iPvaagl~ll~lig~Fis~vM 72 (81)
T KOG3488|consen 38 IIHKYFLPREYAITIPVAAGLFLLCLIGTFISLVM 72 (81)
T ss_pred HHHHHhcChhHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 45677888999999999999999999998877654
No 15
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=51.62 E-value=54 Score=20.05 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=21.2
Q ss_pred HHHHHhhhHHHhh---chHHHHHHHHHHHHHHHHHHH
Q 029566 138 TLLSITVPALYSR---FEARVDRYCGMIHKSISQHYK 171 (191)
Q Consensus 138 ~v~~fTlP~~Ye~---~q~~ID~~~~~~~~~~~~~~~ 171 (191)
+.+++++|.+|.. -|++++.-.+..+...++.++
T Consensus 15 ~~~l~~~p~i~~~i~~~~~~~~~em~~fk~~s~d~W~ 51 (53)
T PF01484_consen 15 LSCLITVPSIYNDIQNFQSELDDEMEEFKEISDDAWN 51 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467899999964 344555555566665555543
No 16
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.75 E-value=2.2e+02 Score=27.90 Aligned_cols=79 Identities=9% Similarity=0.032 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHhhchHHHHHH
Q 029566 79 EMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRY 158 (191)
Q Consensus 79 e~~~~~a~~~~~~~n~~l~~lr~l~~~~d~~~slk~~~~L~~ls~vg~~~s~~tLl~~~~v~~fTlP~~Ye~~q~~ID~~ 158 (191)
++...+.+++...+|..+...-..+- -.+.++. .|| ....+..+.+-..+.++++|-+|.+.+-+.
T Consensus 253 sD~~~vs~svs~nls~~lR~~~~~~g---------~~~~M~~----~S~-~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~ 318 (716)
T KOG0058|consen 253 SDTQIVSNSVSQNLSDGLRNLVQGFG---------GLGFMFS----LSW-RLTLVTLIVVPIVALVAKIYGKYLRKLSKQ 318 (716)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH---------hHHHHhh----hhH-HHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777643322221 1222222 233 344455666667778889999999888888
Q ss_pred HHHHHHHHHHHHH
Q 029566 159 CGMIHKSISQHYK 171 (191)
Q Consensus 159 ~~~~~~~~~~~~~ 171 (191)
.+.+.++.++.-+
T Consensus 319 ~Q~a~A~a~~vae 331 (716)
T KOG0058|consen 319 TQDALARANQVAE 331 (716)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777666543
No 17
>PF10444 Nbl1_Borealin_N: Nbl1 / Borealin N terminal; InterPro: IPR018851 This entry represents the N-terminal domain of borealin, and is also found in the N-terminal-Borealin-like (NBL; YHR199C-A) protein from Saccharomyces cerevisiae (Baker's yeast). NBL is a subunit of the conserved chromosomal passenger complex (CPC; Ipl1p-Sli15p-Bir1p-Nbl1p), which regulates mitotic chromosome segregation. It is not required for the kinase activity of the complex and it mediates the interaction of Sli15p and Bir1p [].; PDB: 2RAW_B 2RAX_Y 2QFA_B.
Probab=44.73 E-value=41 Score=21.71 Aligned_cols=37 Identities=14% Similarity=0.336 Sum_probs=27.0
Q ss_pred HhhchHHHHHHHHHHHHHHHHHHHHHHHHH---HhhCCCC
Q 029566 148 YSRFEARVDRYCGMIHKSISQHYKVVDENV---ISRIPRT 184 (191)
Q Consensus 148 Ye~~q~~ID~~~~~~~~~~~~~~~~~~~kv---~~kip~~ 184 (191)
-+.++.+++..++..+.+.+.+.+.++... +.+||++
T Consensus 7 l~~fd~Ev~~r~~~lr~~~~~~~~~~~~~~~~~l~riP~~ 46 (59)
T PF10444_consen 7 LQNFDLEVEERIRRLRAQYENLLQSLRNRLEMELLRIPKA 46 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 356677888888888888888777776554 6789975
No 18
>PRK11677 hypothetical protein; Provisional
Probab=44.43 E-value=1.2e+02 Score=23.22 Aligned_cols=8 Identities=0% Similarity=0.094 Sum_probs=3.0
Q ss_pred chHHHHHH
Q 029566 151 FEARVDRY 158 (191)
Q Consensus 151 ~q~~ID~~ 158 (191)
||.++..+
T Consensus 48 YkqeV~~H 55 (134)
T PRK11677 48 YRQELVSH 55 (134)
T ss_pred HHHHHHHH
Confidence 33333333
No 19
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=44.13 E-value=91 Score=21.29 Aligned_cols=34 Identities=9% Similarity=0.150 Sum_probs=18.4
Q ss_pred HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHHHH
Q 029566 136 IGTLLSITVPALYSRFEARVDRYCGMIHKSISQH 169 (191)
Q Consensus 136 ~~~v~~fTlP~~Ye~~q~~ID~~~~~~~~~~~~~ 169 (191)
+...+..++-.+.|+|.+.+-...++..++++.+
T Consensus 36 ~~~~i~~~~E~l~e~Y~~~~w~~F~~Lhnkinpy 69 (72)
T PF13198_consen 36 FVWIIGKIIEPLFELYKDWFWNPFNALHNKINPY 69 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhcccccc
Confidence 3344445666666666666555555555554433
No 20
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein.
Probab=43.17 E-value=2e+02 Score=24.24 Aligned_cols=6 Identities=0% Similarity=0.202 Sum_probs=2.2
Q ss_pred HHHHHH
Q 029566 168 QHYKVV 173 (191)
Q Consensus 168 ~~~~~~ 173 (191)
+..+++
T Consensus 196 ~i~~~i 201 (341)
T TIGR02872 196 NIFSEL 201 (341)
T ss_pred HHHHHH
Confidence 333333
No 21
>PRK06433 NADH dehydrogenase subunit J; Provisional
Probab=39.57 E-value=63 Score=22.79 Aligned_cols=47 Identities=23% Similarity=0.219 Sum_probs=25.8
Q ss_pred eeeccccchhHHHHHHHHHHH-HHHHhcCCchhHHHH---HHHHHHHHHHH
Q 029566 9 VLLWKRRRVSFGVIVVATVAW-LIFERSGLPFLSVCS---DVLLLLIVLMF 55 (191)
Q Consensus 9 lllWrd~~~S~~vf~~~~~~~-~l~~~~~~s~isvv~---~~~l~~l~~~f 55 (191)
++.+||+-.|+..+......- .++...+.+++.+.- |.+.+..+..|
T Consensus 22 vv~~kn~v~svl~l~~~~~~~a~l~~lL~a~fvA~~qi~VYaGai~vLflF 72 (88)
T PRK06433 22 VVLSRDVWHSALYLGVALFSVAVLYVMLNAEFLAAVQVLVYVGAVLILITF 72 (88)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 467889988876555333221 244456777765544 34444444444
No 22
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=38.15 E-value=59 Score=33.37 Aligned_cols=79 Identities=23% Similarity=0.345 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcceecHHHHHHHHHHHHHHHHHHHH
Q 029566 18 SFGVIVVATVAWLIFERSGLPFLSVCSDVLLLLIVLMFFRANFAAFRNKQLESLPELEVSEEMVNNAAASFRVKINYLLL 97 (191)
Q Consensus 18 S~~vf~~~~~~~~l~~~~~~s~isvv~~~~l~~l~~~fl~~~~~~~~~~~~~~~p~~~is~e~~~~~a~~~~~~~n~~l~ 97 (191)
++++|++..+.|+ |...++++.++ . ++.+...++|+.-...++|+-+..-.-+.++|...+-.++ ++++|.+++
T Consensus 158 ~~i~l~~~v~Swi-fg~~~fs~~sl---f-fii~~~~~vY~~~~~rv~rnird~v~~~~~~ek~~nd~ES-veWLNtfL~ 231 (1227)
T COG5038 158 VAIVLIGSVASWI-FGYLGFSFASL---F-FIILVTMYVYRTCIKRVRRNIRDLVQQELSEEKLENDYES-VEWLNTFLQ 231 (1227)
T ss_pred hhHHHHHHHHHHH-HHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhH-HHHHHHHHH
Confidence 4566666666543 33333433332 2 2333455678766555555433222224455555555544 567788877
Q ss_pred HHhhh
Q 029566 98 MAHDI 102 (191)
Q Consensus 98 ~lr~l 102 (191)
++=.|
T Consensus 232 KfW~i 236 (1227)
T COG5038 232 KFWPI 236 (1227)
T ss_pred hheec
Confidence 65444
No 23
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=36.47 E-value=81 Score=23.02 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=20.9
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhhHH
Q 029566 123 AIGSYFSFFTLAYIGTLLSITVPAL 147 (191)
Q Consensus 123 ~vg~~~s~~tLl~~~~v~~fTlP~~ 147 (191)
++|..|-.-|++|+-..++|-+|+-
T Consensus 17 F~~AIFiAItIlYILLalL~EvPkY 41 (117)
T PF07234_consen 17 FFGAIFIAITILYILLALLFEVPKY 41 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3566777779999999999999973
No 24
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=32.04 E-value=3.3e+02 Score=23.42 Aligned_cols=115 Identities=17% Similarity=0.118 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcc--------eecHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHH
Q 029566 41 SVCSDVLLLLIVLMFFRANFAAFRNKQLESLPEL--------EVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFF 112 (191)
Q Consensus 41 svv~~~~l~~l~~~fl~~~~~~~~~~~~~~~p~~--------~is~e~~~~~a~~~~~~~n~~l~~lr~l~~~~d~~~sl 112 (191)
+++.-+.++...+..+|..+.+.++..+++.|.. .+..+.+.+....+....|.-.-.....=.--|...|+
T Consensus 85 sl~~~~~i~~~g~~i~~~a~~~~~~~~~~~~~~~~~~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~ts~ 164 (304)
T COG0053 85 SLIVSILIFAAGFEILLEAIKRLISPQPVEPPLLALGVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLTSL 164 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHH
Confidence 3333333333333446777777766444444311 23445555555555555555433322222223777777
Q ss_pred HHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHhh-hHHHhhchHHHH
Q 029566 113 QVVAYLWLLSAIG-SYFSFFTLAYIGTLLSITV-PALYSRFEARVD 156 (191)
Q Consensus 113 k~~~~L~~ls~vg-~~~s~~tLl~~~~v~~fTl-P~~Ye~~q~~ID 156 (191)
-+++++- ....| .|++...=+.+++..+.+. =.++|.-++.+|
T Consensus 165 ~~lvgl~-~~~~g~~~lD~i~a~~I~~~Il~~~~~~~~~s~~~L~d 209 (304)
T COG0053 165 AVLVGLL-GSLLGWPWLDPLAALLISLYILKTGFRLFKESVNELMD 209 (304)
T ss_pred HHHHHHH-HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7777776 66777 5565555555555444443 344555555555
No 25
>KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms]
Probab=31.88 E-value=3e+02 Score=22.95 Aligned_cols=29 Identities=14% Similarity=0.142 Sum_probs=21.0
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029566 149 SRFEARVDRYCGMIHKSISQHYKVVDENV 177 (191)
Q Consensus 149 e~~q~~ID~~~~~~~~~~~~~~~~~~~kv 177 (191)
.++|++||+.+..++++.-++...+-.|.
T Consensus 94 s~~E~eid~~l~~~k~~~~~~a~~~~~r~ 122 (225)
T KOG1726|consen 94 SKHEEEIDRMLVEAKERVYDAAVSILKRA 122 (225)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999988888776655544433
No 26
>COG3404 Methenyl tetrahydrofolate cyclohydrolase [Amino acid transport and metabolism]
Probab=31.52 E-value=1.7e+02 Score=24.12 Aligned_cols=39 Identities=10% Similarity=0.134 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhhhHH-HhhchHHHHHHHH---HHHHHHHHHH
Q 029566 132 TLAYIGTLLSITVPAL-YSRFEARVDRYCG---MIHKSISQHY 170 (191)
Q Consensus 132 tLl~~~~v~~fTlP~~-Ye~~q~~ID~~~~---~~~~~~~~~~ 170 (191)
....++.++-||.-+= |+.|+++++..++ +++.++....
T Consensus 35 g~~L~~MV~~lt~gKk~Y~~~d~e~k~i~~~~~~ik~~l~~li 77 (208)
T COG3404 35 GCALASMVANLTRGKKGYEDYDDEMKEILEELQKIKAELLALI 77 (208)
T ss_pred HHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4556677788888776 9999999998755 4444444433
No 27
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=30.40 E-value=1.8e+02 Score=28.04 Aligned_cols=52 Identities=10% Similarity=0.059 Sum_probs=34.3
Q ss_pred cceecHHHHHHHHHH----HHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHH
Q 029566 73 ELEVSEEMVNNAAAS----FRVKINYLLLMAHDITVGKDFRLFFQVVAYLWLLSAI 124 (191)
Q Consensus 73 ~~~is~e~~~~~a~~----~~~~~n~~l~~lr~l~~~~d~~~slk~~~~L~~ls~v 124 (191)
+-+.|.+......++ +..-+-.+...+.||-+|+++..+.-++++.++..++
T Consensus 85 ~e~FspdkLRa~lERlY~tv~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~aW~~ 140 (642)
T PF11696_consen 85 DEEFSPDKLRANLERLYMTVVVGLAAFIKHIARLRSWREPRRTAAFCAVYFIAWLL 140 (642)
T ss_pred cccCChHHHHHHhHhheeehHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHH
Confidence 335566655555554 4445566778889999999999988776654444433
No 28
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=29.59 E-value=96 Score=22.38 Aligned_cols=33 Identities=9% Similarity=0.205 Sum_probs=28.6
Q ss_pred hhhHHHhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 029566 143 TVPALYSRFEARVDRYCGMIHKSISQHYKVVDE 175 (191)
Q Consensus 143 TlP~~Ye~~q~~ID~~~~~~~~~~~~~~~~~~~ 175 (191)
+.=.+|.+|+++-|+......+++++.++..++
T Consensus 64 ~Wr~~Y~~~~~e~e~~~~~~~~~L~~~~~~~~~ 96 (109)
T PF06881_consen 64 SWRELYEKLKKEREEKLKEATERLRKKIKKLQQ 96 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666799999999999999999999988887653
No 29
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=28.18 E-value=5.3e+02 Score=26.01 Aligned_cols=117 Identities=15% Similarity=0.195 Sum_probs=72.2
Q ss_pred chhHHHHHHHHHHHH-----HHHHHHHHHHHhccCCCCCCcceecHHHHHHHHHHHHH-HHHHHHHHHhhhhcccchHHH
Q 029566 38 PFLSVCSDVLLLLIV-----LMFFRANFAAFRNKQLESLPELEVSEEMVNNAAASFRV-KINYLLLMAHDITVGKDFRLF 111 (191)
Q Consensus 38 s~isvv~~~~l~~l~-----~~fl~~~~~~~~~~~~~~~p~~~is~e~~~~~a~~~~~-~~n~~l~~lr~l~~~~d~~~s 111 (191)
+=++-+|.+..-+|. .-|+...+.....++||.. |+.. +....+.. .-..+-+.++.+++--|...-
T Consensus 792 ~KVn~ICdair~~l~~~~~~~~~l~~IlTa~vkk~Pp~l------e~aL-~~I~~l~~~~~~~ae~alkyl~fLvDvn~L 864 (928)
T PF04762_consen 792 SKVNKICDAIRKALEKPKDKDKYLQPILTAYVKKSPPDL------EEAL-QLIKELREEDPESAEEALKYLCFLVDVNKL 864 (928)
T ss_pred cHHHHHHHHHHHHhcccccchhhHHHHHHHHHhcCchhH------HHHH-HHHHHHHhcChHHHHHHHhHheeeccHHHH
Confidence 346788888888773 3567777777777776544 3333 33333332 223455667777777788888
Q ss_pred HHHHHHHHHHHHH---hh--------hhHHHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHHHHH
Q 029566 112 FQVVAYLWLLSAI---GS--------YFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHY 170 (191)
Q Consensus 112 lk~~~~L~~ls~v---g~--------~~s~~tLl~~~~v~~fTlP~~Ye~~q~~ID~~~~~~~~~~~~~~ 170 (191)
..++.++|=+... .. ++-|+ =-+--+|..|.+|+ ||.+++.....++++.
T Consensus 865 y~~ALG~YDl~Lal~VAq~SQkDPKEYLPfL-------~~L~~l~~~~rry~--ID~hLkRy~kAL~~L~ 925 (928)
T PF04762_consen 865 YDVALGTYDLELALMVAQQSQKDPKEYLPFL-------QELQKLPPLYRRYK--IDDHLKRYEKALRHLS 925 (928)
T ss_pred HHHHhhhcCHHHHHHHHHHhccChHHHHHHH-------HHHHhCChhheeee--HhhhhCCHHHHHHHHH
Confidence 8888888743321 10 11111 12446888998887 9999887777666653
No 30
>PF05062 RICH: RICH domain; InterPro: IPR007756 This domain is about 85 residues in length and very rich in charged residues, hence the name RICH (Rich In CHarged residues). It is found in secreted proteins such as PspC Q9KK19 from SWISSPROT, SpsA O33742 from SWISSPROT and IgA FC receptor P27951 from SWISSPROT from Streptococcus agalactiae. This domain could be involved in bacterial adherence or cell wall binding.
Probab=27.67 E-value=1.3e+02 Score=21.15 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=21.2
Q ss_pred HhhchHHHHHHHHHHHHHHHHHHHHHH
Q 029566 148 YSRFEARVDRYCGMIHKSISQHYKVVD 174 (191)
Q Consensus 148 Ye~~q~~ID~~~~~~~~~~~~~~~~~~ 174 (191)
.+++.+++|.|+++.-..++++.++-+
T Consensus 4 ~~Ka~~~V~~y~~kiL~ei~~~L~k~k 30 (82)
T PF05062_consen 4 RKKAKDEVDEYMEKILSEIKKQLDKRK 30 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999988876665533
No 31
>PF06055 ExoD: Exopolysaccharide synthesis, ExoD; InterPro: IPR010331 Among the bacterial genes required for nodule invasion are the exo genes. These genes are involved in the production of an extracellular polysaccharide. Mutations in the exoD result in altered exopolysaccharide production and defects in nodule invasion [].
Probab=26.66 E-value=3.3e+02 Score=21.75 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=29.6
Q ss_pred HhccCCCCCC----cceecHHHHHHHHHHHHHHHHHHHHHHh
Q 029566 63 FRNKQLESLP----ELEVSEEMVNNAAASFRVKINYLLLMAH 100 (191)
Q Consensus 63 ~~~~~~~~~p----~~~is~e~~~~~a~~~~~~~n~~l~~lr 100 (191)
.+|++.+-.| +-++|++.+++..+.+.+..++.-...|
T Consensus 70 ~~Gr~~~WLP~~l~~r~i~~~~l~~~~~~~~p~~~~ler~~r 111 (187)
T PF06055_consen 70 LLGRRHPWLPKFLRRRSISREKLRKAVRRLRPWLRRLERLLR 111 (187)
T ss_pred HcCCCCCCCChHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3677777777 6689999999999988887777765554
No 32
>PF03037 KMP11: Kinetoplastid membrane protein 11; InterPro: IPR004132 Kinetoplastid membrane protein 11 is a major cell surface glycoprotein of the parasite Leishmania donovani. It stimulates T-cell proliferation and may play a role in the immunlogy of the dieases Leishmaniasis.; GO: 0006952 defense response, 0008284 positive regulation of cell proliferation
Probab=25.49 E-value=1.7e+02 Score=20.12 Aligned_cols=31 Identities=16% Similarity=0.348 Sum_probs=23.0
Q ss_pred HHhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029566 147 LYSRFEARVDRYCGMIHKSISQHYKVVDENV 177 (191)
Q Consensus 147 ~Ye~~q~~ID~~~~~~~~~~~~~~~~~~~kv 177 (191)
-||+.+.-|...-.+...+++++-+-+.+|+
T Consensus 47 hyekfe~miqehtdkfnkkm~ehsehfk~kf 77 (90)
T PF03037_consen 47 HYEKFERMIQEHTDKFNKKMHEHSEHFKHKF 77 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888877777777766666554
No 33
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=25.09 E-value=6.3e+02 Score=24.42 Aligned_cols=58 Identities=9% Similarity=0.196 Sum_probs=39.5
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 029566 123 AIGSYFSFFTLAYIGTLLSITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRT 184 (191)
Q Consensus 123 ~vg~~~s~~tLl~~~~v~~fTlP~~Ye~~q~~ID~~~~~~~~~~~~~~~~~~~kv~~kip~~ 184 (191)
.-|+|.+..-++.++++..|.+-..+.-||+..-.+++....++++..+ ..+...|-+
T Consensus 30 ~~~~~l~~i~~l~~~~~~i~~l~~~~~~~~~~~~~~i~~ls~~~~~~~~----~al~nmPiG 87 (655)
T COG3887 30 SFNWWLSAIAVLLLVVFLIFLLLAFTLFYQDSDQNYISYLSYQAEKSLE----EALTNMPIG 87 (655)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhCCce
Confidence 4566666666666666666666666777777666688888888877653 445677754
No 34
>PF14800 DUF4481: Domain of unknown function (DUF4481)
Probab=25.06 E-value=4.2e+02 Score=23.17 Aligned_cols=31 Identities=3% Similarity=0.156 Sum_probs=21.0
Q ss_pred HhhhHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 029566 142 ITVPALYSRFEARVDRYCGMIHKSISQHYKV 172 (191)
Q Consensus 142 fTlP~~Ye~~q~~ID~~~~~~~~~~~~~~~~ 172 (191)
..+=.+.+..|.+++.-.+....++|+..-+
T Consensus 109 ~~l~lv~~~~~rKlN~n~D~rLa~vN~~L~r 139 (308)
T PF14800_consen 109 MALILVFMRHQRKLNMNTDVRLAAVNEALLR 139 (308)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Confidence 3444567777777777777777777777643
No 35
>PHA02677 hypothetical protein; Provisional
Probab=24.83 E-value=1.9e+02 Score=21.24 Aligned_cols=33 Identities=15% Similarity=0.498 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHH
Q 029566 130 FFTLAYIGTLLSITVPALYSRFEARVDRYCGMI 162 (191)
Q Consensus 130 ~~tLl~~~~v~~fTlP~~Ye~~q~~ID~~~~~~ 162 (191)
|+-|+|...+.=-.+|.+-||-+.|=|.+..-.
T Consensus 5 FLilCYFILIFNIiVP~I~EKlR~E~~Af~ky~ 37 (108)
T PHA02677 5 FLIICYFVLIFNILVPGIFEKLRQEHAAFDRLA 37 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466888888888899999999999988876644
No 36
>PRK10945 gene expression modulator; Provisional
Probab=24.37 E-value=64 Score=22.06 Aligned_cols=39 Identities=8% Similarity=0.237 Sum_probs=21.6
Q ss_pred hhhHHHhhchHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 029566 143 TVPALYSRFEARVDR-----YCGMIHKSISQHYKVVDENVISRIPRT 184 (191)
Q Consensus 143 TlP~~Ye~~q~~ID~-----~~~~~~~~~~~~~~~~~~kv~~kip~~ 184 (191)
|+-+++|++++.+.. ..+.+-++..++. ..|...|+|++
T Consensus 23 TLEkvie~~~~~L~~~E~~~f~~AaDHR~AEL~---~~KLyDkVP~~ 66 (72)
T PRK10945 23 TLERVIEKNKYELSDDELAVFYSAADHRLAELT---MNKLYDKIPSS 66 (72)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHH---hchhHhhcCHH
Confidence 667778877766543 2222323333332 23677889864
No 37
>KOG1733 consensus Mitochondrial import inner membrane translocase, subunit TIM13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.91 E-value=1.2e+02 Score=21.84 Aligned_cols=20 Identities=5% Similarity=0.155 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 029566 161 MIHKSISQHYKVVDENVISR 180 (191)
Q Consensus 161 ~~~~~~~~~~~~~~~kv~~k 180 (191)
.+.+.+.++.+++.||+++|
T Consensus 30 lAvAnAqeLv~kisekCf~K 49 (97)
T KOG1733|consen 30 LAVANAQELVSKISEKCFDK 49 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44556678888888888888
No 38
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=23.46 E-value=3.4e+02 Score=22.34 Aligned_cols=28 Identities=14% Similarity=0.010 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 029566 78 EEMVNNAAASFRVKINYLLLMAHDITVG 105 (191)
Q Consensus 78 ~e~~~~~a~~~~~~~n~~l~~lr~l~~~ 105 (191)
++.+....+.+.+-.+.+..-+++.+.|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (224)
T PTZ00443 151 LSFFALTIDFFVSGTNEALRIYDAAFAG 178 (224)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344444444555555555555555544
No 39
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.12 E-value=3.2e+02 Score=20.34 Aligned_cols=16 Identities=19% Similarity=0.355 Sum_probs=6.8
Q ss_pred HHHHHHHHHhhhHHHh
Q 029566 134 AYIGTLLSITVPALYS 149 (191)
Q Consensus 134 l~~~~v~~fTlP~~Ye 149 (191)
+++|+++.|.+-.+..
T Consensus 6 lvvG~iiG~~~~r~~~ 21 (128)
T PF06295_consen 6 LVVGLIIGFLIGRLTS 21 (128)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3444444444444433
No 40
>PF01452 Rota_NSP4: Rotavirus non structural protein; InterPro: IPR002107 This entry contains rotaviral non-structural protein 4 (NSP4) as well as related proteins: NSP5, NS28, and NCVP5. The final steps in the assembly of rotavirus occur in the lumen of the endoplasmic reticulum (ER). Targeting of the immature inner capsid particle (ICP) to this compartment is mediated by the cytoplasmic tail of NSP4, located in the ER membrane [, ].; PDB: 2O1J_D 1G1J_B 1G1I_B 2O1K_B 3MIW_A.
Probab=21.61 E-value=1.3e+02 Score=23.69 Aligned_cols=26 Identities=12% Similarity=0.327 Sum_probs=17.8
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHH
Q 029566 150 RFEARVDRYCGMIHKSISQHYKVVDE 175 (191)
Q Consensus 150 ~~q~~ID~~~~~~~~~~~~~~~~~~~ 175 (191)
.-+|+||.+.+.+-.+++.+.+.++.
T Consensus 90 ttkDeie~qmdrivkemrrQlemidk 115 (173)
T PF01452_consen 90 TTKDEIEKQMDRIVKEMRRQLEMIDK 115 (173)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44788999999999999888887763
No 41
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=20.05 E-value=1.8e+02 Score=22.59 Aligned_cols=33 Identities=9% Similarity=0.193 Sum_probs=27.6
Q ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHHHHHHH
Q 029566 140 LSITVPALYSRFEARVDRYCGMIHKSISQHYKV 172 (191)
Q Consensus 140 ~~fTlP~~Ye~~q~~ID~~~~~~~~~~~~~~~~ 172 (191)
.++-=|.....++.+||..++..+.+++++-+.
T Consensus 96 ~iY~d~~aWk~hr~~ID~eIe~Lq~Ki~~LKei 128 (145)
T PF12548_consen 96 VIYQDPKAWKDHRLHIDHEIETLQDKIKNLKEI 128 (145)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788889999999999999999988654
Done!