Query 029566
Match_columns 191
No_of_seqs 102 out of 426
Neff 7.1
Searched_HMMs 29240
Date Tue Mar 26 00:47:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029566.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029566hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ko2_A Reticulon-4; NOGO, memb 98.8 2.4E-10 8.3E-15 78.6 -0.4 61 53-113 11-79 (79)
2 2g31_A Reticulon-4; NOGO, heli 98.3 7.8E-09 2.7E-13 67.7 -4.1 51 57-107 3-60 (60)
3 3vou_A ION transport 2 domain 47.8 72 0.0025 23.0 7.1 41 141-184 104-144 (148)
4 1oef_A Apolipoprotein E; glyco 44.9 17 0.00057 18.8 2.3 21 155-175 3-23 (26)
5 2l8s_A Integrin alpha-1; trans 40.0 64 0.0022 19.9 4.7 28 40-69 14-41 (54)
6 2knc_A Integrin alpha-IIB; tra 39.4 66 0.0023 19.8 4.8 29 40-70 17-45 (54)
7 1w53_A Phosphoserine phosphata 31.1 59 0.002 21.9 3.8 37 143-179 3-39 (84)
8 1oeg_A Apolipoprotein E; siali 27.8 24 0.00082 18.6 1.1 19 158-176 2-20 (26)
9 2wuj_A Septum site-determining 23.4 1.1E+02 0.0038 18.7 3.9 24 151-174 21-44 (57)
10 2k1a_A Integrin alpha-IIB; sin 18.6 1.4E+02 0.0047 17.3 3.3 25 41-67 16-40 (42)
No 1
>2ko2_A Reticulon-4; NOGO, membrane protein, peripheral, DPC micelle, myelin INHI endoplasmic reticulum, membrane, phosphoprotein, transmembr; NMR {Mus musculus}
Probab=98.85 E-value=2.4e-10 Score=78.61 Aligned_cols=61 Identities=18% Similarity=0.117 Sum_probs=56.5
Q ss_pred HHH-HHHHHHHHhccCCCCCC-------cceecHHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHH
Q 029566 53 LMF-FRANFAAFRNKQLESLP-------ELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKDFRLFFQ 113 (191)
Q Consensus 53 ~~f-l~~~~~~~~~~~~~~~p-------~~~is~e~~~~~a~~~~~~~n~~l~~lr~l~~~~d~~~slk 113 (191)
.+| +|+.+.+.++|+++++| |+.+|+|.+++.++.+..++|.+++++|+++++||+.+|+|
T Consensus 11 ~sfRiYk~vlqavqKtd~~hPFk~YLd~Di~ls~E~~~~~~~~~v~~in~~l~~LRrLfLVedlvDSLK 79 (79)
T 2ko2_A 11 RGMRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLK 79 (79)
T ss_dssp --CTHHHHTHHHHHCTTTTCCSHHHHHHHHHHTTCHHHHHHHCTTTHHHHHHHHHHHHHHHTCTTGGGC
T ss_pred HHHHHHHHHHHHHHhCCCCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcccHHHhcC
Confidence 456 89999999999999999 89999999999999999999999999999999999999875
No 2
>2g31_A Reticulon-4; NOGO, helix, signaling protein; NMR {Homo sapiens} PDB: 2jv5_A
Probab=98.34 E-value=7.8e-09 Score=67.71 Aligned_cols=51 Identities=22% Similarity=0.190 Sum_probs=46.3
Q ss_pred HHHHHHHhccCCCCCC-------cceecHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 029566 57 RANFAAFRNKQLESLP-------ELEVSEEMVNNAAASFRVKINYLLLMAHDITVGKD 107 (191)
Q Consensus 57 ~~~~~~~~~~~~~~~p-------~~~is~e~~~~~a~~~~~~~n~~l~~lr~l~~~~d 107 (191)
|+++.+.++|+++.|| |+.+|+|.+++.++.+..++|.++.++|+++++||
T Consensus 3 Yk~vlqavqKt~~~hPFk~yLd~di~ls~e~~~~~~~~~v~~in~~l~~lrrLfLVed 60 (60)
T 2g31_A 3 YKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDD 60 (60)
T ss_dssp CCTTTTHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHGGGTCHHHHHHHHTSSCTTC
T ss_pred HHHHHHHHHhCCCCCCchhccccCcCCCHHHHHHHHHHHHHHHHHHHHHHhHhhccCC
Confidence 4556677888888889 89999999999999999999999999999999987
No 3
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=47.77 E-value=72 Score=22.98 Aligned_cols=41 Identities=15% Similarity=0.215 Sum_probs=29.6
Q ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 029566 141 SITVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVISRIPRT 184 (191)
Q Consensus 141 ~fTlP~~Ye~~q~~ID~~~~~~~~~~~~~~~~~~~kv~~kip~~ 184 (191)
.+....+.++.+++.|+.-....++.++..+.+++ .+.|+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~rl~~i~~~~~~---~~~~~~ 144 (148)
T 3vou_A 104 NVQLPSILSNRKKETDAYRLEVMEKLEAIEKKLAE---HSRQGS 144 (148)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCcC
Confidence 34566778888888999988888888887777664 456654
No 4
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=44.92 E-value=17 Score=18.81 Aligned_cols=21 Identities=5% Similarity=0.063 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029566 155 VDRYCGMIHKSISQHYKVVDE 175 (191)
Q Consensus 155 ID~~~~~~~~~~~~~~~~~~~ 175 (191)
++++.+.+++++.+.++++.+
T Consensus 3 ~~P~~e~ik~q~~~i~e~i~~ 23 (26)
T 1oef_A 3 FEPLVEDMQRQWAGLVEKVQA 23 (26)
T ss_dssp CTTHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHh
Confidence 567888999999999988764
No 5
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=40.04 E-value=64 Score=19.93 Aligned_cols=28 Identities=25% Similarity=0.515 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 029566 40 LSVCSDVLLLLIVLMFFRANFAAFRNKQLE 69 (191)
Q Consensus 40 isvv~~~~l~~l~~~fl~~~~~~~~~~~~~ 69 (191)
+|+++-++++++++..+|+ .++++|..+
T Consensus 14 ~svl~GLLLL~Lii~~LwK--~GFFKR~~~ 41 (54)
T 2l8s_A 14 LSAFAGLLLLMLLILALWK--IGFFKRPLK 41 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHTTSCCS
T ss_pred HHHHHHHHHHHHHHHHHHH--cCcccCCCc
Confidence 3455555555555555775 478888654
No 6
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=39.42 E-value=66 Score=19.82 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 029566 40 LSVCSDVLLLLIVLMFFRANFAAFRNKQLES 70 (191)
Q Consensus 40 isvv~~~~l~~l~~~fl~~~~~~~~~~~~~~ 70 (191)
+|+++-++++++++..+|+ .++++|..++
T Consensus 17 ~svl~GLllL~li~~~LwK--~GFFkR~~~~ 45 (54)
T 2knc_A 17 VGVLGGLLLLTILVLAMWK--VGFFKRNRPP 45 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHTTTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHH--cCcccCCCCC
Confidence 3445555555555555775 4788876543
No 7
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=31.05 E-value=59 Score=21.89 Aligned_cols=37 Identities=11% Similarity=0.183 Sum_probs=28.2
Q ss_pred hhhHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029566 143 TVPALYSRFEARVDRYCGMIHKSISQHYKVVDENVIS 179 (191)
Q Consensus 143 TlP~~Ye~~q~~ID~~~~~~~~~~~~~~~~~~~kv~~ 179 (191)
+.+.+.++|++.+|+++..-.++.-..-+++...++.
T Consensus 3 ~m~~~~~~Y~~iL~~yl~~~~E~~Ly~~q~fs~~~ie 39 (84)
T 1w53_A 3 FREVIEQRYHQLLSRYIAELTETSLYQAQKFSRKTIE 39 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhHHHHH
Confidence 4567889999999999987777776666666655543
No 8
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=27.79 E-value=24 Score=18.57 Aligned_cols=19 Identities=5% Similarity=0.031 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 029566 158 YCGMIHKSISQHYKVVDEN 176 (191)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~k 176 (191)
+++..+++...+.+|+++.
T Consensus 2 ~~e~mr~Q~~~lveKvq~a 20 (26)
T 1oeg_A 2 LVEDMQRQWAGLVEKVQAA 20 (26)
T ss_dssp HHHHTTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4566667777777666654
No 9
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=23.40 E-value=1.1e+02 Score=18.66 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=19.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 029566 151 FEARVDRYCGMIHKSISQHYKVVD 174 (191)
Q Consensus 151 ~q~~ID~~~~~~~~~~~~~~~~~~ 174 (191)
.++++|.++..+...+..+++...
T Consensus 21 ~~~EVD~FLd~v~~~~~~l~~e~~ 44 (57)
T 2wuj_A 21 DEDEVNEFLAQVRKDYEIVLRKKT 44 (57)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999988888877654
No 10
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=18.63 E-value=1.4e+02 Score=17.31 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC
Q 029566 41 SVCSDVLLLLIVLMFFRANFAAFRNKQ 67 (191)
Q Consensus 41 svv~~~~l~~l~~~fl~~~~~~~~~~~ 67 (191)
|+++-++++++++..+|+ .++++|.
T Consensus 16 s~l~GLllL~li~~~LwK--~GFFkR~ 40 (42)
T 2k1a_A 16 GVLGGLLLLTILVLAMWK--VGFFKRN 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHH--TTTTCCC
T ss_pred HHHHHHHHHHHHHHHHHH--cCcccCC
Confidence 444444444444444664 3566654
Done!