Query 029570
Match_columns 191
No_of_seqs 36 out of 38
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 15:02:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029570.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029570hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03121 nucleic acid binding 60.5 2.8 6.1E-05 37.3 -0.0 26 21-47 58-83 (243)
2 PF10625 UspB: Universal stres 57.9 4 8.6E-05 32.8 0.4 9 5-13 44-52 (107)
3 PRK04960 universal stress prot 51.3 6.3 0.00014 31.8 0.6 10 4-13 43-52 (111)
4 KOG4745 Metalloproteinase inhi 39.1 21 0.00045 29.9 1.8 51 11-62 18-77 (141)
5 cd03576 NTR_PCOLCE NTR domain, 27.0 53 0.0011 26.2 2.3 27 19-47 80-106 (124)
6 KOG4849 mRNA cleavage factor I 23.6 22 0.00047 34.4 -0.6 28 10-37 114-141 (498)
7 KOG2712 Transcriptional coacti 23.4 33 0.00071 27.7 0.5 23 166-188 45-67 (108)
8 cd03579 NTR_netrin-1_like NTR 22.3 71 0.0015 24.1 2.1 13 20-32 65-77 (115)
9 KOG4254 Phytoene desaturase [C 21.6 36 0.00078 33.8 0.4 43 36-80 311-360 (561)
10 PF04051 TRAPP: Transport prot 21.4 35 0.00077 26.9 0.3 41 34-77 71-115 (152)
11 PF01734 Patatin: Patatin-like 20.5 40 0.00088 24.3 0.4 20 3-22 1-20 (204)
No 1
>PLN03121 nucleic acid binding protein; Provisional
Probab=60.53 E-value=2.8 Score=37.30 Aligned_cols=26 Identities=23% Similarity=0.465 Sum_probs=23.2
Q ss_pred cceeeeeccCCCCCCCeeeccCcceee
Q 029570 21 GLTLLFLGQKNDDDKPMRVSPWNQYQL 47 (191)
Q Consensus 21 GL~LLllG~k~e~~kpmrv~pWNqy~l 47 (191)
-.||||-|+.-. ++||.|.||.+|++
T Consensus 58 etAllLnGa~l~-d~~I~It~~~~y~~ 83 (243)
T PLN03121 58 ETAVLLSGATIV-DQRVCITRWGQYED 83 (243)
T ss_pred HHHHhcCCCeeC-CceEEEEeCccccc
Confidence 357889999988 99999999999997
No 2
>PF10625 UspB: Universal stress protein B (UspB); InterPro: IPR019598 Universal stress protein B (UspB) in Escherichia coli is a 14kDa protein which is predicted to be an integral membrane protein. Over expression of UspB results in cell death in stationary phase, and mutants of UspB are sensitive to ethanol exposure during stationary phase [].
Probab=57.85 E-value=4 Score=32.77 Aligned_cols=9 Identities=56% Similarity=1.357 Sum_probs=8.1
Q ss_pred eeeCceeec
Q 029570 5 VEGGGFFSS 13 (191)
Q Consensus 5 vEgGGfFSs 13 (191)
|+|||||+|
T Consensus 44 VDG~GFFtt 52 (107)
T PF10625_consen 44 VDGNGFFTT 52 (107)
T ss_pred ccCCCceec
Confidence 899999986
No 3
>PRK04960 universal stress protein UspB; Provisional
Probab=51.34 E-value=6.3 Score=31.81 Aligned_cols=10 Identities=70% Similarity=1.378 Sum_probs=8.6
Q ss_pred eeeeCceeec
Q 029570 4 AVEGGGFFSS 13 (191)
Q Consensus 4 avEgGGfFSs 13 (191)
-|+|+|||++
T Consensus 43 ~VDG~GFFtt 52 (111)
T PRK04960 43 YVDGGGFFTS 52 (111)
T ss_pred eecCCceeec
Confidence 3899999986
No 4
>KOG4745 consensus Metalloproteinase inhibitor TIMP and related proteins [General function prediction only]
Probab=39.09 E-value=21 Score=29.95 Aligned_cols=51 Identities=24% Similarity=0.386 Sum_probs=37.2
Q ss_pred eeccCccccccce----eeeeccCCCCCCCee-----eccCcceeeeccCCCCCCccccch
Q 029570 11 FSSSASGYSKGLT----LLFLGQKNDDDKPMR-----VSPWNQYQLVDQEPDPDPDLQLAS 62 (191)
Q Consensus 11 FSsSAsGYs~GL~----LLllG~k~e~~kpmr-----v~pWNqy~lV~~e~d~~~~~qlas 62 (191)
+++||-|+.+-+- +||-|+-..|+|=.- |.||++-+|..+|.= .+-++++-
T Consensus 18 ~~es~CG~~l~~~~~keYLlaGrv~~dg~l~itlC~~v~pwd~ls~~qre~~-~~~y~~~c 77 (141)
T KOG4745|consen 18 ADESACGLKLDVGGKKEYLLAGRVEGDGKLLITLCDFVVPWDRLSLTQREGL-NHWYHVGC 77 (141)
T ss_pred ccccccceeeecCCcEEEEEeeeecCCCcEEEEeeceEeechhcchHHhccc-cceeeecc
Confidence 4678888876544 888898887666555 689999999877765 24555554
No 5
>cd03576 NTR_PCOLCE NTR domain, PCOLCE subfamily; Procollagen C-endopeptidase enhancers (PCOLCEs) are extracellular matrix proteins that enhance the activity of procollagen C-proteases, by binding to the procollagen I C-peptide. They contain a C-terminal NTR domain, which have been suggested to possess inhibitory functions towards specific serine proteases but not towards metzincins, which are inhibited by the related TIMPs.
Probab=27.05 E-value=53 Score=26.24 Aligned_cols=27 Identities=19% Similarity=0.669 Sum_probs=17.9
Q ss_pred cccceeeeeccCCCCCCCeeeccCcceee
Q 029570 19 SKGLTLLFLGQKNDDDKPMRVSPWNQYQL 47 (191)
Q Consensus 19 s~GL~LLllG~k~e~~kpmrv~pWNqy~l 47 (191)
..|..+||+||-+++.++ .+.| ++|-+
T Consensus 80 r~g~~YliMG~v~~~gr~-~i~p-~SfV~ 106 (124)
T cd03576 80 RRGLNYILMGQVDEEGRG-VIPP-ESFVM 106 (124)
T ss_pred ccCCEEEEEeecCCCCCc-ccCC-ccEEE
Confidence 468999999996664455 4444 55543
No 6
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=23.60 E-value=22 Score=34.44 Aligned_cols=28 Identities=36% Similarity=0.596 Sum_probs=22.1
Q ss_pred eeeccCccccccceeeeeccCCCCCCCe
Q 029570 10 FFSSSASGYSKGLTLLFLGQKNDDDKPM 37 (191)
Q Consensus 10 fFSsSAsGYs~GL~LLllG~k~e~~kpm 37 (191)
||--=+.|-|||.|||.||...--.|-|
T Consensus 114 FFENR~NGQSKG~AL~~~~SdAa~Kq~M 141 (498)
T KOG4849|consen 114 FFENRTNGQSKGYALLVLNSDAAVKQTM 141 (498)
T ss_pred hhhcccCCcccceEEEEecchHHHHHHH
Confidence 8888899999999999999755433333
No 7
>KOG2712 consensus Transcriptional coactivator [Transcription]
Probab=23.39 E-value=33 Score=27.65 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.4
Q ss_pred cccccceeeccccCCcceeeecc
Q 029570 166 HTERRKVQWTDTCGSELAEIREF 188 (191)
Q Consensus 166 ~~~krkVqW~D~~GkeL~ei~Ef 188 (191)
.-..|.|.=.++-|+.++.||||
T Consensus 45 l~~~RrVtV~eFkGk~~VdIREy 67 (108)
T KOG2712|consen 45 LGKNRRVTVREFKGKILVDIREY 67 (108)
T ss_pred cCCceEEehhhcCCceEEehhHh
Confidence 44678899999999999999999
No 8
>cd03579 NTR_netrin-1_like NTR domain, Netrin-1-like subfamily; The C-terminal NTR domain of netrins is also called domain C in the context of C. elegans netrin UNC-6. Netrins are secreted proteins that function as tropic cues in the direction of axon growth and cell migration during neural development. These proteins may be chemoattractive to some neurons and chemorepellant for others. In the case of netrin-1, attraction and repulsion responses are mediated by the DCC and UNC-5 receptor families. The biological activities of C. elegans UNC-6, which may either attract or repel migrating cells or axons, are mediated by its different domains. The C-terminal NTR domain of UNC-6 has been shown to inhibit axon branching activity.
Probab=22.26 E-value=71 Score=24.14 Aligned_cols=13 Identities=38% Similarity=0.731 Sum_probs=11.3
Q ss_pred ccceeeeeccCCC
Q 029570 20 KGLTLLFLGQKND 32 (191)
Q Consensus 20 ~GL~LLllG~k~e 32 (191)
.|-.+|++|+.++
T Consensus 65 ~g~~YLImG~~~~ 77 (115)
T cd03579 65 VGKSYLLLGKDED 77 (115)
T ss_pred CCCEEEEEeccCC
Confidence 5889999999876
No 9
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=21.60 E-value=36 Score=33.84 Aligned_cols=43 Identities=26% Similarity=0.568 Sum_probs=28.1
Q ss_pred Ceee---ccCcce-eeeccCCCCCCc--cccchhhhcccC-CCCcceeeecc
Q 029570 36 PMRV---SPWNQY-QLVDQEPDPDPD--LQLASAAKNRLS-RGCASFVCFGR 80 (191)
Q Consensus 36 pmrv---~pWNqy-~lV~~e~d~~~~--~qlas~~kn~~s-~gCASFVCFGr 80 (191)
+|-| +|||-| +|+-+|+=|..- -|+.- -+-.. -.|+||+|--.
T Consensus 311 k~VvSNAt~~~Tf~kLlp~e~LPeef~i~q~d~--~spv~k~~~psFl~~~~ 360 (561)
T KOG4254|consen 311 KIVVSNATPWDTFEKLLPGEALPEEFVIQQLDT--VSPVTKDKLPSFLCLPN 360 (561)
T ss_pred eeeecCCchHHHHHHhCCCccCCchhhhhhccc--ccccccccCcceeecCC
Confidence 5555 799999 999999985441 13321 22333 48999999533
No 10
>PF04051 TRAPP: Transport protein particle (TRAPP) component; InterPro: IPR007194 TRAPP plays a key role in the targeting and/or fusion of ER-to-Golgi transport vesicles with their acceptor compartment. TRAPP is a large multimeric protein that contains at least 10 subunits. This family contains many TRAPP family proteins. The Bet3 subunit is one of the better characterised TRAPP proteins and has a dimeric structure [] with hydrophobic channels. The channel entrances are located on a putative membrane-interacting surface that is distinctively flat, wide and decorated with positively charged residues. Bet3 is proposed to localise TRAPP to the Golgi [].; PDB: 2J3R_A 1WC9_A 2J3T_A 2PWN_A 2J3W_E 1WC8_A 3CUE_N 2C0J_B 3KXC_A 2CFH_A ....
Probab=21.42 E-value=35 Score=26.93 Aligned_cols=41 Identities=17% Similarity=0.198 Sum_probs=26.7
Q ss_pred CCCeeeccCcc----eeeeccCCCCCCccccchhhhcccCCCCcceee
Q 029570 34 DKPMRVSPWNQ----YQLVDQEPDPDPDLQLASAAKNRLSRGCASFVC 77 (191)
Q Consensus 34 ~kpmrv~pWNq----y~lV~~e~d~~~~~qlas~~kn~~s~gCASFVC 77 (191)
.|++...-||| |-|+|.+.-+..-..++. +.-.-.|..|+|
T Consensus 71 gk~~d~l~~n~~~~~y~i~d~~~~~~~~v~~p~---~~~~l~~~~f~~ 115 (152)
T PF04051_consen 71 GKQADNLKTNHDRGEYVITDNDFPLNQFVSLPE---EYEGLNYLAFPC 115 (152)
T ss_dssp SS--SEEEEETTSTEEEEEEST-CCCTTSTTCG---CGTTSHTTHHHH
T ss_pred CCCCccccccCCCCeEEEecCccchhhhhccch---hhccCchhhhHH
Confidence 36677888999 999999877555555554 222346888887
No 11
>PF01734 Patatin: Patatin-like phospholipase This Prosite family is a subset of the Pfam family; InterPro: IPR002641 This domain is structurally and functionally related to the animal cytosolic phospholipase A2. This domain is found in the patatin glycoproteins from the total soluble protein in potato tubers []. Patatin is a storage protein but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids [].; GO: 0006629 lipid metabolic process; PDB: 3TU3_B 4AKX_B 1OXW_A.
Probab=20.45 E-value=40 Score=24.26 Aligned_cols=20 Identities=35% Similarity=0.526 Sum_probs=15.0
Q ss_pred eeeeeCceeeccCccccccc
Q 029570 3 LAVEGGGFFSSSASGYSKGL 22 (191)
Q Consensus 3 lavEgGGfFSsSAsGYs~GL 22 (191)
|+..|||....-..|+-+.|
T Consensus 1 LvlsGGG~rg~~~~G~l~~L 20 (204)
T PF01734_consen 1 LVLSGGGSRGAYQAGVLKAL 20 (204)
T ss_dssp EEE---CCGCCCCHHHHHHH
T ss_pred CEEcCcHHHHHHHHHHHHHH
Confidence 68899999999889998887
Done!