Query 029566
Match_columns 191
No_of_seqs 102 out of 426
Neff 7.1
Searched_HMMs 13730
Date Tue Mar 26 00:47:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029566.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029566hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1i5za1 a.4.5.4 (A:138-206) Ca 43.4 12 0.00086 22.1 3.5 30 73-102 27-56 (69)
2 d1h2vc1 a.118.1.14 (C:29-290) 43.3 59 0.0043 24.1 8.9 31 137-167 142-176 (262)
3 d1cjba_ c.61.1.1 (A:) Hypoxant 28.5 10 0.00076 28.2 1.6 30 141-170 28-64 (228)
4 d2je6a2 d.101.1.1 (A:192-275) 24.7 49 0.0036 19.7 4.3 25 151-175 56-80 (84)
5 d2gaua1 a.4.5.4 (A:152-232) Tr 22.1 51 0.0037 19.4 3.9 30 73-102 27-56 (81)
6 d2d2sa1 a.118.17.2 (A:525-753) 20.8 1.4E+02 0.0099 21.3 6.9 30 80-109 132-161 (229)
7 d2nn6e2 d.101.1.1 (E:192-285) 19.4 95 0.0069 18.9 5.0 27 151-177 57-83 (94)
8 d1z7ga1 c.61.1.1 (A:4-217) Hyp 17.6 26 0.0019 25.5 1.8 30 141-170 17-53 (214)
9 d1ft9a1 a.4.5.4 (A:134-213) CO 16.9 60 0.0044 19.1 3.3 30 73-102 28-57 (80)
10 d2axtl1 f.23.31.1 (L:1-37) Pho 14.9 72 0.0052 16.5 2.7 20 132-151 15-34 (37)
No 1
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=43.36 E-value=12 Score=22.10 Aligned_cols=30 Identities=13% Similarity=0.305 Sum_probs=27.3
Q ss_pred cceecHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029566 73 ELEVSEEMVNNAAASFRVKINYLLLMAHDI 102 (191)
Q Consensus 73 ~~~is~e~~~~~a~~~~~~~n~~l~~lr~l 102 (191)
++.+|++++-+++..-++.+|..++.+++-
T Consensus 27 ~l~lt~~~lA~~~G~sRetvsr~L~~l~~~ 56 (69)
T d1i5za1 27 QIKITRQEIGQIVGCSRETVGRILKMLEDQ 56 (69)
T ss_dssp EEECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred ecCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 678999999999999999999999998864
No 2
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.25 E-value=59 Score=24.11 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=19.5
Q ss_pred HHHHHHhhhH----HHhhchHHHHHHHHHHHHHHH
Q 029566 137 GTLLSITVPA----LYSRFEARVDRYCGMIHKSIS 167 (191)
Q Consensus 137 ~~v~~fTlP~----~Ye~~q~~ID~~~~~~~~~~~ 167 (191)
.-..+-|+|- +|++++++.|+.++.+...++
T Consensus 142 ~~~vL~~LP~~g~~l~~~~~~~~~~ll~~i~~y~~ 176 (262)
T d1h2vc1 142 VYAFLSSLPWVGKELYEKKDAEMDRIFANTESYLK 176 (262)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 3345666665 467777777777766655543
No 3
>d1cjba_ c.61.1.1 (A:) Hypoxanthine-guanine PRTase (HGPRTase) {Plasmodium falciparum [TaxId: 5833]}
Probab=28.46 E-value=10 Score=28.17 Aligned_cols=30 Identities=20% Similarity=0.440 Sum_probs=24.0
Q ss_pred HHhhhHHHhhc-------hHHHHHHHHHHHHHHHHHH
Q 029566 141 SITVPALYSRF-------EARVDRYCGMIHKSISQHY 170 (191)
Q Consensus 141 ~fTlP~~Ye~~-------q~~ID~~~~~~~~~~~~~~ 170 (191)
+|++|..|++| +++|++.++..-.++.+.|
T Consensus 28 ~f~~p~~y~~~~~~Vli~~~~I~~rI~rLA~eI~~~y 64 (228)
T d1cjba_ 28 SFMIPAHYKKYLTKVLVPNGVIKNRIEKLAYDIKKVY 64 (228)
T ss_dssp GSCCCTTTGGGEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred hccCccchhccccEEecCHHHHHHHHHHHHHHHHHHc
Confidence 58999999987 5678888887777777666
No 4
>d2je6a2 d.101.1.1 (A:192-275) Exosome complex exonuclease 2, ECX2 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=24.69 E-value=49 Score=19.73 Aligned_cols=25 Identities=4% Similarity=-0.000 Sum_probs=21.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Q 029566 151 FEARVDRYCGMIHKSISQHYKVVDE 175 (191)
Q Consensus 151 ~q~~ID~~~~~~~~~~~~~~~~~~~ 175 (191)
-+++|++.++.+.++.+++++.+++
T Consensus 56 ~~~~i~~~i~~A~~~~~~l~~~l~~ 80 (84)
T d2je6a2 56 SLQDIDQAENTARSTAVKLLEELKK 80 (84)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999988864
No 5
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=22.12 E-value=51 Score=19.36 Aligned_cols=30 Identities=10% Similarity=-0.106 Sum_probs=26.3
Q ss_pred cceecHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029566 73 ELEVSEEMVNNAAASFRVKINYLLLMAHDI 102 (191)
Q Consensus 73 ~~~is~e~~~~~a~~~~~~~n~~l~~lr~l 102 (191)
++.+|++++-+++..-++.+|..+..+++-
T Consensus 27 ~~~lt~~eLA~~~G~sretvsr~L~~l~~~ 56 (81)
T d2gaua1 27 SIYLSREELATLSNMTVSNAIRTLSTFVSE 56 (81)
T ss_dssp SCCCCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred eecCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 567899999999999999999999988764
No 6
>d2d2sa1 a.118.17.2 (A:525-753) Exocyst complex component EXO84 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.77 E-value=1.4e+02 Score=21.33 Aligned_cols=30 Identities=13% Similarity=-0.073 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccchH
Q 029566 80 MVNNAAASFRVKINYLLLMAHDITVGKDFR 109 (191)
Q Consensus 80 ~~~~~a~~~~~~~n~~l~~lr~l~~~~d~~ 109 (191)
-+.++++.....+-.+...++.+|.++++.
T Consensus 132 Yi~~l~~i~f~~i~~t~~~y~aiF~~~~~~ 161 (229)
T d2d2sa1 132 YLTQLAVIRFQTIKKTVEDFQDIFKELGAK 161 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 355667777777777777777777666554
No 7
>d2nn6e2 d.101.1.1 (E:192-285) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.44 E-value=95 Score=18.88 Aligned_cols=27 Identities=4% Similarity=-0.221 Sum_probs=22.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029566 151 FEARVDRYCGMIHKSISQHYKVVDENV 177 (191)
Q Consensus 151 ~q~~ID~~~~~~~~~~~~~~~~~~~kv 177 (191)
..++|++.++.+....+++++.+++.+
T Consensus 57 ~~~~i~~~i~~A~~~~~el~~~l~~~L 83 (94)
T d2nn6e2 57 DPESIFEMMETGKRVGKVLHASLQSVV 83 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999998887544
No 8
>d1z7ga1 c.61.1.1 (A:4-217) Hypoxanthine-guanine PRTase (HGPRTase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.57 E-value=26 Score=25.53 Aligned_cols=30 Identities=7% Similarity=0.158 Sum_probs=24.4
Q ss_pred HHhhhHHHhhc-------hHHHHHHHHHHHHHHHHHH
Q 029566 141 SITVPALYSRF-------EARVDRYCGMIHKSISQHY 170 (191)
Q Consensus 141 ~fTlP~~Ye~~-------q~~ID~~~~~~~~~~~~~~ 170 (191)
+|++|.-|+++ +++|.+.++..-.++.+.|
T Consensus 17 ~f~~p~~~~~~~~~ilis~~~I~~~I~rLA~qI~~~y 53 (214)
T d1z7ga1 17 LFCIPNHYAEDLERVFIPHGLIMDRTERLARDVMKEM 53 (214)
T ss_dssp GSCCCGGGTTTEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred hcccchhhhccccEEecCHHHHHHHHHHHHHHHHHHc
Confidence 57899999887 7788888888888887666
No 9
>d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}
Probab=16.87 E-value=60 Score=19.11 Aligned_cols=30 Identities=17% Similarity=0.058 Sum_probs=25.7
Q ss_pred cceecHHHHHHHHHHHHHHHHHHHHHHhhh
Q 029566 73 ELEVSEEMVNNAAASFRVKINYLLLMAHDI 102 (191)
Q Consensus 73 ~~~is~e~~~~~a~~~~~~~n~~l~~lr~l 102 (191)
.+.+|++++-+++..-++.+|..+..+++-
T Consensus 28 ~~~~t~~eiA~~lG~sretvsr~l~~l~~~ 57 (80)
T d1ft9a1 28 SVDFTVEEIANLIGSSRQTTSTALNSLIKE 57 (80)
T ss_dssp EECCCHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred ecCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 356789999999999999999999988764
No 10
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=14.87 E-value=72 Score=16.50 Aligned_cols=20 Identities=35% Similarity=0.687 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhhhHHHhhc
Q 029566 132 TLAYIGTLLSITVPALYSRF 151 (191)
Q Consensus 132 tLl~~~~v~~fTlP~~Ye~~ 151 (191)
|=+|.|....|.+-.++..|
T Consensus 15 tsLy~GlLlifvl~vLFssY 34 (37)
T d2axtl1 15 TSLYLGLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 44566666666666665554
Done!