BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029568
(191 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZA0|A Chain A, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
pdb|2ZA0|B Chain B, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
Length = 184
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 57/145 (39%), Gaps = 33/145 (22%)
Query: 32 SVRFYEDVLGFVLIKR---------------------PSSFNFNGAWLYNYGIGIHLIEN 70
S+ FY VLG L+++ P + AW ++ + L N
Sbjct: 45 SLDFYTRVLGLTLLQKLDFPAMKFSLYFLAYEDKNDIPKDKSEKTAWTFSRKATLELTHN 104
Query: 71 PSIDDFDTVT------EPRPINPKDNHISFQCTDVALVKRRLEDMGMRYVTAVVEDDGTR 124
+D +T + +PR HI DV +R E++G+++V DDG
Sbjct: 105 WGTEDDETQSYHNGNSDPRGFG----HIGIAVPDVYSACKRFEELGVKFVKK--PDDGKM 158
Query: 125 VDQVFFHDPDGYMIELCNCENIPII 149
F DPDGY IE+ N I I
Sbjct: 159 KGLAFIQDPDGYWIEILNPNKIATI 183
>pdb|1FRO|A Chain A, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|B Chain B, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|C Chain C, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|D Chain D, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1QIN|A Chain A, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIN|B Chain B, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIP|A Chain A, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|B Chain B, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|C Chain C, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|D Chain D, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
Length = 183
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 54/138 (39%), Gaps = 33/138 (23%)
Query: 32 SVRFYEDVLGFVLIKR---------------------PSSFNFNGAWLYNYGIGIHLIEN 70
S+ FY VLG LI++ P + AW + + L N
Sbjct: 44 SLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWALSRKATLELTHN 103
Query: 71 PSIDDFDTVT------EPRPINPKDNHISFQCTDVALVKRRLEDMGMRYVTAVVEDDGTR 124
+D +T + +PR HI DV +R E++G+++V DDG
Sbjct: 104 WGTEDDETQSYHNGNSDPRGFG----HIGIAVPDVYSACKRFEELGVKFVKK--PDDGKM 157
Query: 125 VDQVFFHDPDGYMIELCN 142
F DPDGY IE+ N
Sbjct: 158 KGLAFIQDPDGYWIEILN 175
>pdb|3VW9|A Chain A, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
pdb|3VW9|B Chain B, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
Length = 187
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 54/138 (39%), Gaps = 33/138 (23%)
Query: 32 SVRFYEDVLGFVLIKR---------------------PSSFNFNGAWLYNYGIGIHLIEN 70
S+ FY VLG LI++ P + AW + + L N
Sbjct: 48 SLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWALSRKATLELTHN 107
Query: 71 PSIDDFDTVT------EPRPINPKDNHISFQCTDVALVKRRLEDMGMRYVTAVVEDDGTR 124
+D +T + +PR HI DV +R E++G+++V DDG
Sbjct: 108 WGTEDDETQSYHNGNSDPRGFG----HIGIAVPDVYSACKRFEELGVKFVKK--PDDGKM 161
Query: 125 VDQVFFHDPDGYMIELCN 142
F DPDGY IE+ N
Sbjct: 162 KGLAFIQDPDGYWIEILN 179
>pdb|1BH5|A Chain A, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|B Chain B, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|C Chain C, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|D Chain D, Human Glyoxalase I Q33e, E172q Double Mutant
Length = 183
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 54/138 (39%), Gaps = 33/138 (23%)
Query: 32 SVRFYEDVLGFVLIKR---------------------PSSFNFNGAWLYNYGIGIHLIEN 70
S+ FY VLG LI++ P + AW + + L N
Sbjct: 44 SLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWALSRKATLELTHN 103
Query: 71 PSIDDFDTVT------EPRPINPKDNHISFQCTDVALVKRRLEDMGMRYVTAVVEDDGTR 124
+D +T + +PR HI DV +R E++G+++V DDG
Sbjct: 104 WGTEDDETQSYHNGNSDPRGFG----HIGIAVPDVYSACKRFEELGVKFVKK--PDDGKM 157
Query: 125 VDQVFFHDPDGYMIELCN 142
F DPDGY I++ N
Sbjct: 158 KGLAFIQDPDGYWIQILN 175
>pdb|3L7T|A Chain A, Crystal Structure Of Smu.1112c
pdb|3L7T|B Chain B, Crystal Structure Of Smu.1112c
pdb|3L7T|C Chain C, Crystal Structure Of Smu.1112c
pdb|3L7T|D Chain D, Crystal Structure Of Smu.1112c
Length = 134
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 11/117 (9%)
Query: 32 SVRFYEDVLGFVLIK---RPSSFNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPIN-P 87
S FY + LGF +I+ RP ++ L I + + N + D + P I+ P
Sbjct: 19 SYEFYVNQLGFEVIRENHRPKRHDYKLD-LKCGDIELEIFGN-KLTDSNYCAPPERISWP 76
Query: 88 KD----NHISFQCTDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIEL 140
++ H++F DV ++ L +G+R V V DD T FF DPDG +EL
Sbjct: 77 REACGLRHLAFYVEDVEASRQELIALGIR-VEEVRYDDYTGKKMAFFFDPDGLPLEL 132
>pdb|3GHJ|A Chain A, Crystal Structure From The Mobile Metagenome Of Halifax
Harbour Sewage Outfall: Integron Cassette Protein
Hfx_cass4
Length = 141
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 16/113 (14%)
Query: 31 DSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDN 90
S +FY ++LGF S+ +N W+ + L E N +
Sbjct: 41 KSSQFYTEILGFEAGLLDSARRWNFLWVSGRAGXVVLQEEKE-------------NWQQQ 87
Query: 91 HISFQC--TDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELC 141
H SF+ +++ +K+ LE G+ V V + + ++F DP+G+ +E
Sbjct: 88 HFSFRVEKSEIEPLKKALESKGVS-VHGPVNQEWXQAVSLYFADPNGHALEFT 139
>pdb|3HNQ|A Chain A, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|B Chain B, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|C Chain C, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
pdb|3HNQ|D Chain D, Crystal Structure Of Virulence Protein Stm3117 From
Salmonella Typhimurium. Northeast Structural Genomics
Consortium Target Id Str274
Length = 144
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 15/119 (12%)
Query: 29 VWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPK 88
+ ++RFYE+VLGF + +F N L I+L + + EP+ P
Sbjct: 34 ISTTIRFYEEVLGFSAV----TFKQNRKALIFGAQKINLHQQ------EXEFEPKASRPT 83
Query: 89 DNHISF---QCTDVALVKRRLEDMGMRYVTAVVEDDGT--RVDQVFFHDPDGYMIELCN 142
T + V + G+ V VE G + ++ DPDG +IE+
Sbjct: 84 PGSADLCFITSTPINDVVSEILQAGISIVEGPVERTGATGEIXSIYIRDPDGNLIEISQ 142
>pdb|3HUH|A Chain A, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|B Chain B, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|C Chain C, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|D Chain D, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
Length = 152
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 15/119 (12%)
Query: 29 VWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPK 88
+ ++RFYE+VLGF + +F N L I+L + + EP+ P
Sbjct: 34 ISTTIRFYEEVLGFSAV----TFKQNRKALIFGAQKINLHQQ------EMEFEPKASRPT 83
Query: 89 DNHISF---QCTDVALVKRRLEDMGMRYVTAVVEDDGT--RVDQVFFHDPDGYMIELCN 142
T + V + G+ V VE G + ++ DPDG +IE+
Sbjct: 84 PGSADLCFITSTPINDVVSEILQAGISIVEGPVERTGATGEIMSIYIRDPDGNLIEISQ 142
>pdb|1F9Z|A Chain A, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1F9Z|B Chain B, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1FA5|A Chain A, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA5|B Chain B, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|A Chain A, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|B Chain B, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|A Chain A, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|B Chain B, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA8|A Chain A, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
pdb|1FA8|B Chain B, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
Length = 135
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 15/116 (12%)
Query: 32 SVRFYEDVLGFVLIKRPSS--FNFNGAWLYNYG-----IGIHLIENPSIDDFDTVTEPRP 84
S+ FY VLG L++ + + ++ A++ YG I L N +D ++
Sbjct: 16 SIDFYTKVLGMKLLRTSENPEYKYSLAFV-GYGPETEEAVIELTYNWGVDKYE------- 67
Query: 85 INPKDNHISFQCTDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIEL 140
+ HI+ + A ++ G G F DPDGY IEL
Sbjct: 68 LGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIEL 123
>pdb|3EY7|A Chain A, Structure From The Mobile Metagenome Of V. Cholerae.
Integron Cassette Protein Vch_cass1
pdb|3EY7|B Chain B, Structure From The Mobile Metagenome Of V. Cholerae.
Integron Cassette Protein Vch_cass1
Length = 133
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 23/123 (18%)
Query: 32 SVRFYEDVLGFVLIKRPSSFNFNGAWLYNYG---IGIHLIENPSIDDFDTVTEPRPINPK 88
+ FYE VLG + SF G +G I +H + N +F EP+ N +
Sbjct: 24 TTNFYEKVLG----XKAVSFG-AGRIALEFGHQKINLHQLGN----EF----EPKAQNVR 70
Query: 89 DNHISFQC--TDVAL--VKRRLEDMGMRYVTAVVEDDGTR--VDQVFFHDPDGYMIELCN 142
C TD L + +ED G+ V+ G + + +F DPDG +IE+
Sbjct: 71 VGSADL-CFITDTVLSDAXKHVEDQGVTIXEGPVKRTGAQGAITSFYFRDPDGNLIEVST 129
Query: 143 CEN 145
N
Sbjct: 130 YSN 132
>pdb|2P25|A Chain A, The Crystal Structure Of The Glyoxalase Family Protein
From Enterococcus Faecalis
Length = 126
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 9/109 (8%)
Query: 35 FYEDVLGFVLIKRPSSFNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKD---NH 91
FY + LGF +++ N L + +G +E D F RP P+ H
Sbjct: 22 FYVEKLGFEVLRENHRPEKNDIKL-DLKLGSQELEIFISDQFPA----RPSYPEALGLRH 76
Query: 92 ISFQCTDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIEL 140
++F+ + V L + G+ V DD T FF DPDG +EL
Sbjct: 77 LAFKVEHIEEVIAFLNEQGIETEPLRV-DDFTGKKXTFFFDPDGLPLEL 124
>pdb|4D9O|A Chain A, Structure Of Ebolavirus Protein Vp24 From Reston
pdb|4D9O|B Chain B, Structure Of Ebolavirus Protein Vp24 From Reston
Length = 236
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 30 WDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYGIGIHLIENPS 72
W + F G L+ R + +F AW + HL +NP+
Sbjct: 47 WAGIEFDVSQKGMALLTRLKTNDFAPAWAMTRNLFPHLFQNPN 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,541,309
Number of Sequences: 62578
Number of extensions: 228476
Number of successful extensions: 492
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 485
Number of HSP's gapped (non-prelim): 13
length of query: 191
length of database: 14,973,337
effective HSP length: 93
effective length of query: 98
effective length of database: 9,153,583
effective search space: 897051134
effective search space used: 897051134
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)