BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029571
         (191 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1OBF|O Chain O, The Crystal Structure Of Glyceraldehyde 3-Phosphate
           Dehydrogenase From Alcaligenes Xylosoxidans At 1.7
           Resolution.
 pdb|1OBF|P Chain P, The Crystal Structure Of Glyceraldehyde 3-Phosphate
           Dehydrogenase From Alcaligenes Xylosoxidans At 1.7
           Resolution
          Length = 335

 Score = 28.9 bits (63), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 19/109 (17%)

Query: 46  LNGLALAVEKPGFFIVDYN-VPKKDFRFQFMNSVRVADKPLNLTYIHGRGDNRTILEGTL 104
           LNG A+ V      IVD + V K++   + +N +  A            G+    L+G L
Sbjct: 229 LNGYAIRVPTINVSIVDLSFVAKRNTTVEEVNGILKAAS---------EGE----LKGIL 275

Query: 105 VFDSANKVSA--NHVLGSGNCKLKYTYVHGGLTTFEQWYDLAKNSWDFA 151
            +++   VS   NH   S       T V G L     WYD   N W F+
Sbjct: 276 DYNTEPLVSVDYNHDPASSTVDASLTKVSGRLVKVSSWYD---NEWGFS 321


>pdb|3MN8|A Chain A, Structure Of Drosophila Melanogaster Carboxypeptidase D
           Isoform 1b Short
 pdb|3MN8|B Chain B, Structure Of Drosophila Melanogaster Carboxypeptidase D
           Isoform 1b Short
 pdb|3MN8|C Chain C, Structure Of Drosophila Melanogaster Carboxypeptidase D
           Isoform 1b Short
 pdb|3MN8|D Chain D, Structure Of Drosophila Melanogaster Carboxypeptidase D
           Isoform 1b Short
          Length = 435

 Score = 28.9 bits (63), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 8/112 (7%)

Query: 74  FMNSVRVADKPLNLTYIHGRGDNRTILEGTLVFDS-ANKVSANH-VLGSGN-CKLKYTYV 130
           F     VA  P + +  H      ++     VF   A+  S NH ++  GN C   ++  
Sbjct: 216 FHGGAVVASYPYDNSLAHNECCEESLTPDDRVFKQLAHTYSDNHPIMRKGNNCNDSFS-- 273

Query: 131 HGGLTTFEQWYDLAKNSWDF--AVSRKVYGDDMFRASYQTSSKALALEWSRN 180
            GG+T    WY+L+    DF  A S               ++  L  EW RN
Sbjct: 274 -GGITNGAHWYELSGGMQDFNYAFSNCFELTIELSCCKYPAASTLPQEWQRN 324


>pdb|3GNQ|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
           Dehydrogenase, Type I From Burkholderia Pseudomallei
 pdb|3GNQ|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
           Dehydrogenase, Type I From Burkholderia Pseudomallei
 pdb|3GNQ|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
           Dehydrogenase, Type I From Burkholderia Pseudomallei
 pdb|3GNQ|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
           Dehydrogenase, Type I From Burkholderia Pseudomallei
 pdb|3GNQ|E Chain E, Crystal Structure Of Glyceraldehyde-3-Phosphate
           Dehydrogenase, Type I From Burkholderia Pseudomallei
 pdb|3GNQ|F Chain F, Crystal Structure Of Glyceraldehyde-3-Phosphate
           Dehydrogenase, Type I From Burkholderia Pseudomallei
 pdb|3GNQ|G Chain G, Crystal Structure Of Glyceraldehyde-3-Phosphate
           Dehydrogenase, Type I From Burkholderia Pseudomallei
 pdb|3GNQ|H Chain H, Crystal Structure Of Glyceraldehyde-3-Phosphate
           Dehydrogenase, Type I From Burkholderia Pseudomallei
          Length = 344

 Score = 27.3 bits (59), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 19/109 (17%)

Query: 46  LNGLALAVEKPGFFIVDYN-VPKKDFRFQFMNSVRVADKPLNLTYIHGRGDNRTILEGTL 104
           L+G A+ V      IVD + + K+D     +N++              +  +   L+G L
Sbjct: 238 LDGYAIRVPTINVSIVDLSFIAKRDTTAAEVNAIM-------------KEASEGALKGIL 284

Query: 105 VFDSANKVSA--NHVLGSGNCKLKYTYVHGGLTTFEQWYDLAKNSWDFA 151
            ++ A  VS   NH   S       T V G L     WYD   N W F+
Sbjct: 285 GYNEAPLVSIDFNHNPASSTFDATLTKVSGRLVKVSSWYD---NEWGFS 330


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,711,371
Number of Sequences: 62578
Number of extensions: 231203
Number of successful extensions: 463
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 460
Number of HSP's gapped (non-prelim): 7
length of query: 191
length of database: 14,973,337
effective HSP length: 93
effective length of query: 98
effective length of database: 9,153,583
effective search space: 897051134
effective search space used: 897051134
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)