BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029571
(191 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8H0Y1|OP24B_ARATH Outer envelope pore protein 24B, chloroplastic OS=Arabidopsis
thaliana GN=OEP24B PE=1 SV=1
Length = 213
Score = 287 bits (735), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 134/191 (70%), Positives = 163/191 (85%), Gaps = 3/191 (1%)
Query: 1 MKASLKGRYETDKDRGVAAATVAFNAGDVKLRASLTDATVVNGPSLNGLALAVEKPGFFI 60
MKAS+KG+Y+TDK G+ ++AFNAGD+KLRA++TDAT+V GP+L GLALAVEKPG FI
Sbjct: 3 MKASIKGKYDTDKTSGIG--SLAFNAGDIKLRATMTDATLVAGPTLTGLALAVEKPGSFI 60
Query: 61 VDYNVPKKDFRFQFMNSVRVADKPLNLTYIHGRGDNRTILEGTLVFDSANKVSANHVLGS 120
V+YNVPKKD RFQFMN+VR+A+KPLNLTYIH R DNRTI++G+LV DSANK+SANH++G+
Sbjct: 61 VEYNVPKKDVRFQFMNTVRIAEKPLNLTYIHSRADNRTIVDGSLVIDSANKLSANHMVGT 120
Query: 121 GNCKLKYTYVHGGLTTFEQWYDLAKNSWDFAVSRKVYGDDMFRASYQTSSKALALEWSRN 180
NCK+KYTY HGGL TFE YDLAKN+WDFAVSR+ Y D RA+YQTSSK L +EWSRN
Sbjct: 121 NNCKIKYTYAHGGLATFEPCYDLAKNTWDFAVSRRFYSGDNVRATYQTSSKLLGMEWSRN 180
Query: 181 SKINGDFKVTG 191
+K +G FKV
Sbjct: 181 NKASG-FKVCA 190
>sp|O49929|OEP24_PEA Outer envelope pore protein 24, chloroplastic OS=Pisum sativum
GN=OEP24 PE=1 SV=1
Length = 213
Score = 287 bits (734), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 141/191 (73%), Positives = 158/191 (82%), Gaps = 1/191 (0%)
Query: 1 MKASLKGRYETDKDRGVAAATVAFNAGDVKLRASLTDATVVNGPSLNGLALAVEKPGFFI 60
MKA+LKG+Y+ D + AATVAFNAGDVKLRAS+TDAT N PSL GL LAVEKPG F
Sbjct: 1 MKAALKGKYDLDHNSS-GAATVAFNAGDVKLRASITDATFKNSPSLTGLVLAVEKPGSFS 59
Query: 61 VDYNVPKKDFRFQFMNSVRVADKPLNLTYIHGRGDNRTILEGTLVFDSANKVSANHVLGS 120
VDYNVPKKDFRFQFMN+VRVA+KPLNL YIH +GDNRTIL+GTLV+D +NKVSAN+ + S
Sbjct: 60 VDYNVPKKDFRFQFMNTVRVAEKPLNLAYIHSKGDNRTILDGTLVWDPSNKVSANYAVES 119
Query: 121 GNCKLKYTYVHGGLTTFEQWYDLAKNSWDFAVSRKVYGDDMFRASYQTSSKALALEWSRN 180
GNCKLKY+Y H GLTT E YD+AKNSWDFAVS KVYGDD +ASYQTSSK L LEW+RN
Sbjct: 120 GNCKLKYSYNHKGLTTIEPTYDVAKNSWDFAVSGKVYGDDSLKASYQTSSKVLGLEWTRN 179
Query: 181 SKINGDFKVTG 191
SK G FKV
Sbjct: 180 SKQTGCFKVVA 190
>sp|Q1H5C9|OP24A_ARATH Outer envelope pore protein 24A, chloroplastic OS=Arabidopsis
thaliana GN=OEP24A PE=1 SV=1
Length = 213
Score = 279 bits (713), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 129/191 (67%), Positives = 157/191 (82%), Gaps = 2/191 (1%)
Query: 1 MKASLKGRYETDKDRGVAAATVAFNAGDVKLRASLTDATVVNGPSLNGLALAVEKPGFFI 60
MKAS KG+++ DK VA+ T FNAG+ KLRA++TDA+ V GPS NGL+LAVEKPGFFI
Sbjct: 2 MKASFKGKFDVDKSGSVASLT--FNAGNAKLRATMTDASFVAGPSFNGLSLAVEKPGFFI 59
Query: 61 VDYNVPKKDFRFQFMNSVRVADKPLNLTYIHGRGDNRTILEGTLVFDSANKVSANHVLGS 120
+DYNVPKKD RFQFMN++R+A+KPLNLTYIH RGDNRTI++G+ V D ANK+SAN+++G+
Sbjct: 60 IDYNVPKKDVRFQFMNTIRIAEKPLNLTYIHMRGDNRTIVDGSFVIDPANKLSANYMVGT 119
Query: 121 GNCKLKYTYVHGGLTTFEQWYDLAKNSWDFAVSRKVYGDDMFRASYQTSSKALALEWSRN 180
NCKLKYTYVHGG+ TFE YD+AKN WDFA+S K+YG D +A+YQTSSK L LEWS N
Sbjct: 120 KNCKLKYTYVHGGIATFEPCYDVAKNMWDFAISHKLYGGDNLKATYQTSSKMLGLEWSNN 179
Query: 181 SKINGDFKVTG 191
SK G FKV
Sbjct: 180 SKSTGSFKVCA 190
>sp|B8ANR3|OEP24_ORYSI Outer envelope pore protein 24, chloroplastic OS=Oryza sativa
subsp. indica GN=OEP24 PE=3 SV=1
Length = 224
Score = 195 bits (495), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 98/199 (49%), Positives = 128/199 (64%), Gaps = 10/199 (5%)
Query: 1 MKASLKGRYETDKDRGVAAATVAFNAGDVKLRASLTDATVVNGPSLNGLALAVEKPGFFI 60
MKA++KGRYE DK A +A D++ +AS TDA GPSL GL L +EKPG F+
Sbjct: 1 MKATVKGRYEGDKATAAATLAFTPSAADLRFKASATDAAFARGPSLEGLTLTLEKPGSFL 60
Query: 61 VDYNVPKKDFRFQFMNSVRVADKPLNLTYIH--------GRGDNRTILEGTLVFDSANKV 112
+D KD RFQFMNS + D+ ++LTY H + RT L+G+L FD ANK+
Sbjct: 61 LDLKPHSKDVRFQFMNSALLLDRRVSLTYTHSTTLSPGPAKPPARTALDGSLTFDPANKL 120
Query: 113 SANHVLGSGNCKLKYTYVHGG--LTTFEQWYDLAKNSWDFAVSRKVYGDDMFRASYQTSS 170
S +H LGS C++KY+Y HG LTT E +D A N+WDFAV+RK G D +A+YQ S+
Sbjct: 121 SLSHTLGSSGCRVKYSYAHGQDRLTTIEPCFDTANNAWDFAVTRKFQGGDAIKATYQAST 180
Query: 171 KALALEWSRNSKINGDFKV 189
K LAL+W+R+SKI FKV
Sbjct: 181 KLLALDWTRDSKIGASFKV 199
>sp|Q75IQ4|OEP24_ORYSJ Outer envelope pore protein 24, chloroplastic OS=Oryza sativa
subsp. japonica GN=OEP24 PE=2 SV=1
Length = 224
Score = 193 bits (491), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 98/199 (49%), Positives = 128/199 (64%), Gaps = 10/199 (5%)
Query: 1 MKASLKGRYETDKDRGVAAATVAFNAGDVKLRASLTDATVVNGPSLNGLALAVEKPGFFI 60
MKA++KGRYE DK A +A D++ +AS TDA GPSL GL L +EKPG F+
Sbjct: 1 MKATVKGRYEGDKATAAATLAFTPSAADLRFKASATDAAFARGPSLEGLILTLEKPGSFL 60
Query: 61 VDYNVPKKDFRFQFMNSVRVADKPLNLTYIH--------GRGDNRTILEGTLVFDSANKV 112
+D KD RFQFMNS + D+ ++LTY H + RT L+G+L FD ANK+
Sbjct: 61 LDLKPHSKDVRFQFMNSALLLDRRVSLTYTHSTTLSPGPAKLPARTALDGSLTFDPANKL 120
Query: 113 SANHVLGSGNCKLKYTYVHGG--LTTFEQWYDLAKNSWDFAVSRKVYGDDMFRASYQTSS 170
S +H LGS C++KY+Y HG LTT E +D A N+WDFAV+RK G D +A+YQ S+
Sbjct: 121 SLSHTLGSSGCRVKYSYAHGQDRLTTIEPCFDTANNAWDFAVTRKFQGGDAIKATYQAST 180
Query: 171 KALALEWSRNSKINGDFKV 189
K LAL+W+R+SKI FKV
Sbjct: 181 KLLALDWTRDSKIGASFKV 199
>sp|Q9SA76|PPR64_ARATH Pentatricopeptide repeat-containing protein At1g30610,
chloroplastic OS=Arabidopsis thaliana GN=EMB2279 PE=2
SV=1
Length = 1006
Score = 34.3 bits (77), Expect = 0.51, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 17/93 (18%)
Query: 71 RFQFMNSVRVADKPLNLTY---IHGRGDNRTILEGTLVFDSANKVSANHVLGSGNCKLKY 127
+FQ RVA+KPL +TY I D+ I +FD KV + +++ + N LK
Sbjct: 745 QFQLKKICRVANKPLVVTYTGLIQACVDSGNIKNAAYIFDQMKKVCSPNLV-TCNIMLK- 802
Query: 128 TYVHGGLTTFEQWYDL----------AKNSWDF 150
Y+ GGL FE+ +L KNS DF
Sbjct: 803 AYLQGGL--FEEARELFQKMSEDGNHIKNSSDF 833
>sp|P22630|AMY1_AERHY Alpha-amylase OS=Aeromonas hydrophila PE=3 SV=1
Length = 464
Score = 33.9 bits (76), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 61/159 (38%), Gaps = 42/159 (26%)
Query: 26 AGDVKLRASLTDATVVNG-------PSLNGLALAVEKPGFFIVDYNVPKKD-FRFQFMNS 77
A D L ASL A G P G AL + F + +++P D FR+Q +N
Sbjct: 269 AYDFPLFASLRGALGYGGSMNQLADPGAYGQALPGNRAVTFAITHDIPTNDGFRYQILNQ 328
Query: 78 VRVADKPLNLTYIHGRGDN------------------------RTILEGTLVFDSANKVS 113
D+ L Y+ GR R+ L+G + F +A +
Sbjct: 329 T---DEKLAYAYLLGRDGGSPLVYSDHGETQDKDGLRWQDYYLRSDLKGMIRFHNAVQGQ 385
Query: 114 ANHVLGSGNCKLKYTYVHGGL-----TTFEQ--WYDLAK 145
++GSG+C + + GL +EQ W D AK
Sbjct: 386 PMQLIGSGDCFVLFKRGKQGLVGVNKCDYEQEYWLDTAK 424
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,801,623
Number of Sequences: 539616
Number of extensions: 2739352
Number of successful extensions: 4963
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4949
Number of HSP's gapped (non-prelim): 10
length of query: 191
length of database: 191,569,459
effective HSP length: 111
effective length of query: 80
effective length of database: 131,672,083
effective search space: 10533766640
effective search space used: 10533766640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)