Query 029568
Match_columns 191
No_of_seqs 132 out of 1639
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 15:00:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029568.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029568hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11478 putative lyase; Provi 99.9 1.4E-20 2.9E-25 133.0 15.9 124 14-142 2-128 (129)
2 cd08353 Glo_EDI_BRP_like_7 Thi 99.9 2.3E-20 5.1E-25 134.1 16.3 126 16-143 1-141 (142)
3 PRK04101 fosfomycin resistance 99.9 1.7E-20 3.8E-25 134.7 14.4 131 15-168 1-133 (139)
4 cd08342 HPPD_N_like N-terminal 99.8 1.2E-19 2.5E-24 129.9 16.1 126 19-146 1-126 (136)
5 cd08364 FosX FosX, a fosfomyci 99.8 7.2E-20 1.6E-24 130.2 14.6 126 15-163 1-131 (131)
6 cd07253 Glo_EDI_BRP_like_2 Thi 99.8 2.1E-19 4.5E-24 125.5 15.1 122 16-143 1-125 (125)
7 PLN02367 lactoylglutathione ly 99.8 2.6E-19 5.6E-24 137.2 16.7 126 17-145 74-224 (233)
8 cd08363 FosB FosB, a fosfomyci 99.8 7.5E-20 1.6E-24 130.2 12.9 127 19-168 1-129 (131)
9 cd07243 2_3_CTD_C C-terminal d 99.8 3.5E-19 7.7E-24 128.6 14.7 118 14-143 2-125 (143)
10 cd08352 Glo_EDI_BRP_like_1 Thi 99.8 5E-19 1.1E-23 123.6 14.9 122 16-142 1-125 (125)
11 cd07241 Glo_EDI_BRP_like_3 Thi 99.8 6.1E-19 1.3E-23 123.4 14.6 119 18-141 1-125 (125)
12 TIGR03645 glyox_marine lactoyl 99.8 8.1E-19 1.8E-23 129.3 15.5 127 17-145 3-153 (162)
13 PLN03042 Lactoylglutathione ly 99.8 1.3E-18 2.7E-23 130.4 16.6 128 17-146 26-177 (185)
14 cd08347 PcpA_C_like C-terminal 99.8 1.2E-18 2.5E-23 127.8 15.7 116 18-145 1-122 (157)
15 cd07265 2_3_CTD_N N-terminal d 99.8 2.2E-18 4.7E-23 120.7 15.0 114 16-144 2-120 (122)
16 cd07245 Glo_EDI_BRP_like_9 Thi 99.8 1.8E-18 3.9E-23 118.4 12.8 113 19-140 1-114 (114)
17 cd09011 Glo_EDI_BRP_like_23 Th 99.8 3.7E-18 8E-23 119.3 14.4 118 17-143 1-119 (120)
18 cd09014 BphC-JF8_C_like C-term 99.8 5.3E-18 1.1E-22 125.4 16.0 121 14-143 2-127 (166)
19 cd07233 Glyoxalase_I Glyoxalas 99.8 3.9E-18 8.5E-23 118.8 14.5 115 19-141 1-121 (121)
20 TIGR00068 glyox_I lactoylgluta 99.8 5.6E-18 1.2E-22 123.1 15.7 126 13-145 12-143 (150)
21 cd07267 THT_Oxygenase_N N-term 99.8 5.2E-18 1.1E-22 117.5 14.6 110 16-143 1-110 (113)
22 cd07257 THT_oxygenase_C The C- 99.8 1.4E-18 2.9E-23 126.9 11.9 121 18-145 1-127 (153)
23 cd07255 Glo_EDI_BRP_like_12 Th 99.8 1.1E-17 2.4E-22 117.3 16.0 115 17-144 1-120 (125)
24 cd08361 PpCmtC_N N-terminal do 99.8 4.1E-18 8.8E-23 120.0 13.6 113 14-143 2-119 (124)
25 cd09013 BphC-JF8_N_like N-term 99.8 7.2E-18 1.6E-22 118.0 14.7 110 14-143 2-118 (121)
26 TIGR03081 metmalonyl_epim meth 99.8 1.4E-18 3.1E-23 122.2 11.2 123 18-142 1-128 (128)
27 cd08360 MhqB_like_C C-terminal 99.8 1E-17 2.2E-22 119.5 15.6 113 17-144 2-121 (134)
28 cd08351 ChaP_like ChaP, an enz 99.8 1.4E-17 3E-22 117.0 15.0 111 16-143 2-121 (123)
29 cd07266 HPCD_N_class_II N-term 99.8 7.7E-18 1.7E-22 117.6 13.6 114 15-144 1-119 (121)
30 cd07252 BphC1-RGP6_N_like N-te 99.8 7.3E-18 1.6E-22 117.9 13.4 112 17-143 1-117 (120)
31 cd07237 BphC1-RGP6_C_like C-te 99.8 8E-18 1.7E-22 123.0 14.0 117 15-144 6-132 (154)
32 cd07242 Glo_EDI_BRP_like_6 Thi 99.8 1.9E-17 4E-22 116.7 15.5 118 18-142 1-127 (128)
33 PRK06724 hypothetical protein; 99.8 1.3E-17 2.8E-22 118.3 14.2 112 15-143 4-123 (128)
34 PLN02300 lactoylglutathione ly 99.8 2E-17 4.4E-22 132.3 16.7 128 13-147 19-152 (286)
35 cd07247 SgaA_N_like N-terminal 99.8 3.1E-17 6.6E-22 113.3 15.3 113 19-142 1-114 (114)
36 cd07240 ED_TypeI_classII_N N-t 99.8 1.7E-17 3.7E-22 114.9 14.0 110 17-143 1-114 (117)
37 cd08357 Glo_EDI_BRP_like_18 Th 99.8 1.8E-17 3.9E-22 116.1 14.2 119 21-143 2-125 (125)
38 cd08362 BphC5-RrK37_N_like N-t 99.8 1.7E-17 3.6E-22 115.6 13.7 113 16-143 1-117 (120)
39 cd07244 FosA FosA, a Fosfomyci 99.8 1.1E-17 2.5E-22 117.1 12.5 107 18-142 1-109 (121)
40 cd07264 Glo_EDI_BRP_like_15 Th 99.8 3.9E-17 8.4E-22 114.4 15.1 121 19-142 1-124 (125)
41 PF00903 Glyoxalase: Glyoxalas 99.8 8.5E-18 1.8E-22 117.5 11.5 118 18-140 1-128 (128)
42 PRK10291 glyoxalase I; Provisi 99.8 3.6E-17 7.7E-22 115.8 14.7 115 23-144 1-121 (129)
43 cd07239 BphC5-RK37_C_like C-te 99.8 4.4E-17 9.4E-22 117.8 14.7 111 17-144 3-118 (144)
44 cd08345 Fosfomycin_RP Fosfomyc 99.8 2.1E-17 4.6E-22 113.9 12.5 108 21-142 1-110 (113)
45 cd08359 Glo_EDI_BRP_like_22 Th 99.8 6.4E-17 1.4E-21 112.6 14.9 113 21-142 4-119 (119)
46 cd08346 PcpA_N_like N-terminal 99.8 4E-17 8.7E-22 114.1 13.9 116 18-141 1-126 (126)
47 cd07263 Glo_EDI_BRP_like_16 Th 99.8 5.9E-17 1.3E-21 112.0 14.5 114 21-142 1-119 (119)
48 cd07256 HPCD_C_class_II C-term 99.8 4.6E-17 9.9E-22 119.8 14.4 116 17-144 2-124 (161)
49 cd07258 PpCmtC_C C-terminal do 99.7 2.9E-17 6.2E-22 118.4 11.9 112 20-145 1-116 (141)
50 cd08355 Glo_EDI_BRP_like_14 Th 99.7 2.4E-16 5.2E-21 110.3 16.3 118 22-143 3-122 (122)
51 cd07249 MMCE Methylmalonyl-CoA 99.7 3.9E-17 8.5E-22 114.6 11.9 123 19-142 1-128 (128)
52 cd09012 Glo_EDI_BRP_like_24 Th 99.7 1.1E-16 2.3E-21 112.5 13.0 118 20-142 2-123 (124)
53 cd08348 BphC2-C3-RGP6_C_like T 99.7 4.2E-16 9E-21 110.8 15.8 115 18-144 1-121 (134)
54 PF12681 Glyoxalase_2: Glyoxal 99.7 1.3E-16 2.7E-21 109.0 12.5 104 24-141 1-108 (108)
55 cd07238 Glo_EDI_BRP_like_5 Thi 99.7 2.9E-16 6.3E-21 108.2 14.3 106 21-143 3-111 (112)
56 cd07235 MRD Mitomycin C resist 99.7 2E-16 4.3E-21 110.6 13.3 117 19-141 1-121 (122)
57 cd07254 Glo_EDI_BRP_like_20 Th 99.7 4.1E-16 8.8E-21 108.8 14.8 112 20-144 3-118 (120)
58 cd08343 ED_TypeI_classII_C C-t 99.7 4.2E-16 9.1E-21 110.6 15.1 115 20-145 1-119 (131)
59 cd07262 Glo_EDI_BRP_like_19 Th 99.7 2.8E-16 6.2E-21 109.9 13.9 112 19-141 1-122 (123)
60 cd08350 BLMT_like BLMT, a bleo 99.7 3.5E-16 7.6E-21 109.3 13.9 108 21-143 5-119 (120)
61 cd08354 Glo_EDI_BRP_like_13 Th 99.7 5.5E-16 1.2E-20 108.0 14.6 118 19-142 1-121 (122)
62 cd07246 Glo_EDI_BRP_like_8 Thi 99.7 8.9E-16 1.9E-20 106.9 15.5 115 22-142 5-121 (122)
63 cd07261 Glo_EDI_BRP_like_11 Th 99.7 5.5E-16 1.2E-20 107.1 14.0 108 22-141 2-113 (114)
64 cd08349 BLMA_like Bleomycin bi 99.7 7.6E-16 1.6E-20 105.6 14.3 109 23-142 3-112 (112)
65 cd08344 MhqB_like_N N-terminal 99.7 9.8E-16 2.1E-20 105.8 13.6 103 18-143 2-109 (112)
66 TIGR03211 catechol_2_3 catecho 99.7 7.5E-16 1.6E-20 124.1 14.5 120 12-142 139-264 (303)
67 cd06587 Glo_EDI_BRP_like This 99.7 9.5E-16 2.1E-20 103.8 12.9 112 21-140 1-112 (112)
68 cd08356 Glo_EDI_BRP_like_17 Th 99.7 8.5E-16 1.8E-20 106.5 12.7 104 22-142 5-113 (113)
69 TIGR03213 23dbph12diox 2,3-dih 99.7 1E-15 2.2E-20 122.5 14.9 116 16-143 140-263 (286)
70 cd08358 Glo_EDI_BRP_like_21 Th 99.7 1.2E-15 2.7E-20 107.6 13.5 108 18-142 2-126 (127)
71 TIGR03211 catechol_2_3 catecho 99.7 1.4E-15 3E-20 122.6 13.6 111 16-145 2-120 (303)
72 TIGR02295 HpaD 3,4-dihydroxyph 99.7 3.3E-15 7.2E-20 119.8 14.7 118 13-144 131-257 (294)
73 cd07251 Glo_EDI_BRP_like_10 Th 99.7 3.7E-15 8.1E-20 103.6 13.0 116 22-142 2-120 (121)
74 TIGR03213 23dbph12diox 2,3-dih 99.6 3.4E-15 7.3E-20 119.5 13.5 112 16-144 1-119 (286)
75 TIGR02295 HpaD 3,4-dihydroxyph 99.6 8E-15 1.7E-19 117.6 15.1 111 15-144 1-116 (294)
76 KOG2944 Glyoxalase [Carbohydra 99.6 3.1E-14 6.8E-19 101.1 12.1 129 13-143 17-168 (170)
77 PLN02300 lactoylglutathione ly 99.6 1.7E-13 3.8E-18 109.7 15.9 122 16-144 152-279 (286)
78 PF13669 Glyoxalase_4: Glyoxal 99.5 6.4E-14 1.4E-18 96.4 9.2 104 20-128 1-108 (109)
79 COG2514 Predicted ring-cleavag 99.5 2.4E-12 5.2E-17 99.4 13.4 116 16-144 8-127 (265)
80 COG3324 Predicted enzyme relat 99.4 1.3E-11 2.7E-16 86.3 14.1 117 16-143 7-125 (127)
81 COG3565 Predicted dioxygenase 99.4 5.9E-12 1.3E-16 84.9 11.8 122 19-145 5-131 (138)
82 COG3607 Predicted lactoylgluta 99.4 6.9E-12 1.5E-16 85.8 9.8 123 18-144 3-128 (133)
83 cd07250 HPPD_C_like C-terminal 99.3 2.3E-11 4.9E-16 92.0 8.3 129 16-144 1-157 (191)
84 cd06588 PhnB_like Escherichia 99.2 6.1E-10 1.3E-14 78.7 13.9 110 22-141 3-128 (128)
85 COG0346 GloA Lactoylglutathion 99.2 1.2E-10 2.7E-15 80.8 8.3 123 17-142 1-138 (138)
86 TIGR01263 4HPPD 4-hydroxypheny 99.2 4.4E-10 9.5E-15 92.6 12.7 134 11-144 151-311 (353)
87 TIGR01263 4HPPD 4-hydroxypheny 99.2 1.1E-09 2.3E-14 90.3 13.6 125 18-143 2-127 (353)
88 KOG2943 Predicted glyoxalase [ 99.1 1.7E-09 3.7E-14 82.1 10.8 139 17-171 16-175 (299)
89 COG2764 PhnB Uncharacterized p 99.0 3.5E-08 7.7E-13 70.0 14.8 114 22-144 4-132 (136)
90 PRK01037 trmD tRNA (guanine-N( 99.0 5.7E-09 1.2E-13 84.1 10.0 104 19-143 248-354 (357)
91 KOG2943 Predicted glyoxalase [ 98.8 3.3E-08 7.2E-13 75.2 9.9 116 18-144 149-271 (299)
92 PLN02875 4-hydroxyphenylpyruva 98.8 1.5E-08 3.2E-13 84.0 8.0 131 14-144 176-341 (398)
93 KOG0638 4-hydroxyphenylpyruvat 98.7 9.7E-08 2.1E-12 75.5 8.6 129 6-134 5-139 (381)
94 COG2514 Predicted ring-cleavag 98.7 2.2E-07 4.7E-12 72.2 10.2 78 15-98 165-242 (265)
95 PRK10148 hypothetical protein; 98.7 2.6E-06 5.6E-11 61.7 15.2 114 22-146 5-144 (147)
96 PF14506 CppA_N: CppA N-termin 98.6 4E-06 8.7E-11 57.4 13.6 113 20-145 2-116 (125)
97 PF14696 Glyoxalase_5: Hydroxy 98.4 2.5E-06 5.3E-11 60.9 8.6 124 13-144 4-127 (139)
98 PLN02875 4-hydroxyphenylpyruva 98.4 8.8E-06 1.9E-10 67.7 12.8 126 19-144 1-152 (398)
99 PF13468 Glyoxalase_3: Glyoxal 98.3 2.1E-05 4.5E-10 58.5 11.2 126 19-144 1-138 (175)
100 COG3185 4-hydroxyphenylpyruvat 97.9 1.4E-05 3E-10 64.4 3.6 105 13-117 162-274 (363)
101 KOG0638 4-hydroxyphenylpyruvat 97.3 0.0005 1.1E-08 54.9 5.1 131 12-143 172-337 (381)
102 COG3185 4-hydroxyphenylpyruvat 97.0 0.013 2.9E-07 47.6 10.9 117 11-134 15-141 (363)
103 PF06983 3-dmu-9_3-mt: 3-demet 96.9 0.032 6.9E-07 38.6 10.6 94 27-141 11-116 (116)
104 PF13669 Glyoxalase_4: Glyoxal 96.7 0.011 2.5E-07 40.0 7.3 55 90-145 1-57 (109)
105 PF14507 CppA_C: CppA C-termin 96.6 0.0082 1.8E-07 40.3 5.7 92 19-140 6-100 (101)
106 PF15067 FAM124: FAM124 family 96.1 0.071 1.5E-06 41.1 9.1 102 19-140 129-235 (236)
107 PF13468 Glyoxalase_3: Glyoxal 94.0 0.11 2.5E-06 38.3 4.7 55 89-145 1-56 (175)
108 KOG2944 Glyoxalase [Carbohydra 93.6 0.42 9.1E-06 34.7 6.7 51 17-68 114-166 (170)
109 cd08353 Glo_EDI_BRP_like_7 Thi 93.4 0.68 1.5E-05 32.4 7.8 57 88-144 3-70 (142)
110 cd08346 PcpA_N_like N-terminal 92.2 1.4 3E-05 29.7 7.8 58 88-145 1-62 (126)
111 cd08352 Glo_EDI_BRP_like_1 Thi 92.0 2 4.2E-05 28.8 8.4 56 88-144 3-59 (125)
112 TIGR03645 glyox_marine lactoyl 91.3 2.2 4.8E-05 31.0 8.3 59 87-145 3-79 (162)
113 PF13670 PepSY_2: Peptidase pr 91.0 1.3 2.9E-05 28.4 6.3 45 98-144 30-74 (83)
114 cd07249 MMCE Methylmalonyl-CoA 88.5 2.7 5.9E-05 28.3 6.7 55 89-144 1-56 (128)
115 cd07241 Glo_EDI_BRP_like_3 Thi 87.8 6.1 0.00013 26.4 8.1 55 89-144 2-57 (125)
116 PF00903 Glyoxalase: Glyoxalas 86.8 7.2 0.00016 25.9 8.6 56 88-144 1-58 (128)
117 cd07250 HPPD_C_like C-terminal 85.5 5.3 0.00012 29.9 7.2 57 88-144 3-64 (191)
118 cd08347 PcpA_C_like C-terminal 85.2 8.9 0.00019 27.7 8.1 51 88-144 1-54 (157)
119 PLN02367 lactoylglutathione ly 84.9 5 0.00011 31.3 6.9 54 17-71 168-223 (233)
120 COG3865 Uncharacterized protei 83.8 14 0.0003 26.6 9.0 99 24-141 11-122 (151)
121 cd07245 Glo_EDI_BRP_like_9 Thi 83.1 6.4 0.00014 25.5 6.2 53 89-145 1-54 (114)
122 cd07233 Glyoxalase_I Glyoxalas 83.0 10 0.00023 25.1 7.3 54 89-143 1-58 (121)
123 cd04895 ACT_ACR_1 ACT domain-c 82.5 5.8 0.00013 24.9 5.3 40 99-138 15-55 (72)
124 cd06587 Glo_EDI_BRP_like This 82.2 9.2 0.0002 24.3 6.7 52 91-146 1-53 (112)
125 cd07242 Glo_EDI_BRP_like_6 Thi 80.8 9.7 0.00021 25.7 6.6 52 88-145 1-56 (128)
126 PRK11478 putative lyase; Provi 80.0 13 0.00028 25.1 7.0 56 88-144 6-62 (129)
127 cd08360 MhqB_like_C C-terminal 79.7 8.5 0.00018 26.6 6.1 30 17-46 61-92 (134)
128 PLN03042 Lactoylglutathione ly 77.9 13 0.00028 27.9 6.8 55 17-72 120-176 (185)
129 cd07237 BphC1-RGP6_C_like C-te 76.8 24 0.00052 25.1 8.0 58 86-143 7-68 (154)
130 cd07263 Glo_EDI_BRP_like_16 Th 76.5 18 0.00038 23.6 6.8 51 91-143 1-54 (119)
131 cd08342 HPPD_N_like N-terminal 76.1 15 0.00032 25.4 6.5 51 89-143 1-52 (136)
132 cd07255 Glo_EDI_BRP_like_12 Th 73.0 25 0.00054 23.5 7.7 51 88-145 2-54 (125)
133 cd04897 ACT_ACR_3 ACT domain-c 72.3 17 0.00036 23.0 5.3 40 99-138 15-55 (75)
134 TIGR03081 metmalonyl_epim meth 72.2 21 0.00046 23.8 6.4 53 89-143 2-55 (128)
135 cd07257 THT_oxygenase_C The C- 71.2 24 0.00052 25.1 6.6 28 89-116 2-30 (153)
136 PF06185 YecM: YecM protein; 70.7 43 0.00093 25.2 8.2 73 17-96 33-113 (185)
137 cd04882 ACT_Bt0572_2 C-termina 69.7 11 0.00024 22.1 4.0 26 88-113 39-64 (65)
138 PRK10291 glyoxalase I; Provisi 68.0 32 0.0007 23.3 6.6 54 17-71 64-121 (129)
139 cd08364 FosX FosX, a fosfomyci 67.2 38 0.00082 23.2 6.8 30 87-116 3-33 (131)
140 cd07235 MRD Mitomycin C resist 65.6 28 0.0006 23.2 5.8 49 89-142 1-49 (122)
141 PRK11700 hypothetical protein; 65.6 56 0.0012 24.6 8.9 74 17-96 38-118 (187)
142 cd08344 MhqB_like_N N-terminal 64.9 13 0.00029 24.6 4.0 28 88-115 2-29 (112)
143 cd09014 BphC-JF8_C_like C-term 64.6 51 0.0011 23.8 7.6 30 87-116 5-35 (166)
144 cd08358 Glo_EDI_BRP_like_21 Th 62.2 51 0.0011 23.0 7.8 56 88-143 2-71 (127)
145 cd08348 BphC2-C3-RGP6_C_like T 61.6 48 0.001 22.5 7.2 51 89-144 2-55 (134)
146 cd07256 HPCD_C_class_II C-term 60.5 60 0.0013 23.2 7.7 28 88-115 3-31 (161)
147 cd07268 Glo_EDI_BRP_like_4 Thi 60.1 63 0.0014 23.4 9.9 72 19-96 2-80 (149)
148 cd04883 ACT_AcuB C-terminal AC 57.7 29 0.00063 20.9 4.3 29 88-116 41-71 (72)
149 PF12681 Glyoxalase_2: Glyoxal 57.5 41 0.00089 21.6 5.4 31 16-47 54-84 (108)
150 COG1759 5-formaminoimidazole-4 55.9 20 0.00043 29.4 4.0 89 97-185 173-270 (361)
151 cd07243 2_3_CTD_C C-terminal d 54.0 74 0.0016 22.3 6.9 30 87-116 5-35 (143)
152 TIGR00068 glyox_I lactoylgluta 54.0 60 0.0013 22.7 6.1 54 17-71 85-142 (150)
153 cd07267 THT_Oxygenase_N N-term 53.5 25 0.00054 23.3 3.8 28 88-115 3-30 (113)
154 cd07265 2_3_CTD_N N-terminal d 52.4 27 0.00059 23.3 3.9 30 87-116 3-33 (122)
155 cd08343 ED_TypeI_classII_C C-t 52.3 72 0.0016 21.6 7.1 52 90-143 1-54 (131)
156 cd07258 PpCmtC_C C-terminal do 51.8 73 0.0016 22.3 6.1 31 16-46 54-86 (141)
157 cd07252 BphC1-RGP6_N_like N-te 50.8 72 0.0016 21.2 6.5 29 88-116 2-31 (120)
158 cd07253 Glo_EDI_BRP_like_2 Thi 48.7 33 0.00072 22.5 3.9 29 88-116 3-32 (125)
159 cd08359 Glo_EDI_BRP_like_22 Th 46.7 81 0.0018 20.6 6.0 26 21-47 69-94 (119)
160 COG4747 ACT domain-containing 46.5 23 0.00051 24.6 2.7 84 19-115 42-135 (142)
161 PF02208 Sorb: Sorbin homologo 46.4 8.6 0.00019 21.7 0.5 27 14-40 7-33 (47)
162 PF07063 DUF1338: Domain of un 45.3 54 0.0012 26.7 5.0 29 86-114 182-216 (302)
163 PF03975 CheD: CheD chemotacti 44.2 53 0.0012 22.4 4.3 40 97-138 64-103 (114)
164 cd04906 ACT_ThrD-I_1 First of 42.5 54 0.0012 20.8 3.9 27 89-115 41-71 (85)
165 KOG4657 Uncharacterized conser 40.6 25 0.00054 27.2 2.3 22 27-48 145-166 (246)
166 PRK13498 chemoreceptor glutami 38.0 79 0.0017 23.3 4.6 40 96-137 114-153 (167)
167 PRK13490 chemoreceptor glutami 36.1 89 0.0019 22.9 4.6 39 97-137 112-150 (162)
168 PRK13495 chemoreceptor glutami 35.2 94 0.002 22.7 4.6 40 97-138 105-144 (159)
169 PRK13494 chemoreceptor glutami 33.4 1.1E+02 0.0023 22.6 4.6 39 97-137 114-152 (163)
170 PRK06724 hypothetical protein; 33.2 1.6E+02 0.0035 20.2 6.4 31 17-47 62-94 (128)
171 PF08445 FR47: FR47-like prote 31.8 1.1E+02 0.0023 19.5 4.0 23 24-47 60-82 (86)
172 KOG0182 20S proteasome, regula 31.8 53 0.0011 25.3 2.8 57 126-186 149-210 (246)
173 PRK03467 hypothetical protein; 31.7 2E+02 0.0043 20.7 5.9 48 97-144 5-52 (144)
174 PRK13497 chemoreceptor glutami 31.4 1.2E+02 0.0026 22.8 4.7 40 97-138 112-151 (184)
175 cd04908 ACT_Bt0572_1 N-termina 31.3 1.1E+02 0.0024 18.1 3.8 24 90-113 41-64 (66)
176 PRK13493 chemoreceptor glutami 29.8 1.2E+02 0.0026 23.4 4.5 42 97-141 139-180 (213)
177 TIGR00318 cyaB adenylyl cyclas 29.7 78 0.0017 23.3 3.5 24 92-115 6-29 (174)
178 PF13176 TPR_7: Tetratricopept 29.6 43 0.00093 17.3 1.5 18 25-42 11-28 (36)
179 PRK13488 chemoreceptor glutami 29.3 1.4E+02 0.003 21.8 4.6 39 97-137 107-145 (157)
180 COG3603 Uncharacterized conser 29.1 65 0.0014 22.4 2.7 25 90-114 103-127 (128)
181 PRK13491 chemoreceptor glutami 28.9 1.4E+02 0.0029 22.8 4.6 41 97-139 115-155 (199)
182 PF07494 Reg_prop: Two compone 28.5 74 0.0016 15.0 2.1 12 127-138 8-19 (24)
183 cd04885 ACT_ThrD-I Tandem C-te 28.0 79 0.0017 19.0 2.8 26 88-113 38-66 (68)
184 PF09940 DUF2172: Domain of un 27.2 55 0.0012 27.5 2.4 37 110-147 9-45 (386)
185 PRK06704 RNA polymerase factor 27.2 58 0.0013 25.2 2.5 42 93-139 183-224 (228)
186 PRK13487 chemoreceptor glutami 26.4 1.6E+02 0.0034 22.5 4.6 39 97-137 127-165 (201)
187 PRK10234 DNA-binding transcrip 26.3 93 0.002 21.6 3.1 49 96-144 24-72 (118)
188 PF00379 Chitin_bind_4: Insect 26.1 1.4E+02 0.0029 17.0 3.5 18 127-144 30-47 (52)
189 PF06923 GutM: Glucitol operon 25.9 2.2E+02 0.0047 19.3 5.2 48 97-144 24-71 (109)
190 PRK14707 hypothetical protein; 24.7 1.5E+02 0.0034 31.0 5.1 47 98-144 2357-2407(2710)
191 COG5397 Uncharacterized conser 23.9 67 0.0014 25.9 2.2 52 91-144 160-212 (349)
192 COG4747 ACT domain-containing 23.8 2.1E+02 0.0046 20.0 4.4 29 87-115 40-68 (142)
193 PHA02103 hypothetical protein 23.3 2.5E+02 0.0053 19.1 4.5 39 103-141 92-134 (135)
194 COG3349 Uncharacterized conser 23.2 1.6E+02 0.0034 25.8 4.6 38 102-140 15-52 (485)
195 COG3254 Uncharacterized conser 23.2 2.4E+02 0.0052 19.1 4.5 34 99-144 26-59 (105)
196 COG1871 CheD Chemotaxis protei 23.1 1.9E+02 0.0041 21.3 4.2 41 96-138 113-153 (164)
197 cd04896 ACT_ACR-like_3 ACT dom 23.1 2E+02 0.0044 18.0 5.0 38 99-137 14-54 (75)
198 PRK13489 chemoreceptor glutami 22.8 2E+02 0.0042 22.6 4.6 42 97-141 125-166 (233)
199 cd04927 ACT_ACR-like_2 Second 22.2 2E+02 0.0044 17.7 5.9 38 99-136 14-53 (76)
200 cd04909 ACT_PDH-BS C-terminal 22.1 97 0.0021 18.3 2.4 23 90-112 43-68 (69)
201 PF12687 DUF3801: Protein of u 21.6 2.9E+02 0.0063 21.0 5.3 48 87-134 32-79 (204)
202 PTZ00330 acetyltransferase; Pr 21.5 1.3E+02 0.0029 20.4 3.3 24 21-47 118-141 (147)
203 PRK13688 hypothetical protein; 21.2 1.4E+02 0.0029 21.6 3.3 17 31-48 118-134 (156)
204 COG2844 GlnD UTP:GlnB (protein 20.9 3.6E+02 0.0079 25.4 6.4 52 88-139 683-740 (867)
205 PHA00450 host dGTPase inhibito 20.6 2.5E+02 0.0054 18.1 4.4 45 98-142 11-57 (85)
206 PF02952 Fucose_iso_C: L-fucos 20.3 1.5E+02 0.0032 20.8 3.3 27 19-45 113-139 (142)
207 PRK10140 putative acetyltransf 20.1 1.7E+02 0.0037 20.2 3.7 30 18-48 112-142 (162)
No 1
>PRK11478 putative lyase; Provisional
Probab=99.87 E-value=1.4e-20 Score=132.99 Aligned_cols=124 Identities=27% Similarity=0.387 Sum_probs=88.5
Q ss_pred cCcceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCC---ccceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCce
Q 029568 14 LPLLSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSF---NFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDN 90 (191)
Q Consensus 14 ~~i~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~---~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~ 90 (191)
+++.+++|++|.|+|++++.+||+++|||++....... .+...+...++..++++....+.. ........+..
T Consensus 2 ~~i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~----~~~~~~~~g~~ 77 (129)
T PRK11478 2 LGLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGDLALNGQYVIELFSFPFPPE----RPSRPEACGLR 77 (129)
T ss_pred CCcceecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccceeeEecCCCcEEEEEEecCCCC----CCCCCCCCcee
Confidence 57889999999999999999999999999986432111 111122223445677766443221 11122345678
Q ss_pred EEEEEeCCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEe
Q 029568 91 HISFQCTDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCN 142 (191)
Q Consensus 91 hi~f~v~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~ 142 (191)
||+|.|+|+++++++|+++|+++..... ...+|.+.+||+|||||.|||.+
T Consensus 78 hi~f~v~d~~~~~~~l~~~G~~~~~~~~-~~~~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 78 HLAFSVDDIDAAVAHLESHNVKCEAIRV-DPYTQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred EEEEEeCCHHHHHHHHHHcCCeeecccc-CCCCCCEEEEEECCCCCEEEEEe
Confidence 9999999999999999999999764332 22245688999999999999986
No 2
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.86 E-value=2.3e-20 Score=134.12 Aligned_cols=126 Identities=18% Similarity=0.232 Sum_probs=90.0
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCC--------Cc-----cceeEEe--eCCcEEEEEecCCCCCCCCCC
Q 029568 16 LLSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSS--------FN-----FNGAWLY--NYGIGIHLIENPSIDDFDTVT 80 (191)
Q Consensus 16 i~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~--------~~-----~~~~~~~--~~~~~l~l~~~~~~~~~~~~~ 80 (191)
+.+++|++|.|+|++++++||++ |||++..+... .+ ....++. .++..++|+....+.......
T Consensus 1 ~~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~~~~~~~~~~ 79 (142)
T cd08353 1 VSRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFHHPAVIADHR 79 (142)
T ss_pred CceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEecCCCCcCcCC
Confidence 46899999999999999999998 99988655321 00 0112222 234578888754332110000
Q ss_pred CCCCCCCCceEEEEEeCCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEee
Q 029568 81 EPRPINPKDNHISFQCTDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNC 143 (191)
Q Consensus 81 ~~~~~~~g~~hi~f~v~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~ 143 (191)
.......++.||||.|+|+++++++|+++|+++...+... +++.+.+|++||||+.|||++.
T Consensus 80 ~~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~-~~~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 80 PAPVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQY-ENSYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceec-CCCeEEEEEECCCCCEEEeeec
Confidence 1122345788999999999999999999999988765433 3567899999999999999974
No 3
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.86 E-value=1.7e-20 Score=134.69 Aligned_cols=131 Identities=24% Similarity=0.422 Sum_probs=98.5
Q ss_pred CcceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCceEEEE
Q 029568 15 PLLSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDNHISF 94 (191)
Q Consensus 15 ~i~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f 94 (191)
||.+++|+.|.|+|++++.+||+++||+++..+.. ...++..++..+.+...+. .+ ......+.+|++|
T Consensus 1 ~i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~----~~~~~~~~g~~l~l~~~~~------~~-~~~~~~~~~hiaf 69 (139)
T PRK04101 1 MLKGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR----KTAYFDLNGLWIALNEEKD------IP-RNEIHQSYTHIAF 69 (139)
T ss_pred CCCcEEEEEEEecCHHHHHHHHHhccCCEEEeecC----eeEEEecCCeEEEeeccCC------CC-CccCCCCeeEEEE
Confidence 57889999999999999999999999999986543 3455655666665543221 11 1122446789999
Q ss_pred EeC--CHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeecCCCCcccccCCccccchhhhhhhh
Q 029568 95 QCT--DVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCENIPIIPLYSCSFKPRMGSFKRAAA 168 (191)
Q Consensus 95 ~v~--dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 168 (191)
.++ |+++++++++++|+++...+.... ++.+++|++|||||+|||.+ +.+..|++.+.++.|
T Consensus 70 ~v~~~dv~~~~~~l~~~G~~i~~~~~~~~-~~~~~~~~~DPdGn~iEl~~-----------~~~~~~~~~~~~~~~ 133 (139)
T PRK04101 70 SIEEEDFDHWYQRLKENDVNILPGRERDE-RDKKSIYFTDPDGHKFEFHT-----------GTLQDRLNYYKEEKP 133 (139)
T ss_pred EecHHHHHHHHHHHHHCCceEcCCccccC-CCceEEEEECCCCCEEEEEe-----------CCHHHHHHHHhccCC
Confidence 996 999999999999999876554332 35689999999999999994 566667666666654
No 4
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.85 E-value=1.2e-19 Score=129.94 Aligned_cols=126 Identities=14% Similarity=0.094 Sum_probs=91.2
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCceEEEEEeCC
Q 029568 19 LNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDNHISFQCTD 98 (191)
Q Consensus 19 l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~v~d 98 (191)
++|++|.|+|++++++||+++|||++..+.........++..++..+.+......... ..........+..||+|.|+|
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~g~~~l~l~~~~~~~~~-~~~~~~~~~~g~~hia~~V~D 79 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSEDKASYLLRQGDINFVLNSPLNSFAP-VADFLEKHGDGVCDVAFRVDD 79 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCCceEEEEEEcCCEEEEEecCCCCCCc-hHHHHHhcCCceEEEEEEeCC
Confidence 5899999999999999999999999987644211122333344455655443221100 000001234578899999999
Q ss_pred HHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeecCC
Q 029568 99 VALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCENI 146 (191)
Q Consensus 99 vd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~~~ 146 (191)
+++++++|+++|++++..|.. ..++.+.++++||||++|||++...+
T Consensus 80 vda~~~~l~~~G~~v~~~p~~-~~~~~~~~~i~dp~G~~ie~~~~~~~ 126 (136)
T cd08342 80 AAAAYERAVARGAKPVQEPVE-EPGELKIAAIKGYGDSLHTLVDRKGY 126 (136)
T ss_pred HHHHHHHHHHcCCeEccCcee-cCCeEEEEEEeccCCcEEEEEecCCC
Confidence 999999999999999988765 34678999999999999999997655
No 5
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.85 E-value=7.2e-20 Score=130.23 Aligned_cols=126 Identities=19% Similarity=0.366 Sum_probs=90.1
Q ss_pred CcceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCcc---ceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCceE
Q 029568 15 PLLSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNF---NGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDNH 91 (191)
Q Consensus 15 ~i~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~---~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~h 91 (191)
||.+++|++|.|+|++++++||+++||+....+.+...+ ...++..++..+.+..... ....+.+|
T Consensus 1 mi~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~-----------~~~~~~~H 69 (131)
T cd08364 1 MIEGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIGGLWIAIMEGDS-----------LQERTYNH 69 (131)
T ss_pred CcccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEcCCeEEEEecCCC-----------CCCCCceE
Confidence 478899999999999999999999999988765432111 1123334455565543221 12336899
Q ss_pred EEEEeC--CHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeecCCCCcccccCCccccchhh
Q 029568 92 ISFQCT--DVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCENIPIIPLYSCSFKPRMGSF 163 (191)
Q Consensus 92 i~f~v~--dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~r~~~~ 163 (191)
|+|.|+ ++++++++|+++|+++........+ +.+++||+|||||.|||. .+.+..|+.+|
T Consensus 70 iaf~v~~~~ld~~~~~l~~~gv~~~~~~~~~~~-~g~~~yf~DPdG~~iEl~-----------~~~~~~~~~~~ 131 (131)
T cd08364 70 IAFKISDSDVDEYTERIKALGVEMKPPRPRVQG-EGRSIYFYDFDNHLFELH-----------TGTLEERLARY 131 (131)
T ss_pred EEEEcCHHHHHHHHHHHHHCCCEEecCCccccC-CceEEEEECCCCCEEEEe-----------cCCHHHHHhcC
Confidence 999997 7999999999999987543211122 358999999999999999 45666666543
No 6
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.84 E-value=2.1e-19 Score=125.53 Aligned_cols=122 Identities=22% Similarity=0.319 Sum_probs=90.4
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCceEEEEE
Q 029568 16 LLSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDNHISFQ 95 (191)
Q Consensus 16 i~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~ 95 (191)
|++++|+.|.|+|++++.+||+++||++.....+.. ...++..++..+++....... .+.......+..|++|.
T Consensus 1 ~~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~hi~~~ 74 (125)
T cd07253 1 IKRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV--GRKALRFGSQKINLHPVGGEF----EPAAGSPGPGSDDLCLI 74 (125)
T ss_pred CcccceEEEEecCHHHHHHHHHHHhCceeecccccC--CceEEEeCCEEEEEecCCCcc----CcCccCCCCCCceEEEE
Confidence 468999999999999999999999999998764311 234454555566665543221 12222345678999999
Q ss_pred eC-CHHHHHHHHHhCCCeEEeeeeecCC--ceeEEEEEECCCCCEEEEEee
Q 029568 96 CT-DVALVKRRLEDMGMRYVTAVVEDDG--TRVDQVFFHDPDGYMIELCNC 143 (191)
Q Consensus 96 v~-dvd~~~~~l~~~G~~~~~~~~~~~g--~g~~~~~~~DPdG~~iEl~~~ 143 (191)
++ ++++++++++++|+++...+....+ ++.+++|++|||||+||++++
T Consensus 75 ~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 125 (125)
T cd07253 75 TEPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSNY 125 (125)
T ss_pred ecccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeeeC
Confidence 96 4999999999999998776654322 235789999999999999874
No 7
>PLN02367 lactoylglutathione lyase
Probab=99.84 E-value=2.6e-19 Score=137.18 Aligned_cols=126 Identities=24% Similarity=0.364 Sum_probs=93.0
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecC--CCccceeEEe-------------------eCCcEEEEEecCCCCC
Q 029568 17 LSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPS--SFNFNGAWLY-------------------NYGIGIHLIENPSIDD 75 (191)
Q Consensus 17 ~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~--~~~~~~~~~~-------------------~~~~~l~l~~~~~~~~ 75 (191)
-.+.|+.|.|.|++++++||+++|||++..+.. ...+...++. ..+..++|.+..+.+.
T Consensus 74 ~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e~ 153 (233)
T PLN02367 74 YIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTES 153 (233)
T ss_pred cEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCCc
Confidence 468999999999999999999999999987643 2233444442 1234788887665431
Q ss_pred ---CC-CCCCCCCCCCCceEEEEEeCCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeecC
Q 029568 76 ---FD-TVTEPRPINPKDNHISFQCTDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCEN 145 (191)
Q Consensus 76 ---~~-~~~~~~~~~~g~~hi~f~v~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~~ 145 (191)
+. +.... ....|++||+|.|+|+++++++|+++|+++...|... .+.+.+|++|||||+|||++...
T Consensus 154 ~~~~~~y~~gn-~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g--~~~riaFIkDPDGn~IEL~e~~~ 224 (233)
T PLN02367 154 DPDFKGYHNGN-SEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDG--KMKGIAFIKDPDGYWIEIFDLKT 224 (233)
T ss_pred cccchhcccCC-CCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccC--CceEEEEEECCCCCEEEEEeccc
Confidence 11 11111 2236899999999999999999999999998766432 23467899999999999998653
No 8
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.84 E-value=7.5e-20 Score=130.16 Aligned_cols=127 Identities=22% Similarity=0.396 Sum_probs=94.8
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCceEEEEEeC-
Q 029568 19 LNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDNHISFQCT- 97 (191)
Q Consensus 19 l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~v~- 97 (191)
|+||.|.|+|++++.+||+++||+++....+ ...++..++..+.+...+. .+. .....+.+||+|.|+
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~----~~~~~~~~~~~l~l~~~~~------~~~-~~~~~~~~hiaf~v~~ 69 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGE----KTAYFTIGGTWLALNEEPD------IPR-NEIRQSYTHIAFTIED 69 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCC----ccceEeeCceEEEEEccCC------CCc-CCcCccceEEEEEecH
Confidence 5799999999999999999999999876543 2345556666666644332 111 122457889999996
Q ss_pred -CHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeecCCCCcccccCCccccchhhhhhhh
Q 029568 98 -DVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCENIPIIPLYSCSFKPRMGSFKRAAA 168 (191)
Q Consensus 98 -dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 168 (191)
|+++++++++++|+++...+.... ++.+.+|++|||||+|||.+ .....|++.|++..|
T Consensus 70 ~dld~~~~~l~~~G~~~~~~~~~~~-~~~~~~~f~DPdG~~iEl~~-----------~~~~~~~~~~~~~~~ 129 (131)
T cd08363 70 SEFDAFYTRLKEAGVNILPGRKRDV-RDRKSIYFTDPDGHKLEVHT-----------GTLAERLAYYKKTKP 129 (131)
T ss_pred HHHHHHHHHHHHcCCcccCCCcccc-CcceEEEEECCCCCEEEEec-----------CcHHHHHHHHhccCC
Confidence 599999999999999765443322 35589999999999999994 567777777766553
No 9
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.83 E-value=3.5e-19 Score=128.61 Aligned_cols=118 Identities=22% Similarity=0.205 Sum_probs=82.9
Q ss_pred cCcceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecC--CCc-cceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCce
Q 029568 14 LPLLSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPS--SFN-FNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDN 90 (191)
Q Consensus 14 ~~i~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~--~~~-~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~ 90 (191)
+++.+++|++|.|+|++++.+||+++|||++..+.. ... ....|+..+.. .+.+... + ...++++
T Consensus 2 ~~~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~-~h~~~~~--------~---~~~~~~~ 69 (143)
T cd07243 2 IGAHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNK-PHDIAFV--------G---GPDGKLH 69 (143)
T ss_pred CCCceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCC-cceEEEe--------c---CCCCCce
Confidence 357789999999999999999999999999865521 111 12334433221 1111111 0 1135789
Q ss_pred EEEEEeCCHHH---HHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEee
Q 029568 91 HISFQCTDVAL---VKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNC 143 (191)
Q Consensus 91 hi~f~v~dvd~---~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~ 143 (191)
|+||.|+|+++ +.++|+++|+++...|.....++.+++||.|||||+|||.+.
T Consensus 70 Hiaf~v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 70 HFSFFLESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 99999988777 678999999998766653332345789999999999999864
No 10
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.83 E-value=5e-19 Score=123.57 Aligned_cols=122 Identities=26% Similarity=0.416 Sum_probs=86.8
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCc-cc-eeEEe-eCCcEEEEEecCCCCCCCCCCCCCCCCCCceEE
Q 029568 16 LLSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFN-FN-GAWLY-NYGIGIHLIENPSIDDFDTVTEPRPINPKDNHI 92 (191)
Q Consensus 16 i~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~-~~-~~~~~-~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi 92 (191)
+.+++|++|.|+|++++.+||+++||++........+ .. ...+. .++..++++....... ........+..|+
T Consensus 1 ~~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~----~~~~~~~~g~~h~ 76 (125)
T cd08352 1 LFGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNGGYQLELFSFPNPPE----RPSYPEACGLRHL 76 (125)
T ss_pred CCccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCCCcEEEEEEcCCCCC----CCCCCcCCCceEE
Confidence 3579999999999999999999999999876532111 01 11122 2445677665443211 1111234578899
Q ss_pred EEEeCCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEe
Q 029568 93 SFQCTDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCN 142 (191)
Q Consensus 93 ~f~v~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~ 142 (191)
+|.|+|+++++++++++|+.+...+.. ..++.+.+|++||+||+|||++
T Consensus 77 ~~~v~d~~~~~~~l~~~G~~~~~~~~~-~~~~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 77 AFSVEDIEAAVKHLKAKGVEVEPIRVD-EFTGKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred EEEeCCHHHHHHHHHHcCCcccccccc-CCCceEEEEEECCCCCEEEecC
Confidence 999999999999999999997765422 2345678999999999999974
No 11
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.82 E-value=6.1e-19 Score=123.38 Aligned_cols=119 Identities=19% Similarity=0.285 Sum_probs=85.1
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEeeec--CCCccceeEEee-CCcEEEEEecCCCCCCCCCCCCCCCCCCceEEEE
Q 029568 18 SLNHVSLLCRSVWDSVRFYEDVLGFVLIKRP--SSFNFNGAWLYN-YGIGIHLIENPSIDDFDTVTEPRPINPKDNHISF 94 (191)
Q Consensus 18 ~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~--~~~~~~~~~~~~-~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f 94 (191)
+++|++|.|+|++++.+||+++|||+..... +...+...|+.. ++..++++..+.... ........+..||+|
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~g~~hi~f 76 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDDGARLELMTRPDIAP----SPNEGERTGWAHLAF 76 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCCCcEEEEEcCcccCC----CcccCCCCceEEEEE
Confidence 4789999999999999999999999976432 212233445543 345677776443210 101233457899999
Q ss_pred EeC---CHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEE
Q 029568 95 QCT---DVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELC 141 (191)
Q Consensus 95 ~v~---dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~ 141 (191)
.|+ |+++++++|+++|+++...+... ++|.+.++++|||||.|||.
T Consensus 77 ~v~~~~~v~~~~~~l~~~g~~~~~~~~~~-~~g~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 77 SVGSKEAVDELTERLRADGYLIIGEPRTT-GDGYYESVILDPEGNRIEIT 125 (125)
T ss_pred ECCCHHHHHHHHHHHHHCCCEEEeCceec-CCCeEEEEEECCCCCEEEeC
Confidence 995 58999999999999988755432 34556778999999999984
No 12
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.82 E-value=8.1e-19 Score=129.29 Aligned_cols=127 Identities=23% Similarity=0.315 Sum_probs=88.1
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeeec----CC----------------CccceeEEee-CCcEEEEEecCCCCC
Q 029568 17 LSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRP----SS----------------FNFNGAWLYN-YGIGIHLIENPSIDD 75 (191)
Q Consensus 17 ~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~----~~----------------~~~~~~~~~~-~~~~l~l~~~~~~~~ 75 (191)
++++||+|.|+|+++|++||+++|||++..+. .. ..+..+++.. ++..++++...++..
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~~~~~ 82 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFKNQEN 82 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEeccCCCC
Confidence 57999999999999999999999999886421 10 0012233332 345688888765321
Q ss_pred CCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhCCCeEEeeeee-c-CC-ceeEEEEEECCCCCEEEEEeecC
Q 029568 76 FDTVTEPRPINPKDNHISFQCTDVALVKRRLEDMGMRYVTAVVE-D-DG-TRVDQVFFHDPDGYMIELCNCEN 145 (191)
Q Consensus 76 ~~~~~~~~~~~~g~~hi~f~v~dvd~~~~~l~~~G~~~~~~~~~-~-~g-~g~~~~~~~DPdG~~iEl~~~~~ 145 (191)
. .........|..|++|.|+|+++++++|+++|+.+...+.. . .+ .+.+.+|++|||||+|||+++..
T Consensus 83 ~--~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~ 153 (162)
T TIGR03645 83 P--EDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSHSY 153 (162)
T ss_pred C--CcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEcCh
Confidence 1 11111124689999999999999999999999875433211 1 11 13478999999999999998753
No 13
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.82 E-value=1.3e-18 Score=130.43 Aligned_cols=128 Identities=25% Similarity=0.359 Sum_probs=91.1
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecC--CCccceeEEe-------------------eCCcEEEEEecCCCCC
Q 029568 17 LSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPS--SFNFNGAWLY-------------------NYGIGIHLIENPSIDD 75 (191)
Q Consensus 17 ~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~--~~~~~~~~~~-------------------~~~~~l~l~~~~~~~~ 75 (191)
-++.|++|.|.|+++|++||+++|||++..+.. ...+...++. ..+..++|+.......
T Consensus 26 ~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~~~ 105 (185)
T PLN03042 26 YIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGTES 105 (185)
T ss_pred cEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCCcc
Confidence 578999999999999999999999999987742 2223333332 1235788887543221
Q ss_pred C---CCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeecCC
Q 029568 76 F---DTVTEPRPINPKDNHISFQCTDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCENI 146 (191)
Q Consensus 76 ~---~~~~~~~~~~~g~~hi~f~v~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~~~ 146 (191)
. ...........|+.||+|.|+|+++++++|+++|+++...+.. +.+.+.+|++||||++|||++..+.
T Consensus 106 ~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~--~~~~~~~fi~DPdG~~IEl~e~~~~ 177 (185)
T PLN03042 106 DPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDD--GKMKGLAFIKDPDGYWIEIFDLKRI 177 (185)
T ss_pred cccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCcc--CCceeEEEEECCCCCEEEEEECCCc
Confidence 0 0001111123589999999999999999999999998865532 2234678899999999999987543
No 14
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.82 E-value=1.2e-18 Score=127.81 Aligned_cols=116 Identities=24% Similarity=0.399 Sum_probs=85.7
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeC---CcEEEEEecCCCCCCCCCCCCCCCCCCceEEEE
Q 029568 18 SLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNY---GIGIHLIENPSIDDFDTVTEPRPINPKDNHISF 94 (191)
Q Consensus 18 ~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f 94 (191)
+++||+|.|+|++++.+||+++|||++..+... ...+...+ +..+.+...... ........+.+||+|
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~~---~~~~~~~~~~~~~~l~l~~~~~~------~~~~~~~~~l~Hiaf 71 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEGD---RVRLEEGGGGPGAVVDVLEEPDQ------PRGRPGAGTVHHVAF 71 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeCC---EEEEEecCCCCCCEEEEEeCCCC------CCCcccCCceEEEEE
Confidence 479999999999999999999999999876441 22333332 566777664321 111223456889999
Q ss_pred EeCC---HHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeecC
Q 029568 95 QCTD---VALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCEN 145 (191)
Q Consensus 95 ~v~d---vd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~~ 145 (191)
.|+| +++++++|++.|+++.. +... + +.+++|++|||||.|||+++.+
T Consensus 72 ~v~d~~dvd~~~~~L~~~Gv~~~~-~~~~-~-~~~s~yf~DPdG~~iEl~~~~~ 122 (157)
T cd08347 72 RVPDDEELEAWKERLEALGLPVSG-IVDR-F-YFKSLYFREPGGILFEIATDGP 122 (157)
T ss_pred ECCCHHHHHHHHHHHHHCCCCccc-cccc-c-cEEEEEEECCCCcEEEEEECCC
Confidence 9987 99999999999998543 3222 2 3478999999999999999753
No 15
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.81 E-value=2.2e-18 Score=120.72 Aligned_cols=114 Identities=18% Similarity=0.267 Sum_probs=82.0
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCC--cEEEEEecCCCCCCCCCCCCCCCCCCceEEE
Q 029568 16 LLSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYG--IGIHLIENPSIDDFDTVTEPRPINPKDNHIS 93 (191)
Q Consensus 16 i~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~--~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~ 93 (191)
+++++|+.|.|+|+++|.+||+++|||++....+. ...++...+ ....+.... ....+..|++
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~------------~~~~~~~hia 66 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDDQ---GRVYLKAWDEFDHHSIVLRE------------ADTAGLDFMG 66 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecCC---ceEEEEccCCCcccEEEecc------------CCCCCeeEEE
Confidence 67899999999999999999999999998766421 234443321 111111111 1134678999
Q ss_pred EEeC---CHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeec
Q 029568 94 FQCT---DVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCE 144 (191)
Q Consensus 94 f~v~---dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~ 144 (191)
|.|. |+++++++++++|+++...+........+++||+|||||+|||.+..
T Consensus 67 f~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 120 (122)
T cd07265 67 FKVLDDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADK 120 (122)
T ss_pred EEeCCHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEec
Confidence 9995 89999999999999987644322222236899999999999998764
No 16
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.80 E-value=1.8e-18 Score=118.39 Aligned_cols=113 Identities=40% Similarity=0.607 Sum_probs=86.2
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCCc-EEEEEecCCCCCCCCCCCCCCCCCCceEEEEEeC
Q 029568 19 LNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYGI-GIHLIENPSIDDFDTVTEPRPINPKDNHISFQCT 97 (191)
Q Consensus 19 l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~-~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~v~ 97 (191)
++|++|.|+|++++.+||+++||++...+... .....|+..++. .+++....... .......+..|++|.|+
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~-~~~~~~~~~~~~~~i~l~~~~~~~------~~~~~~~~~~~~~~~v~ 73 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPF-LFPGAWLYAGDGPQLHLIEEDPPD------ALPEGPGRDDHIAFRVD 73 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCC-CCCceEEEeCCCcEEEEEecCCCc------cccCCCcccceEEEEeC
Confidence 58999999999999999999999998765431 124466655554 67777655321 11123456789999999
Q ss_pred CHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEE
Q 029568 98 DVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIEL 140 (191)
Q Consensus 98 dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl 140 (191)
|+++++++++++|+++...+.. .++.+++++.||+|++|||
T Consensus 74 d~~~~~~~l~~~g~~~~~~~~~--~~~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 74 DLDAFRARLKAAGVPYTESDVP--GDGVRQLFVRDPDGNRIEL 114 (114)
T ss_pred CHHHHHHHHHHcCCCcccccCC--CCCccEEEEECCCCCEEeC
Confidence 9999999999999998776533 3456889999999999996
No 17
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.80 E-value=3.7e-18 Score=119.30 Aligned_cols=118 Identities=19% Similarity=0.245 Sum_probs=81.0
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCceEEEEEe
Q 029568 17 LSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDNHISFQC 96 (191)
Q Consensus 17 ~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~v 96 (191)
+++.|+.|.|.|+++|.+||+++||+++....+ ... ....+..+.+....... . .........+..|++|.|
T Consensus 1 ~~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~-~--~~~~~~~~~~~~~l~~~v 72 (120)
T cd09011 1 MKFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFG----ENV-TFEGGFALQEGYSWLEG-I--SKADIIEKSNNFELYFEE 72 (120)
T ss_pred CEEEEEEEEECCHHHHHHHHHHhcCCEEeeccC----ceE-EEeccceeccchhhhcc-C--CcccccccCCceEEEEEe
Confidence 378899999999999999999999999875432 111 11222222221111000 0 011112234457999999
Q ss_pred CCHHHHHHHHHhCCC-eEEeeeeecCCceeEEEEEECCCCCEEEEEee
Q 029568 97 TDVALVKRRLEDMGM-RYVTAVVEDDGTRVDQVFFHDPDGYMIELCNC 143 (191)
Q Consensus 97 ~dvd~~~~~l~~~G~-~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~ 143 (191)
+|+++++++|+++|+ ++...+.. .++|.+.++++|||||+|||.+.
T Consensus 73 ~dvd~~~~~l~~~g~~~~~~~~~~-~~~g~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 73 EDFDAFLDKLKRYDNIEYVHPIKE-HPWGQRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred hhhHHHHHHHHhcCCcEEecCccc-CCCccEEEEEECCCCCEEEEecc
Confidence 999999999999985 66665544 44778999999999999999875
No 18
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.80 E-value=5.3e-18 Score=125.43 Aligned_cols=121 Identities=19% Similarity=0.213 Sum_probs=84.9
Q ss_pred cCcceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCC--CccceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCceE
Q 029568 14 LPLLSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSS--FNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDNH 91 (191)
Q Consensus 14 ~~i~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~--~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~h 91 (191)
|.|.+++|++|.|+|++++++||+++|||++...... ......|+...+....+...... .....+.+|
T Consensus 2 ~~i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~---------~~~~~~~~h 72 (166)
T cd09014 2 VGVRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNKVHDVAYTRDP---------AGARGRLHH 72 (166)
T ss_pred CCcceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCCceeEEEecCC---------CCCCCCceE
Confidence 6789999999999999999999999999998755211 11124555443322222211110 012346799
Q ss_pred EEEEeCC---HHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEee
Q 029568 92 ISFQCTD---VALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNC 143 (191)
Q Consensus 92 i~f~v~d---vd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~ 143 (191)
|+|.|+| +++++++|+++|+++...+......+.+++|++||+||+|||.+.
T Consensus 73 iaf~v~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 73 LAYALDTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred EEEECCCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 9999974 568889999999998765543322234578999999999999997
No 19
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.80 E-value=3.9e-18 Score=118.77 Aligned_cols=115 Identities=30% Similarity=0.405 Sum_probs=84.0
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCC--ccceeEEeeCC----cEEEEEecCCCCCCCCCCCCCCCCCCceEE
Q 029568 19 LNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSF--NFNGAWLYNYG----IGIHLIENPSIDDFDTVTEPRPINPKDNHI 92 (191)
Q Consensus 19 l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~--~~~~~~~~~~~----~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi 92 (191)
+.|++|.|+|++++.+||+++||++........ .....++...+ ..+++....... .......+..|+
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~i 74 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTE------EPYDNGNGFGHL 74 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCC------CCcCCCCCeEEE
Confidence 479999999999999999999999987653211 22334554433 455554432210 111223467899
Q ss_pred EEEeCCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEE
Q 029568 93 SFQCTDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELC 141 (191)
Q Consensus 93 ~f~v~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~ 141 (191)
+|.|+|+++++++++++|+++...+... .+.+.+|++||+||+|||+
T Consensus 75 ~~~v~did~~~~~l~~~G~~~~~~~~~~--~~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 75 AFAVDDVYAACERLEEMGVEVTKPPGDG--GMKGIAFIKDPDGYWIELI 121 (121)
T ss_pred EEEeCCHHHHHHHHHHCCCEEeeCCccC--CCceEEEEECCCCCEEEeC
Confidence 9999999999999999999988876543 3457889999999999985
No 20
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.80 E-value=5.6e-18 Score=123.15 Aligned_cols=126 Identities=27% Similarity=0.297 Sum_probs=87.6
Q ss_pred CcCcceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCc--cceeEEeeCC----cEEEEEecCCCCCCCCCCCCCCCC
Q 029568 13 ALPLLSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFN--FNGAWLYNYG----IGIHLIENPSIDDFDTVTEPRPIN 86 (191)
Q Consensus 13 ~~~i~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~--~~~~~~~~~~----~~l~l~~~~~~~~~~~~~~~~~~~ 86 (191)
.-+.++++|+.|.|+|++++.+||+++|||++..+..... ....++..++ ..+++...... ......
T Consensus 12 ~~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~ 84 (150)
T TIGR00068 12 KTKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGT-------EKYDLG 84 (150)
T ss_pred ccCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCC-------CcccCC
Confidence 4567899999999999999999999999999876532111 1122332221 12333221111 111223
Q ss_pred CCceEEEEEeCCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeecC
Q 029568 87 PKDNHISFQCTDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCEN 145 (191)
Q Consensus 87 ~g~~hi~f~v~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~~ 145 (191)
.+..|++|.|+|+++++++|.++|+++...+....+.+.+.+|++||+||+|||++...
T Consensus 85 ~g~~hi~f~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~ 143 (150)
T TIGR00068 85 NGFGHIAIGVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKS 143 (150)
T ss_pred CceeEEEEecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCc
Confidence 47889999999999999999999999876654333334578899999999999998653
No 21
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.79 E-value=5.2e-18 Score=117.46 Aligned_cols=110 Identities=18% Similarity=0.263 Sum_probs=82.4
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCceEEEEE
Q 029568 16 LLSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDNHISFQ 95 (191)
Q Consensus 16 i~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~ 95 (191)
|.+++|+.|.|+|+++|.+||++ |||+...+.+ ...|+..++....++.... ...++..|++|.
T Consensus 1 ~~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~----~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~af~ 64 (113)
T cd07267 1 LTDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD----DELYYRGYGTDPFVYVARK-----------GEKARFVGAAFE 64 (113)
T ss_pred CcEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC----CeEEEecCCCccEEEEccc-----------CCcCcccEEEEE
Confidence 57899999999999999999999 9999876643 3566654432222222111 113568899999
Q ss_pred eCCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEee
Q 029568 96 CTDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNC 143 (191)
Q Consensus 96 v~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~ 143 (191)
|+|.+++.+.+++.|......+. ..++.+.+||+|||||.|||+..
T Consensus 65 v~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 65 AASRADLEKAAALPGASVIDDLE--APGGGKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred ECCHHHHHHHHHcCCCeeecCCC--CCCCceEEEEECCCCCEEEEEec
Confidence 99999999999999998765432 22355789999999999999864
No 22
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.79 E-value=1.4e-18 Score=126.93 Aligned_cols=121 Identities=17% Similarity=0.143 Sum_probs=81.6
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCC---CccceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCceEEEE
Q 029568 18 SLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSS---FNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDNHISF 94 (191)
Q Consensus 18 ~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~---~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f 94 (191)
+++||+|.|+|++++++||+++|||++...... ......|+...+.. .+.. .+. ........++.+||||
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~~-~~l~~~~~~g~~Hiaf 73 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGE-EYVD-----HHT-LALAQGPESGVHHAAF 73 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCC-Cccc-----chH-HHHhcCCCCceeEEEE
Confidence 578999999999999999999999998754211 11223444332210 0000 000 0000112468999999
Q ss_pred EeCCHHHHH---HHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeecC
Q 029568 95 QCTDVALVK---RRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCEN 145 (191)
Q Consensus 95 ~v~dvd~~~---~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~~ 145 (191)
.|+|++++. ++|+++|+++...+.........++|++||+||+|||.+...
T Consensus 74 ~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~~ 127 (153)
T cd07257 74 EVHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDGD 127 (153)
T ss_pred EcCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCce
Confidence 999999986 999999999886654333223456899999999999997653
No 23
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.79 E-value=1.1e-17 Score=117.33 Aligned_cols=115 Identities=27% Similarity=0.387 Sum_probs=84.9
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCC--cEEEEEecCCCCCCCCCCCCCCCCCCceEEEE
Q 029568 17 LSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYG--IGIHLIENPSIDDFDTVTEPRPINPKDNHISF 94 (191)
Q Consensus 17 ~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~--~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f 94 (191)
++++|+.|.|+|++++.+||+++|||++....+ ...++..++ ..+.+...+.. ........+..|++|
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~----~~~~l~~~~~~~~l~l~~~~~~------~~~~~~~~~~~hi~f 70 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERTD----STAVLGTGGKRPLLVLEEDPDA------PPAPPGATGLYHFAI 70 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcCC----CEEEEecCCCeEEEEEEeCCCC------CcccCCCCcEEEEEE
Confidence 579999999999999999999999999987743 345555444 34445443321 111233456889999
Q ss_pred EeC---CHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeec
Q 029568 95 QCT---DVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCE 144 (191)
Q Consensus 95 ~v~---dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~ 144 (191)
.|. ++++++++++++|+++.... . .++ .+++|++|||||+|||.+..
T Consensus 71 ~v~~~~~v~~~~~~l~~~g~~~~~~~-~-~~~-~~~~~~~DPdG~~iEi~~~~ 120 (125)
T cd07255 71 LLPSRADLAAALRRLIELGIPLVGAS-D-HLV-SEALYLSDPEGNGIEIYADR 120 (125)
T ss_pred ECCCHHHHHHHHHHHHHcCCceeccc-c-ccc-eeEEEEECCCCCEEEEEEec
Confidence 995 59999999999999865432 2 222 37899999999999999764
No 24
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.79 E-value=4.1e-18 Score=120.03 Aligned_cols=113 Identities=22% Similarity=0.330 Sum_probs=82.4
Q ss_pred cCcceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCceEEE
Q 029568 14 LPLLSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDNHIS 93 (191)
Q Consensus 14 ~~i~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~ 93 (191)
.++.+++|+.|.|+|+++|.+||+++|||++..+.+ ...|+..++....+.-... .++..|++
T Consensus 2 ~~~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~----~~~~l~~~~~~~~i~l~~~-------------~~~~~~ia 64 (124)
T cd08361 2 IELQDIAYVRLGTRDLAGATRFATDILGLQVAERTA----KATYFRSDARDHTLVYIEG-------------DPAEQASG 64 (124)
T ss_pred ceEEEeeEEEEeeCCHHHHHHHHHhccCceeccCCC----CeEEEEcCCccEEEEEEeC-------------CCceEEEE
Confidence 467899999999999999999999999999876533 3556654432221211110 13468999
Q ss_pred EEeCC---HHHHHHHHHhCCCeEEeeeeecC--CceeEEEEEECCCCCEEEEEee
Q 029568 94 FQCTD---VALVKRRLEDMGMRYVTAVVEDD--GTRVDQVFFHDPDGYMIELCNC 143 (191)
Q Consensus 94 f~v~d---vd~~~~~l~~~G~~~~~~~~~~~--g~g~~~~~~~DPdG~~iEl~~~ 143 (191)
|.|++ +++++++++++|+++...+.... ..+.+++||+|||||.||+.+.
T Consensus 65 f~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~ 119 (124)
T cd08361 65 FELRDDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVR 119 (124)
T ss_pred EEECCHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEe
Confidence 99965 99999999999998766542111 1234678999999999999865
No 25
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.79 E-value=7.2e-18 Score=117.98 Aligned_cols=110 Identities=25% Similarity=0.347 Sum_probs=81.9
Q ss_pred cCcceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCC----cEEEEEecCCCCCCCCCCCCCCCCCCc
Q 029568 14 LPLLSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYG----IGIHLIENPSIDDFDTVTEPRPINPKD 89 (191)
Q Consensus 14 ~~i~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~----~~l~l~~~~~~~~~~~~~~~~~~~~g~ 89 (191)
|.+.+++|+.|.|+|++++.+||+++|||++..+.+ ...|+...+ ..+.+.. ....+.
T Consensus 2 ~~i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~----~~~~l~~~~~~~~~~~~l~~--------------~~~~~~ 63 (121)
T cd09013 2 FDIAHLAHVELLTPKPEESLWFFTDVLGLEETGREG----QSVYLRAWGDYEHHSLKLTE--------------SPEAGL 63 (121)
T ss_pred CCccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC----CeEEEEeccCCCccEEEEee--------------CCCCce
Confidence 567899999999999999999999999999987644 344554322 1222211 123478
Q ss_pred eEEEEEeC---CHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEee
Q 029568 90 NHISFQCT---DVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNC 143 (191)
Q Consensus 90 ~hi~f~v~---dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~ 143 (191)
+|++|.|+ ++++++++++++|+++...+.. .+ ....+|++|||||.||+...
T Consensus 64 ~h~af~v~~~~~v~~~~~~l~~~G~~~~~~~~~-~~-~~~~~~~~DPdG~~iEl~~~ 118 (121)
T cd09013 64 GHIAWRASSPEALERRVAALEASGLGIGWIEGD-PG-HGKAYRFRSPDGHPMELYWE 118 (121)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHcCCccccccCC-CC-CcceEEEECCCCCEEEEEEe
Confidence 99999995 6889999999999986432211 22 23678999999999999964
No 26
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.79 E-value=1.4e-18 Score=122.17 Aligned_cols=123 Identities=18% Similarity=0.245 Sum_probs=85.2
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEeeecC--CCccceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCceEEEEE
Q 029568 18 SLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPS--SFNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDNHISFQ 95 (191)
Q Consensus 18 ~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~--~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~ 95 (191)
+++|++|.|+|++++.+||+++||++...... .......++..++..++|......... ..........+..|++|.
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~-~~~~~~~~~~g~~~i~~~ 79 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGNTKVELLEPLGEDSP-IAKFLEKNGGGIHHIAIE 79 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCCEEEEEEecCCCCCh-HHHHHhcCCCceEEEEEE
Confidence 57899999999999999999999999875421 112233444445667777654222110 000001124577899999
Q ss_pred eCCHHHHHHHHHhCCCeEEee-eeecCCceeEEEEE--ECCCCCEEEEEe
Q 029568 96 CTDVALVKRRLEDMGMRYVTA-VVEDDGTRVDQVFF--HDPDGYMIELCN 142 (191)
Q Consensus 96 v~dvd~~~~~l~~~G~~~~~~-~~~~~g~g~~~~~~--~DPdG~~iEl~~ 142 (191)
|+|+++++++|+++|+++... +.. ..+|.+.+|+ +||||+.||+.+
T Consensus 80 v~di~~~~~~l~~~G~~~~~~~~~~-~~~g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 80 VDDIEAALETLKEKGVRLIDEEPRI-GAGGKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred cCCHHHHHHHHHHCCCcccCCCCcc-CCCCCEEEEecccccCcEEEEecC
Confidence 999999999999999998764 322 2245566677 799999999974
No 27
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.79 E-value=1e-17 Score=119.48 Aligned_cols=113 Identities=26% Similarity=0.287 Sum_probs=82.9
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCC----cEEEEEecCCCCCCCCCCCCCCCCCCceEE
Q 029568 17 LSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYG----IGIHLIENPSIDDFDTVTEPRPINPKDNHI 92 (191)
Q Consensus 17 ~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~----~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi 92 (191)
.+++|++|.|+|++++.+||+++||+++..+... ...|+...+ ..+.+...+ ....+++||
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~~---~~~~~~~~~~~~~~~i~l~~~~------------~~~~g~~hi 66 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFKG---RGAFLRAAGGGDHHNLFLIKTP------------APMAGFHHA 66 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEecC---cEEEEECCCCCCCcEEEEecCC------------CCCCcceEE
Confidence 5799999999999999999999999998765431 345654432 233332211 114689999
Q ss_pred EEEeCCHHHHH---HHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeec
Q 029568 93 SFQCTDVALVK---RRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCE 144 (191)
Q Consensus 93 ~f~v~dvd~~~---~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~ 144 (191)
+|.|+|++++. ++|+++|+++...+......+.+++|++||+|++|||....
T Consensus 67 af~v~d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~ 121 (134)
T cd08360 67 AFEVGDIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADM 121 (134)
T ss_pred EEEeCCHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEccc
Confidence 99998887766 59999999977554333322456799999999999999753
No 28
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.78 E-value=1.4e-17 Score=116.96 Aligned_cols=111 Identities=22% Similarity=0.356 Sum_probs=82.4
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEe-eCCcEEEEEecCCCCCCCCCCCCCCCCCCceEEEE
Q 029568 16 LLSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLY-NYGIGIHLIENPSIDDFDTVTEPRPINPKDNHISF 94 (191)
Q Consensus 16 i~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f 94 (191)
..+++|+.|.|+|+++|.+||+++||++.....+ ...++. ..+..+.+.... ...+..|++|
T Consensus 2 ~~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~~~~~~~~~~~~l~~~~~~-------------~~~~~~h~a~ 64 (123)
T cd08351 2 TVTLNHTIVPARDREASAEFYAEILGLPWAKPFG----PFAVVKLDNGVSLDFAQPD-------------GEIPPQHYAF 64 (123)
T ss_pred cceEeEEEEEcCCHHHHHHHHHHhcCCEeeeccC----CEEEEEcCCCcEEEEecCC-------------CCCCcceEEE
Confidence 4678999999999999999999999999876432 122232 233344443311 1234689999
Q ss_pred EeC--CHHHHHHHHHhCCCeEEeeeeec------CCceeEEEEEECCCCCEEEEEee
Q 029568 95 QCT--DVALVKRRLEDMGMRYVTAVVED------DGTRVDQVFFHDPDGYMIELCNC 143 (191)
Q Consensus 95 ~v~--dvd~~~~~l~~~G~~~~~~~~~~------~g~g~~~~~~~DPdG~~iEl~~~ 143 (191)
.|+ |+++++++|+++|+++...+... ..+|.+++||+|||||.|||+++
T Consensus 65 ~v~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 65 LVSEEEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITR 121 (123)
T ss_pred EeCHHHHHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEec
Confidence 885 79999999999999987655332 12466999999999999999986
No 29
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.78 E-value=7.7e-18 Score=117.61 Aligned_cols=114 Identities=23% Similarity=0.315 Sum_probs=82.8
Q ss_pred CcceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCC--cEEEEEecCCCCCCCCCCCCCCCCCCceEE
Q 029568 15 PLLSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYG--IGIHLIENPSIDDFDTVTEPRPINPKDNHI 92 (191)
Q Consensus 15 ~i~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~--~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi 92 (191)
+++++.|+.|.|+|++++.+||+++||+++....+ ...|+...+ ....+.... ....+..|+
T Consensus 1 ~~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~----~~~~~~~~~~~~~~~~~~~~------------~~~~~~~hi 64 (121)
T cd07266 1 NILRLGHVELRVTDLEKSREFYVDVLGLVETEEDD----DRIYLRGLEEFIHHSLVLTK------------APVAGLGHI 64 (121)
T ss_pred CcceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC----CeEEEEecCCCceEEEEEee------------CCCCceeEE
Confidence 47899999999999999999999999999876543 344443221 122222111 113468899
Q ss_pred EEEe---CCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeec
Q 029568 93 SFQC---TDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCE 144 (191)
Q Consensus 93 ~f~v---~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~ 144 (191)
+|.| +|+++++++++++|+++...+......+.+++|+.|||||+|||++..
T Consensus 65 ~~~v~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~~ 119 (121)
T cd07266 65 AFRVRSEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAEM 119 (121)
T ss_pred EEECCCHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEecc
Confidence 9998 589999999999999986653322222347899999999999999653
No 30
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.78 E-value=7.3e-18 Score=117.93 Aligned_cols=112 Identities=21% Similarity=0.198 Sum_probs=81.6
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCceEEEEEe
Q 029568 17 LSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDNHISFQC 96 (191)
Q Consensus 17 ~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~v 96 (191)
.+++|++|.|+|+++|.+||+++|||++..+.. ....|+..++..+.+..... ...+..|++|.+
T Consensus 1 ~~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~---~~~~~~~~~~~~~~~~l~~~------------~~~~~~~~~f~v 65 (120)
T cd07252 1 KSLGYLGVESSDLDAWRRFATDVLGLQVGDRPE---DGALYLRMDDRAWRIAVHPG------------EADDLAYAGWEV 65 (120)
T ss_pred CcccEEEEEeCCHHHHHHHHHhccCceeccCCC---CCeEEEEccCCceEEEEEeC------------CCCceeEEEEEE
Confidence 368999999999999999999999999876532 13556655443333332221 124678999999
Q ss_pred C---CHHHHHHHHHhCCCeEEeeeeec--CCceeEEEEEECCCCCEEEEEee
Q 029568 97 T---DVALVKRRLEDMGMRYVTAVVED--DGTRVDQVFFHDPDGYMIELCNC 143 (191)
Q Consensus 97 ~---dvd~~~~~l~~~G~~~~~~~~~~--~g~g~~~~~~~DPdG~~iEl~~~ 143 (191)
+ |+++++++|+++|+++...+... ...+.+.+|++|||||.|||+..
T Consensus 66 ~~~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 117 (120)
T cd07252 66 ADEAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWG 117 (120)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEec
Confidence 5 59999999999999987644211 11234789999999999999964
No 31
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.78 E-value=8e-18 Score=122.97 Aligned_cols=117 Identities=22% Similarity=0.288 Sum_probs=83.1
Q ss_pred CcceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCC-----ccceeEEeeCCc--EEEEEecCCCCCCCCCCCCCCCCC
Q 029568 15 PLLSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSF-----NFNGAWLYNYGI--GIHLIENPSIDDFDTVTEPRPINP 87 (191)
Q Consensus 15 ~i~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~-----~~~~~~~~~~~~--~l~l~~~~~~~~~~~~~~~~~~~~ 87 (191)
..++++|++|.|+|++++.+||+++|||++....... .....|+..++. .+.+... ....
T Consensus 6 ~~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~-------------~~~~ 72 (154)
T cd07237 6 GDQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAEG-------------PGPK 72 (154)
T ss_pred CCCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEcC-------------CCCc
Confidence 3568999999999999999999999999987642210 112334433221 1222111 1235
Q ss_pred CceEEEEEeCCH---HHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeec
Q 029568 88 KDNHISFQCTDV---ALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCE 144 (191)
Q Consensus 88 g~~hi~f~v~dv---d~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~ 144 (191)
+++||+|.|+|+ ++++++|+++|+++...+......+.+++|++||+|+.|||.+..
T Consensus 73 g~~Hiaf~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~~ 132 (154)
T cd07237 73 RIHHLMLEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWGG 132 (154)
T ss_pred eeEEEEEEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccCc
Confidence 789999999765 568999999999987665443333568899999999999998753
No 32
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.78 E-value=1.9e-17 Score=116.71 Aligned_cols=118 Identities=28% Similarity=0.403 Sum_probs=88.3
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhc---CCEEeeecCCCccceeEEee-CCcEEEEEecCCCCCCCCCCCCCCCCCCceEEE
Q 029568 18 SLNHVSLLCRSVWDSVRFYEDVL---GFVLIKRPSSFNFNGAWLYN-YGIGIHLIENPSIDDFDTVTEPRPINPKDNHIS 93 (191)
Q Consensus 18 ~l~hv~i~v~Dl~~a~~FY~~~L---G~~~~~~~~~~~~~~~~~~~-~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~ 93 (191)
+++|++|.|.|++++.+||+++| ||++....+. ...|... ++..+.+........ ........+..|++
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~~---~~~~~~~~~~~~i~l~~~~~~~~----~~~~~~~~g~~hia 73 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWED---GRSWRAGDGGTYLVLQQADGESA----GRHDRRNPGLHHLA 73 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeecc---CceEEecCCceEEEEEecccCCC----cccccCCcCeeEEE
Confidence 57999999999999999999999 9999876431 2345543 556677766554321 11122345678999
Q ss_pred EEeC---CHHHHHHHHHhCCCeEEeeeeec--CCceeEEEEEECCCCCEEEEEe
Q 029568 94 FQCT---DVALVKRRLEDMGMRYVTAVVED--DGTRVDQVFFHDPDGYMIELCN 142 (191)
Q Consensus 94 f~v~---dvd~~~~~l~~~G~~~~~~~~~~--~g~g~~~~~~~DPdG~~iEl~~ 142 (191)
|.|. |+++++++++++|+++...+... ...+.+++|++|||||+|||+.
T Consensus 74 ~~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~ 127 (128)
T cd07242 74 FRAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVA 127 (128)
T ss_pred EEcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEe
Confidence 9995 58999999999999988766432 2235689999999999999985
No 33
>PRK06724 hypothetical protein; Provisional
Probab=99.78 E-value=1.3e-17 Score=118.28 Aligned_cols=112 Identities=19% Similarity=0.270 Sum_probs=80.3
Q ss_pred CcceeeEEEEEeCCHHHHHHHHHHhc---CCEEeeecCCCccceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCceE
Q 029568 15 PLLSLNHVSLLCRSVWDSVRFYEDVL---GFVLIKRPSSFNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDNH 91 (191)
Q Consensus 15 ~i~~l~hv~i~v~Dl~~a~~FY~~~L---G~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~h 91 (191)
++.+++||.|.|+|+++|++||+++| |++..... . +..+...+.+...... .....+..|
T Consensus 4 ~~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~-------~-~~~g~~~l~l~~~~~~---------~~~~~g~~h 66 (128)
T PRK06724 4 LRAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEV-------A-YSTGESEIYFKEVDEE---------IVRTLGPRH 66 (128)
T ss_pred cCcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeE-------e-eeCCCeeEEEecCCcc---------ccCCCCcee
Confidence 46689999999999999999999966 56553210 1 1122223333221110 012346789
Q ss_pred EEEEe---CCHHHHHHHHHhCCCeEEeeeeecC--CceeEEEEEECCCCCEEEEEee
Q 029568 92 ISFQC---TDVALVKRRLEDMGMRYVTAVVEDD--GTRVDQVFFHDPDGYMIELCNC 143 (191)
Q Consensus 92 i~f~v---~dvd~~~~~l~~~G~~~~~~~~~~~--g~g~~~~~~~DPdG~~iEl~~~ 143 (191)
+||.| +++|+++++++++|+++...|.... ++|.+++||+|||||.|||...
T Consensus 67 ~af~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 123 (128)
T PRK06724 67 ICYQAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYT 123 (128)
T ss_pred EEEecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeC
Confidence 99998 8899999999999999877665432 3577899999999999999865
No 34
>PLN02300 lactoylglutathione lyase
Probab=99.77 E-value=2e-17 Score=132.34 Aligned_cols=128 Identities=21% Similarity=0.282 Sum_probs=92.2
Q ss_pred CcCcceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecC--CCccceeEEeeCC--c--EEEEEecCCCCCCCCCCCCCCCC
Q 029568 13 ALPLLSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPS--SFNFNGAWLYNYG--I--GIHLIENPSIDDFDTVTEPRPIN 86 (191)
Q Consensus 13 ~~~i~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~--~~~~~~~~~~~~~--~--~l~l~~~~~~~~~~~~~~~~~~~ 86 (191)
.+.|.+++|++|.|+|++++++||+++|||+...+.. ...+...|+..+. . .+++...... ......
T Consensus 19 ~~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~-------~~~~~~ 91 (286)
T PLN02300 19 KKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNYGV-------DKYDIG 91 (286)
T ss_pred ccccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccCCC-------CccccC
Confidence 4779999999999999999999999999999876532 1222344553321 1 3344322211 111234
Q ss_pred CCceEEEEEeCCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeecCCC
Q 029568 87 PKDNHISFQCTDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCENIP 147 (191)
Q Consensus 87 ~g~~hi~f~v~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~~~~ 147 (191)
.+..|++|.|+|+++++++++++|+++...+....+.+.+.+|++|||||+|||+++...+
T Consensus 92 ~g~~hia~~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~~~~~ 152 (286)
T PLN02300 92 TGFGHFGIAVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQRGPTP 152 (286)
T ss_pred CCccEEEEEeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeCCCCC
Confidence 5788999999999999999999999987766444333456789999999999999975433
No 35
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.77 E-value=3.1e-17 Score=113.32 Aligned_cols=113 Identities=19% Similarity=0.163 Sum_probs=83.2
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCC-cEEEEEecCCCCCCCCCCCCCCCCCCceEEEEEeC
Q 029568 19 LNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYG-IGIHLIENPSIDDFDTVTEPRPINPKDNHISFQCT 97 (191)
Q Consensus 19 l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~-~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~v~ 97 (191)
+.|++|.|+|++++++||+++||+++..... ......++..++ ..+.++..... ....+...|++|.|+
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~f~v~ 70 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGGDYAVFSTGGGAVGGLMKAPEP---------AAGSPPGWLVYFAVD 70 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCCceEEEEeCCccEEEEecCCCC---------CCCCCCeEEEEEEeC
Confidence 4799999999999999999999999976542 111223333433 33444443321 123446779999999
Q ss_pred CHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEe
Q 029568 98 DVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCN 142 (191)
Q Consensus 98 dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~ 142 (191)
|+++++++|+++|+++..++...+ ++.+.++++|||||.|+|.+
T Consensus 71 di~~~~~~l~~~g~~~~~~~~~~~-~~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 71 DVDAAAARVEAAGGKVLVPPTDIP-GVGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred CHHHHHHHHHHCCCEEEeCCcccC-CcEEEEEEECCCCCEEEeEC
Confidence 999999999999999887765444 34589999999999999974
No 36
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.77 E-value=1.7e-17 Score=114.85 Aligned_cols=110 Identities=22% Similarity=0.316 Sum_probs=84.4
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeC-CcEEEEEecCCCCCCCCCCCCCCCCCCceEEEEE
Q 029568 17 LSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNY-GIGIHLIENPSIDDFDTVTEPRPINPKDNHISFQ 95 (191)
Q Consensus 17 ~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~-~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~ 95 (191)
++++|+.|.|.|++++.+||+++||+++....+ ...|+..+ +....+..... ...+..|++|.
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~----~~~~~~~~~~~~~~~~~~~~------------~~~~~~h~~~~ 64 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA----GSVYLRCSEDDHHSLVLTEG------------DEPGVDALGFE 64 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC----CeEEEecCCCCcEEEEEEeC------------CCCCceeEEEE
Confidence 478999999999999999999999999987754 35666554 33333322221 12467899999
Q ss_pred eC---CHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEee
Q 029568 96 CT---DVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNC 143 (191)
Q Consensus 96 v~---dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~ 143 (191)
|. ++++++++++++|+++...+.... ++.+.+|+.||+||++|+...
T Consensus 65 v~~~~~v~~~~~~l~~~g~~~~~~~~~~~-~~~~~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 65 VASEEDLEALAAHLEAAGVAPEEASDPEP-GVGRGLRFQDPDGHLLELFVE 114 (117)
T ss_pred cCCHHHHHHHHHHHHHcCCceEEcCccCC-CCceEEEEECCCCCEEEEEEc
Confidence 96 789999999999999877654333 355889999999999999964
No 37
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.77 E-value=1.8e-17 Score=116.08 Aligned_cols=119 Identities=17% Similarity=0.238 Sum_probs=77.6
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCceEEEE--EeCC
Q 029568 21 HVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDNHISF--QCTD 98 (191)
Q Consensus 21 hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f--~v~d 98 (191)
|++|.|+|+++|++||+++||+++..... ....+...+..+.+....................+..|++| .++|
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~d 77 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE----TWVDFDFFGHQLVAHLSPNFNADASDNAVDGHPVPVPHFGLILSEEE 77 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC----CcccccccCcEEEEEeccCCCcccccCCCCCCccCCceEEEEEeHHH
Confidence 89999999999999999999999865432 11122223334433322211000000111112234567765 4589
Q ss_pred HHHHHHHHHhCCCeEEeeeeec---CCceeEEEEEECCCCCEEEEEee
Q 029568 99 VALVKRRLEDMGMRYVTAVVED---DGTRVDQVFFHDPDGYMIELCNC 143 (191)
Q Consensus 99 vd~~~~~l~~~G~~~~~~~~~~---~g~g~~~~~~~DPdG~~iEl~~~ 143 (191)
+++++++|+++|+++...+... ..++.+.+|++|||||+|||+.+
T Consensus 78 v~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 125 (125)
T cd08357 78 FDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKAF 125 (125)
T ss_pred HHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEeeC
Confidence 9999999999999988665432 11346889999999999999863
No 38
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.77 E-value=1.7e-17 Score=115.60 Aligned_cols=113 Identities=21% Similarity=0.294 Sum_probs=83.7
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCceEEEEE
Q 029568 16 LLSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDNHISFQ 95 (191)
Q Consensus 16 i~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~ 95 (191)
+.+++|+.|.|+|++++.+||+++|||+.....+ ...|+...+...+++.... ...++..|++|.
T Consensus 1 ~~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~----~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 65 (120)
T cd08362 1 VTALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD----GIVYLRATGSEHHILRLRR-----------SDRNRLDVVSFS 65 (120)
T ss_pred CceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC----CEEEEECCCCccEEEEecc-----------CCCCCCceEEEE
Confidence 4689999999999999999999999999876543 3455544433222332211 112356899999
Q ss_pred e---CCHHHHHHHHHhCCCeEEeeeeec-CCceeEEEEEECCCCCEEEEEee
Q 029568 96 C---TDVALVKRRLEDMGMRYVTAVVED-DGTRVDQVFFHDPDGYMIELCNC 143 (191)
Q Consensus 96 v---~dvd~~~~~l~~~G~~~~~~~~~~-~g~g~~~~~~~DPdG~~iEl~~~ 143 (191)
| +++++++++++++|+++...+... .+++.+.+++.||+||.|||++.
T Consensus 66 v~~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~ 117 (120)
T cd08362 66 VASRADVDALARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSAD 117 (120)
T ss_pred eCCHHHHHHHHHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEec
Confidence 9 579999999999999987654322 23456789999999999999865
No 39
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.77 E-value=1.1e-17 Score=117.08 Aligned_cols=107 Identities=30% Similarity=0.448 Sum_probs=80.9
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCceEEEEEe-
Q 029568 18 SLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDNHISFQC- 96 (191)
Q Consensus 18 ~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~v- 96 (191)
+++|+.|.|+|++++.+||+++||+++....+ ...++..++..+.+..... . ....+..|++|.+
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~----~~~~~~~~~~~~~l~~~~~-------~---~~~~~~~hi~f~v~ 66 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD----KGAYLEAGDLWLCLSVDAN-------V---GPAKDYTHYAFSVS 66 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC----CceEEecCCEEEEEecCCC-------C---CCCCCeeeEEEEeC
Confidence 47899999999999999999999999877654 3455555554444432221 0 1245678999998
Q ss_pred -CCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEe
Q 029568 97 -TDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCN 142 (191)
Q Consensus 97 -~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~ 142 (191)
+|+++++++++++|+++...+. .. .+.+||.|||||+|||+.
T Consensus 67 ~~dl~~~~~~l~~~G~~~~~~~~-~~---~~~~~f~DPdG~~ie~~~ 109 (121)
T cd07244 67 EEDFASLKEKLRQAGVKEWKENT-SE---GDSFYFLDPDGHKLELHV 109 (121)
T ss_pred HHHHHHHHHHHHHcCCcccCCCC-CC---ccEEEEECCCCCEEEEEe
Confidence 6899999999999998765432 22 268999999999999994
No 40
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.77 E-value=3.9e-17 Score=114.44 Aligned_cols=121 Identities=21% Similarity=0.228 Sum_probs=81.5
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCCcEEEEEecCCCC---CCCCCCCCCCCCCCceEEEEE
Q 029568 19 LNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYGIGIHLIENPSID---DFDTVTEPRPINPKDNHISFQ 95 (191)
Q Consensus 19 l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~---~~~~~~~~~~~~~g~~hi~f~ 95 (191)
+.|+.|+|+|++++.+||+++|||+.....+.. .-..+..++..+.+....... .....+......++..|++|.
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHESG--DYGELETGETTLAFASHDLAESNLKGGFVKADPAQPPAGFEIAFV 78 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecCCC--cEEEecCCcEEEEEEcccccccccccCccCCccccCCCcEEEEEE
Confidence 469999999999999999999999987543311 111122233333333221110 000011111223345699999
Q ss_pred eCCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEe
Q 029568 96 CTDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCN 142 (191)
Q Consensus 96 v~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~ 142 (191)
|+|+++++++++++|+++..++... ++|.+.++++|||||.|||.+
T Consensus 79 v~di~~~~~~l~~~G~~~~~~~~~~-~~g~~~~~~~DPdG~~~~~~~ 124 (125)
T cd07264 79 TDDVAAAFARAVEAGAVLVSEPKEK-PWGQTVAYVRDINGFLIELCS 124 (125)
T ss_pred cCCHHHHHHHHHHcCCEeccCCccC-CCCcEEEEEECCCCCEEEEec
Confidence 9999999999999999987766443 367788999999999999985
No 41
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.76 E-value=8.5e-18 Score=117.55 Aligned_cols=118 Identities=27% Similarity=0.393 Sum_probs=85.2
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEeeecC----CCccceeEEeeCCcEEEEEecCCCCCCCCCCCCCCC---CCCce
Q 029568 18 SLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPS----SFNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPI---NPKDN 90 (191)
Q Consensus 18 ~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~----~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~---~~g~~ 90 (191)
+|+|++|.|.|++++.+||+++|||++..... .......++..+...+.+........ ..... ..+..
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~ 75 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEGHIELFLNPSPPP-----RASGHSFPEHGGH 75 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSSCEEEEEEESSSS-----SSEEEHHHSHTSE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccccceeeeeeccccc-----cccccccccccce
Confidence 68999999999999999999999999988644 11223344555666666666553321 10000 01456
Q ss_pred EEEEEe---CCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEE
Q 029568 91 HISFQC---TDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIEL 140 (191)
Q Consensus 91 hi~f~v---~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl 140 (191)
|+++.+ +|+++++++|+++|+++...+......+..++|++||+||.|||
T Consensus 76 ~i~~~~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 76 HIAFLAFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp EEEEEESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred eEEEEeccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 777776 67889999999999999988765554455666899999999997
No 42
>PRK10291 glyoxalase I; Provisional
Probab=99.76 E-value=3.6e-17 Score=115.79 Aligned_cols=115 Identities=23% Similarity=0.326 Sum_probs=79.2
Q ss_pred EEEeCCHHHHHHHHHHhcCCEEeeecCC--CccceeEEeeCC----cEEEEEecCCCCCCCCCCCCCCCCCCceEEEEEe
Q 029568 23 SLLCRSVWDSVRFYEDVLGFVLIKRPSS--FNFNGAWLYNYG----IGIHLIENPSIDDFDTVTEPRPINPKDNHISFQC 96 (191)
Q Consensus 23 ~i~v~Dl~~a~~FY~~~LG~~~~~~~~~--~~~~~~~~~~~~----~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~v 96 (191)
.|.|.|+++|++||+++|||++..+... ..+...++..++ ..+++..... .. ......+..|++|.|
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~-~~~~g~~~~hlaf~V 73 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWG------VD-KYELGTAYGHIALSV 73 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCC------CC-CCcCCCCeeEEEEEe
Confidence 3789999999999999999998775432 222334443322 2234432211 11 112234688999999
Q ss_pred CCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeec
Q 029568 97 TDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCE 144 (191)
Q Consensus 97 ~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~ 144 (191)
+|+++++++|+++|+++...+.+..+.+.+.+||.|||||+|||++..
T Consensus 74 ~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~ 121 (129)
T PRK10291 74 DNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEK 121 (129)
T ss_pred CCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEcc
Confidence 999999999999999987654333222346688999999999999875
No 43
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.76 E-value=4.4e-17 Score=117.82 Aligned_cols=111 Identities=27% Similarity=0.384 Sum_probs=81.1
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCCc--EEEEEecCCCCCCCCCCCCCCCCCCceEEEE
Q 029568 17 LSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYGI--GIHLIENPSIDDFDTVTEPRPINPKDNHISF 94 (191)
Q Consensus 17 ~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~--~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f 94 (191)
.+++|+.|.|+|++++.+||+++|||++...... ...|+..++. .+.+.. ...++..|++|
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~---~~~~l~~~~~~~~~~l~~--------------~~~~~~~hiaf 65 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLGD---QMAFLRCNSDHHSIAIAR--------------GPHPSLNHVAF 65 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeCC---eEEEEECCCCcceEEEcc--------------CCCCceEEEEE
Confidence 4799999999999999999999999998754321 2345544432 233211 11346889999
Q ss_pred EeCCHHHHH---HHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeec
Q 029568 95 QCTDVALVK---RRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCE 144 (191)
Q Consensus 95 ~v~dvd~~~---~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~ 144 (191)
.|+|++++. ++|+++|+++...+......+.+++||+||+||.|||++..
T Consensus 66 ~v~d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~ 118 (144)
T cd07239 66 EMPSIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSEL 118 (144)
T ss_pred ECCCHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCc
Confidence 998877775 89999999987655333222346789999999999999864
No 44
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.76 E-value=2.1e-17 Score=113.87 Aligned_cols=108 Identities=29% Similarity=0.471 Sum_probs=80.5
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCceEEEEEe--CC
Q 029568 21 HVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDNHISFQC--TD 98 (191)
Q Consensus 21 hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~v--~d 98 (191)
|+.|.|+|++++.+||+++||++...+.+ ...++..++..+.+..... . .....+..|++|.| +|
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~----~~~~~~~~~~~l~~~~~~~------~---~~~~~~~~hiaf~v~~~d 67 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS----KEAYFELAGLWICLMEEDS------L---QGPERTYTHIAFQIQSEE 67 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC----ceeEEEecCeEEEeccCCC------c---CCCCCCccEEEEEcCHHH
Confidence 89999999999999999999999977654 3455555555554433221 0 11234678999999 58
Q ss_pred HHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEe
Q 029568 99 VALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCN 142 (191)
Q Consensus 99 vd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~ 142 (191)
+++++++++++|+++...... ..++.+.+|++|||||+|||+.
T Consensus 68 ~~~~~~~l~~~G~~~~~~~~~-~~~~~~~~~~~DPdG~~iEi~~ 110 (113)
T cd08345 68 FDEYTERLKALGVEMKPERPR-VQGEGRSIYFYDPDGHLLELHA 110 (113)
T ss_pred HHHHHHHHHHcCCccCCCccc-cCCCceEEEEECCCCCEEEEEe
Confidence 999999999999997654322 2234588999999999999985
No 45
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.76 E-value=6.4e-17 Score=112.55 Aligned_cols=113 Identities=15% Similarity=0.250 Sum_probs=80.5
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCC--cEEEEEecCCCCCCCCCC-CCCCCCCCceEEEEEeC
Q 029568 21 HVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYG--IGIHLIENPSIDDFDTVT-EPRPINPKDNHISFQCT 97 (191)
Q Consensus 21 hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~--~~l~l~~~~~~~~~~~~~-~~~~~~~g~~hi~f~v~ 97 (191)
++.|.|.|++++.+||+++|||+.....+ ....+..++ ..+.+....... .+ ......+...|++|.|+
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~~----~~~~~~~~~~~~~l~l~~~~~~~----~~~~~~~~~~~~~~~~~~v~ 75 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDSD----WYVSLRSPDGGVELAFMLPGHET----VPAAQYQFQGQGLILNFEVD 75 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEeccC----cEEEEecCCCceEEEEccCCCCC----CcchhcccCCceEEEEEEEC
Confidence 68899999999999999999999987533 223333333 234443322110 11 11122333459999999
Q ss_pred CHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEe
Q 029568 98 DVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCN 142 (191)
Q Consensus 98 dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~ 142 (191)
|+++++++++++|+++...+... ++|.+.++++||+||+|||++
T Consensus 76 did~~~~~l~~~G~~~~~~~~~~-~~g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 76 DVDAEYERLKAEGLPIVLPLRDE-PWGQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred CHHHHHHHHHhcCCCeeeccccC-CCcceEEEEECCCCCEEEEEC
Confidence 99999999999999987766443 467799999999999999985
No 46
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.76 E-value=4e-17 Score=114.13 Aligned_cols=116 Identities=28% Similarity=0.456 Sum_probs=83.3
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCc---cceeEEee----CCcEEEEEecCCCCCCCCCCCCCCCCCCce
Q 029568 18 SLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFN---FNGAWLYN----YGIGIHLIENPSIDDFDTVTEPRPINPKDN 90 (191)
Q Consensus 18 ~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~---~~~~~~~~----~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~ 90 (191)
+++|++|.|.|++++++||+++|||+......... ....++.. ++..++++...... ........+..
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~-----~~~~~~~~~~~ 75 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAG-----PKGRRGPGQIH 75 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCC-----CCCCCCCCcEE
Confidence 47899999999999999999999999887643211 11222322 34567776654321 11122345678
Q ss_pred EEEEEeC---CHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEE
Q 029568 91 HISFQCT---DVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELC 141 (191)
Q Consensus 91 hi~f~v~---dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~ 141 (191)
|++|.|+ ++++++++++++|+++...+. . .+.+++|++||+||+|||+
T Consensus 76 hi~f~v~~~~~~~~~~~~~~~~g~~~~~~~~-~--~~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 76 HIAFSVPSEASLDAWRERLRAAGVPVSGVVD-H--FGERSIYFEDPDGLRLELT 126 (126)
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCCcccceEe-e--cceEEEEEECCCCCEEEeC
Confidence 9999996 679999999999999765432 2 3458899999999999984
No 47
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.76 E-value=5.9e-17 Score=111.97 Aligned_cols=114 Identities=18% Similarity=0.211 Sum_probs=81.3
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEe--eC---CcEEEEEecCCCCCCCCCCCCCCCCCCceEEEEE
Q 029568 21 HVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLY--NY---GIGIHLIENPSIDDFDTVTEPRPINPKDNHISFQ 95 (191)
Q Consensus 21 hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~--~~---~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~ 95 (191)
|++|.|.|++++.+||+++|||++..+..... ...++. .. +..+++....... ........+..|++|.
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~ 74 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPGSPETSLVLAPPANPA-----AMSGLQPGGTPGLVLA 74 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCCCCeeEEEEeCCCCcc-----ccccccCCCceEEEEE
Confidence 89999999999999999999999987643111 223332 22 2344444333211 1111234567899999
Q ss_pred eCCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEe
Q 029568 96 CTDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCN 142 (191)
Q Consensus 96 v~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~ 142 (191)
|+|+++++++++++|+++...+.. . .+.+.++++||+||+|||.+
T Consensus 75 v~di~~~~~~l~~~g~~~~~~~~~-~-~~~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 75 TDDIDATYEELKARGVEFSEEPRE-M-PYGTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred ehHHHHHHHHHHhCCCEEeecccc-C-CCceEEEEECCCCCEEEEeC
Confidence 999999999999999998876632 2 23489999999999999974
No 48
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.75 E-value=4.6e-17 Score=119.82 Aligned_cols=116 Identities=21% Similarity=0.256 Sum_probs=77.8
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCC--CccceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCceEEEE
Q 029568 17 LSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSS--FNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDNHISF 94 (191)
Q Consensus 17 ~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~--~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f 94 (191)
++++|++|.|+|++++.+||+++|||++...... ......|+...+....+.... ...++..|++|
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~~~~i~l~~------------~~~~~~~Hiaf 69 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGGVHDTALTG------------GNGPRLHHVAF 69 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCCcceEEEec------------CCCCceeEEEE
Confidence 5899999999999999999999999998754221 111123333222111111111 12346889999
Q ss_pred EeCC---HHHHHHHHHhCCCeE--EeeeeecCCceeEEEEEECCCCCEEEEEeec
Q 029568 95 QCTD---VALVKRRLEDMGMRY--VTAVVEDDGTRVDQVFFHDPDGYMIELCNCE 144 (191)
Q Consensus 95 ~v~d---vd~~~~~l~~~G~~~--~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~ 144 (191)
.|+| +++++++|+++|+.. ...+......+.+++|++|||||.|||++..
T Consensus 70 ~v~~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~ 124 (161)
T cd07256 70 WVPEPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGD 124 (161)
T ss_pred EcCCHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecC
Confidence 9965 888889999999863 2223222223457899999999999999754
No 49
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.75 E-value=2.9e-17 Score=118.37 Aligned_cols=112 Identities=16% Similarity=0.137 Sum_probs=82.5
Q ss_pred eEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCCc-EEEEEecCCCCCCCCCCCCCCCCCCceEEEEEeCC
Q 029568 20 NHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYGI-GIHLIENPSIDDFDTVTEPRPINPKDNHISFQCTD 98 (191)
Q Consensus 20 ~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~-~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~v~d 98 (191)
+||.|.|+|++++.+||+++|||++..+... ...|+...+. ..+.+.. ......+++||+|.|+|
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~~---~~~~l~~~~~~~~h~~~~-----------~~~~~~gl~Hiaf~v~~ 66 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIED---RIVFMRCHPNPFHHTFAV-----------GPASSSHFHHVNFMVTD 66 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeCC---EEEEEEcCCCCCcceeee-----------ccCCCCceEEEEEECCC
Confidence 5999999999999999999999998776431 3455543321 1222211 11235689999999965
Q ss_pred ---HHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeecC
Q 029568 99 ---VALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCEN 145 (191)
Q Consensus 99 ---vd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~~ 145 (191)
+++++++|+++|+++...|......+.+.+|++||+|+.|||.....
T Consensus 67 ~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~~ 116 (141)
T cd07258 67 IDDIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGME 116 (141)
T ss_pred HHHHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCcc
Confidence 56789999999999877765544345688999999999999998653
No 50
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.74 E-value=2.4e-16 Score=110.26 Aligned_cols=118 Identities=14% Similarity=0.076 Sum_probs=83.7
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEeeecCC--CccceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCceEEEEEeCCH
Q 029568 22 VSLLCRSVWDSVRFYEDVLGFVLIKRPSS--FNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDNHISFQCTDV 99 (191)
Q Consensus 22 v~i~v~Dl~~a~~FY~~~LG~~~~~~~~~--~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~v~dv 99 (191)
..|.|.|++++++||+++||++....... .......+..++..+.+........ .........+..|++|.|+|+
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~v~d~ 79 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGDGGVMVGSVRDDYR---ASSARAGGAGTQGVYVVVDDV 79 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECCEEEEEecCCCccc---ccccccCCCceEEEEEEECCH
Confidence 56889999999999999999999876421 1111223444555555544332211 000112335667999999999
Q ss_pred HHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEee
Q 029568 100 ALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNC 143 (191)
Q Consensus 100 d~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~ 143 (191)
++++++++++|+++..++.... +|.+.++++|||||+|+|.+|
T Consensus 80 d~~~~~l~~~G~~v~~~~~~~~-~g~~~~~~~DPdG~~~~l~~~ 122 (122)
T cd08355 80 DAHYERARAAGAEILREPTDTP-YGSREFTARDPEGNLWTFGTY 122 (122)
T ss_pred HHHHHHHHHCCCEEeeCccccC-CCcEEEEEECCCCCEEEEecC
Confidence 9999999999999887765443 677889999999999999754
No 51
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.74 E-value=3.9e-17 Score=114.59 Aligned_cols=123 Identities=24% Similarity=0.300 Sum_probs=87.2
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEeeecCC---CccceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCceEEEEE
Q 029568 19 LNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSS---FNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDNHISFQ 95 (191)
Q Consensus 19 l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~---~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~ 95 (191)
++|+.|.|+|++++.+||+++||++....... ......++..++..+++++........ .........+..|++|.
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~-~~~~~~~~~g~~h~~f~ 79 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLGNVQIELIEPLDDDSPI-AKFLEKRGEGLHHIAFE 79 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcCCEEEEEEEECCCCCcH-HHHHhcCCCceEEEEEE
Confidence 57999999999999999999999999876442 122345666677788887654321100 00011345678999999
Q ss_pred eCCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCC--CCEEEEEe
Q 029568 96 CTDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPD--GYMIELCN 142 (191)
Q Consensus 96 v~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPd--G~~iEl~~ 142 (191)
|+|+++++++++++|+++...+.....+|...+++.+|+ |+.|||++
T Consensus 80 v~d~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 80 VDDIDAALARLKAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred eCCHHHHHHHHHHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 999999999999999998877643333344444444445 99999974
No 52
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.73 E-value=1.1e-16 Score=112.49 Aligned_cols=118 Identities=18% Similarity=0.169 Sum_probs=79.1
Q ss_pred eEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEee-CCcEEEEEecCCCCCCCCCCCCCCCCCCceEEEEEeC-
Q 029568 20 NHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYN-YGIGIHLIENPSIDDFDTVTEPRPINPKDNHISFQCT- 97 (191)
Q Consensus 20 ~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~-~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~v~- 97 (191)
.++.|.|.|+++|++||++ |||+........ ...++.. ++..+.+........+...+.......+..|++|.|+
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~--~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~f~v~~ 78 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTA-LGFEFNPQFSDE--KAACMVISDNIFVMLLTEDFFQTFTPKPIADTKKSTEVLISLSADS 78 (124)
T ss_pred EEEEeecCCHHHHHHHHHH-CCCEEccccCCC--CeEEEEECCceEEEEEcHHHHhhccCCCcccCCCCCeEEEEEeCCC
Confidence 5799999999999999977 999987543211 2233333 3455656543221111000100112344569999996
Q ss_pred --CHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEe
Q 029568 98 --DVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCN 142 (191)
Q Consensus 98 --dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~ 142 (191)
++++++++++++|+++..++.... +.+.+||+|||||+|||++
T Consensus 79 ~~~vd~~~~~l~~~G~~i~~~p~~~~--~~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 79 REEVDELVEKALAAGGKEFREPQDHG--FMYGRSFADLDGHLWEVLW 123 (124)
T ss_pred HHHHHHHHHHHHHCCCcccCCcccCC--ceEEEEEECCCCCEEEEEE
Confidence 688999999999999887664433 3467899999999999984
No 53
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.73 E-value=4.2e-16 Score=110.77 Aligned_cols=115 Identities=32% Similarity=0.439 Sum_probs=82.7
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeC---CcEEEEEecCCCCCCCCCCCCCCCCCCceEEEE
Q 029568 18 SLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNY---GIGIHLIENPSIDDFDTVTEPRPINPKDNHISF 94 (191)
Q Consensus 18 ~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f 94 (191)
+++|+.|.|+|++++++||+++||+++....+. ....|+..+ +..+.+...... .. .....+..|++|
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~--~~~~~~~~~~~~~~~l~l~~~~~~------~~-~~~~~~~~h~~f 71 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL--GGLVFLSRDPDEHHQIALITGRPA------AP-PPGPAGLNHIAF 71 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC--CcEEEEEecCCCceEEEEEecCCC------CC-CCCCCCceEEEE
Confidence 589999999999999999999999998766431 133454433 234555543321 00 123457889999
Q ss_pred EeCCHH---HHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeec
Q 029568 95 QCTDVA---LVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCE 144 (191)
Q Consensus 95 ~v~dvd---~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~ 144 (191)
.|+|++ ++++++.++|+++.... . .+ +.+.+|++||+||+|||.+..
T Consensus 72 ~v~~~~~v~~~~~~l~~~G~~~~~~~-~-~~-~~~~~~~~DP~G~~ie~~~~~ 121 (134)
T cd08348 72 EVDSLDDLRDLYERLRAAGITPVWPV-D-HG-NAWSIYFRDPDGNRLELFVDT 121 (134)
T ss_pred EeCCHHHHHHHHHHHHHCCCCccccC-C-CC-ceeEEEEECCCCCEEEEEEcC
Confidence 997654 68899999999877643 2 22 347899999999999999753
No 54
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.73 E-value=1.3e-16 Score=109.04 Aligned_cols=104 Identities=29% Similarity=0.410 Sum_probs=76.5
Q ss_pred EEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCC----cEEEEEecCCCCCCCCCCCCCCCCCCceEEEEEeCCH
Q 029568 24 LLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYG----IGIHLIENPSIDDFDTVTEPRPINPKDNHISFQCTDV 99 (191)
Q Consensus 24 i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~----~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~v~dv 99 (191)
|.|+|++++++||+++|||++....+ ....+..+. ....+..... ......+..|++|.|+|+
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~v~dv 67 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP----DYVDFSLGFRFHDGVIEFLQFPD---------PPGPPGGGFHLCFEVEDV 67 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET----SEEEEEETEEEEEEEEEEEEEES---------SSSSSSSEEEEEEEESHH
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC----CeEEEEeccchhhhhHHHccCCc---------cccCCCceeEEEEEEcCH
Confidence 68999999999999999999998544 233332211 1223333221 113355788999999999
Q ss_pred HHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEE
Q 029568 100 ALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELC 141 (191)
Q Consensus 100 d~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~ 141 (191)
++++++++++|+++...+.... +|.+.+++.|||||+|||+
T Consensus 68 ~~~~~~l~~~G~~~~~~~~~~~-~g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 68 DALYERLKELGAEIVTEPRDDP-WGQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp HHHHHHHHHTTSEEEEEEEEET-TSEEEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHHCCCeEeeCCEEcC-CCeEEEEEECCCCCEEEeC
Confidence 9999999999999888776643 5779999999999999985
No 55
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.73 E-value=2.9e-16 Score=108.20 Aligned_cols=106 Identities=19% Similarity=0.215 Sum_probs=77.9
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeC---CcEEEEEecCCCCCCCCCCCCCCCCCCceEEEEEeC
Q 029568 21 HVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNY---GIGIHLIENPSIDDFDTVTEPRPINPKDNHISFQCT 97 (191)
Q Consensus 21 hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~---~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~v~ 97 (191)
+..|.|+|++++.+||+++|||+.....+ ...++... +..+.+..... ......|++|.|+
T Consensus 3 ~~~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~i~~~v~ 66 (112)
T cd07238 3 VPNLPVADPEAAAAFYADVLGLDVVMDHG----WIATFASPQNMTVQVSLATEGG------------TATVVPDLSIEVD 66 (112)
T ss_pred cceEecCCHHHHHHHHHHhcCceEEEcCC----ceEEEeecCCCCcEEEEecCCC------------CCCCCCEEEEEeC
Confidence 46789999999999999999999865422 22233222 23344432211 1234569999999
Q ss_pred CHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEee
Q 029568 98 DVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNC 143 (191)
Q Consensus 98 dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~ 143 (191)
|+++++++|+++|+++...+... .+|.+.+++.||+||+|||.+.
T Consensus 67 d~~~~~~~l~~~G~~~~~~~~~~-~~g~~~~~~~DP~Gn~i~~~~~ 111 (112)
T cd07238 67 DVDAALARAVAAGFAIVYGPTDE-PWGVRRFFVRDPFGKLVNILTH 111 (112)
T ss_pred CHHHHHHHHHhcCCeEecCCccC-CCceEEEEEECCCCCEEEEEEc
Confidence 99999999999999988766443 3677889999999999999964
No 56
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.72 E-value=2e-16 Score=110.60 Aligned_cols=117 Identities=20% Similarity=0.267 Sum_probs=78.9
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeC-CcEEEEEecCCCCCCCCCCCCCCCCCCceEEEEEe-
Q 029568 19 LNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNY-GIGIHLIENPSIDDFDTVTEPRPINPKDNHISFQC- 96 (191)
Q Consensus 19 l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~-~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~v- 96 (191)
++|++|.|.|+++|++||+. |||++...... .....+..+ +..+.+......... .+......++..|++|.+
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~--~~~~~~~~~~~~~l~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~~ 75 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADD--EPHVEAVLPGGVRLAWDTVESIRSF--TPGWTPTGGHRIALAFLCE 75 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCC--CCcEEEEeCCCEEEEEEcccceeee--cCCCCCCCCCcEEEEEEcC
Confidence 57999999999999999975 99998654321 112333333 444444332211100 011112234567888887
Q ss_pred --CCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEE
Q 029568 97 --TDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELC 141 (191)
Q Consensus 97 --~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~ 141 (191)
+|+++++++|+++|+++...+.. ..+|.+.++++|||||.|||+
T Consensus 76 ~~~dvd~~~~~l~~~G~~~~~~~~~-~~~g~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 76 TPAEVDALYAELVGAGYPGHKEPWD-APWGQRYAIVKDPDGNLVDLF 121 (122)
T ss_pred CHHHHHHHHHHHHHCCCCcCCCCcc-CCCCCEEEEEECCCCCEEEEe
Confidence 48999999999999988766643 346778899999999999997
No 57
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.72 E-value=4.1e-16 Score=108.76 Aligned_cols=112 Identities=23% Similarity=0.249 Sum_probs=78.9
Q ss_pred eEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCceEEEEEeCC-
Q 029568 20 NHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDNHISFQCTD- 98 (191)
Q Consensus 20 ~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~v~d- 98 (191)
.|+.|.|+|++++.+||+++||++.....+. ...|.. .+..+.+.....+. ...++..|++|.|++
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~---------~~~~~~~h~~f~v~~~ 69 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRDD---YAKFLL-EDPRLNFVLNERPG---------APGGGLNHLGVQVDSA 69 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccCC---eeEEEe-cCCceEEEEecCCC---------CCCCCeeEEEEEeCCH
Confidence 4999999999999999999999988765431 123332 22333333222110 111578899999976
Q ss_pred --HHHHHHHHHhCCCeEEeeeeecC-CceeEEEEEECCCCCEEEEEeec
Q 029568 99 --VALVKRRLEDMGMRYVTAVVEDD-GTRVDQVFFHDPDGYMIELCNCE 144 (191)
Q Consensus 99 --vd~~~~~l~~~G~~~~~~~~~~~-g~g~~~~~~~DPdG~~iEl~~~~ 144 (191)
++++++++.++|+++...+.... +.+.+++|++||+||+|||++..
T Consensus 70 ~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 70 EEVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred HHHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence 89999999999999876543221 11347899999999999999753
No 58
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.72 E-value=4.2e-16 Score=110.63 Aligned_cols=115 Identities=25% Similarity=0.304 Sum_probs=81.2
Q ss_pred eEEEEEeCCHHHHHHHHHHhcCCEEeeecCC-CccceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCceEEEEEeCC
Q 029568 20 NHVSLLCRSVWDSVRFYEDVLGFVLIKRPSS-FNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDNHISFQCTD 98 (191)
Q Consensus 20 ~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~-~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~v~d 98 (191)
+|++|.|+|++++.+||+++||+++...... ......|+..++....+..... ....+..|++|.|+|
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~hl~~~v~d 69 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDPGVDAAAFLRCDEDHHDLALFPG-----------PERPGLHHVAFEVES 69 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccCCceeEEEEEcCCCcceEEEEcC-----------CCCCCeeEEEEEcCC
Confidence 5999999999999999999999998765331 1113345444332222211111 114578999999987
Q ss_pred H---HHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeecC
Q 029568 99 V---ALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCEN 145 (191)
Q Consensus 99 v---d~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~~ 145 (191)
+ ++++++++++|+++...+......+.++++++||+||+|||.+...
T Consensus 70 ~~~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 119 (131)
T cd08343 70 LDDILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMY 119 (131)
T ss_pred HHHHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCc
Confidence 6 4788999999999887654433234578899999999999997653
No 59
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.72 E-value=2.8e-16 Score=109.95 Aligned_cols=112 Identities=20% Similarity=0.216 Sum_probs=79.6
Q ss_pred eeEEEEEeCCHHHHHHHHHHh---cCCEEeeecCCCccceeEEeeC--CcEEEEEecCCCCCCCCCCCCCCCCCCceEEE
Q 029568 19 LNHVSLLCRSVWDSVRFYEDV---LGFVLIKRPSSFNFNGAWLYNY--GIGIHLIENPSIDDFDTVTEPRPINPKDNHIS 93 (191)
Q Consensus 19 l~hv~i~v~Dl~~a~~FY~~~---LG~~~~~~~~~~~~~~~~~~~~--~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~ 93 (191)
++|+.|.|+|+++|++||+++ ||++...+... ...++... +..+.+...... . .....+..||+
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~-------~-~~~~~~~~hi~ 69 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMEDGP---GAVGYGKGGGGPDFWVTKPFDG-------E-PATAGNGTHVA 69 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeecCC---ceeEeccCCCCceEEEeccccC-------C-CCCCCCceEEE
Confidence 579999999999999999998 69998765411 22333333 345666543321 0 01223457999
Q ss_pred EEeCC---HHHHHHHHHhCCCeEEeeeeecC--CceeEEEEEECCCCCEEEEE
Q 029568 94 FQCTD---VALVKRRLEDMGMRYVTAVVEDD--GTRVDQVFFHDPDGYMIELC 141 (191)
Q Consensus 94 f~v~d---vd~~~~~l~~~G~~~~~~~~~~~--g~g~~~~~~~DPdG~~iEl~ 141 (191)
|.|++ ++++++++.++|+.+...+.... +.+.+++|++|||||.|||+
T Consensus 70 f~v~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 70 FAAPSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred EECCCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 99975 88899999999999876664432 23456899999999999997
No 60
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.72 E-value=3.5e-16 Score=109.27 Aligned_cols=108 Identities=20% Similarity=0.289 Sum_probs=79.2
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCceEEEEEeCCHH
Q 029568 21 HVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDNHISFQCTDVA 100 (191)
Q Consensus 21 hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~v~dvd 100 (191)
...|.|.|+++|++||++ |||+...+.+. .-.++..++..++|...... . ......|++|.|+|++
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~---~~~~~~~~~~~l~l~~~~~~------~----~~~~~~~~~~~v~dvd 70 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQAA---GYMILRRGDLELHFFAHPDL------D----PATSPFGCCLRLPDVA 70 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCCC---CEEEEEcCCEEEEEEecCcC------C----CCCCcceEEEEeCCHH
Confidence 467899999999999999 99999876542 22334455667777654321 1 1123458999999999
Q ss_pred HHHHHHHhCCCeEE-------eeeeecCCceeEEEEEECCCCCEEEEEee
Q 029568 101 LVKRRLEDMGMRYV-------TAVVEDDGTRVDQVFFHDPDGYMIELCNC 143 (191)
Q Consensus 101 ~~~~~l~~~G~~~~-------~~~~~~~g~g~~~~~~~DPdG~~iEl~~~ 143 (191)
+++++|+++|+++. ..+ ....+|.+.++++|||||+|||.+.
T Consensus 71 ~~~~~l~~~G~~~~~~~~~~~~~~-~~~~~g~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 71 ALHAEFRAAGLPETGSGIPRITPP-EDQPWGMREFALVDPDGNLLRFGQP 119 (120)
T ss_pred HHHHHHHHhCccccccCCCcccCC-cCCCCceeEEEEECCCCCEEEeecC
Confidence 99999999999743 122 1223677999999999999999863
No 61
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.71 E-value=5.5e-16 Score=108.02 Aligned_cols=118 Identities=23% Similarity=0.311 Sum_probs=82.6
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCC-cEEEEEecCCCCCCCCCCCCCCCCCCceEEEEEe-
Q 029568 19 LNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYG-IGIHLIENPSIDDFDTVTEPRPINPKDNHISFQC- 96 (191)
Q Consensus 19 l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~-~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~v- 96 (191)
+.|+.|.|+|++++.+||+++|||++..+.. . ...++..++ ..+.++........ ..........+..|++|.+
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~~-~--~~~~l~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~ 76 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLKED-R--RLAFFWVGGRGMLLLFDPGATSTP-GGEIPPHGGSGPGHFAFAIP 76 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeecCC-C--ceEEEEcCCCcEEEEEecCCcccc-cCCCCCCCCCCccEEEEEcC
Confidence 3689999999999999999999999987422 1 234444444 44555543321100 0001112245778999998
Q ss_pred -CCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEe
Q 029568 97 -TDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCN 142 (191)
Q Consensus 97 -~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~ 142 (191)
+|++++++++.++|+++...+. ..++.+.++++||+||+|||++
T Consensus 77 ~~dl~~~~~~l~~~g~~~~~~~~--~~~~~~~~~~~DP~G~~ie~~~ 121 (122)
T cd08354 77 AEELAEWEAHLEAKGVAIESEVQ--WPRGGRSLYFRDPDGNLLELAT 121 (122)
T ss_pred HHHHHHHHHHHHhcCCceecccc--CCCCeeEEEEECCCCCEEEEec
Confidence 6899999999999998766542 2345688999999999999985
No 62
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.71 E-value=8.9e-16 Score=106.85 Aligned_cols=115 Identities=16% Similarity=0.054 Sum_probs=82.9
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEeeecC--CCccceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCceEEEEEeCCH
Q 029568 22 VSLLCRSVWDSVRFYEDVLGFVLIKRPS--SFNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDNHISFQCTDV 99 (191)
Q Consensus 22 v~i~v~Dl~~a~~FY~~~LG~~~~~~~~--~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~v~dv 99 (191)
+.|.|.|++++.+||+++||++...... ........+..++..+.+....... ........+..|++|.|+|+
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~v~d~ 79 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGDSVLMLADEFPEH-----GSPASWGGTPVSLHLYVEDV 79 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECCEEEEEecCCccc-----CCCCCCCCceEEEEEEeCCH
Confidence 5688999999999999999999987643 1111223344455556555432111 01112344567999999999
Q ss_pred HHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEe
Q 029568 100 ALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCN 142 (191)
Q Consensus 100 d~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~ 142 (191)
+++++++.++|+++..++... .+|.+.++++||+||.|+|.+
T Consensus 80 ~~~~~~l~~~G~~~~~~~~~~-~~g~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 80 DATFARAVAAGATSVMPPADQ-FWGDRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred HHHHHHHHHCCCeEecCcccc-cccceEEEEECCCCCEEEEec
Confidence 999999999999988776433 467799999999999999985
No 63
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.71 E-value=5.5e-16 Score=107.08 Aligned_cols=108 Identities=18% Similarity=0.249 Sum_probs=80.0
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEe-eCCcEEEEEecCCCCCCCCCCCCCCCCCCceEEEEEeCC--
Q 029568 22 VSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLY-NYGIGIHLIENPSIDDFDTVTEPRPINPKDNHISFQCTD-- 98 (191)
Q Consensus 22 v~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~v~d-- 98 (191)
+.|.|.|+++|++||+++||++.....+ ....+. .++..+.++..... ........+..|++|.|.+
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~v~~~~ 71 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELSP----TFALFVLGSGVKLGLWSRHTV------EPASDATGGGSELAFMVDDGA 71 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCCC----ceEEEEeCCCcEEEEeecccc------CCCCCCCCCceEEEEEcCCHH
Confidence 6789999999999999999999876433 223333 34556667654432 1111234567899999964
Q ss_pred -HHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEE
Q 029568 99 -VALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELC 141 (191)
Q Consensus 99 -vd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~ 141 (191)
++++++++.++|+++...+... ++| +.++|+|||||+|||+
T Consensus 72 ~~~~~~~~~~~~g~~v~~~~~~~-~~g-~~~~~~DPdGn~ie~~ 113 (114)
T cd07261 72 AVDALYAEWQAKGVKIIQEPTEM-DFG-YTFVALDPDGHRLRVF 113 (114)
T ss_pred HHHHHHHHHHHCCCeEecCcccc-CCc-cEEEEECCCCCEEEee
Confidence 8999999999999988776543 455 5789999999999997
No 64
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.71 E-value=7.6e-16 Score=105.64 Aligned_cols=109 Identities=21% Similarity=0.255 Sum_probs=81.1
Q ss_pred EEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCceEEEEEeCCHHHH
Q 029568 23 SLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDNHISFQCTDVALV 102 (191)
Q Consensus 23 ~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~v~dvd~~ 102 (191)
.|.|+|++++.+||+++||++........ ...++..++..+++....... .....+..|++|.++|++++
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 72 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHPEP--GYAFLSRGGAQLMLSEHDGDE--------PVPLGRGGSVYIEVEDVDAL 72 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcCCC--cEEEEEeCCEEEEEeccCCCC--------CCCCCCcEEEEEEeCCHHHH
Confidence 68999999999999999999998765311 234445566667765544211 01244567999999999999
Q ss_pred HHHHHhCCCe-EEeeeeecCCceeEEEEEECCCCCEEEEEe
Q 029568 103 KRRLEDMGMR-YVTAVVEDDGTRVDQVFFHDPDGYMIELCN 142 (191)
Q Consensus 103 ~~~l~~~G~~-~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~ 142 (191)
+++++++|++ +..++.. .+++.+.++++||+|+.|||+|
T Consensus 73 ~~~l~~~G~~~~~~~~~~-~~~g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 73 YAELKAKGADLIVYPPED-QPWGMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred HHHHHHcCCcceecCccC-CCcccEEEEEECCCCCEEEecC
Confidence 9999999998 4444433 3356689999999999999975
No 65
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.70 E-value=9.8e-16 Score=105.79 Aligned_cols=103 Identities=28% Similarity=0.399 Sum_probs=72.4
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCC-c--EEEEEecCCCCCCCCCCCCCCCCCCceEEEE
Q 029568 18 SLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYG-I--GIHLIENPSIDDFDTVTEPRPINPKDNHISF 94 (191)
Q Consensus 18 ~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~-~--~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f 94 (191)
+++|++|.|+|++++.+||+ .|||++..+.+ ..++...+ . .+.+.... ..+..|++|
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~ 61 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYE-AFGLDVREEGD-----GLELRTAGNDHRWARLLEGA--------------RKRLAYLSF 61 (112)
T ss_pred ceeEEEEecCCHHHHHHHHH-HhCCcEEeecC-----ceEEEecCCCceEEEeecCC--------------CCceeeEEE
Confidence 68999999999999999997 69999976532 23332222 2 22222111 223455544
Q ss_pred --EeCCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEee
Q 029568 95 --QCTDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNC 143 (191)
Q Consensus 95 --~v~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~ 143 (191)
.++|+++++++++++|+++...+ . . ++.+.+||.||+||+|||...
T Consensus 62 ~~~~~d~~~~~~~l~~~Gi~~~~~~-~-~-~~~~~~~~~DP~Gn~iel~~~ 109 (112)
T cd08344 62 GIFEDDFAAFARHLEAAGVALAAAP-P-G-ADPDGVWFRDPDGNLLQVKVA 109 (112)
T ss_pred EeEhhhHHHHHHHHHHcCCceecCC-C-c-CCCCEEEEECCCCCEEEEecC
Confidence 45899999999999999977654 1 1 234679999999999999953
No 66
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.69 E-value=7.5e-16 Score=124.13 Aligned_cols=120 Identities=23% Similarity=0.288 Sum_probs=81.3
Q ss_pred CCcCcceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecC--CCcc-ceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCC
Q 029568 12 EALPLLSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPS--SFNF-NGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPK 88 (191)
Q Consensus 12 ~~~~i~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~--~~~~-~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g 88 (191)
..+.+++++||+|.|+|++++.+||+++|||+...... .... ...|+..++....+.. . ..+..++
T Consensus 139 ~~~~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~--~~~~~g~ 207 (303)
T TIGR03211 139 RGVGARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSNKAHDIAF---------V--GDPEPGK 207 (303)
T ss_pred CCcCceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCCCCcccce---------e--cCCCCCc
Confidence 34568899999999999999999999999999865421 1110 1233322211100100 0 0111234
Q ss_pred ceEEEEEeCC---HHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEe
Q 029568 89 DNHISFQCTD---VALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCN 142 (191)
Q Consensus 89 ~~hi~f~v~d---vd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~ 142 (191)
.+||||.|+| +++++++|+++|+++...|...+..+.+++||+||+||+|||..
T Consensus 208 ~~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~~ 264 (303)
T TIGR03211 208 LHHVSFFLDSWEDVLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFG 264 (303)
T ss_pred eEEEEEEcCCHHHHHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEec
Confidence 8899999975 66688899999999877664333223478999999999999984
No 67
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.69 E-value=9.5e-16 Score=103.78 Aligned_cols=112 Identities=30% Similarity=0.410 Sum_probs=85.2
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCceEEEEEeCCHH
Q 029568 21 HVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDNHISFQCTDVA 100 (191)
Q Consensus 21 hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~v~dvd 100 (191)
|++|.|+|++++.+||+++||++.............++..++..+++....... . .....+..|++|.|+|++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~------~-~~~~~~~~~~~~~v~~~~ 73 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGNGGAEFAVLGLGGTRLELFEGDEPA------P-APSGGGGVHLAFEVDDVD 73 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeeccCCEEEEEEecCCceEEEecCCCCC------C-cccCCCeeEEEEECCCHH
Confidence 899999999999999999999998887542112344455556677777755321 0 023556889999999999
Q ss_pred HHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEE
Q 029568 101 LVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIEL 140 (191)
Q Consensus 101 ~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl 140 (191)
++++++.++|+.+...+.. ..++.+.+++.||+|+.|||
T Consensus 74 ~~~~~l~~~g~~~~~~~~~-~~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 74 AAYERLKAAGVEVLGEPRE-EPWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HHHHHHHHcCCcccCCCcC-CCCCcEEEEEECCCCcEEeC
Confidence 9999999999988776531 22456899999999999986
No 68
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.69 E-value=8.5e-16 Score=106.47 Aligned_cols=104 Identities=16% Similarity=0.226 Sum_probs=76.6
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCceEEEEEeCCHHH
Q 029568 22 VSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDNHISFQCTDVAL 101 (191)
Q Consensus 22 v~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~v~dvd~ 101 (191)
..|.|.|+++|.+||++ |||+.....+ ...++..++..+.+...... ...+..+++|.|+|+++
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~~----~~~~l~~~~~~l~l~~~~~~-----------~~~~~~~~~~~v~did~ 68 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEND----NLAYFRLGNCAFYLQDYYVK-----------DWAENSMLHLEVDDLEA 68 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecCC----CEEEEEcCCEEEEeecCCCc-----------ccccCCEEEEEECCHHH
Confidence 56789999999999988 9999987653 34566666666655332111 11234688999999999
Q ss_pred HHHHHHhCCCeEEe-----eeeecCCceeEEEEEECCCCCEEEEEe
Q 029568 102 VKRRLEDMGMRYVT-----AVVEDDGTRVDQVFFHDPDGYMIELCN 142 (191)
Q Consensus 102 ~~~~l~~~G~~~~~-----~~~~~~g~g~~~~~~~DPdG~~iEl~~ 142 (191)
++++|+++|+++.. .+.. ..+|.+.++++|||||+|+|.+
T Consensus 69 ~~~~l~~~G~~~~~~~~~~~~~~-~~~g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 69 YYEHIKALGLPKKFPGVKLPPIT-QPWWGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred HHHHHHHcCCcccccceecCccc-cCCCcEEEEEECCCccEEEeeC
Confidence 99999999987432 2222 2467799999999999999864
No 69
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.69 E-value=1e-15 Score=122.48 Aligned_cols=116 Identities=18% Similarity=0.241 Sum_probs=81.2
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCC--C---ccceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCce
Q 029568 16 LLSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSS--F---NFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDN 90 (191)
Q Consensus 16 i~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~--~---~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~ 90 (191)
+.+++||+|.|+|++++.+||+++|||++...... . .+...|+..++....+.... .+..++++
T Consensus 140 ~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~l~~-----------~~~~~~~~ 208 (286)
T TIGR03213 140 DQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNERHHSLAFAA-----------GPSEKRLN 208 (286)
T ss_pred CccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCCcceEEEec-----------CCCCCceE
Confidence 57899999999999999999999999998764210 0 11234554333221111111 12245789
Q ss_pred EEEEEeCCHHH---HHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEee
Q 029568 91 HISFQCTDVAL---VKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNC 143 (191)
Q Consensus 91 hi~f~v~dvd~---~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~ 143 (191)
||+|.|+|+++ ++++|+++|+ ....+......+.+++|++||+|++||+.+.
T Consensus 209 Hiaf~v~d~~~v~~~~~~l~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~~ 263 (286)
T TIGR03213 209 HLMLEVDTLDDVGLALDRVDADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGWG 263 (286)
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeecC
Confidence 99999987666 8999999999 4444433333456889999999999999874
No 70
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.69 E-value=1.2e-15 Score=107.57 Aligned_cols=108 Identities=13% Similarity=0.180 Sum_probs=73.9
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCc---------cce----eEEee----CCcEEEEEecCCCCCCCCCC
Q 029568 18 SLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFN---------FNG----AWLYN----YGIGIHLIENPSIDDFDTVT 80 (191)
Q Consensus 18 ~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~---------~~~----~~~~~----~~~~l~l~~~~~~~~~~~~~ 80 (191)
++.|++|.|.|+++|++||+++|||++..+..... +.+ .++.. .+..++|.......
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~------ 75 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIG------ 75 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCC------
Confidence 68899999999999999999999999876532111 111 22321 22356776644321
Q ss_pred CCCCCCCCceEEEEEeCCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEe
Q 029568 81 EPRPINPKDNHISFQCTDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCN 142 (191)
Q Consensus 81 ~~~~~~~g~~hi~f~v~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~ 142 (191)
....+..|++|.|++. ++.++|+++|+++...+. + .++++||||+.|||+.
T Consensus 76 ---~~~~g~~~~hlav~~~-d~~~~l~~~Gv~~~~~~~-----~--~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 76 ---DYELGNDFLGITIHSK-QAVSNAKKHNWPVTEVED-----G--VYEVKAPGGYKFYLID 126 (127)
T ss_pred ---CCCCCCCEEEEEEECH-HHHHHHHHCCCceecCCC-----C--EEEEECCCCCEEEEec
Confidence 1111223777777776 566999999998775431 2 6899999999999973
No 71
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.67 E-value=1.4e-15 Score=122.60 Aligned_cols=111 Identities=24% Similarity=0.339 Sum_probs=82.2
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCC----cEEEEEecCCCCCCCCCCCCCCCCCCceE
Q 029568 16 LLSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYG----IGIHLIENPSIDDFDTVTEPRPINPKDNH 91 (191)
Q Consensus 16 i~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~----~~l~l~~~~~~~~~~~~~~~~~~~~g~~h 91 (191)
+++++|+.|.|+|++++.+||+++|||++..+.+ ...++...+ ..+.+. . ....+..|
T Consensus 2 i~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~----~~~~~~~~~~~~~~~~~l~--~------------~~~~g~~h 63 (303)
T TIGR03211 2 VMRLGHVELRVLDLEESLKHYTDVLGLEETGRDG----QRVYLKAWDEWDHYSVILT--E------------ADTAGLDH 63 (303)
T ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecC----ceEEEEeccccccceEeec--c------------CCCCceeE
Confidence 6789999999999999999999999999987644 233333211 122221 1 11346899
Q ss_pred EEEEeC---CHHHHHHHHHhCCCeEEeeeee-cCCceeEEEEEECCCCCEEEEEeecC
Q 029568 92 ISFQCT---DVALVKRRLEDMGMRYVTAVVE-DDGTRVDQVFFHDPDGYMIELCNCEN 145 (191)
Q Consensus 92 i~f~v~---dvd~~~~~l~~~G~~~~~~~~~-~~g~g~~~~~~~DPdG~~iEl~~~~~ 145 (191)
++|.|+ |+++++++|++.|+++...+.. ..+ ..+.+|++|||||.|||.+...
T Consensus 64 iaf~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~-~g~~~~~~DPdG~~iEl~~~~~ 120 (303)
T TIGR03211 64 MAFKVESEADLERLVKRLEAYGVGTGWIPAGELPG-VGRRVRFTLPSGHTMELYAEKE 120 (303)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCeeeccCCCCCC-cceEEEEECCCCCEEEEEEccc
Confidence 999996 8999999999999998654431 122 2368999999999999998654
No 72
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.66 E-value=3.3e-15 Score=119.79 Aligned_cols=118 Identities=25% Similarity=0.405 Sum_probs=81.0
Q ss_pred CcCcceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCC--CccceeEEeeCCc--EEEEEecCCCCCCCCCCCCCCCCCC
Q 029568 13 ALPLLSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSS--FNFNGAWLYNYGI--GIHLIENPSIDDFDTVTEPRPINPK 88 (191)
Q Consensus 13 ~~~i~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~--~~~~~~~~~~~~~--~l~l~~~~~~~~~~~~~~~~~~~~g 88 (191)
.+.+++++|++|.|+|++++.+||+++||+++...... ......|+...+. .+.+. + ...++
T Consensus 131 ~~~~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~---~~~~~ 196 (294)
T TIGR02295 131 GVSPVRLDHFNVFVPDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKGGVHDIALT-----------N---GNGPR 196 (294)
T ss_pred CccceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCCCcCceEee-----------c---CCCCc
Confidence 45688999999999999999999999999998765321 1111233322111 11110 0 12357
Q ss_pred ceEEEEEeCC---HHHHHHHHHhCCCe--EEeeeeecCCceeEEEEEECCCCCEEEEEeec
Q 029568 89 DNHISFQCTD---VALVKRRLEDMGMR--YVTAVVEDDGTRVDQVFFHDPDGYMIELCNCE 144 (191)
Q Consensus 89 ~~hi~f~v~d---vd~~~~~l~~~G~~--~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~ 144 (191)
.+|+||.|+| +++++++|+++|++ +...|......+.+++|++||+||+|||++..
T Consensus 197 ~~Hiaf~v~d~~~v~~~~~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~~ 257 (294)
T TIGR02295 197 LHHIAYWVHDPLNIIKACDILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTGD 257 (294)
T ss_pred eeeEEEEcCCHHHHHHHHHHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEecc
Confidence 8999999987 55678999999987 54444332222346799999999999999754
No 73
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.66 E-value=3.7e-15 Score=103.55 Aligned_cols=116 Identities=19% Similarity=0.188 Sum_probs=80.2
Q ss_pred EEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCceEEEEEe---CC
Q 029568 22 VSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDNHISFQC---TD 98 (191)
Q Consensus 22 v~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~v---~d 98 (191)
|+|.|.|++++.+||+++||+++..+.. ....++..++..+.+...+...... .........+..|++|.+ +|
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d 77 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADSN---DGVAFFQLGGLVLALFPREELAKDA-GVPVPPPGFSGITLAHNVRSEEE 77 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccCC---CceEEEEcCCeEEEEecchhhhhhc-CCCCCCCCccceEEEEEcCCHHH
Confidence 6899999999999999999999876622 1344555566666666543211100 011112223445677665 68
Q ss_pred HHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEe
Q 029568 99 VALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCN 142 (191)
Q Consensus 99 vd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~ 142 (191)
++++++++++.|+++...+.. .++|.+.++++||+||+|||.+
T Consensus 78 ~~~~~~~l~~~G~~~~~~~~~-~~~g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 78 VDAVLARAAAAGATIVKPPQD-VFWGGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred HHHHHHHHHhCCCEEecCCcc-CCCCceEEEEECCCCCEEEEee
Confidence 999999999999998765543 3456789999999999999974
No 74
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.65 E-value=3.4e-15 Score=119.46 Aligned_cols=112 Identities=18% Similarity=0.234 Sum_probs=82.2
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCCc--EEEEEecCCCCCCCCCCCCCCCCCCceEEE
Q 029568 16 LLSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYGI--GIHLIENPSIDDFDTVTEPRPINPKDNHIS 93 (191)
Q Consensus 16 i~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~--~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~ 93 (191)
|.+++|++|.|+|+++|++||+++|||++..+.+. ...|+..++. .+.+...+ ..+..|++
T Consensus 1 ~~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~~---~~~~~~~~~~~~~~~l~~~~--------------~~~~~~~~ 63 (286)
T TIGR03213 1 VRGLGYLGIGVSDVDAWREFATEVLGMMVASEGEN---DALYLRLDSRAHRIAVHPGE--------------SDDLAYAG 63 (286)
T ss_pred CceeeEEEEEeCCHHHHHHHHHhccCcccccCCCC---ceEEEEcCCCceEEEEEECC--------------cCCeeeEe
Confidence 56899999999999999999999999998664331 2335444432 33332211 23567999
Q ss_pred EEeCC---HHHHHHHHHhCCCeEEeeeee--cCCceeEEEEEECCCCCEEEEEeec
Q 029568 94 FQCTD---VALVKRRLEDMGMRYVTAVVE--DDGTRVDQVFFHDPDGYMIELCNCE 144 (191)
Q Consensus 94 f~v~d---vd~~~~~l~~~G~~~~~~~~~--~~g~g~~~~~~~DPdG~~iEl~~~~ 144 (191)
|.|++ ++++.++|+++|+++...+.. ....+.+.++|.|||||.|||+...
T Consensus 64 f~V~~~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~~ 119 (286)
T TIGR03213 64 WEVADEAGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYGA 119 (286)
T ss_pred eeeCCHHHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEcc
Confidence 99987 899999999999998765421 1122457899999999999999743
No 75
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.64 E-value=8e-15 Score=117.57 Aligned_cols=111 Identities=21% Similarity=0.234 Sum_probs=82.2
Q ss_pred CcceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCC--cEEEEEecCCCCCCCCCCCCCCCCCCceEE
Q 029568 15 PLLSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYG--IGIHLIENPSIDDFDTVTEPRPINPKDNHI 92 (191)
Q Consensus 15 ~i~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~--~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi 92 (191)
+|++++|+.|.|+|++++++||+++|||++..+.+ ...|+...+ ....+.... ....+..|+
T Consensus 1 ~i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~----~~~~~~~~~~~~~~~l~l~~------------~~~~~~~hi 64 (294)
T TIGR02295 1 NILRTGHVELRVTDLDKSREFYVDLLGFRETESDK----EYIYLRGIEEFQHHSLVLTK------------APSAALSYI 64 (294)
T ss_pred CCceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC----CeEEEeccCcCCceEEEeee------------CCCcCccEE
Confidence 47899999999999999999999999999987644 234443211 111121111 113468899
Q ss_pred EEEeC---CHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeec
Q 029568 93 SFQCT---DVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCE 144 (191)
Q Consensus 93 ~f~v~---dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~ 144 (191)
+|.|+ |+++++++|+++|+++...+. . .+.+.+||+|||||.|||.+..
T Consensus 65 af~v~~~~dl~~~~~~l~~~Gv~v~~~~~--~-~~~~~~~~~DPdG~~iEl~~~~ 116 (294)
T TIGR02295 65 GFRVSKEEDLDKAADFFQKLGHPVRLVRD--G-GQPEALRVEDPFGYPIEFYFEM 116 (294)
T ss_pred EEEeCCHHHHHHHHHHHHhcCCcEEeecC--C-CCceEEEEECCCCCEEEEEEch
Confidence 99995 899999999999999776442 2 2348899999999999999854
No 76
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=3.1e-14 Score=101.08 Aligned_cols=129 Identities=22% Similarity=0.327 Sum_probs=87.4
Q ss_pred CcCcceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecC---------------------CCccceeEEeeCCcEEEEEecC
Q 029568 13 ALPLLSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPS---------------------SFNFNGAWLYNYGIGIHLIENP 71 (191)
Q Consensus 13 ~~~i~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~---------------------~~~~~~~~~~~~~~~l~l~~~~ 71 (191)
++....+.|..+.+.|+.+|..||++++|+.+..... .-.....|+......+++.+..
T Consensus 17 ~~~t~~~~~t~~rvkd~~~Sl~fytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~v~~~~~~~~~ELthn~ 96 (170)
T KOG2944|consen 17 STPTYLLQQTMLRVKDPTGSLKFYTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVSVFVFSRNAKLELTHNW 96 (170)
T ss_pred CCchhhhhhceeecccchhhhhhhhhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCceEEecccCceeeecCC
Confidence 4444556777777777777777777777776655321 0011225666666778887766
Q ss_pred CCCCCC-CCCCCCCCC-CCceEEEEEeCCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEee
Q 029568 72 SIDDFD-TVTEPRPIN-PKDNHISFQCTDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNC 143 (191)
Q Consensus 72 ~~~~~~-~~~~~~~~~-~g~~hi~f~v~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~ 143 (191)
+.+.-. ..-.++... .|.+||||.|+|+++++.++++.|+.+...+. .|..-..+|+.|||||.|||...
T Consensus 97 Gtes~~~~~~~ngN~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~~--dGk~K~iaF~~dpDgywiei~~~ 168 (170)
T KOG2944|consen 97 GTESPPDQAYLNGNKEPRGFGHICIEVDDINSACERLKEKGVRFKKKLK--DGKMKPIAFLHDPDGYWIEIELE 168 (170)
T ss_pred CCCCCcchhhcCCCCCCCccceEEEEeCCHHHHHHHHHHhCceeeecCC--CccccceeEEECCCCCeEEEeec
Confidence 554321 111122333 48999999999999999999999999766653 23323679999999999999854
No 77
>PLN02300 lactoylglutathione lyase
Probab=99.57 E-value=1.7e-13 Score=109.66 Aligned_cols=122 Identities=17% Similarity=0.196 Sum_probs=87.8
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecC--CCccceeEEeeCC----cEEEEEecCCCCCCCCCCCCCCCCCCc
Q 029568 16 LLSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPS--SFNFNGAWLYNYG----IGIHLIENPSIDDFDTVTEPRPINPKD 89 (191)
Q Consensus 16 i~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~--~~~~~~~~~~~~~----~~l~l~~~~~~~~~~~~~~~~~~~~g~ 89 (191)
..++.|+.|.|+|++++.+||+++||+++..... ...+...++...+ ..+++...... .. .....+.
T Consensus 152 ~~~~~~~~l~~~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lel~~~~~~-----~~--~~~g~~~ 224 (286)
T PLN02300 152 PEPLCQVMLRVGDLDRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPEDKTTVLELTYNYGV-----TE--YTKGNAY 224 (286)
T ss_pred CCcceeEEEEeCCHHHHHHHHHhccCCEEEeeecccccceEEEEEecCCCCCccEEEEeecCCC-----Cc--cccCCce
Confidence 4578899999999999999999999999975422 1223333332212 13444332211 01 1224567
Q ss_pred eEEEEEeCCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeec
Q 029568 90 NHISFQCTDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCE 144 (191)
Q Consensus 90 ~hi~f~v~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~ 144 (191)
.|++|.|+|+++++++++++|+++..+|...++.+.+.++|+||||+.++|++..
T Consensus 225 ~~i~~~v~di~~~~~~~~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~~ 279 (286)
T PLN02300 225 AQIAIGTDDVYKTAEAIKLVGGKITREPGPLPGINTKITACLDPDGWKTVFVDNI 279 (286)
T ss_pred eEEEEecCCHHHHHHHHHHcCCeEecCCccCCCCceEEEEEECCCCCEEEEEccc
Confidence 8999999999999999999999998877655544457888999999999999753
No 78
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.53 E-value=6.4e-14 Score=96.41 Aligned_cols=104 Identities=25% Similarity=0.293 Sum_probs=75.1
Q ss_pred eEEEEEeCCHHHHHHHHHHhcCCEEeeecC--CCccceeEEeeCC--cEEEEEecCCCCCCCCCCCCCCCCCCceEEEEE
Q 029568 20 NHVSLLCRSVWDSVRFYEDVLGFVLIKRPS--SFNFNGAWLYNYG--IGIHLIENPSIDDFDTVTEPRPINPKDNHISFQ 95 (191)
Q Consensus 20 ~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~--~~~~~~~~~~~~~--~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~ 95 (191)
+||+|.|+|++++++||+++||+....... .......++..++ ..++|++...+..+ . .....|++||||.
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~~~~~~--~---~~~~~gi~Hia~~ 75 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPLDGDSP--L---DRGGGGIHHIAFE 75 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEESSTTCH--H---HHTSSEEEEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeCCCCcc--c---ccCCCCEEEEEEE
Confidence 699999999999999999999998765422 2334456666665 58899886654211 0 1256789999999
Q ss_pred eCCHHHHHHHHHhCCCeEEeeeeecCCceeEEE
Q 029568 96 CTDVALVKRRLEDMGMRYVTAVVEDDGTRVDQV 128 (191)
Q Consensus 96 v~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~ 128 (191)
|+|++++.++|+++|+++...+...+..|.+.+
T Consensus 76 v~D~d~~~~~l~~~G~~~~~~~~~~g~~g~r~~ 108 (109)
T PF13669_consen 76 VDDLDAAIARLEAQGFRVLDEGPRPGRPGRRVA 108 (109)
T ss_dssp ESHHHHHHHHHHHTTECEEECEEEETGTCSEEE
T ss_pred eCCHHHHHHHHHHCCCEEcccCcccCCCCcEEE
Confidence 999999999999999998876533322233444
No 79
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.46 E-value=2.4e-12 Score=99.45 Aligned_cols=116 Identities=23% Similarity=0.346 Sum_probs=89.9
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCCc-EEEEEecCCCCCCCCCCCCCCCCCCceEEEE
Q 029568 16 LLSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYGI-GIHLIENPSIDDFDTVTEPRPINPKDNHISF 94 (191)
Q Consensus 16 i~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~-~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f 94 (191)
.+.+..+.|.|.|++++..||+++||+++..+.. ...-+..++. -+.|.+.+++ ....+...|..|++|
T Consensus 8 ~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~----~~v~L~vgg~~LL~L~q~~~a------~~~~~~~aGLyH~Af 77 (265)
T COG2514 8 PTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETD----GSVTLGVGGTPLLTLEQFPDA------RRPPPRAAGLYHTAF 77 (265)
T ss_pred CcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccC----ceEEEeeCCEEEEEEEeCCCC------CCCCccccceeeeee
Confidence 4578899999999999999999999999999876 4555666665 3455554543 223356778999999
Q ss_pred EeC---CHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeec
Q 029568 95 QCT---DVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCE 144 (191)
Q Consensus 95 ~v~---dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~ 144 (191)
.++ |+..+..++...|.++... .++ .....+||.||+||-|||+...
T Consensus 78 LlP~r~~L~~~l~hl~~~~~~l~Ga-~DH--~vSEAlYl~DPEGNGIEiYaDr 127 (265)
T COG2514 78 LLPTREDLARVLNHLAEEGIPLVGA-SDH--LVSEALYLEDPEGNGIEIYADR 127 (265)
T ss_pred ecCCHHHHHHHHHHHHhcCCccccc-Ccc--hhheeeeecCCCCCeEEEEecC
Confidence 994 6888889999999987633 233 3457899999999999999863
No 80
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.42 E-value=1.3e-11 Score=86.26 Aligned_cols=117 Identities=21% Similarity=0.205 Sum_probs=81.6
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCCc--EEEEEecCCCCCCCCCCCCCCCCCCceEEE
Q 029568 16 LLSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYGI--GIHLIENPSIDDFDTVTEPRPINPKDNHIS 93 (191)
Q Consensus 16 i~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~--~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~ 93 (191)
...+.|..|.|.|++++++||+++||++.....+........+...+. .=-+...+ ..+...+.-.|.
T Consensus 7 ~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~~~y~~f~~~~~~~gG~l~~~~----------~~~p~~~~~~iy 76 (127)
T COG3324 7 KGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGEMRYAVFPADGAGAGGGLMARP----------GSPPGGGGWVIY 76 (127)
T ss_pred CCccEEEeeecCCHHHHHHHHHHhhCceecccccCCCceEEEEECCCccccceeccCC----------cCCCCCCCEEEE
Confidence 345789999999999999999999999987763322222222222221 00111111 111124556777
Q ss_pred EEeCCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEee
Q 029568 94 FQCTDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNC 143 (191)
Q Consensus 94 f~v~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~ 143 (191)
|.|+|++++.+|++++|.+++.++.+-++ +.+.+.+.||+||+|-|.+.
T Consensus 77 ~~v~did~~l~rv~~~GG~V~~p~~~~p~-~G~~a~~~Dp~Gn~~~l~s~ 125 (127)
T COG3324 77 FAVDDIDATLERVVAAGGKVLRPKTEFPG-GGRIAHFVDPEGNRFGLWSP 125 (127)
T ss_pred EecCChHHHHHHHHhcCCeEEecccccCC-ceEEEEEECCCCCEEEEeec
Confidence 88999999999999999999988766554 45889999999999999864
No 81
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.42 E-value=5.9e-12 Score=84.87 Aligned_cols=122 Identities=18% Similarity=0.208 Sum_probs=81.4
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCceEEEE--Ee
Q 029568 19 LNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDNHISF--QC 96 (191)
Q Consensus 19 l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f--~v 96 (191)
+=|++|.|.|++++++||.++||+..-...+ .-+.+...|+++..-..+..++-. ........--..|++. .+
T Consensus 5 ~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd----~wvdfDfyGHQ~v~Hl~~q~~~~~-~g~V~~~~v~~pHfGvVl~~ 79 (138)
T COG3565 5 PFHLAIPVNDLDETRRFYGEVLGCKEGRSTD----TWVDFDFYGHQVVAHLTPQPDSQG-SGKVDGHGVPPPHFGVVLPV 79 (138)
T ss_pred ceEEeeeccccHHHHhhhhhhcccccccccc----eEEEeeecccEEEEEecCCccccc-CcccCCCCCCCccceEEEEH
Confidence 4499999999999999999999998866543 222233455555444433332110 0001111112345544 55
Q ss_pred CCHHHHHHHHHhCCCeEEeeeeecC---CceeEEEEEECCCCCEEEEEeecC
Q 029568 97 TDVALVKRRLEDMGMRYVTAVVEDD---GTRVDQVFFHDPDGYMIELCNCEN 145 (191)
Q Consensus 97 ~dvd~~~~~l~~~G~~~~~~~~~~~---g~g~~~~~~~DPdG~~iEl~~~~~ 145 (191)
+|+-++.+||+++|+....+|.-+. ...++.+++.||.||.+|+...++
T Consensus 80 edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~fR~ 131 (138)
T COG3565 80 EDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGFRD 131 (138)
T ss_pred HHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeecccc
Confidence 9999999999999999877765321 225799999999999999987654
No 82
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=99.37 E-value=6.9e-12 Score=85.83 Aligned_cols=123 Identities=19% Similarity=0.233 Sum_probs=84.4
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCceEEEEEe-
Q 029568 18 SLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDNHISFQC- 96 (191)
Q Consensus 18 ~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~v- 96 (191)
+...|+|.|.|+++|.+||+. |||+......+. -..+.+.....-+.|+....=..|...+......+.-.-|++.+
T Consensus 3 ~mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde-~a~~mi~~~ni~vMLL~~~~fq~F~~~~i~dt~~s~evli~ls~~ 80 (133)
T COG3607 3 QMIFVNLPVKDLEASKAFYTA-LGFKFNPQFSDE-DAACMIISDNIFVMLLEEARFQTFTKRQIADTTKSREVLISLSAG 80 (133)
T ss_pred eEEEEecchhhHHHHHHHHHH-hCcccCCCcccc-cceeEEEeccEEEEEeccHHhhhhcccccccccCCceEEEEeccC
Confidence 455799999999999999977 999988764322 13344445555555555443222221122223344566788887
Q ss_pred --CCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeec
Q 029568 97 --TDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCE 144 (191)
Q Consensus 97 --~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~ 144 (191)
+++|++.+++.++|.+...++.+.+ ..+..-|.|||||.||+.+-.
T Consensus 81 s~eevd~~v~ka~eaGGk~~~~~~d~g--fMYg~~fqDpDGh~wE~l~m~ 128 (133)
T COG3607 81 SREEVDELVDKALEAGGKPANEPQDEG--FMYGRSFQDPDGHVWEFLWMD 128 (133)
T ss_pred cHHHHHHHHHHHHHcCCCCCCCccccc--cccceeeeCCCCCeEEEEEeC
Confidence 6799999999999998866655443 346677999999999999754
No 83
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.27 E-value=2.3e-11 Score=91.95 Aligned_cols=129 Identities=19% Similarity=0.158 Sum_probs=82.2
Q ss_pred cceeeEEEEEeC--CHHHHHHHHHHhcCCEEeeecCCC----ccceeEEeeC--CcEEEEEecCCCCCCCCCC--CCCCC
Q 029568 16 LLSLNHVSLLCR--SVWDSVRFYEDVLGFVLIKRPSSF----NFNGAWLYNY--GIGIHLIENPSIDDFDTVT--EPRPI 85 (191)
Q Consensus 16 i~~l~hv~i~v~--Dl~~a~~FY~~~LG~~~~~~~~~~----~~~~~~~~~~--~~~l~l~~~~~~~~~~~~~--~~~~~ 85 (191)
+.+++|+++.|+ |++++.+||+++|||+........ ......+... +..++|.....+....... .....
T Consensus 1 ~~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~~~~~~s~~~~fl~~~~ 80 (191)
T cd07250 1 LTRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPASGKRKSQIQEFLEYYG 80 (191)
T ss_pred CceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCCCCCCccHHHHHHHHhC
Confidence 467999999999 999999999999999987753311 1122333332 3455665533210000000 01123
Q ss_pred CCCceEEEEEeCCHHHHHHHHHhCCCeEEeeeeecC-------C-------c----eeEEEEEECCCCCEEEEEeec
Q 029568 86 NPKDNHISFQCTDVALVKRRLEDMGMRYVTAVVEDD-------G-------T----RVDQVFFHDPDGYMIELCNCE 144 (191)
Q Consensus 86 ~~g~~hi~f~v~dvd~~~~~l~~~G~~~~~~~~~~~-------g-------~----g~~~~~~~DPdG~~iEl~~~~ 144 (191)
.+|+.||||.|+|+++++++|+++|++++..|.... + + .....+=+|..|+++++++.+
T Consensus 81 G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P~~yy~~l~~r~~~~~~~~~~~~l~~~~il~d~~~~~~llq~ft~~ 157 (191)
T cd07250 81 GAGVQHIALATDDIFATVAALRARGVEFLPIPDNYYDDLEARLDGILVDEDLDTLRELGILVDRDDGGYLLQIFTKP 157 (191)
T ss_pred CCceeEEEEECCCHHHHHHHHHHcCCeeccCchhhHHHHHHhccccccchhHHHHHHCCEEEECCCCCEEEEEeccC
Confidence 568999999999999999999999999887653110 0 0 112344456677888877654
No 84
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.24 E-value=6.1e-10 Score=78.66 Aligned_cols=110 Identities=13% Similarity=0.010 Sum_probs=74.9
Q ss_pred EEEEe-CCHHHHHHHHHHhcCCEEeeecCC------------CccceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCC
Q 029568 22 VSLLC-RSVWDSVRFYEDVLGFVLIKRPSS------------FNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPK 88 (191)
Q Consensus 22 v~i~v-~Dl~~a~~FY~~~LG~~~~~~~~~------------~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g 88 (191)
..|.+ .|.++|++||+++||+++...... .....+.+..++..+.+....... ......
T Consensus 3 p~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~~l~~~d~~~~~--------~~~~~~ 74 (128)
T cd06588 3 PYLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGGQRLMASDGGPGF--------PFTFGN 74 (128)
T ss_pred eEEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECCEEEEEEcCCCCC--------CCCCCC
Confidence 45667 899999999999999999875321 001133345566666665533211 112334
Q ss_pred ceEEEEEeCC---HHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEE
Q 029568 89 DNHISFQCTD---VALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELC 141 (191)
Q Consensus 89 ~~hi~f~v~d---vd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~ 141 (191)
..++++.|+| +++++++|++.| ++..++.. ..||.+..+++||+|+.|+|.
T Consensus 75 ~~~l~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~-~~~g~~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 75 GISLSVECDSEEEADRLFEALSEGG-TVLMPLQK-TFWSPLFGWVTDRFGVSWQIN 128 (128)
T ss_pred CEEEEEECCCHHHHHHHHHHHhcCC-eEeccchh-cCcccccEEEECCCCCEEEeC
Confidence 5688888875 788889987766 66665544 357889999999999999973
No 85
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=99.19 E-value=1.2e-10 Score=80.80 Aligned_cols=123 Identities=24% Similarity=0.285 Sum_probs=73.3
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccce---eEE-eeCC-cEEEEEecC----CCCCCCCCCCCCCCC-
Q 029568 17 LSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNG---AWL-YNYG-IGIHLIENP----SIDDFDTVTEPRPIN- 86 (191)
Q Consensus 17 ~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~---~~~-~~~~-~~l~l~~~~----~~~~~~~~~~~~~~~- 86 (191)
++++|++|.|+|+++|.+||+++||++............ ... .... ......... ...............
T Consensus 1 ~~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (138)
T COG0346 1 MGIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPG 80 (138)
T ss_pred CceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecC
Confidence 368999999999999999999999999988754221111 111 1110 000000000 000000000000111
Q ss_pred --CCceEEEEEeCC---HHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEe
Q 029568 87 --PKDNHISFQCTD---VALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCN 142 (191)
Q Consensus 87 --~g~~hi~f~v~d---vd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~ 142 (191)
.+..|+++.+++ .......+...|..+..... .. ++ ..+|++||||+.||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~-~~-~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 81 GDLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEP-GR-GG-VHVYFRDPDGILIELAT 138 (138)
T ss_pred chhccCceeEecccccccceEEEeeCCCCCEEEeecC-CC-cc-eEEEEECCCCcEEEeeC
Confidence 347899999987 66777777778888665443 11 22 28999999999999973
No 86
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.18 E-value=4.4e-10 Score=92.64 Aligned_cols=134 Identities=18% Similarity=0.242 Sum_probs=86.7
Q ss_pred CCCcCcceeeEEEEEeC--CHHHHHHHHHHhcCCEEeeecCC-Cccce---eEEee--CCcEEEEEecCCCCCCCCCC--
Q 029568 11 CEALPLLSLNHVSLLCR--SVWDSVRFYEDVLGFVLIKRPSS-FNFNG---AWLYN--YGIGIHLIENPSIDDFDTVT-- 80 (191)
Q Consensus 11 ~~~~~i~~l~hv~i~v~--Dl~~a~~FY~~~LG~~~~~~~~~-~~~~~---~~~~~--~~~~l~l~~~~~~~~~~~~~-- 80 (191)
...+.+.+++|+++.|+ |+++++.||+++|||+.....+- ....+ ..+.. +...++|.............
T Consensus 151 ~~~~~~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~~g~~~i~L~ep~~~~~~s~i~~f 230 (353)
T TIGR01263 151 PPGVGLIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASPDGKVKIPLNEPASGKDKSQIEEF 230 (353)
T ss_pred CCCCCeEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECCCCcEEEEEeccCCCCCCCHHHHH
Confidence 34677899999999999 99999999999999998765321 11111 22332 33556665532110000000
Q ss_pred CCCCCCCCceEEEEEeCCHHHHHHHHHhCCCeEEeeeee-------cCC------c----eeEEEEEECCCCCEEEEEee
Q 029568 81 EPRPINPKDNHISFQCTDVALVKRRLEDMGMRYVTAVVE-------DDG------T----RVDQVFFHDPDGYMIELCNC 143 (191)
Q Consensus 81 ~~~~~~~g~~hi~f~v~dvd~~~~~l~~~G~~~~~~~~~-------~~g------~----g~~~~~~~DPdG~~iEl~~~ 143 (191)
.......|+.||||.|+|+++++++|+++|+.++..|.. +.+ + .....+=.|.+|++++|++.
T Consensus 231 l~~~~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P~~yY~~l~~r~~~~~~~~~~~l~~~~iL~D~d~~g~llqift~ 310 (353)
T TIGR01263 231 LEFYNGAGVQHIALNTDDIVRTVRALRARGVEFLDTPDTYYDLLGERLGGHVKEDLDTLRELNILIDGDEDGYLLQIFTK 310 (353)
T ss_pred HHHcCCCCccEEEEEcCCHHHHHHHHHHcCCccCcCCHHHHHHHHHHhcccccchHHHHHHCCEEEecCCCceEEEEecc
Confidence 011225789999999999999999999999998876521 000 0 11234556788999998876
Q ss_pred c
Q 029568 144 E 144 (191)
Q Consensus 144 ~ 144 (191)
+
T Consensus 311 ~ 311 (353)
T TIGR01263 311 P 311 (353)
T ss_pred C
Confidence 4
No 87
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.15 E-value=1.1e-09 Score=90.32 Aligned_cols=125 Identities=16% Similarity=0.110 Sum_probs=80.9
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEeeec-CCCccceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCceEEEEEe
Q 029568 18 SLNHVSLLCRSVWDSVRFYEDVLGFVLIKRP-SSFNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDNHISFQC 96 (191)
Q Consensus 18 ~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~-~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~v 96 (191)
+++|+.|.|+|++++.+||.+.|||+..... .........+..++..+++.....+.... .........+..||+|.|
T Consensus 2 ~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~~~~~~~~~G~~~l~L~~~~~~~s~~-~~~~~~hg~gv~~iaf~V 80 (353)
T TIGR01263 2 GFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHREKASHVLRQGQINFVLTAPYSSDSPA-ADFAAKHGDGVKDVAFRV 80 (353)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCceeEEEEEeCCEEEEEecCCCCCchH-HHHHHhCCCceEEEEEEE
Confidence 6899999999999999999999999998761 11111122234556677776544321100 000012356889999999
Q ss_pred CCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEee
Q 029568 97 TDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNC 143 (191)
Q Consensus 97 ~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~ 143 (191)
+|++++++++.++|+.+...+...........-+..+.|..+-|++.
T Consensus 81 ~Dv~~a~~~l~~~Ga~~v~~p~~~~~g~~~~~~i~~~g~~~~~~i~~ 127 (353)
T TIGR01263 81 DDAAAAFEAAVERGAEPVQAPVELDEGAVTLATIKGIGDVVHTLVDR 127 (353)
T ss_pred CCHHHHHHHHHHCCCEeccCCccCCCCeEEEEEEECcCCCEEEEEcC
Confidence 99999999999999998876643200112233345555666655553
No 88
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.08 E-value=1.7e-09 Score=82.08 Aligned_cols=139 Identities=17% Similarity=0.252 Sum_probs=94.8
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecC---------CCccceeE----EeeC----CcEEEEEecCCCCCCCCC
Q 029568 17 LSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPS---------SFNFNGAW----LYNY----GIGIHLIENPSIDDFDTV 79 (191)
Q Consensus 17 ~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~---------~~~~~~~~----~~~~----~~~l~l~~~~~~~~~~~~ 79 (191)
.+.-|+++.|.|.++++.||+++|||.+.+..+ +..+++.| +..+ ...++|..+....
T Consensus 16 ~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV~----- 90 (299)
T KOG2943|consen 16 RRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGVS----- 90 (299)
T ss_pred hheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCcc-----
Confidence 456699999999999999999999999988643 23334444 2221 1345555544321
Q ss_pred CCCCCCCCCceEEEEEeCCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeecCCCCcc----cccCC
Q 029568 80 TEPRPINPKDNHISFQCTDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCENIPIIP----LYSCS 155 (191)
Q Consensus 80 ~~~~~~~~g~~hi~f~v~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~~~~~~~----~~~~~ 155 (191)
...-..++.||.+.++|+-...+.+...|.+ +.|.-.+++.|||||.++|.+..+.+.+- ...++
T Consensus 91 --~YelGndfg~i~I~s~dv~~~ve~v~~p~~~---------~~g~~~~~v~dPdGykF~l~~~~p~s~pv~~V~l~Vgd 159 (299)
T KOG2943|consen 91 --KYELGNDFGGITIASDDVFSKVEKVNAPGGK---------GSGCGIAFVKDPDGYKFYLIDRGPQSDPVLQVMLNVGD 159 (299)
T ss_pred --ceeccCCcccEEEeHHHHHHHHHHhcCcCCc---------ccceEEEEEECCCCcEEEEeccCCCCCCeEEEEEEehh
Confidence 2234567889999998888877777665542 12335588999999999999854433322 33378
Q ss_pred ccccchhhhhhhhhcc
Q 029568 156 FKPRMGSFKRAAASTC 171 (191)
Q Consensus 156 ~~~r~~~~~~~~~~~~ 171 (191)
+++....|....++..
T Consensus 160 L~ks~kyw~~~lgM~i 175 (299)
T KOG2943|consen 160 LQKSIKYWEKLLGMKI 175 (299)
T ss_pred HHHHHHHHHHHhCcch
Confidence 9999888988875544
No 89
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.02 E-value=3.5e-08 Score=70.02 Aligned_cols=114 Identities=19% Similarity=0.094 Sum_probs=78.8
Q ss_pred EEEEeC-CHHHHHHHHHHhcCCEEeeecCCCc------------cceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCC
Q 029568 22 VSLLCR-SVWDSVRFYEDVLGFVLIKRPSSFN------------FNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPK 88 (191)
Q Consensus 22 v~i~v~-Dl~~a~~FY~~~LG~~~~~~~~~~~------------~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g 88 (191)
..|... |.++|++||+++||.++..+....+ ...+-+.-++..+.+...... ......+
T Consensus 4 PYl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g~~im~sd~~~~--------~~~~~~~ 75 (136)
T COG2764 4 PYLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGGSTIMLSDAFPD--------MGATEGG 75 (136)
T ss_pred eEEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECCEEEEEecCCCc--------cCcccCC
Confidence 456778 9999999999999999887632111 122334445555555443321 1111222
Q ss_pred --ceEEEEEeCCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeec
Q 029568 89 --DNHISFQCTDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCE 144 (191)
Q Consensus 89 --~~hi~f~v~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~ 144 (191)
..-|.+.++|++++++++.+.|+++..+..+. -||.+...++||.|+.|-|....
T Consensus 76 ~~s~~l~~~~~d~da~f~~a~~aGa~v~mpl~~~-fwG~r~G~v~D~fGv~W~l~~~~ 132 (136)
T COG2764 76 GTSLSLDLYVEDVDAVFERAAAAGATVVMPLEDT-FWGDRYGQVTDPFGVVWMLNTPV 132 (136)
T ss_pred CeeEEEEEEehHHHHHHHHHHhcCCeEEecchhc-CcccceEEEECCCCCEEEEecCc
Confidence 23566667889999999999998888776544 37889999999999999998754
No 90
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.96 E-value=5.7e-09 Score=84.10 Aligned_cols=104 Identities=16% Similarity=0.157 Sum_probs=71.4
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCceEEEEEe--
Q 029568 19 LNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDNHISFQC-- 96 (191)
Q Consensus 19 l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~v-- 96 (191)
..||+|.|.|+++|.+||+++|++.. ...+ ....+ ++.-+.++.... + .......-+|+.+
T Consensus 248 ~IfVNLpV~DL~rS~~FYt~LF~~n~-Fsde----~a~cm--~dtI~vMllt~~-D---------~~~~~evLl~Ls~~S 310 (357)
T PRK01037 248 TFSVVLEVQDLRRAKKFYSKMFGLEC-WDGD----KLFLL--GKTSLYLQQTKA-E---------KKNRGTTTLSLELEC 310 (357)
T ss_pred eEEEEeeeCCHHHHHHHHHHHhCCCC-CCCC----ccccc--cCcEEEEEecCC-C---------CCCcceEEEEeccCC
Confidence 45999999999999999999988875 4333 11212 343333333221 1 2234456778887
Q ss_pred -CCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEee
Q 029568 97 -TDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNC 143 (191)
Q Consensus 97 -~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~ 143 (191)
+++|++.+++.++|......+ .+.|+ .--|.|||||.||+++.
T Consensus 311 re~VD~lv~~A~aaGG~~~~~~-~D~Gf---~rsf~D~DGH~WEi~~~ 354 (357)
T PRK01037 311 EHDFVRFLRRWEMLGGELGEQA-DGHFP---LRLVFDLDGHIWVVSCV 354 (357)
T ss_pred HHHHHHHHHHHHHcCCCCCCCc-ccccC---cceeECCCCCEEEEEEE
Confidence 579999999999999754444 33444 34589999999999975
No 91
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=98.85 E-value=3.3e-08 Score=75.21 Aligned_cols=116 Identities=19% Similarity=0.290 Sum_probs=79.5
Q ss_pred eeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEee--CCcEEEEEecCCCCCCCCCCCCCCCCCCceEEEEE
Q 029568 18 SLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYN--YGIGIHLIENPSIDDFDTVTEPRPINPKDNHISFQ 95 (191)
Q Consensus 18 ~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~--~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~ 95 (191)
.+.+|.+.|.|+++|++||+++|||++....... ..+.+.. ....++|....... ....++..|+|.
T Consensus 149 pv~~V~l~VgdL~ks~kyw~~~lgM~ilekeek~--t~~~mgYgd~q~~LElt~~~~~i---------d~~kg~griafa 217 (299)
T KOG2943|consen 149 PVLQVMLNVGDLQKSIKYWEKLLGMKILEKEEKY--TRARMGYGDEQCVLELTYNYDVI---------DRAKGFGRIAFA 217 (299)
T ss_pred CeEEEEEEehhHHHHHHHHHHHhCcchhhhhhhh--hhhhhccCCcceEEEEEeccCcc---------cccccceeEEEe
Confidence 4678999999999999999999999998743211 1222222 22457777666432 234567777777
Q ss_pred e--CCHHHHHHHHHhCCCeEEeeeee--cCC-ceeEEEEEECCCCCEEEEEeec
Q 029568 96 C--TDVALVKRRLEDMGMRYVTAVVE--DDG-TRVDQVFFHDPDGYMIELCNCE 144 (191)
Q Consensus 96 v--~dvd~~~~~l~~~G~~~~~~~~~--~~g-~g~~~~~~~DPdG~~iEl~~~~ 144 (191)
+ +++..+.+.++..+..+..+... .++ .....+.+.||||+.|.|+...
T Consensus 218 ip~d~~~~l~e~iK~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfVdde 271 (299)
T KOG2943|consen 218 IPTDDLPKLQEAIKSANGTILTPLTTLDTPGKATVQVVILADPDGHEICFVDDE 271 (299)
T ss_pred ccccccccHHHHHHHhccccccceeeccCCCcceeEEEEEECCCCceEEEeccH
Confidence 6 77888888888876665544332 222 2567788999999999999643
No 92
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.82 E-value=1.5e-08 Score=84.05 Aligned_cols=131 Identities=14% Similarity=0.183 Sum_probs=85.9
Q ss_pred cCcceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCC--C-----ccceeEEeeCC--cEEEEEecCCC-CCCCCCC--C
Q 029568 14 LPLLSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSS--F-----NFNGAWLYNYG--IGIHLIENPSI-DDFDTVT--E 81 (191)
Q Consensus 14 ~~i~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~--~-----~~~~~~~~~~~--~~l~l~~~~~~-~~~~~~~--~ 81 (191)
..+.+++|+++.|+++++++.||+++|||+....... . ......+..++ ..+.|...... ..-+... .
T Consensus 176 ~gl~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~g~v~ipLnEP~~~~~~~SqI~eFL 255 (398)
T PLN02875 176 YGLRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNNEMVLLPLNEPTFGTKRKSQIQTYL 255 (398)
T ss_pred CCcceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCCCcEEEEeccCCCCCCCcChHHHHH
Confidence 3478999999999999999999999999988764321 1 11233344433 45666554321 0000000 0
Q ss_pred CCCCCCCceEEEEEeCCHHHHHHHHHhC----CCeEEeeee--------ecCC-------c----eeEEEEEECCCCCEE
Q 029568 82 PRPINPKDNHISFQCTDVALVKRRLEDM----GMRYVTAVV--------EDDG-------T----RVDQVFFHDPDGYMI 138 (191)
Q Consensus 82 ~~~~~~g~~hi~f~v~dvd~~~~~l~~~----G~~~~~~~~--------~~~g-------~----g~~~~~~~DPdG~~i 138 (191)
.....+|++||||.|+|+.++.++|+++ |++++..|. .+-+ + .....+=.|.+|+++
T Consensus 256 ~~~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~Pp~~YYd~L~~R~~~~l~~e~~~~L~~~~ILvD~d~~G~LL 335 (398)
T PLN02875 256 EHNEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPPPPTYYKNLKKRVGDVLTEEQIKECEELGILVDKDDQGVLL 335 (398)
T ss_pred HhcCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCChHHHHHHHHHHhccCCChhhHHHHHHcCEEEecCCCceEE
Confidence 1223579999999999999999999999 999887541 0110 0 122445567789999
Q ss_pred EEEeec
Q 029568 139 ELCNCE 144 (191)
Q Consensus 139 El~~~~ 144 (191)
+|++.+
T Consensus 336 QIFTkp 341 (398)
T PLN02875 336 QIFTKP 341 (398)
T ss_pred EEeccc
Confidence 999764
No 93
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=98.70 E-value=9.7e-08 Score=75.45 Aligned_cols=129 Identities=14% Similarity=0.130 Sum_probs=83.3
Q ss_pred eecCCCCCcCcceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecC----CCccceeEEeeCCcEEEEEecCCCCCCCCCCC
Q 029568 6 EEVSDCEALPLLSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPS----SFNFNGAWLYNYGIGIHLIENPSIDDFDTVTE 81 (191)
Q Consensus 6 ~~~~~~~~~~i~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~----~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~ 81 (191)
.+..+++..++.+++||.+.|.|...++.||+..|||+.....+ .......-+..+.....+....++...-+-.-
T Consensus 5 ~k~~k~~~g~~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g~~vFv~~s~~~p~~~~~G~~ 84 (381)
T KOG0638|consen 5 DKGAKPEAGKFLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQGKIVFVFNSAYNPDNSEYGDH 84 (381)
T ss_pred cCCCCccccceeeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcCCEEEEEecCCCCCchhhhhh
Confidence 34567788889999999999999999999999999999987432 11111111233334444444333321100000
Q ss_pred CCCCCCCceEEEEEeCCHHHHHHHHHhCCCeEEeeeeecCC-c-eeEEEEEECCC
Q 029568 82 PRPINPKDNHISFQCTDVALVKRRLEDMGMRYVTAVVEDDG-T-RVDQVFFHDPD 134 (191)
Q Consensus 82 ~~~~~~g~~hi~f~v~dvd~~~~~l~~~G~~~~~~~~~~~g-~-g~~~~~~~DPd 134 (191)
-.....++..+||+|+|.+++.+.++++|..+..+|+.... . -.+.+.+..+-
T Consensus 85 l~~HgdgvkdvafeVeD~da~~~~~va~Ga~v~~~p~~~~da~G~v~~A~l~tyg 139 (381)
T KOG0638|consen 85 LVKHGDGVKDVAFEVEDADAIFQEAVANGAKVVRPPWEESDAQGAVTYAVLKTYG 139 (381)
T ss_pred hhhcccchhceEEEecchHHHHHHHHHcCCcccCCcceeeccCCcEEEEEEeccc
Confidence 01223457789999999999999999999998888754321 1 24555555554
No 94
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=98.69 E-value=2.2e-07 Score=72.22 Aligned_cols=78 Identities=21% Similarity=0.230 Sum_probs=59.3
Q ss_pred CcceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCceEEEE
Q 029568 15 PLLSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDNHISF 94 (191)
Q Consensus 15 ~i~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f 94 (191)
.-+.++||+|.|.|++++..||+++|||+...+.+ ...|+..++...|+..+.+... ..........|...+.+
T Consensus 165 ~~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~~~----~A~F~a~G~YHHHia~N~W~s~--~~~~~~~~~~GLa~~~i 238 (265)
T COG2514 165 AGTIIGHVHLKVADLEEAEQFYEDVLGLEVTARGP----SALFLASGDYHHHLAANTWNSR--GARPRNANASGLAWLEI 238 (265)
T ss_pred CCcEEeEEEEEeCCHHHHHHHHHHhcCCeeeecCC----cceEEecCCcceeEEEeccccC--CCCCCCCCCCCcceEEE
Confidence 35679999999999999999999999999998844 5778888887777766655421 12333345667888888
Q ss_pred EeCC
Q 029568 95 QCTD 98 (191)
Q Consensus 95 ~v~d 98 (191)
.+.+
T Consensus 239 ~~~~ 242 (265)
T COG2514 239 HTPD 242 (265)
T ss_pred EcCC
Confidence 8766
No 95
>PRK10148 hypothetical protein; Provisional
Probab=98.68 E-value=2.6e-06 Score=61.67 Aligned_cols=114 Identities=15% Similarity=0.018 Sum_probs=72.2
Q ss_pred EEEEeC-CHHHHHHHHHHhcCCEEeeecC----------------------CCccceeEEeeCCcEEEEEecCCCCCCCC
Q 029568 22 VSLLCR-SVWDSVRFYEDVLGFVLIKRPS----------------------SFNFNGAWLYNYGIGIHLIENPSIDDFDT 78 (191)
Q Consensus 22 v~i~v~-Dl~~a~~FY~~~LG~~~~~~~~----------------------~~~~~~~~~~~~~~~l~l~~~~~~~~~~~ 78 (191)
..|... |.++|++||+++||.++..... ......+.+..++..+.+.....
T Consensus 5 pyL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g~~lm~sD~~~------ 78 (147)
T PRK10148 5 PYLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAGSDIMMSDAIP------ 78 (147)
T ss_pred EEEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECCEEEEEECCCC------
Confidence 455564 8999999999999998864310 01111233444555444433211
Q ss_pred CCCCCCCCCCceEEEEEeCCHHH---HHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeecCC
Q 029568 79 VTEPRPINPKDNHISFQCTDVAL---VKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCENI 146 (191)
Q Consensus 79 ~~~~~~~~~g~~hi~f~v~dvd~---~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~~~ 146 (191)
.. .......++++.++|.++ ++++| +.|.++..++.+. .||.+...++||.|+.|.|......
T Consensus 79 --~~-~~~~~~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~-~wg~~~g~v~D~fGi~W~l~~~~~~ 144 (147)
T PRK10148 79 --SG-KAHYSGFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQET-FWAHGFGKVTDKFGVPWMINVVKQQ 144 (147)
T ss_pred --Cc-CCCCCeEEEEEECCCHHHHHHHHHHh-hCCCEEEecchhc-chhhccEEEECCCCCEEEEEecCCC
Confidence 00 111134577778788776 55666 5788877766443 4788889999999999999876443
No 96
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.62 E-value=4e-06 Score=57.44 Aligned_cols=113 Identities=21% Similarity=0.175 Sum_probs=64.8
Q ss_pred eEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCC--cEEEEEecCCCCCCCCCCCCCCCCCCceEEEEEeC
Q 029568 20 NHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYG--IGIHLIENPSIDDFDTVTEPRPINPKDNHISFQCT 97 (191)
Q Consensus 20 ~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~--~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~v~ 97 (191)
.+-+|.|.|.+...+||++.|||++..+.. ..+++.... ..+.|-..+... ...-......++|.+.|+
T Consensus 2 ~~PvlRVnnR~~ni~FY~~~LGfkll~EEn----a~a~lg~~~~~erlvlEESP~~r-----tr~V~G~KKl~~ivIkv~ 72 (125)
T PF14506_consen 2 IIPVLRVNNRDLNIDFYQKTLGFKLLSEEN----ALAILGDQQKEERLVLEESPSMR-----TRAVEGPKKLNRIVIKVP 72 (125)
T ss_dssp EEEEEEESSHHHHHHHHTTTT--EEEEEET----TEEEEE-TT--EEEEEEE--TTT------B--SSS-SEEEEEEEES
T ss_pred cCceEEEcCHHHhHHHHHhccCcEEeeccc----cEEEecCCCCceEEEEecCCccc-----cccccCcceeeEEEEEcC
Confidence 467899999999999999999999998865 455554432 234454444321 111123446889999999
Q ss_pred CHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeecC
Q 029568 98 DVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCEN 145 (191)
Q Consensus 98 dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~~ 145 (191)
+..++. .|.++|.++..-.. |...+.+-..+|+|.+|.|....+
T Consensus 73 ~~~EIe-~LLar~~~~~~l~k---g~~gyAfe~vSPEgd~~llhaEdd 116 (125)
T PF14506_consen 73 NPKEIE-ALLARGAQYDRLYK---GKNGYAFEAVSPEGDRFLLHAEDD 116 (125)
T ss_dssp SHHHHH-HHHHC-S--SEEEE----SSSEEEEEE-TT--EEEEE--S-
T ss_pred CHHHHH-HHHhcccccceeEE---cCCceEEEEECCCCCEEEEEEcCC
Confidence 866654 45566766433322 223366778899999999997654
No 97
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=98.41 E-value=2.5e-06 Score=60.91 Aligned_cols=124 Identities=17% Similarity=0.189 Sum_probs=80.2
Q ss_pred CcCcceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCceEE
Q 029568 13 ALPLLSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDNHI 92 (191)
Q Consensus 13 ~~~i~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi 92 (191)
|+.+.++.+|.+.++|.+++..|++ .|||+.+.+.... ....+..++..+.+-..+. ++. ..-.....+++.-|
T Consensus 4 P~g~~G~dFvEFa~~~~~~l~~~~~-~lGF~~~a~hrsk--~v~l~rQG~I~~vln~ep~--s~a-~~~~~~HG~sv~ai 77 (139)
T PF14696_consen 4 PLGLDGFDFVEFAVPDAQALAQLFT-ALGFQPVARHRSK--DVTLYRQGDINFVLNSEPD--SFA-AEFAAQHGPSVCAI 77 (139)
T ss_dssp TT-EEEEEEEEEE-SSTTSCHHHHC-CCCEEEECCECCC--SEEEEEETTEEEEEEEEST--SCH-HHHHHHHSSEEEEE
T ss_pred CCCCCCeEEEEEecCCHHHHHHHHH-HhCcceEEecCCc--ceEEEEeCCEEEEEeCCCc--chH-HHHHHhcCCEEEEE
Confidence 5778899999999999777777775 5999999875321 2333455666666644332 110 00001235678999
Q ss_pred EEEeCCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeec
Q 029568 93 SFQCTDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCE 144 (191)
Q Consensus 93 ~f~v~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~ 144 (191)
+|.|+|..++++++.++|.+....+.... ....--++.+.|.++-|++..
T Consensus 78 afrV~Da~~A~~rA~~~GA~~~~~~~~~~--e~~~paI~g~G~sl~yfVdr~ 127 (139)
T PF14696_consen 78 AFRVDDAAAAYERAVALGAEPVQEPTGPG--ELNIPAIRGIGGSLHYFVDRY 127 (139)
T ss_dssp EEEES-HHHHHHHHHHTT--EEEEEEETT---BEEEEEE-CCC-EEEEEE--
T ss_pred EEEeCCHHHHHHHHHHcCCcCcccCCCCC--cEeeeeEEccCCCEEEEEecC
Confidence 99999999999999999999887764332 245567899999999999863
No 98
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.39 E-value=8.8e-06 Score=67.75 Aligned_cols=126 Identities=13% Similarity=0.100 Sum_probs=82.5
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEeeecCC----CccceeEEeeCCcEEEEEecCCCC--C-----CCCCCCC-----
Q 029568 19 LNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSS----FNFNGAWLYNYGIGIHLIENPSID--D-----FDTVTEP----- 82 (191)
Q Consensus 19 l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~----~~~~~~~~~~~~~~l~l~~~~~~~--~-----~~~~~~~----- 82 (191)
++||.++|.|..++..||+..|||+.+..... .......+..++..+.+.....+. . -...+.+
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g~i~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSGDLVFLFTAPYSPKIGAGDDDPASTAPHPSFSSD 80 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEeCCEEEEEeCCCCCccccccccccccccccccCcH
Confidence 58999999999999999999999999876431 111122334445555444432120 0 0000000
Q ss_pred ------CCCCCCceEEEEEeCCHHHHHHHHHhCCCeEEeeeeecCC---c-eeEEEEEECCCCCEEEEEeec
Q 029568 83 ------RPINPKDNHISFQCTDVALVKRRLEDMGMRYVTAVVEDDG---T-RVDQVFFHDPDGYMIELCNCE 144 (191)
Q Consensus 83 ------~~~~~g~~hi~f~v~dvd~~~~~l~~~G~~~~~~~~~~~g---~-g~~~~~~~DPdG~~iEl~~~~ 144 (191)
.....++.-|+|.|+|++++++++.++|......+..... . .....-+..+.|..+-|++..
T Consensus 81 ~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~G~~~h~lVdr~ 152 (398)
T PLN02875 81 AARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELYGDVVLRYVSYK 152 (398)
T ss_pred HHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEccCCcEEEEEccC
Confidence 1234678899999999999999999999998776643211 1 234455778888888888754
No 99
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=98.26 E-value=2.1e-05 Score=58.47 Aligned_cols=126 Identities=20% Similarity=0.176 Sum_probs=62.7
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEeeecC--CCccceeEEeeCCcEEEEEecCCCCCCCCCCCC----C-CCCCCceE
Q 029568 19 LNHVSLLCRSVWDSVRFYEDVLGFVLIKRPS--SFNFNGAWLYNYGIGIHLIENPSIDDFDTVTEP----R-PINPKDNH 91 (191)
Q Consensus 19 l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~--~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~----~-~~~~g~~h 91 (191)
|+|+.+.|+|++++.++|++.|||.+..... ..+.....+..++..+|++.............. . ....|...
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~~YlEli~i~~~~~~~~~~~~~~~~~~~~~~g~~~ 80 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGDGYLELIAIDPEAPAPDRGRWFGLDRLAGGEGLYG 80 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SSSEEEEEEES-HHHSTGGGT-TTTHHHHT--EEEE
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCCceEEEEEeCCcccccccccceechhhcCCCCeEE
Confidence 6899999999999999998889999986532 222334444445559999885432110000000 0 13567789
Q ss_pred EEEEeCCHHHHHHHHHhCCCeEEeeeeecCCc-eeEEEEEECCC----CCEEEEEeec
Q 029568 92 ISFQCTDVALVKRRLEDMGMRYVTAVVEDDGT-RVDQVFFHDPD----GYMIELCNCE 144 (191)
Q Consensus 92 i~f~v~dvd~~~~~l~~~G~~~~~~~~~~~g~-g~~~~~~~DPd----G~~iEl~~~~ 144 (191)
+|+.++|+++..+++++.|+........+++. ..+.+++.+++ +..=+++++.
T Consensus 81 ~~l~t~d~~~~~~~l~~~G~~~~~r~~~dG~~~~w~~~~~~~~~~p~~~~~Pf~i~~~ 138 (175)
T PF13468_consen 81 WALRTDDIEAVAARLRAAGLDAGSRVRPDGGDLRWRLAFPEDGALPFGGLLPFFIQWE 138 (175)
T ss_dssp EEEE-S-HHHHHHHHHTTT-EEEEEEEEEE-EEEEEEEEEE-SS---SS---EEEEES
T ss_pred EEEecCCHHHHHHHHHhcCCCCCCcCcCCCCcceEEEEEeCCcccccCCCCcEEEEeC
Confidence 99999999999999999998622211111111 22445566642 4555666554
No 100
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=97.86 E-value=1.4e-05 Score=64.43 Aligned_cols=105 Identities=17% Similarity=0.189 Sum_probs=67.7
Q ss_pred CcCcceeeEEEEEe--CCHHHHHHHHHHhcCCEEeeecC-CCccc---eeEEeeC-C-cEEEEEecCCCCCCCCCCCCCC
Q 029568 13 ALPLLSLNHVSLLC--RSVWDSVRFYEDVLGFVLIKRPS-SFNFN---GAWLYNY-G-IGIHLIENPSIDDFDTVTEPRP 84 (191)
Q Consensus 13 ~~~i~~l~hv~i~v--~Dl~~a~~FY~~~LG~~~~~~~~-~~~~~---~~~~~~~-~-~~l~l~~~~~~~~~~~~~~~~~ 84 (191)
...+..++|++..| ..++.+..||+++|||+....-+ ..... ..-+.+. | ..+.|-...+..+..-.-....
T Consensus 162 ~~g~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~tgl~Sram~Sp~G~vrlplN~s~~~~sqi~efl~~y 241 (363)
T COG3185 162 GVGLTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPITGLRSRAMVSPCGKVRLPLNESADDKSQIGEFLREY 241 (363)
T ss_pred ccCceeechhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCcccEEEeeEecCCCcEEeecccCCCchhHHHHHHHHh
Confidence 34467899999887 58999999999999999887522 11111 1222222 2 2344433332211000000113
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHhCCCeEEeee
Q 029568 85 INPKDNHISFQCTDVALVKRRLEDMGMRYVTAV 117 (191)
Q Consensus 85 ~~~g~~hi~f~v~dvd~~~~~l~~~G~~~~~~~ 117 (191)
...|+.||+|.++|+-++.++++++|+++...|
T Consensus 242 ~G~GIQHIA~~T~dI~~tv~~lr~rG~~fl~ip 274 (363)
T COG3185 242 RGEGIQHIAFGTDDIYATVAALRERGVKFLPIP 274 (363)
T ss_pred CCCcceEEEecccHHHHHHHHHHHcCCccCCCc
Confidence 456899999999999999999999999988754
No 101
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=97.28 E-value=0.0005 Score=54.87 Aligned_cols=131 Identities=18% Similarity=0.173 Sum_probs=82.6
Q ss_pred CCcCcceeeEEEEEeC--CHHHHHHHHHHhcCCEEeeecCCCccc-------eeEEeeCCcEEEEEecCCCCCCCCCC--
Q 029568 12 EALPLLSLNHVSLLCR--SVWDSVRFYEDVLGFVLIKRPSSFNFN-------GAWLYNYGIGIHLIENPSIDDFDTVT-- 80 (191)
Q Consensus 12 ~~~~i~~l~hv~i~v~--Dl~~a~~FY~~~LG~~~~~~~~~~~~~-------~~~~~~~~~~l~l~~~~~~~~~~~~~-- 80 (191)
+.+.+.+++|++..++ .++.+.+||.+.|||-.....++.... ...+...+..+.+-.+. +.+-....
T Consensus 172 ~~~~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~te~SaLrs~vlan~~esi~mpinE-p~~G~k~ksQ 250 (381)
T KOG0638|consen 172 PKGGLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHTEYSALRSIVLANYEESIKMPINE-PAPGKKKKSQ 250 (381)
T ss_pred CccceeehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhhHHHHHHHHHHhcCCccEEEeccC-CCCCCccHHH
Confidence 3477889999999999 678999999999999776654322111 11122333333332222 11100000
Q ss_pred ----CCCCCCCCceEEEEEeCCHHHHHHHHHhCCCeEEeeeeec-------CC-------------ceeEEEEEECCCCC
Q 029568 81 ----EPRPINPKDNHISFQCTDVALVKRRLEDMGMRYVTAVVED-------DG-------------TRVDQVFFHDPDGY 136 (191)
Q Consensus 81 ----~~~~~~~g~~hi~f~v~dvd~~~~~l~~~G~~~~~~~~~~-------~g-------------~g~~~~~~~DPdG~ 136 (191)
......+|+.||++.++|+-++.+.++++|.+++..|..- -. .......=.|-.|+
T Consensus 251 Iqeyv~y~gG~GvQHiaL~tedIi~Ai~~lr~rG~eFLs~Ps~YYqnl~erl~~~~~~vked~~~l~el~ILvD~De~gy 330 (381)
T KOG0638|consen 251 IQEYVEYHGGAGVQHIALNTEDIIEAIRGLRARGGEFLSPPSTYYQNLKERLSTSIRKVKEDIKLLEELGILVDFDENGY 330 (381)
T ss_pred HHHHHHhcCCCceeeeeecchHHHHHHHHHHhcCCccccCCHHHHHhHHHHhhhhhhhhhccHHHHHHcCeEEecCCCcE
Confidence 0124467899999999999999999999999988655210 00 01123444577899
Q ss_pred EEEEEee
Q 029568 137 MIELCNC 143 (191)
Q Consensus 137 ~iEl~~~ 143 (191)
+++|+..
T Consensus 331 LLQIFTK 337 (381)
T KOG0638|consen 331 LLQIFTK 337 (381)
T ss_pred Eeeeecc
Confidence 9999954
No 102
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=97.02 E-value=0.013 Score=47.59 Aligned_cols=117 Identities=17% Similarity=0.205 Sum_probs=74.3
Q ss_pred CCCcCcceeeEEEEEeCCH-HHHHHHHHHhcCCEEeeecCCCccceeEEe-eCCcEEEEEecCCCCCCCCCCCCCCCCCC
Q 029568 11 CEALPLLSLNHVSLLCRSV-WDSVRFYEDVLGFVLIKRPSSFNFNGAWLY-NYGIGIHLIENPSIDDFDTVTEPRPINPK 88 (191)
Q Consensus 11 ~~~~~i~~l~hv~i~v~Dl-~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~~~~~~~~~g 88 (191)
..|+...++.+|.+.|+|. ++...++ ..|||....+... ..+.+. .++.++.+ +..+.++. ..-.....++
T Consensus 15 ~~P~~~~GfeFvEf~~~d~~~~l~~l~-~~lGF~~~~~Hrs---k~v~l~rQGdinlvv--n~~~~s~a-~~f~~~Hgps 87 (363)
T COG3185 15 ANPEGTDGFEFVEFAVPDPQEALGALL-GQLGFTAVAKHRS---KAVTLYRQGDINLVV--NAEPDSFA-AEFLDKHGPS 87 (363)
T ss_pred cCCCCCCceeEEEEecCCHHHHHHHHH-HHhCccccccccc---cceeEEEeCCEEEEE--cCCCcchh-hHHHHhcCCc
Confidence 3455588999999999999 5555555 5599999876432 233343 34444444 33333220 1111245667
Q ss_pred ceEEEEEeCCHHHHHHHHHhCCCeEEeeeee-----c---CCceeEEEEEECCC
Q 029568 89 DNHISFQCTDVALVKRRLEDMGMRYVTAVVE-----D---DGTRVDQVFFHDPD 134 (191)
Q Consensus 89 ~~hi~f~v~dvd~~~~~l~~~G~~~~~~~~~-----~---~g~g~~~~~~~DPd 134 (191)
..-++|.|+|...++++..+.|.+....+.. . .+.|...+|+.|.+
T Consensus 88 ~~a~a~~V~DA~~A~a~A~a~gA~~~~~~~g~~e~~ipai~giggsllyfvd~~ 141 (363)
T COG3185 88 ACAMAFRVDDAEQALARALALGARTIDTEIGAGEVDIPAIRGIGGSLLYFVDRY 141 (363)
T ss_pred hheeEEeeCCHHHHHHHHHHcCCccccCCCCCccccccceeccCCcEEEEeccC
Confidence 8899999999999999999999964443321 0 12244667777777
No 103
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=96.87 E-value=0.032 Score=38.63 Aligned_cols=94 Identities=15% Similarity=0.106 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHhcCCEEeee---cCC------CccceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCceEEEEEeC
Q 029568 27 RSVWDSVRFYEDVLGFVLIKR---PSS------FNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDNHISFQCT 97 (191)
Q Consensus 27 ~Dl~~a~~FY~~~LG~~~~~~---~~~------~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~v~ 97 (191)
.+.++|.+||+++||-..+.. .+. .....+.+..++..+........ ........|++.++
T Consensus 11 g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~g~~lm~~D~~~~----------~~~~~~~sl~i~~~ 80 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIGGQKLMASDGGPD----------FPFGNNISLCIECD 80 (116)
T ss_dssp S-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEETTEEEEEEEESTS--------------TTEEEEEEES
T ss_pred CCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEECCeEEEEECCCCC----------CCCCCcEEEEEEcC
Confidence 689999999999999533322 111 01123344556666655554311 11223467777776
Q ss_pred C---HHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEE
Q 029568 98 D---VALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELC 141 (191)
Q Consensus 98 d---vd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~ 141 (191)
+ +++++++|.+.|. . ++ +...++|..|..|.|+
T Consensus 81 ~~ee~~~~f~~Ls~gG~---------~-~~-~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 81 DEEEIDRIFDKLSEGGQ---------W-FS-RYGWVTDKFGVSWQIV 116 (116)
T ss_dssp SHHHHHHHHHHHHTTTE---------T-CC-EEEEEE-TTS-EEEEE
T ss_pred CHHHHHHHHHHHHcCCC---------c-cc-eeEEEEeCCCCEEEeC
Confidence 5 6667788877766 1 23 6778999999999885
No 104
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=96.71 E-value=0.011 Score=40.03 Aligned_cols=55 Identities=20% Similarity=0.233 Sum_probs=42.8
Q ss_pred eEEEEEeCCHHHHHHHHHh-CCCeEEeeeeecCCceeEEEEEECCCC-CEEEEEeecC
Q 029568 90 NHISFQCTDVALVKRRLED-MGMRYVTAVVEDDGTRVDQVFFHDPDG-YMIELCNCEN 145 (191)
Q Consensus 90 ~hi~f~v~dvd~~~~~l~~-~G~~~~~~~~~~~g~g~~~~~~~DPdG-~~iEl~~~~~ 145 (191)
+||+|.|+|++++.+.+.+ .|+........ .+.+.+..++..++| ..|||+++..
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~-~~~~v~~~~~~~~~~~~~iELi~p~~ 57 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRD-EPQGVRVAFLYLGDGPVQIELIQPLD 57 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEE-GCTTEEEEEEEETTETEEEEEEEESS
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEec-CCCCEEEEEEEeCCCcEEEEEEEeCC
Confidence 6999999999999999998 79886544333 334567788888988 6899999754
No 105
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=96.60 E-value=0.0082 Score=40.29 Aligned_cols=92 Identities=20% Similarity=0.242 Sum_probs=45.7
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCceEEEEEeC-
Q 029568 19 LNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDNHISFQCT- 97 (191)
Q Consensus 19 l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~f~v~- 97 (191)
+..+.|.|+| +++.+||+++||-.. ...+.+.+..+++ +............+-|.|+
T Consensus 6 ~e~i~LNV~d-~~~~~fy~~~f~~~~-----------------~~~l~f~ea~G~D----L~~~~~~twDLe~Lkf~V~~ 63 (101)
T PF14507_consen 6 FESIELNVPD-AKSQSFYQSIFGGQL-----------------PFFLTFQEAQGPD----LTIENNETWDLEMLKFQVPK 63 (101)
T ss_dssp E-EEEEEE-T--T---S--H---HHH-----------------TTTEEEEE---CC----GSS-TTSBSSEEEEEEEES-
T ss_pred EEEEEEeCCC-hhHHHHHHhccccCC-----------------CceEEEeeccCCc----cccCCCcEEeeEEEEEEecC
Confidence 4578999999 889999999886211 1123344444433 3334455667888999996
Q ss_pred --CHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEE
Q 029568 98 --DVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIEL 140 (191)
Q Consensus 98 --dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl 140 (191)
|+.++.+++.+.++- .+.. .+.+.+.||+|..+-+
T Consensus 64 ~~Dl~~L~~~le~~~~f-----idKk---~k~l~~~Dps~IElWF 100 (101)
T PF14507_consen 64 DFDLAALKSHLEEQEFF-----IDKK---EKFLVTSDPSQIELWF 100 (101)
T ss_dssp S--HHHHHHHTTTS-EE-------TT----SEEEEE-TTS-EEEE
T ss_pred cccHHHHHHHhcccceE-----ecCC---ceEEEEECCcceEEEe
Confidence 677888888884432 1222 2568899999977644
No 106
>PF15067 FAM124: FAM124 family
Probab=96.12 E-value=0.071 Score=41.07 Aligned_cols=102 Identities=21% Similarity=0.260 Sum_probs=61.6
Q ss_pred eeEEEEEeC--CHHHHHHHHHHhcCCEEeeecCCCccceeEE---eeCCcEEEEEecCCCCCCCCCCCCCCCCCCceEEE
Q 029568 19 LNHVSLLCR--SVWDSVRFYEDVLGFVLIKRPSSFNFNGAWL---YNYGIGIHLIENPSIDDFDTVTEPRPINPKDNHIS 93 (191)
Q Consensus 19 l~hv~i~v~--Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~---~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~ 93 (191)
+-.++|+|+ |.+.+.+||+-+|+-+...... +-+++ ...+..+.|.-...+ +.-.+......-+.
T Consensus 129 ilRftly~~~~N~~d~vr~Yelil~~~~~~~k~----~FC~F~lys~~~~~iQlsLK~lp------~~~~p~p~esavLq 198 (236)
T PF15067_consen 129 ILRFTLYCSFDNYEDMVRFYELILQREPTQQKE----DFCFFTLYSQPGLDIQLSLKQLP------PGMSPEPTESAVLQ 198 (236)
T ss_pred EEEEEEEecCCCHHHHHHHHHHHhccCcceeeC----CcEEEEEecCCCeEEEEEeccCC------CCCCcccccceEEE
Confidence 346788998 9999999999999988876654 23333 223344444333321 11123334456789
Q ss_pred EEeCCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEE
Q 029568 94 FQCTDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIEL 140 (191)
Q Consensus 94 f~v~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl 140 (191)
|.|.|+.++..-|=. .. .|+.... --..|||||.|-+
T Consensus 199 F~V~~igqLvpLLPn-pc----~PIS~~r-----WqT~D~DGNkILL 235 (236)
T PF15067_consen 199 FRVEDIGQLVPLLPN-PC----SPISETR-----WQTEDYDGNKILL 235 (236)
T ss_pred EEecchhhhcccCCC-Cc----ccccCCc-----ceeeCCCCCEecc
Confidence 999998887443311 11 1222222 3579999999854
No 107
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=94.01 E-value=0.11 Score=38.30 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=30.3
Q ss_pred ceEEEEEeCCHHHHHHHH-HhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeecC
Q 029568 89 DNHISFQCTDVALVKRRL-EDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCEN 145 (191)
Q Consensus 89 ~~hi~f~v~dvd~~~~~l-~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~~ 145 (191)
++||.+.|.|++++.+++ +..|+++....... ++|-....+.=++| .|||....+
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~-~~GT~N~li~f~~~-YlEli~i~~ 56 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHP-GWGTANALIPFGDG-YLELIAIDP 56 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-T-TT-EEEEEEE-SSS-EEEEEEES-
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCC-CCccEEEEEeeCCc-eEEEEEeCC
Confidence 479999999999999999 78899988765443 33333333333777 999998643
No 108
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=93.57 E-value=0.42 Score=34.71 Aligned_cols=51 Identities=14% Similarity=0.159 Sum_probs=35.5
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCcc-ceeEEeeC-CcEEEEE
Q 029568 17 LSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNF-NGAWLYNY-GIGIHLI 68 (191)
Q Consensus 17 ~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~-~~~~~~~~-~~~l~l~ 68 (191)
++++||+|.|+|+.+++.-+++ +|.+.......... ..+|+... +..+++.
T Consensus 114 rGfgHIci~V~di~sac~~lke-kGV~f~Kk~~dGk~K~iaF~~dpDgywiei~ 166 (170)
T KOG2944|consen 114 RGFGHICIEVDDINSACERLKE-KGVRFKKKLKDGKMKPIAFLHDPDGYWIEIE 166 (170)
T ss_pred CccceEEEEeCCHHHHHHHHHH-hCceeeecCCCccccceeEEECCCCCeEEEe
Confidence 6899999999999999999988 99997766543322 33444332 2344443
No 109
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=93.43 E-value=0.68 Score=32.41 Aligned_cols=57 Identities=18% Similarity=0.356 Sum_probs=39.7
Q ss_pred CceEEEEEeCCHHHHHHHHHhCCCeEEeeeeecC----------CceeEEEEEECCCC-CEEEEEeec
Q 029568 88 KDNHISFQCTDVALVKRRLEDMGMRYVTAVVEDD----------GTRVDQVFFHDPDG-YMIELCNCE 144 (191)
Q Consensus 88 g~~hi~f~v~dvd~~~~~l~~~G~~~~~~~~~~~----------g~g~~~~~~~DPdG-~~iEl~~~~ 144 (191)
+++||++.|.|++++.+...+.|..+........ +.+.+..++..|+| ..|||.+..
T Consensus 3 ~i~Hi~i~v~Dl~~s~~FY~~LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~ 70 (142)
T cd08353 3 RMDNVGIVVRDLEAAIAFFLELGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFH 70 (142)
T ss_pred eeeeEEEEeCCHHHHHHHHHHcCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEec
Confidence 5789999999999999998889987654321110 11234556666665 589999864
No 110
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=92.19 E-value=1.4 Score=29.70 Aligned_cols=58 Identities=21% Similarity=0.373 Sum_probs=39.3
Q ss_pred CceEEEEEeCCHHHHHHHHHh-CCCeEEeeeeecCCceeEEEEEECC---CCCEEEEEeecC
Q 029568 88 KDNHISFQCTDVALVKRRLED-MGMRYVTAVVEDDGTRVDQVFFHDP---DGYMIELCNCEN 145 (191)
Q Consensus 88 g~~hi~f~v~dvd~~~~~l~~-~G~~~~~~~~~~~g~g~~~~~~~DP---dG~~iEl~~~~~ 145 (191)
+++|+++.|.|++++.+-..+ .|.+.........+.+....++.+. .|..++|.....
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~ 62 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPD 62 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCC
Confidence 468999999999999999886 5998665432222112244555554 677888887543
No 111
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=92.03 E-value=2 Score=28.80 Aligned_cols=56 Identities=18% Similarity=0.312 Sum_probs=38.8
Q ss_pred CceEEEEEeCCHHHHHHHHHh-CCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeec
Q 029568 88 KDNHISFQCTDVALVKRRLED-MGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCE 144 (191)
Q Consensus 88 g~~hi~f~v~dvd~~~~~l~~-~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~ 144 (191)
+.+||++.|.|++++.+...+ .|+.+........ .....+.+..+++..+++....
T Consensus 3 ~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~-~~~~~~~~~~~~~~~i~l~~~~ 59 (125)
T cd08352 3 GIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPE-RGSYKLDLLLNGGYQLELFSFP 59 (125)
T ss_pred ccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCC-CCcEEEEEecCCCcEEEEEEcC
Confidence 579999999999999999985 6998765432211 1122344555677888887654
No 112
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=91.26 E-value=2.2 Score=30.98 Aligned_cols=59 Identities=19% Similarity=0.256 Sum_probs=41.1
Q ss_pred CCceEEEEEeCCHHHHHHHHHh-CCCeEEeeee---ec------------C-Cc-eeEEEEEECCCCCEEEEEeecC
Q 029568 87 PKDNHISFQCTDVALVKRRLED-MGMRYVTAVV---ED------------D-GT-RVDQVFFHDPDGYMIELCNCEN 145 (191)
Q Consensus 87 ~g~~hi~f~v~dvd~~~~~l~~-~G~~~~~~~~---~~------------~-g~-g~~~~~~~DPdG~~iEl~~~~~ 145 (191)
.+++|+++.|.|++++.+-..+ .|..+...+. .. + ++ ..+..++..++|..||+.+...
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~~ 79 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFKN 79 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEeccC
Confidence 3679999999999999998876 6987642210 00 0 11 2455667777888999998753
No 113
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=91.02 E-value=1.3 Score=28.37 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=35.4
Q ss_pred CHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeec
Q 029568 98 DVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCE 144 (191)
Q Consensus 98 dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~ 144 (191)
..+++.+++.+.|.++..-..++. |.+.+...|.+|+.+|+.-..
T Consensus 30 ~~~~~~~~l~~~G~~v~~ve~~~~--g~yev~~~~~dG~~~ev~vD~ 74 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREVEFDDD--GCYEVEARDKDGKKVEVYVDP 74 (83)
T ss_pred CHHHHHHHHHhcCCceEEEEEcCC--CEEEEEEEECCCCEEEEEEcC
Confidence 689999999999997665444333 348888999999999998543
No 114
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=88.52 E-value=2.7 Score=28.30 Aligned_cols=55 Identities=18% Similarity=0.136 Sum_probs=37.5
Q ss_pred ceEEEEEeCCHHHHHHHHHh-CCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeec
Q 029568 89 DNHISFQCTDVALVKRRLED-MGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCE 144 (191)
Q Consensus 89 ~~hi~f~v~dvd~~~~~l~~-~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~ 144 (191)
+.||++.|.|++++.+...+ .|...........+.+....++.. +|..++|.+..
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~~~~ 56 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGL-GNVQIELIEPL 56 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEc-CCEEEEEEEEC
Confidence 36999999999999999987 698865543221112234455554 68888998754
No 115
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=87.84 E-value=6.1 Score=26.40 Aligned_cols=55 Identities=16% Similarity=0.168 Sum_probs=36.5
Q ss_pred ceEEEEEeCCHHHHHHHHHh-CCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeec
Q 029568 89 DNHISFQCTDVALVKRRLED-MGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCE 144 (191)
Q Consensus 89 ~~hi~f~v~dvd~~~~~l~~-~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~ 144 (191)
.+|+++.|+|++++.+-..+ .|.++........ .+....|+.-.+|..+++.+..
T Consensus 2 ~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~ 57 (125)
T cd07241 2 IEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPR-KGFESYFLSFDDGARLELMTRP 57 (125)
T ss_pred ceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCC-CCceEEEEecCCCcEEEEEcCc
Confidence 57999999999999988877 4887543321111 2223445544567889998754
No 116
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=86.77 E-value=7.2 Score=25.94 Aligned_cols=56 Identities=23% Similarity=0.337 Sum_probs=38.3
Q ss_pred CceEEEEEeCCHHHHHHHHHhC-CCeEEeeee-ecCCceeEEEEEECCCCCEEEEEeec
Q 029568 88 KDNHISFQCTDVALVKRRLEDM-GMRYVTAVV-EDDGTRVDQVFFHDPDGYMIELCNCE 144 (191)
Q Consensus 88 g~~hi~f~v~dvd~~~~~l~~~-G~~~~~~~~-~~~g~g~~~~~~~DPdG~~iEl~~~~ 144 (191)
+++||++.|.|++++.+-..+. |.++..... ...+......++...+. .+++....
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~ 58 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEG-HIELFLNP 58 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSS-CEEEEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeeccccc-ceeeeeec
Confidence 4689999999999999888875 999877664 22222334455555554 56666653
No 117
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=85.54 E-value=5.3 Score=29.94 Aligned_cols=57 Identities=14% Similarity=0.141 Sum_probs=40.9
Q ss_pred CceEEEEEeC--CHHHHHHHHHh-CCCeEEeeeee-cCCceeEEEEEECCCC-CEEEEEeec
Q 029568 88 KDNHISFQCT--DVALVKRRLED-MGMRYVTAVVE-DDGTRVDQVFFHDPDG-YMIELCNCE 144 (191)
Q Consensus 88 g~~hi~f~v~--dvd~~~~~l~~-~G~~~~~~~~~-~~g~g~~~~~~~DPdG-~~iEl~~~~ 144 (191)
+++||++.|. |++++.+...+ .|......... ....+.++..+..|+| ..++|.+..
T Consensus 3 ~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~ 64 (191)
T cd07250 3 RIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPA 64 (191)
T ss_pred eeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCC
Confidence 5789999998 99999998865 69986654321 1123567778888875 567888653
No 118
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=85.19 E-value=8.9 Score=27.67 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=35.3
Q ss_pred CceEEEEEeCCHHHHHHHHHhC-CCeEEeeeeecCCceeEEEEEEC--CCCCEEEEEeec
Q 029568 88 KDNHISFQCTDVALVKRRLEDM-GMRYVTAVVEDDGTRVDQVFFHD--PDGYMIELCNCE 144 (191)
Q Consensus 88 g~~hi~f~v~dvd~~~~~l~~~-G~~~~~~~~~~~g~g~~~~~~~D--PdG~~iEl~~~~ 144 (191)
|++||++.|.|++++.+-..+. |.++.... .+ ...++.. .+|..+++.+..
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~---~~---~~~~~~~~~~~~~~l~l~~~~ 54 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEE---GD---RVRLEEGGGGPGAVVDVLEEP 54 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeee---CC---EEEEEecCCCCCCEEEEEeCC
Confidence 5789999999999999988764 98865432 11 1222232 358899998753
No 119
>PLN02367 lactoylglutathione lyase
Probab=84.92 E-value=5 Score=31.28 Aligned_cols=54 Identities=19% Similarity=0.383 Sum_probs=37.7
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCc-cceeEEee-CCcEEEEEecC
Q 029568 17 LSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFN-FNGAWLYN-YGIGIHLIENP 71 (191)
Q Consensus 17 ~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~-~~~~~~~~-~~~~l~l~~~~ 71 (191)
.+++|++|.|.|++++.+-.++ .|.+......... ...+|+.. +|..++|++..
T Consensus 168 ~G~~HIaf~VdDVdaa~erL~a-~Gv~~v~~P~~g~~~riaFIkDPDGn~IEL~e~~ 223 (233)
T PLN02367 168 RGFGHIGITVDDVYKACERFEE-LGVEFVKKPNDGKMKGIAFIKDPDGYWIEIFDLK 223 (233)
T ss_pred CCceEEEEEcCCHHHHHHHHHH-CCCEEEeCCccCCceEEEEEECCCCCEEEEEecc
Confidence 4799999999999999999977 9999886433211 12334433 45677777654
No 120
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.79 E-value=14 Score=26.60 Aligned_cols=99 Identities=12% Similarity=0.050 Sum_probs=53.0
Q ss_pred EEeCCHHHHHHHHHHhcCCEEee---ecCCCc-------cceeEEeeCCcEEEEEecCCCCCCCCCCCCCCCCCCceEEE
Q 029568 24 LLCRSVWDSVRFYEDVLGFVLIK---RPSSFN-------FNGAWLYNYGIGIHLIENPSIDDFDTVTEPRPINPKDNHIS 93 (191)
Q Consensus 24 i~v~Dl~~a~~FY~~~LG~~~~~---~~~~~~-------~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~hi~ 93 (191)
.+-.+-++|.+||.++|-=..+. +.+... ...+.+.-+|..+..+....... .....-..+.
T Consensus 11 ~F~~~AeeA~~fY~s~FpdS~i~~i~r~p~~~~~g~~G~Vl~a~F~l~g~~f~~ld~g~~~~--------f~fneA~S~~ 82 (151)
T COG3865 11 WFDGNAEEAMNFYLSTFPDSKIIGITRYPEGEPGGKEGKVLVAEFTLNGQSFMALDGGPNTS--------FKFNEAFSFQ 82 (151)
T ss_pred EECCcHHHHHHHHHHhCCcceeeeeeecCCCCCCCCCccEEEEEEEECCeEEEEEcCCCCcC--------CCcCccEEEE
Confidence 34489999999999998533222 211111 11122333444433332221100 0011112333
Q ss_pred EEe---CCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEE
Q 029568 94 FQC---TDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELC 141 (191)
Q Consensus 94 f~v---~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~ 141 (191)
+.+ +++|++.++|.+.|.+ .....|++|--|.-|+|+
T Consensus 83 v~~~~q~E~Drlwnal~~~g~e-----------~~~cgW~kDKfGVSWQi~ 122 (151)
T COG3865 83 VACDDQEEIDRLWNALSDNGGE-----------AEACGWLKDKFGVSWQIV 122 (151)
T ss_pred EEcCCHHHHHHHHHHHhccCcc-----------hhcceeEecccCcEEEEc
Confidence 334 3578888899888762 114468999999999998
No 121
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=83.14 E-value=6.4 Score=25.47 Aligned_cols=53 Identities=11% Similarity=0.127 Sum_probs=35.7
Q ss_pred ceEEEEEeCCHHHHHHHHH-hCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeecC
Q 029568 89 DNHISFQCTDVALVKRRLE-DMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCEN 145 (191)
Q Consensus 89 ~~hi~f~v~dvd~~~~~l~-~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~~ 145 (191)
++|+++.|+|++++.+-.. ..|......+.. . ....++..+++..++|.....
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~-~---~~~~~~~~~~~~~i~l~~~~~ 54 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPF-L---FPGAWLYAGDGPQLHLIEEDP 54 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCC-C---CCceEEEeCCCcEEEEEecCC
Confidence 4799999999999998886 558876543311 1 122455555566788887644
No 122
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=83.03 E-value=10 Score=25.13 Aligned_cols=54 Identities=20% Similarity=0.226 Sum_probs=36.8
Q ss_pred ceEEEEEeCCHHHHHHHHHhC-CCeEEeeeeecCCceeEEEEEECCC---CCEEEEEee
Q 029568 89 DNHISFQCTDVALVKRRLEDM-GMRYVTAVVEDDGTRVDQVFFHDPD---GYMIELCNC 143 (191)
Q Consensus 89 ~~hi~f~v~dvd~~~~~l~~~-G~~~~~~~~~~~g~g~~~~~~~DPd---G~~iEl~~~ 143 (191)
..|+++.|.|++++.+-..+. |+++........ .+...+++..++ +..+++...
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~l~~~ 58 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPE-GKFTLVFLGYPDEDSEGVLELTYN 58 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCC-CceEEEEecCCCCCCccEEEEEec
Confidence 369999999999999999875 998765432221 122335555554 578888764
No 123
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=82.45 E-value=5.8 Score=24.90 Aligned_cols=40 Identities=20% Similarity=0.260 Sum_probs=31.9
Q ss_pred HHHHHHHHHhCCCeEEeeeeecCCc-eeEEEEEECCCCCEE
Q 029568 99 VALVKRRLEDMGMRYVTAVVEDDGT-RVDQVFFHDPDGYMI 138 (191)
Q Consensus 99 vd~~~~~l~~~G~~~~~~~~~~~g~-g~~~~~~~DPdG~~i 138 (191)
+-++.+.+...|+.+....+...|. -...||+.|.+|+.+
T Consensus 15 L~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl 55 (72)
T cd04895 15 LLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKL 55 (72)
T ss_pred HHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCC
Confidence 4567788899999998887766543 568899999999876
No 124
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=82.25 E-value=9.2 Score=24.31 Aligned_cols=52 Identities=13% Similarity=0.200 Sum_probs=38.1
Q ss_pred EEEEEeCCHHHHHHHHHh-CCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeecCC
Q 029568 91 HISFQCTDVALVKRRLED-MGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCENI 146 (191)
Q Consensus 91 hi~f~v~dvd~~~~~l~~-~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~~~ 146 (191)
|+.+.|.|++++.+-..+ .|.+....... . .....++.++ +..++|......
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~-~--~~~~~~~~~~-~~~i~l~~~~~~ 53 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN-G--GAEFAVLGLG-GTRLELFEGDEP 53 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc-C--CEEEEEEecC-CceEEEecCCCC
Confidence 788999999999999997 79987665421 1 1245566655 789999987543
No 125
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=80.79 E-value=9.7 Score=25.70 Aligned_cols=52 Identities=15% Similarity=0.233 Sum_probs=36.2
Q ss_pred CceEEEEEeCCHHHHHHHHHhC----CCeEEeeeeecCCceeEEEEEECCCCCEEEEEeecC
Q 029568 88 KDNHISFQCTDVALVKRRLEDM----GMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCEN 145 (191)
Q Consensus 88 g~~hi~f~v~dvd~~~~~l~~~----G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~~ 145 (191)
+.+|+.+.|.|++++.+-..+. |.++.... . . ...|+...++..+++.....
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~-~-~----~~~~~~~~~~~~i~l~~~~~ 56 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEW-E-D----GRSWRAGDGGTYLVLQQADG 56 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEee-c-c----CceEEecCCceEEEEEeccc
Confidence 4689999999999999888776 88865543 1 1 12343335677888886543
No 126
>PRK11478 putative lyase; Provisional
Probab=80.03 E-value=13 Score=25.15 Aligned_cols=56 Identities=23% Similarity=0.234 Sum_probs=34.9
Q ss_pred CceEEEEEeCCHHHHHHHHHh-CCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeec
Q 029568 88 KDNHISFQCTDVALVKRRLED-MGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCE 144 (191)
Q Consensus 88 g~~hi~f~v~dvd~~~~~l~~-~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~ 144 (191)
+.+|+++.|.|++++.+-..+ .|..+........ .+.....+.-.++..+|+.+..
T Consensus 6 ~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~-~~~~~~~~~~~~~~~l~l~~~~ 62 (129)
T PRK11478 6 QVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREA-RDSWKGDLALNGQYVIELFSFP 62 (129)
T ss_pred eecEEEEEcCCHHHHHHHHHHHhCCEecccccccc-cccceeeEecCCCcEEEEEEec
Confidence 578999999999999988865 6988654321111 1111112222346788988753
No 127
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=79.71 E-value=8.5 Score=26.60 Aligned_cols=30 Identities=7% Similarity=0.010 Sum_probs=25.0
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHh--cCCEEee
Q 029568 17 LSLNHVSLLCRSVWDSVRFYEDV--LGFVLIK 46 (191)
Q Consensus 17 ~~l~hv~i~v~Dl~~a~~FY~~~--LG~~~~~ 46 (191)
.+++|+++.|.|+++..+++.++ .|.++..
T Consensus 61 ~g~~hiaf~v~d~~~~~~~~~~l~~~G~~~~~ 92 (134)
T cd08360 61 AGFHHAAFEVGDIDEVMLGGNHMLRAGYQTGW 92 (134)
T ss_pred CcceEEEEEeCCHHHHHHHHHHHHHcCCcccc
Confidence 57899999999999999888776 5776653
No 128
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=77.95 E-value=13 Score=27.89 Aligned_cols=55 Identities=18% Similarity=0.323 Sum_probs=36.9
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCC-ccceeEEe-eCCcEEEEEecCC
Q 029568 17 LSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSF-NFNGAWLY-NYGIGIHLIENPS 72 (191)
Q Consensus 17 ~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~-~~~~~~~~-~~~~~l~l~~~~~ 72 (191)
.+++|++|.|.|++++.+.+++ .|.++....... .....|+. ..|..++|++..+
T Consensus 120 ~G~~Hlaf~V~Dvd~~~~~L~~-~Gv~v~~~p~~~~~~~~~fi~DPdG~~IEl~e~~~ 176 (185)
T PLN03042 120 RGFGHIGITVDDVYKACERFEK-LGVEFVKKPDDGKMKGLAFIKDPDGYWIEIFDLKR 176 (185)
T ss_pred CCccEEEEEcCCHHHHHHHHHH-CCCeEEeCCccCCceeEEEEECCCCCEEEEEECCC
Confidence 4789999999999999999977 898877543211 11223332 3456777777554
No 129
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=76.81 E-value=24 Score=25.12 Aligned_cols=58 Identities=16% Similarity=0.217 Sum_probs=36.5
Q ss_pred CCCceEEEEEeCCHHHHHHHHHh-CCCeEEeeeeecC--CceeEEEEEE-CCCCCEEEEEee
Q 029568 86 NPKDNHISFQCTDVALVKRRLED-MGMRYVTAVVEDD--GTRVDQVFFH-DPDGYMIELCNC 143 (191)
Q Consensus 86 ~~g~~hi~f~v~dvd~~~~~l~~-~G~~~~~~~~~~~--g~g~~~~~~~-DPdG~~iEl~~~ 143 (191)
..+++||++.|+|++++.+-..+ .|+.+........ +.+....++. ++.++.+.+...
T Consensus 7 ~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~ 68 (154)
T cd07237 7 DQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAEG 68 (154)
T ss_pred CCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEcC
Confidence 45789999999999999988876 6988654321110 1122334433 455677776543
No 130
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=76.54 E-value=18 Score=23.63 Aligned_cols=51 Identities=14% Similarity=0.067 Sum_probs=34.1
Q ss_pred EEEEEeCCHHHHHHHHHh-CCCeEEeeeeecCCceeEEEEEECCCC--CEEEEEee
Q 029568 91 HISFQCTDVALVKRRLED-MGMRYVTAVVEDDGTRVDQVFFHDPDG--YMIELCNC 143 (191)
Q Consensus 91 hi~f~v~dvd~~~~~l~~-~G~~~~~~~~~~~g~g~~~~~~~DPdG--~~iEl~~~ 143 (191)
|+++.|.|++++.+-..+ .|.++....... .+...+.+.++++ ..+++...
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~ 54 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMG--GGFRWVTVAPPGSPETSLVLAPP 54 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccC--CCcEEEEEeCCCCCeeEEEEeCC
Confidence 789999999999998887 799876543211 1234455666654 45665543
No 131
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=76.12 E-value=15 Score=25.45 Aligned_cols=51 Identities=10% Similarity=0.126 Sum_probs=33.6
Q ss_pred ceEEEEEeCCHHHHHHHHHh-CCCeEEeeeeecCCceeEEEEEECCCCCEEEEEee
Q 029568 89 DNHISFQCTDVALVKRRLED-MGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNC 143 (191)
Q Consensus 89 ~~hi~f~v~dvd~~~~~l~~-~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~ 143 (191)
++|+.+.|.|++++.+..++ .|+++..... .. +....++. ..+..+++.+.
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~-~~--~~~~~~~~-~g~~~l~l~~~ 52 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHG-SE--DKASYLLR-QGDINFVLNSP 52 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecC-CC--ceEEEEEE-cCCEEEEEecC
Confidence 37999999999999999998 7998765431 11 22334444 34455666543
No 132
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=73.02 E-value=25 Score=23.45 Aligned_cols=51 Identities=10% Similarity=0.186 Sum_probs=35.4
Q ss_pred CceEEEEEeCCHHHHHHHHHh-CCCeEEeeeeecCCceeEEEEEECCC-CCEEEEEeecC
Q 029568 88 KDNHISFQCTDVALVKRRLED-MGMRYVTAVVEDDGTRVDQVFFHDPD-GYMIELCNCEN 145 (191)
Q Consensus 88 g~~hi~f~v~dvd~~~~~l~~-~G~~~~~~~~~~~g~g~~~~~~~DPd-G~~iEl~~~~~ 145 (191)
.++||.+.|.|++++.+-..+ .|.++.... . ..+++...+ +..+.|.....
T Consensus 2 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~---~----~~~~l~~~~~~~~l~l~~~~~ 54 (125)
T cd07255 2 RIGAVTLRVADLERSLAFYQDVLGLEVLERT---D----STAVLGTGGKRPLLVLEEDPD 54 (125)
T ss_pred EEEEEEEEECCHHHHHHHHHhccCcEEEEcC---C----CEEEEecCCCeEEEEEEeCCC
Confidence 468999999999999998886 598876542 1 124455544 56777776543
No 133
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=72.34 E-value=17 Score=23.02 Aligned_cols=40 Identities=23% Similarity=0.342 Sum_probs=31.4
Q ss_pred HHHHHHHHHhCCCeEEeeeeecCCc-eeEEEEEECCCCCEE
Q 029568 99 VALVKRRLEDMGMRYVTAVVEDDGT-RVDQVFFHDPDGYMI 138 (191)
Q Consensus 99 vd~~~~~l~~~G~~~~~~~~~~~g~-g~~~~~~~DPdG~~i 138 (191)
+-.+...+.+.|+.+....+...|. -...||++|.+|..+
T Consensus 15 L~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl 55 (75)
T cd04897 15 LFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTL 55 (75)
T ss_pred HHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCcc
Confidence 4456678889999998887766553 568899999999865
No 134
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=72.19 E-value=21 Score=23.85 Aligned_cols=53 Identities=17% Similarity=0.171 Sum_probs=34.3
Q ss_pred ceEEEEEeCCHHHHHHHHHh-CCCeEEeeeeecCCceeEEEEEECCCCCEEEEEee
Q 029568 89 DNHISFQCTDVALVKRRLED-MGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNC 143 (191)
Q Consensus 89 ~~hi~f~v~dvd~~~~~l~~-~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~ 143 (191)
+.|+++.|.|++++.+..+. .|++...... ..+.+... ++..+.+..++|.+.
T Consensus 2 i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~-~~~~~~~~-~~~~~~~~~i~l~~~ 55 (128)
T TIGR03081 2 IDHVGIAVPDLEEAAKLYEDVLGAHVSHIEE-VPEQGVKV-VFIALGNTKVELLEP 55 (128)
T ss_pred CCEEEEEeCCHHHHHHHHHHHhCCCCcccee-CCCCCcEE-EEEecCCEEEEEEec
Confidence 57999999999999999875 5988654321 11122233 333344677888764
No 135
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=71.16 E-value=24 Score=25.13 Aligned_cols=28 Identities=14% Similarity=0.245 Sum_probs=22.9
Q ss_pred ceEEEEEeCCHHHHHHHHHh-CCCeEEee
Q 029568 89 DNHISFQCTDVALVKRRLED-MGMRYVTA 116 (191)
Q Consensus 89 ~~hi~f~v~dvd~~~~~l~~-~G~~~~~~ 116 (191)
++||++.|.|++++.+-..+ .|.++...
T Consensus 2 i~Hv~l~V~Dle~a~~FY~~~LG~~~~~~ 30 (153)
T cd07257 2 LGHVVLEVPDFAASFDWYTETFGLKPSDV 30 (153)
T ss_pred ccEEEEecCCHHHHHHHHHHhcCCeEEee
Confidence 57999999999999888754 69886543
No 136
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=70.67 E-value=43 Score=25.19 Aligned_cols=73 Identities=19% Similarity=0.143 Sum_probs=41.3
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeE-------EeeCCcEEEEEecCCCCCCCCCCCCC-CCCCC
Q 029568 17 LSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAW-------LYNYGIGIHLIENPSIDDFDTVTEPR-PINPK 88 (191)
Q Consensus 17 ~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~-------~~~~~~~l~l~~~~~~~~~~~~~~~~-~~~~g 88 (191)
-.++|++++|++.+.+.+|-+..+..-..-.......+-.+ +..++..+..++.+.+ ..+ -+.-|
T Consensus 33 ~~~DHialRvn~~~~A~~~~~~l~~~G~llSen~INGRPI~l~~L~qPL~~~~~~I~~vELP~P-------~~K~Yp~eG 105 (185)
T PF06185_consen 33 YEIDHIALRVNSNETAERWKQALLQCGELLSENMINGRPICLFKLNQPLQFGGWSIDCVELPYP-------KDKRYPQEG 105 (185)
T ss_dssp -EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEE----------SS--SS-E
T ss_pred cCCcEEEEecCCHHHHHHHHHHHHHhChhhhhceeCCeeEEEEEcCCchhcCCeeEEEEEeCCC-------CCCCCCCCC
Confidence 46899999999999999999998865433322111112111 2356667777776643 222 23446
Q ss_pred ceEEEEEe
Q 029568 89 DNHISFQC 96 (191)
Q Consensus 89 ~~hi~f~v 96 (191)
.-||-|.+
T Consensus 106 WEHIE~Vi 113 (185)
T PF06185_consen 106 WEHIEFVI 113 (185)
T ss_dssp EEEEEEE-
T ss_pred ceEEEEEe
Confidence 77999888
No 137
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=69.71 E-value=11 Score=22.15 Aligned_cols=26 Identities=15% Similarity=0.303 Sum_probs=22.7
Q ss_pred CceEEEEEeCCHHHHHHHHHhCCCeE
Q 029568 88 KDNHISFQCTDVALVKRRLEDMGMRY 113 (191)
Q Consensus 88 g~~hi~f~v~dvd~~~~~l~~~G~~~ 113 (191)
+...+.|.+++.+.+.+.|+++|+++
T Consensus 39 ~~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCceE
Confidence 45778889999999999999999875
No 138
>PRK10291 glyoxalase I; Provisional
Probab=67.97 E-value=32 Score=23.32 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=34.4
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCC--c-cceeEEe-eCCcEEEEEecC
Q 029568 17 LSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSF--N-FNGAWLY-NYGIGIHLIENP 71 (191)
Q Consensus 17 ~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~--~-~~~~~~~-~~~~~l~l~~~~ 71 (191)
.+++|++|.|.|++++.+-.++ .|.++....... . ...+|+. ..|..++|.+..
T Consensus 64 ~~~~hlaf~V~d~~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~ 121 (129)
T PRK10291 64 TAYGHIALSVDNAAEACEKIRQ-NGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEK 121 (129)
T ss_pred CCeeEEEEEeCCHHHHHHHHHH-cCCccccCCcccCCCceEEEEEECCCCCEEEEEEcc
Confidence 3688999999999999888866 788776432111 1 1123333 345677777644
No 139
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=67.18 E-value=38 Score=23.21 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=24.3
Q ss_pred CCceEEEEEeCCHHHHHHHHHh-CCCeEEee
Q 029568 87 PKDNHISFQCTDVALVKRRLED-MGMRYVTA 116 (191)
Q Consensus 87 ~g~~hi~f~v~dvd~~~~~l~~-~G~~~~~~ 116 (191)
.+.+|+++.|+|++++.+-..+ .|......
T Consensus 3 ~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~ 33 (131)
T cd08364 3 EGLSHITLIVKDLNKTTAFLQNIFNAREVYS 33 (131)
T ss_pred ccEeEEEEEeCCHHHHHHHHHHHhCCeeEEe
Confidence 3689999999999999988876 58875443
No 140
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=65.60 E-value=28 Score=23.17 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=31.6
Q ss_pred ceEEEEEeCCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEe
Q 029568 89 DNHISFQCTDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCN 142 (191)
Q Consensus 89 ~~hi~f~v~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~ 142 (191)
.+||++.|+|++++.+-....|.++.... ... ..+.+..++|..+.+..
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~LGf~~~~~~---~~~--~~~~~~~~~~~~l~l~~ 49 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRRLGFDFPEEA---DDE--PHVEAVLPGGVRLAWDT 49 (122)
T ss_pred CceEEEEeccHHHHHHHHHHhCceecCCc---CCC--CcEEEEeCCCEEEEEEc
Confidence 36999999999999988887898754321 111 12344555566665543
No 141
>PRK11700 hypothetical protein; Provisional
Probab=65.60 E-value=56 Score=24.60 Aligned_cols=74 Identities=19% Similarity=0.140 Sum_probs=43.8
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeEE-------eeCCcEEEEEecCCCCCCCCCCCCCCCCCCc
Q 029568 17 LSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAWL-------YNYGIGIHLIENPSIDDFDTVTEPRPINPKD 89 (191)
Q Consensus 17 ~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~-------~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~ 89 (191)
-.++|++++|.+.+.|.+|-+..+..-..-.......+-.++ ..++..+..++.+.+.. ..-..-|.
T Consensus 38 ~~~DHialR~n~~~tAe~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~w~I~cvELP~P~~------k~Yp~eGW 111 (187)
T PRK11700 38 LEADHIALRCNQNETAERWRQGFLQCGELLSENIINGRPICLFELDQPLQVGHWSIDCVELPYPGE------KRYPHEGW 111 (187)
T ss_pred ccCcEEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCCC------CCCCCCCc
Confidence 457899999999999999998877442222111111122221 24556677777664321 11224467
Q ss_pred eEEEEEe
Q 029568 90 NHISFQC 96 (191)
Q Consensus 90 ~hi~f~v 96 (191)
-||-+.+
T Consensus 112 EHIElVl 118 (187)
T PRK11700 112 EHIELVL 118 (187)
T ss_pred eEEEEEe
Confidence 7998887
No 142
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=64.88 E-value=13 Score=24.56 Aligned_cols=28 Identities=18% Similarity=0.404 Sum_probs=23.9
Q ss_pred CceEEEEEeCCHHHHHHHHHhCCCeEEe
Q 029568 88 KDNHISFQCTDVALVKRRLEDMGMRYVT 115 (191)
Q Consensus 88 g~~hi~f~v~dvd~~~~~l~~~G~~~~~ 115 (191)
++.|+++.|.|++++.+-....|..+..
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~~lG~~~~~ 29 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYEAFGLDVRE 29 (112)
T ss_pred ceeEEEEecCCHHHHHHHHHHhCCcEEe
Confidence 5789999999999999888878988653
No 143
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=64.55 E-value=51 Score=23.80 Aligned_cols=30 Identities=20% Similarity=0.429 Sum_probs=24.9
Q ss_pred CCceEEEEEeCCHHHHHHHHHh-CCCeEEee
Q 029568 87 PKDNHISFQCTDVALVKRRLED-MGMRYVTA 116 (191)
Q Consensus 87 ~g~~hi~f~v~dvd~~~~~l~~-~G~~~~~~ 116 (191)
.+++||++.|.|++++.+-..+ .|.+....
T Consensus 5 ~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~ 35 (166)
T cd09014 5 RRLDHVNLLASDVDANRDFMEEVLGFRLREQ 35 (166)
T ss_pred ceeeeEEEEcCCHHHHHHHHHHccCCEEEEE
Confidence 4678999999999999999975 69886544
No 144
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=62.20 E-value=51 Score=22.98 Aligned_cols=56 Identities=13% Similarity=0.167 Sum_probs=35.7
Q ss_pred CceEEEEEeCCHHHHHHHHH-hCCCeEEeeeeecC---------CceeEE-EEEE---CCCCCEEEEEee
Q 029568 88 KDNHISFQCTDVALVKRRLE-DMGMRYVTAVVEDD---------GTRVDQ-VFFH---DPDGYMIELCNC 143 (191)
Q Consensus 88 g~~hi~f~v~dvd~~~~~l~-~~G~~~~~~~~~~~---------g~g~~~-~~~~---DPdG~~iEl~~~ 143 (191)
+..|+++.|.|+++..+=-. ..|.++........ ..+... .++. +..+..+|+...
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n 71 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYN 71 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEec
Confidence 46899999999999998885 57998765431111 012222 2332 345678899864
No 145
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=61.65 E-value=48 Score=22.46 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=34.7
Q ss_pred ceEEEEEeCCHHHHHHHHHh-CCCeEEeeeeecCCceeEEEEEECC--CCCEEEEEeec
Q 029568 89 DNHISFQCTDVALVKRRLED-MGMRYVTAVVEDDGTRVDQVFFHDP--DGYMIELCNCE 144 (191)
Q Consensus 89 ~~hi~f~v~dvd~~~~~l~~-~G~~~~~~~~~~~g~g~~~~~~~DP--dG~~iEl~~~~ 144 (191)
.+|+.+.|.|++++.+-..+ .|..+.... .+ ....++..+ .+..+.+....
T Consensus 2 i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~---~~--~~~~~~~~~~~~~~~l~l~~~~ 55 (134)
T cd08348 2 LSHVVLYVRDLEAMVRFYRDVLGFTVTDRG---PL--GGLVFLSRDPDEHHQIALITGR 55 (134)
T ss_pred eeEEEEEecCHHHHHHHHHHhcCCEEEeec---cC--CcEEEEEecCCCceEEEEEecC
Confidence 68999999999999999987 699865432 11 123454443 35677877653
No 146
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=60.53 E-value=60 Score=23.24 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=23.7
Q ss_pred CceEEEEEeCCHHHHHHHHHh-CCCeEEe
Q 029568 88 KDNHISFQCTDVALVKRRLED-MGMRYVT 115 (191)
Q Consensus 88 g~~hi~f~v~dvd~~~~~l~~-~G~~~~~ 115 (191)
+++|+++.|.|+++..+-..+ .|.++..
T Consensus 3 ~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~ 31 (161)
T cd07256 3 RLDHFNLRVPDVDAGLAYYRDELGFRVSE 31 (161)
T ss_pred eEEEEEEecCCHHHHHHHHHhccCCEEEE
Confidence 578999999999999988877 6987653
No 147
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=60.07 E-value=63 Score=23.36 Aligned_cols=72 Identities=18% Similarity=0.152 Sum_probs=42.9
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEeeecCCCccceeE-------EeeCCcEEEEEecCCCCCCCCCCCCCCCCCCceE
Q 029568 19 LNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSSFNFNGAW-------LYNYGIGIHLIENPSIDDFDTVTEPRPINPKDNH 91 (191)
Q Consensus 19 l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~-------~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g~~h 91 (191)
++|++++|.+.+.+.+|-+..+..-..-.......+-.. +..++..+..++.+.+. ...-..-|.-|
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~llSen~INGRPI~l~~L~qPl~~~~~~I~cvELP~P~------~k~Yp~eGWEH 75 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELLSENEINGRPIALIKLEKPLQFAGWSISIVELPFPK------DKKYPQEGWEH 75 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeEEEEEcCCCceeCCcEEEEEEeCCCC------CCCCCCCCceE
Confidence 589999999999999999887754322211111112121 12455567777766432 11123456789
Q ss_pred EEEEe
Q 029568 92 ISFQC 96 (191)
Q Consensus 92 i~f~v 96 (191)
|-+.+
T Consensus 76 IE~Vl 80 (149)
T cd07268 76 IEIVI 80 (149)
T ss_pred EEEEe
Confidence 98887
No 148
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=57.74 E-value=29 Score=20.86 Aligned_cols=29 Identities=10% Similarity=0.201 Sum_probs=22.0
Q ss_pred CceEEEEEe--CCHHHHHHHHHhCCCeEEee
Q 029568 88 KDNHISFQC--TDVALVKRRLEDMGMRYVTA 116 (191)
Q Consensus 88 g~~hi~f~v--~dvd~~~~~l~~~G~~~~~~ 116 (191)
+...+.|.+ .+.+.+.+.|+++|+++.++
T Consensus 41 ~~~~v~i~v~~~~~~~~~~~L~~~G~~v~~~ 71 (72)
T cd04883 41 DNKILVFRVQTMNPRPIIEDLRRAGYEVLWP 71 (72)
T ss_pred CeEEEEEEEecCCHHHHHHHHHHCCCeeeCC
Confidence 345566665 58889999999999987653
No 149
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=57.49 E-value=41 Score=21.61 Aligned_cols=31 Identities=13% Similarity=0.033 Sum_probs=26.2
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeee
Q 029568 16 LLSLNHVSLLCRSVWDSVRFYEDVLGFVLIKR 47 (191)
Q Consensus 16 i~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~ 47 (191)
..+..|+.|.|.|++++.+...+ +|.+....
T Consensus 54 ~~~~~~~~~~v~dv~~~~~~l~~-~G~~~~~~ 84 (108)
T PF12681_consen 54 PGGGFHLCFEVEDVDALYERLKE-LGAEIVTE 84 (108)
T ss_dssp SSSEEEEEEEESHHHHHHHHHHH-TTSEEEEE
T ss_pred CCceeEEEEEEcCHHHHHHHHHH-CCCeEeeC
Confidence 45677999999999999999977 89887654
No 150
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=55.88 E-value=20 Score=29.42 Aligned_cols=89 Identities=17% Similarity=0.093 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHhCCCeEEeeee----ec--CCceeEEEEEECCCCCEEEEEeecCCCCccccc-CCccccchhh--hhhh
Q 029568 97 TDVALVKRRLEDMGMRYVTAVV----ED--DGTRVDQVFFHDPDGYMIELCNCENIPIIPLYS-CSFKPRMGSF--KRAA 167 (191)
Q Consensus 97 ~dvd~~~~~l~~~G~~~~~~~~----~~--~g~g~~~~~~~DPdG~~iEl~~~~~~~~~~~~~-~~~~~r~~~~--~~~~ 167 (191)
+++.+-.++|.+.|+.-..+.. +. -|.....-||..|=-+++||..-++..-.-... .+++.+.+.- -.+.
T Consensus 173 eef~ek~e~l~~~gvi~~edlkna~IeEYv~G~~f~~~yFyS~i~~~lEl~g~D~R~Esn~Dg~~RlPa~~ql~l~~~pt 252 (361)
T COG1759 173 EEFYEKAERLLKRGVITEEDLKNARIEEYVVGAPFYFHYFYSPIKDRLELLGIDRRYESNLDGLVRLPAKDQLELNLEPT 252 (361)
T ss_pred HHHHHHHHHHHHcCCcchhhhhhceeeEEeeccceeeeeeeccccCceeEeeeeheeeccchhhccCCHHHHhhcCCCce
Confidence 6777788888888876322221 11 133456678899988889998754322111111 2333332211 1233
Q ss_pred hhcchhHHHHHhhhhccc
Q 029568 168 ASTCGFLETVMMESLSTD 185 (191)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~ 185 (191)
--.||+.+.+|-|||-.+
T Consensus 253 yvv~Gn~p~vlRESLL~~ 270 (361)
T COG1759 253 YVVVGNIPVVLRESLLPK 270 (361)
T ss_pred EEEECCcchhhHHHHHHH
Confidence 367999999999998543
No 151
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=53.97 E-value=74 Score=22.26 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=24.5
Q ss_pred CCceEEEEEeCCHHHHHHHHHh-CCCeEEee
Q 029568 87 PKDNHISFQCTDVALVKRRLED-MGMRYVTA 116 (191)
Q Consensus 87 ~g~~hi~f~v~dvd~~~~~l~~-~G~~~~~~ 116 (191)
.+.+|+++.|.|+++..+-.++ .|..+...
T Consensus 5 ~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~ 35 (143)
T cd07243 5 HRLDHCLLTGEDIAETTRFFTDVLDFYLAER 35 (143)
T ss_pred ceeCEEEEecCCHHHHHHHHHHhcCCEEEEE
Confidence 3678999999999999988866 69886544
No 152
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=53.96 E-value=60 Score=22.75 Aligned_cols=54 Identities=19% Similarity=0.248 Sum_probs=34.2
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCC---CccceeEEe-eCCcEEEEEecC
Q 029568 17 LSLNHVSLLCRSVWDSVRFYEDVLGFVLIKRPSS---FNFNGAWLY-NYGIGIHLIENP 71 (191)
Q Consensus 17 ~~l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~~---~~~~~~~~~-~~~~~l~l~~~~ 71 (191)
.++.|++|.|.|++++.+...+ .|.+....... ......|+. ..|..++++...
T Consensus 85 ~g~~hi~f~v~dld~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~ 142 (150)
T TIGR00068 85 NGFGHIAIGVDDVYKACERVRA-LGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRK 142 (150)
T ss_pred CceeEEEEecCCHHHHHHHHHH-cCCccccCCcccCCCceEEEEEECCCCCEEEEEECC
Confidence 3578999999999999999977 88876643211 111123332 344566666543
No 153
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=53.53 E-value=25 Score=23.26 Aligned_cols=28 Identities=25% Similarity=0.469 Sum_probs=23.7
Q ss_pred CceEEEEEeCCHHHHHHHHHhCCCeEEe
Q 029568 88 KDNHISFQCTDVALVKRRLEDMGMRYVT 115 (191)
Q Consensus 88 g~~hi~f~v~dvd~~~~~l~~~G~~~~~ 115 (191)
+..|+.+.|+|++++.+-..+.|.+...
T Consensus 3 ~l~hv~l~v~Dl~~s~~FY~~lGl~~~~ 30 (113)
T cd07267 3 DIAHVRFEHPDLDKAERFLTDFGLEVAA 30 (113)
T ss_pred EEEEEEEccCCHHHHHHHHHHcCCEEEE
Confidence 4689999999999999888888987543
No 154
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=52.44 E-value=27 Score=23.30 Aligned_cols=30 Identities=13% Similarity=0.341 Sum_probs=24.8
Q ss_pred CCceEEEEEeCCHHHHHHHHHh-CCCeEEee
Q 029568 87 PKDNHISFQCTDVALVKRRLED-MGMRYVTA 116 (191)
Q Consensus 87 ~g~~hi~f~v~dvd~~~~~l~~-~G~~~~~~ 116 (191)
.+.+|+.+.|.|++++.+-..+ .|.++...
T Consensus 3 ~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~ 33 (122)
T cd07265 3 LRPGHVQLRVLDLEEAIKHYREVLGLDEVGR 33 (122)
T ss_pred ceEeEEEEEeCCHHHHHHHHHhccCCEeeee
Confidence 3678999999999999999876 69986543
No 155
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=52.25 E-value=72 Score=21.63 Aligned_cols=52 Identities=21% Similarity=0.286 Sum_probs=32.2
Q ss_pred eEEEEEeCCHHHHHHHHHh-CCCeEEeeeeecCCceeEEEEEECC-CCCEEEEEee
Q 029568 90 NHISFQCTDVALVKRRLED-MGMRYVTAVVEDDGTRVDQVFFHDP-DGYMIELCNC 143 (191)
Q Consensus 90 ~hi~f~v~dvd~~~~~l~~-~G~~~~~~~~~~~g~g~~~~~~~DP-dG~~iEl~~~ 143 (191)
+||++.|.|++++.+-..+ .|.++...... ++ .....|+... .+..+++...
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~-~~-~~~~~~~~~~~~~~~l~~~~~ 54 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGD-PG-VDAAAFLRCDEDHHDLALFPG 54 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEcc-CC-ceeEEEEEcCCCcceEEEEcC
Confidence 5999999999999998876 69986543211 11 1133444443 3445666643
No 156
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=51.79 E-value=73 Score=22.34 Aligned_cols=31 Identities=10% Similarity=0.114 Sum_probs=22.5
Q ss_pred cceeeEEEEEeCCHHHHHHHHHHh--cCCEEee
Q 029568 16 LLSLNHVSLLCRSVWDSVRFYEDV--LGFVLIK 46 (191)
Q Consensus 16 i~~l~hv~i~v~Dl~~a~~FY~~~--LG~~~~~ 46 (191)
-.+++|+++.|.|.+...++++.+ .|.+...
T Consensus 54 ~~gl~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~ 86 (141)
T cd07258 54 SSHFHHVNFMVTDIDDIGKALYRIKAHDVKVVF 86 (141)
T ss_pred CCceEEEEEECCCHHHHHHHHHHHHHCCCcEEe
Confidence 457999999999887666666554 5776544
No 157
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=50.84 E-value=72 Score=21.22 Aligned_cols=29 Identities=14% Similarity=0.227 Sum_probs=23.9
Q ss_pred CceEEEEEeCCHHHHHHHHHh-CCCeEEee
Q 029568 88 KDNHISFQCTDVALVKRRLED-MGMRYVTA 116 (191)
Q Consensus 88 g~~hi~f~v~dvd~~~~~l~~-~G~~~~~~ 116 (191)
+..|+++.|.|++++.+-..+ .|.++...
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~ 31 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDR 31 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccC
Confidence 568999999999999998876 59976543
No 158
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=48.67 E-value=33 Score=22.53 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=24.9
Q ss_pred CceEEEEEeCCHHHHHHHHHh-CCCeEEee
Q 029568 88 KDNHISFQCTDVALVKRRLED-MGMRYVTA 116 (191)
Q Consensus 88 g~~hi~f~v~dvd~~~~~l~~-~G~~~~~~ 116 (191)
+++|+.+.|+|+++..+-.++ .|......
T Consensus 3 ~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~ 32 (125)
T cd07253 3 RIDHVVLTVADIEATLDFYTRVLGMEVVRF 32 (125)
T ss_pred ccceEEEEecCHHHHHHHHHHHhCceeecc
Confidence 578999999999999999987 69886654
No 159
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=46.74 E-value=81 Score=20.64 Aligned_cols=26 Identities=8% Similarity=0.027 Sum_probs=21.9
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEeee
Q 029568 21 HVSLLCRSVWDSVRFYEDVLGFVLIKR 47 (191)
Q Consensus 21 hv~i~v~Dl~~a~~FY~~~LG~~~~~~ 47 (191)
|+.+.|.|+++..+...+ .|.+....
T Consensus 69 ~~~~~v~did~~~~~l~~-~G~~~~~~ 94 (119)
T cd08359 69 ILNFEVDDVDAEYERLKA-EGLPIVLP 94 (119)
T ss_pred EEEEEECCHHHHHHHHHh-cCCCeeec
Confidence 899999999999999987 78766543
No 160
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=46.47 E-value=23 Score=24.60 Aligned_cols=84 Identities=15% Similarity=0.213 Sum_probs=47.9
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEeeecC-----CCcccee-----EEeeCCcEEEEEecCCCCCCCCCCCCCCCCCC
Q 029568 19 LNHVSLLCRSVWDSVRFYEDVLGFVLIKRPS-----SFNFNGA-----WLYNYGIGIHLIENPSIDDFDTVTEPRPINPK 88 (191)
Q Consensus 19 l~hv~i~v~Dl~~a~~FY~~~LG~~~~~~~~-----~~~~~~~-----~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~g 88 (191)
++-+.+.|++.+++..-.++ -||.+..... .+..++. .+...+.++..+..- . ....
T Consensus 42 FGIiRmvV~~~d~A~~~Lee-~gF~Vr~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAF-------v-----~ek~ 108 (142)
T COG4747 42 FGIIRMVVDRPDEAHSVLEE-AGFTVRETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAF-------V-----TEKQ 108 (142)
T ss_pred cceEEEEcCChHHHHHHHHH-CCcEEEeeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeee-------e-----ecCc
Confidence 34566789999999998887 6888765421 0000000 011112222211100 0 0112
Q ss_pred ceEEEEEeCCHHHHHHHHHhCCCeEEe
Q 029568 89 DNHISFQCTDVALVKRRLEDMGMRYVT 115 (191)
Q Consensus 89 ~~hi~f~v~dvd~~~~~l~~~G~~~~~ 115 (191)
-.-+-+.|+|+|++...|+++|+.+..
T Consensus 109 KAlli~r~ed~d~~~~aLed~gi~~~~ 135 (142)
T COG4747 109 KALLIVRVEDIDRAIKALEDAGIKLIG 135 (142)
T ss_pred eEEEEEEhhHHHHHHHHHHHcCCeecC
Confidence 235667889999999999999998764
No 161
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=46.42 E-value=8.6 Score=21.71 Aligned_cols=27 Identities=7% Similarity=0.131 Sum_probs=20.7
Q ss_pred cCcceeeEEEEEeCCHHHHHHHHHHhc
Q 029568 14 LPLLSLNHVSLLCRSVWDSVRFYEDVL 40 (191)
Q Consensus 14 ~~i~~l~hv~i~v~Dl~~a~~FY~~~L 40 (191)
..|..++-.++.+.+.++..+||+..|
T Consensus 7 ~gigp~De~giP~~~vd~~kDWYktMF 33 (47)
T PF02208_consen 7 EGIGPVDESGIPLSNVDRPKDWYKTMF 33 (47)
T ss_pred CCcCccccCCCccccccchhHHHHHHH
Confidence 344555667777899999999999865
No 162
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=45.25 E-value=54 Score=26.69 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=22.1
Q ss_pred CCCceEEEEEe------CCHHHHHHHHHhCCCeEE
Q 029568 86 NPKDNHISFQC------TDVALVKRRLEDMGMRYV 114 (191)
Q Consensus 86 ~~g~~hi~f~v------~dvd~~~~~l~~~G~~~~ 114 (191)
+...+|+...| .|++++.+.|+++|+++.
T Consensus 182 G~~~NH~T~~v~~l~~~~dI~~v~~~l~~~G~~~n 216 (302)
T PF07063_consen 182 GYHINHFTPRVNRLKKFLDIDAVNAFLKERGIPMN 216 (302)
T ss_dssp TCS-SEEEEETTT-TT-S-HHHHHHHHHHTT--B-
T ss_pred ccccceeeceeecccccccHHHHHHHHHHcCCCcc
Confidence 45679999999 999999999999999876
No 163
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=44.17 E-value=53 Score=22.37 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEE
Q 029568 97 TDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMI 138 (191)
Q Consensus 97 ~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~i 138 (191)
.|++.+.+.|++.|+++... +.+|...|.++|.--+|.++
T Consensus 64 rNv~~a~~~L~~~gi~I~a~--dvGG~~~R~v~f~~~tG~v~ 103 (114)
T PF03975_consen 64 RNVEAARELLAEEGIPIVAE--DVGGNFGRKVRFDPATGEVW 103 (114)
T ss_dssp HHHHHHHHHHHHTT--EEEE--EE-SSS-EEEEEETTTTEEE
T ss_pred HHHHHHHHHHHHCCCcEEEe--eCCCCCCcEEEEEcCCCEEE
Confidence 78999999999999998765 34555567787666666544
No 164
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.51 E-value=54 Score=20.85 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=22.3
Q ss_pred ceEEEEEeCC----HHHHHHHHHhCCCeEEe
Q 029568 89 DNHISFQCTD----VALVKRRLEDMGMRYVT 115 (191)
Q Consensus 89 ~~hi~f~v~d----vd~~~~~l~~~G~~~~~ 115 (191)
...+.++|++ ++.+.+.|+++|+++..
T Consensus 41 ~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~ 71 (85)
T cd04906 41 HIFVGVSVANGAEELAELLEDLKSAGYEVVD 71 (85)
T ss_pred EEEEEEEeCCcHHHHHHHHHHHHHCCCCeEE
Confidence 3567778888 99999999999998654
No 165
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.62 E-value=25 Score=27.24 Aligned_cols=22 Identities=18% Similarity=0.457 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHhcCCEEeeec
Q 029568 27 RSVWDSVRFYEDVLGFVLIKRP 48 (191)
Q Consensus 27 ~Dl~~a~~FY~~~LG~~~~~~~ 48 (191)
.|+.+++.||.+.||++.....
T Consensus 145 a~~~e~a~wy~dyLGleie~~h 166 (246)
T KOG4657|consen 145 ADIHEAASWYNDYLGLEIEAGH 166 (246)
T ss_pred hccHHHHHHHHHhcCceeeecc
Confidence 5778899999999999987653
No 166
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=38.00 E-value=79 Score=23.31 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=29.2
Q ss_pred eCCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCE
Q 029568 96 CTDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYM 137 (191)
Q Consensus 96 v~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~ 137 (191)
-.|++.+.+.|.+.|+++... +.+|...|.++|.--+|..
T Consensus 114 ~rNi~~a~~~L~~~gi~i~a~--DvGG~~gR~i~f~~~tG~v 153 (167)
T PRK13498 114 DKNIHAALALAEQNGLHLKAQ--DLGSTGHRSIIFDLWNGNV 153 (167)
T ss_pred HHHHHHHHHHHHHCCCcEEEE--eCCCCCCcEEEEECCCCEE
Confidence 378999999999999998764 3455555777765555554
No 167
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=36.13 E-value=89 Score=22.90 Aligned_cols=39 Identities=18% Similarity=0.428 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCE
Q 029568 97 TDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYM 137 (191)
Q Consensus 97 ~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~ 137 (191)
.|++.+.+.|+++|+++... +.+|...|.++|..-+|.+
T Consensus 112 rNv~~a~~~L~~~gI~i~a~--dvGG~~gR~i~f~~~tG~v 150 (162)
T PRK13490 112 RNGKAVKKKLKELSIPILAE--DIGGNKGRTMIFDTSDGKV 150 (162)
T ss_pred HHHHHHHHHHHHcCCcEEEE--ECCCCCCcEEEEECCCCEE
Confidence 79999999999999998764 3455556777766555655
No 168
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=35.24 E-value=94 Score=22.72 Aligned_cols=40 Identities=25% Similarity=0.561 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEE
Q 029568 97 TDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMI 138 (191)
Q Consensus 97 ~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~i 138 (191)
.|++.+.+.|+++|+++... +.+|...|.++|..-+|..+
T Consensus 105 rNi~~a~~~L~~~gI~i~a~--dvGG~~gR~i~f~~~tG~v~ 144 (159)
T PRK13495 105 RNVEAVKKHLKDFGIKLVAE--DTGGNRARSIEYNIETGKLL 144 (159)
T ss_pred HHHHHHHHHHHHcCCcEEEE--eCCCCCCcEEEEECCCCEEE
Confidence 78999999999999998764 34555567777666666553
No 169
>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional
Probab=33.44 E-value=1.1e+02 Score=22.58 Aligned_cols=39 Identities=10% Similarity=0.241 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCE
Q 029568 97 TDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYM 137 (191)
Q Consensus 97 ~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~ 137 (191)
.|++.+.+.|+++|+++... +.+|...|.++|..-+|..
T Consensus 114 rNv~~a~~~L~~~gI~i~a~--DvGG~~gR~i~f~~~tG~v 152 (163)
T PRK13494 114 ENSEFAVNTLNKYGIPILAK--DFDQSKSRKIFVFPENFKV 152 (163)
T ss_pred HHHHHHHHHHHHcCCcEEEE--eCCCCCCcEEEEECCCCEE
Confidence 78999999999999998764 3455556777766666654
No 170
>PRK06724 hypothetical protein; Provisional
Probab=33.23 E-value=1.6e+02 Score=20.17 Aligned_cols=31 Identities=13% Similarity=0.016 Sum_probs=20.0
Q ss_pred ceeeEEEEEeCCHHHHHHHHHHh--cCCEEeee
Q 029568 17 LSLNHVSLLCRSVWDSVRFYEDV--LGFVLIKR 47 (191)
Q Consensus 17 ~~l~hv~i~v~Dl~~a~~FY~~~--LG~~~~~~ 47 (191)
.+..|+++.|.+.+.-.++++.+ .|.+....
T Consensus 62 ~g~~h~af~v~~~~dvd~~~~~l~~~G~~~~~~ 94 (128)
T PRK06724 62 LGPRHICYQAINRKVVDEVAEFLSSTKIKIIRG 94 (128)
T ss_pred CCceeEEEecCChHHHHHHHHHHHHCCCEEecC
Confidence 35789999985555555555444 68776543
No 171
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=31.81 E-value=1.1e+02 Score=19.49 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=16.3
Q ss_pred EEeCCHHHHHHHHHHhcCCEEeee
Q 029568 24 LLCRSVWDSVRFYEDVLGFVLIKR 47 (191)
Q Consensus 24 i~v~Dl~~a~~FY~~~LG~~~~~~ 47 (191)
....+=..|.++|++ |||+....
T Consensus 60 ~v~~~N~~s~~ly~k-lGf~~~~~ 82 (86)
T PF08445_consen 60 YVDADNEASIRLYEK-LGFREIEE 82 (86)
T ss_dssp EEETT-HHHHHHHHH-CT-EEEEE
T ss_pred EEECCCHHHHHHHHH-cCCEEEEE
Confidence 344677889999988 99998853
No 172
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=31.76 E-value=53 Score=25.30 Aligned_cols=57 Identities=19% Similarity=0.265 Sum_probs=30.8
Q ss_pred EEEEEECCCCCEEEEEeecCCCCcccccC----Cccccch-hhhhhhhhcchhHHHHHhhhhcccc
Q 029568 126 DQVFFHDPDGYMIELCNCENIPIIPLYSC----SFKPRMG-SFKRAAASTCGFLETVMMESLSTDM 186 (191)
Q Consensus 126 ~~~~~~DPdG~~iEl~~~~~~~~~~~~~~----~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (191)
-.+|=.||.|+..-+....--+..-..+. .++.... .+.+ ..-..++.+.+||++|.
T Consensus 149 P~vYk~DpAGyy~g~kAtaaG~Kq~e~tsfLEKk~Kk~~~~t~~e----~ve~ai~al~~sl~~Df 210 (246)
T KOG0182|consen 149 PSVYKTDPAGYYYGFKATAAGVKQQEATSFLEKKYKKDIDLTFEE----TVETAISALQSSLGIDF 210 (246)
T ss_pred cceEeecCccccccceeeecccchhhHHHHHHHhhccCccchHHH----HHHHHHHHHHHHHhccc
Confidence 46899999999998876542222221121 1222211 1222 22345567788888874
No 173
>PRK03467 hypothetical protein; Provisional
Probab=31.66 E-value=2e+02 Score=20.71 Aligned_cols=48 Identities=13% Similarity=0.073 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeec
Q 029568 97 TDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCE 144 (191)
Q Consensus 97 ~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~ 144 (191)
+++..+.+.|++.-+--+......+.|-...+|+.|+++..+-|....
T Consensus 5 ~~~~~I~~fl~~~hvltLa~~~~~~~w~A~cFY~fd~~~~~l~~~S~~ 52 (144)
T PRK03467 5 DTLTAISRWLAKQHVVTLCVGQEGELWCANCFYVFDAQKVAFYLLTEE 52 (144)
T ss_pred hHHHHHHHHHHhCcEEEEEEEcCCCcceEEEEEEEcCCCeEEEEEcCC
Confidence 345666667766654433332233446667889999999999998754
No 174
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional
Probab=31.37 E-value=1.2e+02 Score=22.75 Aligned_cols=40 Identities=18% Similarity=0.239 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEE
Q 029568 97 TDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMI 138 (191)
Q Consensus 97 ~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~i 138 (191)
.|++.+.+.|+++|+++... +.+|...|.++|..-+|..+
T Consensus 112 rNi~~a~~~L~~~gI~i~a~--DvGG~~gR~v~f~~~tG~v~ 151 (184)
T PRK13497 112 QNAAFAMQFLRDEGIPVVGS--STGGEHGRKLEYWPVSGRAR 151 (184)
T ss_pred HHHHHHHHHHHHcCCcEEEE--eCCCCCCcEEEEECCCCeEE
Confidence 78999999999999998764 34555557777766667664
No 175
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=31.35 E-value=1.1e+02 Score=18.11 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=19.2
Q ss_pred eEEEEEeCCHHHHHHHHHhCCCeE
Q 029568 90 NHISFQCTDVALVKRRLEDMGMRY 113 (191)
Q Consensus 90 ~hi~f~v~dvd~~~~~l~~~G~~~ 113 (191)
..+.+.++|.+.+.+.|+++|+++
T Consensus 41 ~~~rl~~~~~~~~~~~L~~~G~~v 64 (66)
T cd04908 41 GILRLIVSDPDKAKEALKEAGFAV 64 (66)
T ss_pred CEEEEEECCHHHHHHHHHHCCCEE
Confidence 445556688889999999999875
No 176
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional
Probab=29.77 E-value=1.2e+02 Score=23.35 Aligned_cols=42 Identities=14% Similarity=0.209 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEE
Q 029568 97 TDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELC 141 (191)
Q Consensus 97 ~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~ 141 (191)
.|++.+.+.|++.|+++... +.+|...|.++|..-+|.. .+.
T Consensus 139 rNi~~a~~~L~~~gI~Iva~--DvGG~~gRki~f~~~tG~v-~vk 180 (213)
T PRK13493 139 KNVEFVLEYAKREKLNVVAQ--DLGGAQPRKLLFDPQTGQA-WVK 180 (213)
T ss_pred HHHHHHHHHHHHcCCcEEEE--eCCCCCCcEEEEECCCCEE-EEE
Confidence 68999999999999998764 3455555777765555544 444
No 177
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=29.75 E-value=78 Score=23.25 Aligned_cols=24 Identities=17% Similarity=0.450 Sum_probs=18.6
Q ss_pred EEEEeCCHHHHHHHHHhCCCeEEe
Q 029568 92 ISFQCTDVALVKRRLEDMGMRYVT 115 (191)
Q Consensus 92 i~f~v~dvd~~~~~l~~~G~~~~~ 115 (191)
+=+.+.|++.+.++|++.|.....
T Consensus 6 ~K~~v~d~~~~~~~L~~~g~~~~~ 29 (174)
T TIGR00318 6 VKAKIPDKEKVVEKLKNKGFKFIK 29 (174)
T ss_pred EEEEcCCHHHHHHHHHhcCccccc
Confidence 345668999999999999976443
No 178
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=29.57 E-value=43 Score=17.30 Aligned_cols=18 Identities=17% Similarity=0.357 Sum_probs=13.8
Q ss_pred EeCCHHHHHHHHHHhcCC
Q 029568 25 LCRSVWDSVRFYEDVLGF 42 (191)
Q Consensus 25 ~v~Dl~~a~~FY~~~LG~ 42 (191)
...|.++++.+|++.|.+
T Consensus 11 ~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 11 QQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HCT-HHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 356889999999997744
No 179
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional
Probab=29.28 E-value=1.4e+02 Score=21.78 Aligned_cols=39 Identities=23% Similarity=0.362 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCE
Q 029568 97 TDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYM 137 (191)
Q Consensus 97 ~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~ 137 (191)
.|++.+.+.|+++|+++... +.+|...|.++|..-+|..
T Consensus 107 rNi~~a~~~L~~~gi~i~a~--dvGG~~gR~i~f~~~tG~v 145 (157)
T PRK13488 107 RNIESAKETLKKLGIRIVAE--DVGGDYGRTVKFDLKTGKV 145 (157)
T ss_pred HHHHHHHHHHHHCCCcEEEE--EcCCCCCcEEEEECCCCEE
Confidence 79999999999999998764 3444455777765555554
No 180
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=29.08 E-value=65 Score=22.41 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=20.3
Q ss_pred eEEEEEeCCHHHHHHHHHhCCCeEE
Q 029568 90 NHISFQCTDVALVKRRLEDMGMRYV 114 (191)
Q Consensus 90 ~hi~f~v~dvd~~~~~l~~~G~~~~ 114 (191)
+||-..-+|++.+.+.|+++|..+.
T Consensus 103 DhiLVr~~dLekAv~~L~eaGhev~ 127 (128)
T COG3603 103 DHILVREEDLEKAVKALEEAGHEVL 127 (128)
T ss_pred ceEEEehhhHHHHHHHHHHcCCccc
Confidence 5665555899999999999998754
No 181
>PRK13491 chemoreceptor glutamine deamidase CheD; Provisional
Probab=28.87 E-value=1.4e+02 Score=22.84 Aligned_cols=41 Identities=24% Similarity=0.437 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEE
Q 029568 97 TDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIE 139 (191)
Q Consensus 97 ~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iE 139 (191)
.|++.+.+.|+++|+++... +.+|...|.++|.--+|.++-
T Consensus 115 rNie~a~~~L~~~GI~ivae--DvGG~~gRkI~f~~~tG~v~v 155 (199)
T PRK13491 115 ANAAFARRYLRDEGIRCTAH--SLGGNRARRIRFWPKTGRVQQ 155 (199)
T ss_pred HHHHHHHHHHHHcCCcEEEE--eCCCCCCcEEEEECCCCEEEE
Confidence 78999999999999998764 345555677877666676653
No 182
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=28.52 E-value=74 Score=14.96 Aligned_cols=12 Identities=25% Similarity=0.551 Sum_probs=8.3
Q ss_pred EEEEECCCCCEE
Q 029568 127 QVFFHDPDGYMI 138 (191)
Q Consensus 127 ~~~~~DPdG~~i 138 (191)
...+.|++|++|
T Consensus 8 ~~i~~D~~G~lW 19 (24)
T PF07494_consen 8 YSIYEDSDGNLW 19 (24)
T ss_dssp EEEEE-TTSCEE
T ss_pred EEEEEcCCcCEE
Confidence 355789999886
No 183
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.01 E-value=79 Score=18.98 Aligned_cols=26 Identities=35% Similarity=0.538 Sum_probs=20.0
Q ss_pred CceEEEEEe---CCHHHHHHHHHhCCCeE
Q 029568 88 KDNHISFQC---TDVALVKRRLEDMGMRY 113 (191)
Q Consensus 88 g~~hi~f~v---~dvd~~~~~l~~~G~~~ 113 (191)
...++.+++ +.++++.+.|+++|+.+
T Consensus 38 ~~v~v~ie~~~~~~~~~i~~~L~~~G~~~ 66 (68)
T cd04885 38 ARVLVGIQVPDREDLAELKERLEALGYPY 66 (68)
T ss_pred eEEEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 345677777 45788899999999874
No 184
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=27.19 E-value=55 Score=27.52 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=20.5
Q ss_pred CCeEEeeeeecCCceeEEEEEECCCCCEEEEEeecCCC
Q 029568 110 GMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCENIP 147 (191)
Q Consensus 110 G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~~~~ 147 (191)
|.++.....+.. |..+.+|+.||+|.+|-=+...+.+
T Consensus 9 Gt~vfDWtVP~E-Wnir~A~I~~~~G~~IvDF~~~nLH 45 (386)
T PF09940_consen 9 GTKVFDWTVPKE-WNIRDAYIKDPDGERIVDFKDNNLH 45 (386)
T ss_dssp T-EETTEE---E-EEEEEEEEE-TTS-EEEETTT-GGG
T ss_pred CCeeecccCCCc-eEEeEEEEECCCCCEEEEccCCcee
Confidence 555544444433 8889999999999998554443333
No 185
>PRK06704 RNA polymerase factor sigma-70; Validated
Probab=27.15 E-value=58 Score=25.24 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=27.3
Q ss_pred EEEeCCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEE
Q 029568 93 SFQCTDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIE 139 (191)
Q Consensus 93 ~f~v~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iE 139 (191)
+|.-.|.+.+++.| .|+.+...+.. .+...|+..|||||-.=
T Consensus 183 ~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 224 (228)
T PRK06704 183 SIREERPELLTKLL--PTIDFTKLPSK---QPVLLFNVKQPSSYSCM 224 (228)
T ss_pred HHHhcCHHHHHHHh--ccceeeecccc---cceEEEEeeCCCccchh
Confidence 33446777777755 66666654421 24577889999998653
No 186
>PRK13487 chemoreceptor glutamine deamidase CheD; Provisional
Probab=26.43 E-value=1.6e+02 Score=22.50 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCE
Q 029568 97 TDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYM 137 (191)
Q Consensus 97 ~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~ 137 (191)
.|++.+.+.|+++|+++... +-+|...|.++|..-+|.+
T Consensus 127 rNi~~a~~~L~~~gI~iva~--DvGG~~gR~v~f~~~tG~v 165 (201)
T PRK13487 127 RNAEFVRDYLQTERIPIVAE--DLLDIYPRKVYFFPTTGKV 165 (201)
T ss_pred HHHHHHHHHHHHcCCcEEEE--ECCCCCCcEEEEECCCCEE
Confidence 78999999999999998764 3455555777766555554
No 187
>PRK10234 DNA-binding transcriptional activator GutM; Provisional
Probab=26.28 E-value=93 Score=21.57 Aligned_cols=49 Identities=12% Similarity=-0.048 Sum_probs=32.9
Q ss_pred eCCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeec
Q 029568 96 CTDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCE 144 (191)
Q Consensus 96 v~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~ 144 (191)
+.+....+++|...|.--..........|.-.....|++|.+++-....
T Consensus 24 ik~Fn~~~~~L~~~G~V~iGr~~grf~~g~IvllaiD~~~~I~d~~~M~ 72 (118)
T PRK10234 24 ISRFNRAFDTLCQQGRVGVGRSSGRFKPRVVVALALDEQQRVVDTLFMK 72 (118)
T ss_pred HHHHHHHHHHHHhcCceEEecccCccCCCeEEEEEECCCCcEEeeEEEc
Confidence 3567888999999986333222112223556677899999999887643
No 188
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=26.11 E-value=1.4e+02 Score=17.01 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=14.1
Q ss_pred EEEEECCCCCEEEEEeec
Q 029568 127 QVFFHDPDGYMIELCNCE 144 (191)
Q Consensus 127 ~~~~~DPdG~~iEl~~~~ 144 (191)
+..+.||||..+.|....
T Consensus 30 sY~y~~pdG~~~~V~Y~A 47 (52)
T PF00379_consen 30 SYSYIDPDGQTRTVTYVA 47 (52)
T ss_pred EEEEECCCCCEEEEEEEC
Confidence 355899999999988653
No 189
>PF06923 GutM: Glucitol operon activator protein (GutM); InterPro: IPR009693 This family consists of several glucitol operon activator (GutM) proteins. Expression of the glucitol (gut) operon in Escherichia coli is regulated by an unusual, complex system, which consists of an activator (encoded by the gutM gene) and a repressor (encoded by the gutR gene) in addition to the cAMP-CRP complex (CRP, cAMP receptor protein). Synthesis of the mRNA, which initiates at the promoter specific to the gutR gene, occurs within the gutM gene. Expressional control of the gut operon appears to occur as a consequence of the antagonistic action of the products of the autogenously regulated gutM and gutR genes [].
Probab=25.90 E-value=2.2e+02 Score=19.33 Aligned_cols=48 Identities=13% Similarity=0.055 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeec
Q 029568 97 TDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCE 144 (191)
Q Consensus 97 ~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~ 144 (191)
.+....+++|...|.-...........|.-.+...|++|...+-..-.
T Consensus 24 k~f~~~~~~l~~~G~V~iG~~~g~f~~g~Ivlla~D~~~~I~~~~~M~ 71 (109)
T PF06923_consen 24 KNFNKAYKELRKKGRVGIGRSKGRFRPGVIVLLAVDEDGRIVDAEIMK 71 (109)
T ss_pred HHHHHHHHHHHhCCcEEEeeecCcccCCeEEEEEECCCCcEEEEEEEe
Confidence 567888999999994333322122223667777899999999887653
No 190
>PRK14707 hypothetical protein; Provisional
Probab=24.66 E-value=1.5e+02 Score=30.98 Aligned_cols=47 Identities=17% Similarity=0.237 Sum_probs=30.9
Q ss_pred CHHHHHHHHHhCCCeEEeeeee--c--CCceeEEEEEECCCCCEEEEEeec
Q 029568 98 DVALVKRRLEDMGMRYVTAVVE--D--DGTRVDQVFFHDPDGYMIELCNCE 144 (191)
Q Consensus 98 dvd~~~~~l~~~G~~~~~~~~~--~--~g~g~~~~~~~DPdG~~iEl~~~~ 144 (191)
.+..+...|.+.|+..+.-... . ..+..-.+.++||+|++|||+-.+
T Consensus 2357 ~~r~Il~aL~~qGy~~vkvkN~F~~~~~~YkGINvtL~~pdG~~FEIQFHT 2407 (2710)
T PRK14707 2357 GLRAVLAALDDQGHARVKLTNQFTEYSPSFKAINLTLRSPEGALWEIQFHT 2407 (2710)
T ss_pred HHHHHHHHHHHcCCeEEEEeecccCCCCCccceEEEEEcCCCcEEEEEecc
Confidence 3566778889999986654321 1 122223345799999999998743
No 191
>COG5397 Uncharacterized conserved protein [Function unknown]
Probab=23.92 E-value=67 Score=25.90 Aligned_cols=52 Identities=15% Similarity=0.252 Sum_probs=32.9
Q ss_pred EEEEEe-CCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeec
Q 029568 91 HISFQC-TDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCE 144 (191)
Q Consensus 91 hi~f~v-~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~ 144 (191)
-|..+| +.++.+.+-|+.....+...|.. .+.+ ++.-+..++|+.+||.+..
T Consensus 160 aiS~evdDsl~~il~lLr~~D~sFrpvPh~-~d~a-k~~~fqn~~~y~VefLTtn 212 (349)
T COG5397 160 AISREVDDSLPPILDLLRSVDPSFRPVPHR-SDPA-KSSAFQNRDGYRVEFLTTN 212 (349)
T ss_pred hhhHHhcccccHHHHHHhccCcccccCCcc-CCCc-cceeeecCCCeEEEEeccC
Confidence 344455 45777778887666655544422 2222 4455699999999999843
No 192
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=23.76 E-value=2.1e+02 Score=20.00 Aligned_cols=29 Identities=14% Similarity=0.051 Sum_probs=24.1
Q ss_pred CCceEEEEEeCCHHHHHHHHHhCCCeEEe
Q 029568 87 PKDNHISFQCTDVALVKRRLEDMGMRYVT 115 (191)
Q Consensus 87 ~g~~hi~f~v~dvd~~~~~l~~~G~~~~~ 115 (191)
+.++-|-+.|++-|.+++.|+++|..+..
T Consensus 40 ~dFGIiRmvV~~~d~A~~~Lee~gF~Vr~ 68 (142)
T COG4747 40 GDFGIIRMVVDRPDEAHSVLEEAGFTVRE 68 (142)
T ss_pred cCcceEEEEcCChHHHHHHHHHCCcEEEe
Confidence 34677888899999999999999988654
No 193
>PHA02103 hypothetical protein
Probab=23.27 E-value=2.5e+02 Score=19.14 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=26.3
Q ss_pred HHHHHhCCCeEEeeeeecCC----ceeEEEEEECCCCCEEEEE
Q 029568 103 KRRLEDMGMRYVTAVVEDDG----TRVDQVFFHDPDGYMIELC 141 (191)
Q Consensus 103 ~~~l~~~G~~~~~~~~~~~g----~g~~~~~~~DPdG~~iEl~ 141 (191)
.+..++.|+.-+..|.+... ...+.+...||||+.+.+.
T Consensus 92 ie~we~ygve~l~~p~he~~ypkn~~~yeiiyt~~d~~k~~vt 134 (135)
T PHA02103 92 VELWEEYGVEGLCWPCHECDYPKNFKGYEIIYTGPDGNKFKVT 134 (135)
T ss_pred hhHHHHhCcceeeeccccccCCccccceEEEEECCCCceEEee
Confidence 34557789988887754321 2345666799999987653
No 194
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=23.24 E-value=1.6e+02 Score=25.79 Aligned_cols=38 Identities=21% Similarity=0.208 Sum_probs=25.8
Q ss_pred HHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEE
Q 029568 102 VKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIEL 140 (191)
Q Consensus 102 ~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl 140 (191)
+...|.++|..++.-... .--|.+..-.+|+||+..|=
T Consensus 15 ~a~~La~~g~~vt~~ea~-~~~GGk~~s~~~~dg~~~E~ 52 (485)
T COG3349 15 AAYELADAGYDVTLYEAR-DRLGGKVASWRDSDGNHVEH 52 (485)
T ss_pred HHHHHHhCCCceEEEecc-CccCceeeeeecCCCCeeee
Confidence 446778889886543221 11255888899999999874
No 195
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=23.19 E-value=2.4e+02 Score=19.11 Aligned_cols=34 Identities=15% Similarity=0.313 Sum_probs=27.0
Q ss_pred HHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEEeec
Q 029568 99 VALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELCNCE 144 (191)
Q Consensus 99 vd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~~~~ 144 (191)
+.++.+.|++.|+. -+++|+.+|.++++-..++.
T Consensus 26 WPE~~a~lk~agi~------------nYSIfLde~~n~lFgy~E~~ 59 (105)
T COG3254 26 WPELLALLKEAGIR------------NYSIFLDEEENLLFGYWEYE 59 (105)
T ss_pred cHHHHHHHHHcCCc------------eeEEEecCCcccEEEEEEEc
Confidence 46666777777763 27799999999999999986
No 196
>COG1871 CheD Chemotaxis protein; stimulates methylation of MCP proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=23.08 E-value=1.9e+02 Score=21.32 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=29.1
Q ss_pred eCCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEE
Q 029568 96 CTDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMI 138 (191)
Q Consensus 96 v~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~i 138 (191)
-.|+..+.+.|++.|++++..- .+|...|.++|.--+|-.+
T Consensus 113 ~rNv~~~~~~L~~~~IpilaeD--~Gg~~gR~i~F~p~tG~v~ 153 (164)
T COG1871 113 ERNVEFAKEFLKDEGIPILAED--TGGDSGRTIEFNPSTGRVR 153 (164)
T ss_pred hHHHHHHHHHHHHcCCcEEEhh--hCCCCCcEEEEecCCCcEE
Confidence 3789999999999999987653 3444457777655555543
No 197
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.05 E-value=2e+02 Score=18.03 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=27.5
Q ss_pred HHHHHHHHHhCCCeEEeeeee--cCCc-eeEEEEEECCCCCE
Q 029568 99 VALVKRRLEDMGMRYVTAVVE--DDGT-RVDQVFFHDPDGYM 137 (191)
Q Consensus 99 vd~~~~~l~~~G~~~~~~~~~--~~g~-g~~~~~~~DPdG~~ 137 (191)
+-.+.+.+.+.|+.+....+. ..|. -...||+ |.+|..
T Consensus 14 L~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~k 54 (75)
T cd04896 14 LYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKK 54 (75)
T ss_pred HHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCc
Confidence 345667788889999888777 6554 4567777 887765
No 198
>PRK13489 chemoreceptor glutamine deamidase CheD; Provisional
Probab=22.81 E-value=2e+02 Score=22.57 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCCCCEEEEE
Q 029568 97 TDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPDGYMIELC 141 (191)
Q Consensus 97 ~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPdG~~iEl~ 141 (191)
.|++.+.+.|++.|+++... +.+|...|.++|..-+|.+ .+.
T Consensus 125 RNieaa~~~L~~~gI~Ivae--DvGG~~gRkV~f~~~TG~v-~Vk 166 (233)
T PRK13489 125 RNADFVRRYLALERIRITAE--DLQGVHPRKVAFMPRTGRA-MVK 166 (233)
T ss_pred HHHHHHHHHHHHcCCcEEEE--eCCCCCCcEEEEECCCCEE-EEE
Confidence 78999999999999998764 3455555777765555554 444
No 199
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.23 E-value=2e+02 Score=17.71 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=25.7
Q ss_pred HHHHHHHHHhCCCeEEeeeeec--CCceeEEEEEECCCCC
Q 029568 99 VALVKRRLEDMGMRYVTAVVED--DGTRVDQVFFHDPDGY 136 (191)
Q Consensus 99 vd~~~~~l~~~G~~~~~~~~~~--~g~g~~~~~~~DPdG~ 136 (191)
+-.+...+...|+.+....... .+.-...|++.|++|.
T Consensus 14 fa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~ 53 (76)
T cd04927 14 LHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL 53 (76)
T ss_pred HHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC
Confidence 4566788889999988765542 2334566777777665
No 200
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.11 E-value=97 Score=18.32 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=17.0
Q ss_pred eEEEEEe---CCHHHHHHHHHhCCCe
Q 029568 90 NHISFQC---TDVALVKRRLEDMGMR 112 (191)
Q Consensus 90 ~hi~f~v---~dvd~~~~~l~~~G~~ 112 (191)
..+.+.+ ++.+.+.+.|+++|++
T Consensus 43 ~~~~i~v~~~~~~~~~~~~L~~~G~~ 68 (69)
T cd04909 43 GILRISFKTQEDRERAKEILKEAGYE 68 (69)
T ss_pred EEEEEEECCHHHHHHHHHHHHHcCCc
Confidence 3344555 5678999999999985
No 201
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=21.56 E-value=2.9e+02 Score=21.03 Aligned_cols=48 Identities=21% Similarity=0.311 Sum_probs=30.5
Q ss_pred CCceEEEEEeCCHHHHHHHHHhCCCeEEeeeeecCCceeEEEEEECCC
Q 029568 87 PKDNHISFQCTDVALVKRRLEDMGMRYVTAVVEDDGTRVDQVFFHDPD 134 (191)
Q Consensus 87 ~g~~hi~f~v~dvd~~~~~l~~~G~~~~~~~~~~~g~g~~~~~~~DPd 134 (191)
.++.+|.+.-.|+..+...++..|+.+..-.....+.+.+.++|.-.|
T Consensus 32 ~~l~~i~i~~~~lk~F~k~AkKyGV~yav~kdk~~~~~~~~V~FkA~D 79 (204)
T PF12687_consen 32 KGLKNIEITDEDLKEFKKEAKKYGVDYAVKKDKSTGPGKYDVFFKAKD 79 (204)
T ss_pred CCceEEecCHhhHHHHHHHHHHcCCceEEeeccCCCCCcEEEEEEcCc
Confidence 346777776689999999999999975543322222234555555444
No 202
>PTZ00330 acetyltransferase; Provisional
Probab=21.51 E-value=1.3e+02 Score=20.44 Aligned_cols=24 Identities=46% Similarity=0.709 Sum_probs=16.8
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCEEeee
Q 029568 21 HVSLLCRSVWDSVRFYEDVLGFVLIKR 47 (191)
Q Consensus 21 hv~i~v~Dl~~a~~FY~~~LG~~~~~~ 47 (191)
.+.+.+. ..+.+||++ +||+....
T Consensus 118 ~l~l~~n--~~a~~~y~k-~GF~~~~~ 141 (147)
T PTZ00330 118 KVILDCT--EDMVAFYKK-LGFRACER 141 (147)
T ss_pred EEEEecC--hHHHHHHHH-CCCEEece
Confidence 3444443 578999977 99988753
No 203
>PRK13688 hypothetical protein; Provisional
Probab=21.21 E-value=1.4e+02 Score=21.60 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=14.2
Q ss_pred HHHHHHHHhcCCEEeeec
Q 029568 31 DSVRFYEDVLGFVLIKRP 48 (191)
Q Consensus 31 ~a~~FY~~~LG~~~~~~~ 48 (191)
.+..||++ +||+.....
T Consensus 118 ~a~~FY~k-~GF~~~~~~ 134 (156)
T PRK13688 118 KSKDFWLK-LGFTPVEYK 134 (156)
T ss_pred chHHHHHh-CCCEEeEEe
Confidence 57899987 999998764
No 204
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=20.88 E-value=3.6e+02 Score=25.39 Aligned_cols=52 Identities=27% Similarity=0.433 Sum_probs=41.2
Q ss_pred CceEEEEEeCC----HHHHHHHHHhCCCeEEeeeeec--CCceeEEEEEECCCCCEEE
Q 029568 88 KDNHISFQCTD----VALVKRRLEDMGMRYVTAVVED--DGTRVDQVFFHDPDGYMIE 139 (191)
Q Consensus 88 g~~hi~f~v~d----vd~~~~~l~~~G~~~~~~~~~~--~g~g~~~~~~~DPdG~~iE 139 (191)
+...|.+..+| +..+...+.++|.++...-+.. .|....++++.||+|..++
T Consensus 683 ~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~ 740 (867)
T COG2844 683 GGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVE 740 (867)
T ss_pred CceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccc
Confidence 66788888888 8888899999999877765432 3445788999999998887
No 205
>PHA00450 host dGTPase inhibitor
Probab=20.58 E-value=2.5e+02 Score=18.06 Aligned_cols=45 Identities=11% Similarity=0.071 Sum_probs=31.2
Q ss_pred CHHHHHHHHHhCCCeEEeeeeecCCc--eeEEEEEECCCCCEEEEEe
Q 029568 98 DVALVKRRLEDMGMRYVTAVVEDDGT--RVDQVFFHDPDGYMIELCN 142 (191)
Q Consensus 98 dvd~~~~~l~~~G~~~~~~~~~~~g~--g~~~~~~~DPdG~~iEl~~ 142 (191)
++.++.+||.+..+.++......... .....-+.|-+|++|--.+
T Consensus 11 afKaA~~RL~q~D~aVi~e~~~~~~~~k~c~~LRvedR~G~~i~s~t 57 (85)
T PHA00450 11 AFKAATARLFEHDVAVIVEEFYYENPAKMCMSLRVEDRSGHLIASRT 57 (85)
T ss_pred HHHHHHHHHHhcceeEEEeehhccchhhheeEEEEEecCCCEeeeee
Confidence 45678899999888877665432222 3345668899999997654
No 206
>PF02952 Fucose_iso_C: L-fucose isomerase, C-terminal domain; InterPro: IPR015888 L-fucose isomerase (5.3.1.25 from EC) converts the aldose L-fucose into the corresponding ketose L-fuculose during the first step in fucose metabolism using Mn2+ as a cofactor. The enzyme is a hexamer, forming the largest structurally known ketol isomerase, and has no sequence or structural similarity with other ketol isomerases. The structure was determined by X-ray crystallography at 2.5 A resolution []. This entry represents the C-terminal domain of L-fucose isomerase.; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 1FUI_E 3A9R_A 3A9T_C 3A9S_C.
Probab=20.26 E-value=1.5e+02 Score=20.78 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=20.6
Q ss_pred eeEEEEEeCCHHHHHHHHHHhcCCEEe
Q 029568 19 LNHVSLLCRSVWDSVRFYEDVLGFVLI 45 (191)
Q Consensus 19 l~hv~i~v~Dl~~a~~FY~~~LG~~~~ 45 (191)
-+|+.+..-|..+...-..+.||.++.
T Consensus 113 ~hH~~~~~G~~~~~l~~~~~~lgi~v~ 139 (142)
T PF02952_consen 113 AHHVALVYGDYAEELKELAKYLGIEVV 139 (142)
T ss_dssp SSEEEEEES--HHHHHHHHHHHT--EE
T ss_pred CCeEEEEcCcHHHHHHHHHHHcCCEEE
Confidence 479999999999999999999999875
No 207
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=20.11 E-value=1.7e+02 Score=20.19 Aligned_cols=30 Identities=13% Similarity=0.310 Sum_probs=21.2
Q ss_pred eeeEEEEEe-CCHHHHHHHHHHhcCCEEeeec
Q 029568 18 SLNHVSLLC-RSVWDSVRFYEDVLGFVLIKRP 48 (191)
Q Consensus 18 ~l~hv~i~v-~Dl~~a~~FY~~~LG~~~~~~~ 48 (191)
++..+.+.| .+=..+.+||++ +||...+..
T Consensus 112 ~~~~i~l~v~~~N~~a~~~y~k-~GF~~~g~~ 142 (162)
T PRK10140 112 RVDRIELTVFVDNAPAIKVYKK-YGFEIEGTG 142 (162)
T ss_pred CccEEEEEEEcCCHHHHHHHHH-CCCEEEeec
Confidence 345566655 445678999976 999988764
Done!