Query 029571
Match_columns 191
No_of_seqs 28 out of 30
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 15:03:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029571.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029571hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02861 E_set_proteins_like E 81.1 10 0.00022 26.7 6.8 68 26-125 13-81 (82)
2 TIGR01981 sufD FeS assembly pr 80.3 8.1 0.00018 34.8 7.4 131 37-180 44-211 (366)
3 PF00167 FGF: Fibroblast growt 58.6 16 0.00035 27.6 3.8 50 103-155 54-103 (122)
4 TIGR03503 conserved hypothetic 55.2 1E+02 0.0022 29.1 9.2 41 53-93 180-220 (374)
5 cd00342 gram_neg_porins Porins 48.4 1.6E+02 0.0034 24.4 11.8 55 112-168 205-259 (329)
6 cd04885 ACT_ThrD-I Tandem C-te 46.8 8.6 0.00019 26.1 0.6 28 54-96 7-34 (68)
7 PF07691 PA14: PA14 domain; I 46.0 99 0.0021 22.7 6.2 20 92-111 68-87 (145)
8 PF10162 G8: G8 domain; Inter 40.8 49 0.0011 25.5 4.1 29 97-125 34-64 (125)
9 PF01459 Porin_3: Eukaryotic p 40.5 2E+02 0.0044 23.5 19.0 109 59-171 109-242 (273)
10 smart00612 Kelch Kelch domain. 40.1 29 0.00063 20.4 2.2 16 135-151 15-30 (47)
11 PF14321 DUF4382: Domain of un 38.2 88 0.0019 24.3 5.1 24 18-41 59-83 (139)
12 smart00089 PKD Repeats in poly 37.6 1.2E+02 0.0026 20.4 5.1 27 40-66 36-64 (79)
13 KOG3126 Porin/voltage-dependen 37.3 1.6E+02 0.0034 26.9 7.2 90 82-182 111-214 (281)
14 PF03100 CcmE: CcmE; InterPro 36.6 1.9E+02 0.0041 22.7 6.8 64 54-127 59-127 (131)
15 PF01331 mRNA_cap_enzyme: mRNA 35.0 55 0.0012 26.3 3.6 16 95-110 67-82 (192)
16 PF13609 Porin_4: Gram-negativ 33.6 2.6E+02 0.0057 22.7 11.3 120 44-178 150-292 (311)
17 PF08768 DUF1794: Domain of un 33.1 2.5E+02 0.0055 22.4 9.0 44 84-127 42-91 (154)
18 PF07443 HARP: HepA-related pr 33.0 15 0.00032 26.1 0.1 14 140-153 22-35 (55)
19 smart00159 PTX Pentraxin / C-r 28.0 3.4E+02 0.0074 22.3 8.0 72 43-120 56-128 (206)
20 PF14352 DUF4402: Domain of un 27.8 2.7E+02 0.0059 21.1 8.2 60 56-117 46-121 (130)
21 PRK13285 flagellar assembly pr 27.7 1.6E+02 0.0034 24.0 5.2 71 48-128 55-137 (148)
22 KOG1719 Dual specificity phosp 27.4 7 0.00015 33.8 -2.8 55 27-105 75-132 (183)
23 PF05270 AbfB: Alpha-L-arabino 26.9 50 0.0011 26.9 2.1 28 35-62 36-67 (142)
24 PF07532 Big_4: Bacterial Ig-l 26.4 95 0.0021 20.8 3.1 33 159-191 17-54 (59)
25 PF07608 DUF1571: Protein of u 24.9 4.1E+02 0.0089 23.4 7.5 63 69-131 119-191 (213)
26 TIGR03016 pepcterm_hypo_1 unch 23.0 6.1E+02 0.013 23.5 8.6 74 80-155 343-430 (431)
27 PF03548 LolA: Outer membrane 22.3 1E+02 0.0022 22.9 2.9 19 50-68 28-46 (165)
28 cd07825 SRPBCC_7 Ligand-bindin 21.2 3.3E+02 0.0071 19.7 7.4 17 121-137 102-118 (144)
29 PRK07093 para-aminobenzoate sy 20.8 57 0.0012 29.8 1.5 29 53-81 16-55 (323)
30 PF11854 DUF3374: Protein of u 20.7 7.6E+02 0.016 24.7 9.2 105 61-171 169-308 (637)
31 smart00700 JHBP Juvenile hormo 20.5 3.9E+02 0.0085 21.9 6.3 77 20-103 48-129 (225)
32 PF06009 Laminin_II: Laminin D 20.3 50 0.0011 26.0 0.9 22 105-127 102-123 (138)
33 PRK00031 lolA lipoprotein chap 20.1 1E+02 0.0022 24.4 2.7 20 50-69 53-72 (195)
No 1
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=81.10 E-value=10 Score=26.75 Aligned_cols=68 Identities=19% Similarity=0.422 Sum_probs=44.2
Q ss_pred cCceEEeeeeeceeeecCCCccceEEEeecCceEEEeecCCCCCeeEEeeeeeeecceeeeeEEeeecCCceeEEeeeEE
Q 029571 26 AGDVKLRASLTDATVVNGPSLNGLALAVEKPGFFIVDYNVPKKDFRFQFMNSVRVADKPLNLTYIHGRGDNRTILEGTLV 105 (191)
Q Consensus 26 aGDlkLrAs~TDatfv~GpSL~GlsL~vEKPGsF~iDy~vp~~d~RFQFmn~~~v~~K~lnlTY~H~~~~nrT~lDgtl~ 105 (191)
|..|.|..+..+-. .+.|.-++.|.|.+...+|.-.-+|+| ++||...
T Consensus 13 a~~V~v~G~fn~W~--------~~~m~~~~~G~w~~~~~l~~G~y~Ykf------------------------~vdg~~~ 60 (82)
T cd02861 13 ADSVYLAGSFNNWN--------AIPMEREGDGLWVVTVELRPGRYEYKF------------------------VVDGEWV 60 (82)
T ss_pred CCEEEEEeECCCCC--------cccCEECCCCcEEEEEeCCCCcEEEEE------------------------EECCEEe
Confidence 45566666655432 233443445889988888887778888 4566655
Q ss_pred -eecCCceeeeEEecCCceeE
Q 029571 106 -FDSANKVSANHVLGSGNCKL 125 (191)
Q Consensus 106 -~D~aNKls~~y~f~s~~ckl 125 (191)
.||.|.-...=.|+..||-|
T Consensus 61 ~~DP~~~~~~~~~~g~~n~v~ 81 (82)
T cd02861 61 IVDPNAAAYVDDGFGGKNAVF 81 (82)
T ss_pred eCCCCCCceecCCCCccceEc
Confidence 78888776666666666543
No 2
>TIGR01981 sufD FeS assembly protein SufD, group 1. This protein, SufD, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. SufB and SufD are homologous. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component.
Probab=80.33 E-value=8.1 Score=34.76 Aligned_cols=131 Identities=20% Similarity=0.262 Sum_probs=75.8
Q ss_pred ceeeecCCCccceEEEeecCceEEEee----cCCCCCeeEEeeeeeee-------------cceeeeeEEeeecCCc---
Q 029571 37 DATVVNGPSLNGLALAVEKPGFFIVDY----NVPKKDFRFQFMNSVRV-------------ADKPLNLTYIHGRGDN--- 96 (191)
Q Consensus 37 Datfv~GpSL~GlsL~vEKPGsF~iDy----~vp~~d~RFQFmn~~~v-------------~~K~lnlTY~H~~~~n--- 96 (191)
...|++|..+..|+-.+++|.-..++| .++.++-+|..+|.+.. .++|+.+.|+...+.+
T Consensus 44 ~lv~~~G~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~aln~a~~~~G~~i~v~~~~~~~~Pi~i~~~~~~~~~~~~ 123 (366)
T TIGR01981 44 RLVFVDGVIVPDLSDALPLHPELLEDLLDALAVLSDEDRFLALNAALFNDGTVLYVPKGVEVEEPIEIKFIGVGGEKNFV 123 (366)
T ss_pred eEEEECCEEecChhhhhccCcceEEeehhcccCcCCccHHHHHHHHHhCCeEEEEECCCCCcCCCEEEEEEEcCCCccce
Confidence 577999999888888888998888888 45555666766665532 5699999998864322
Q ss_pred -------------eeEEeeeEEeecCCc--ee--eeEEecCCceeEEEEEEeCCeeeeeeeeccccceeeeEEEeeecCC
Q 029571 97 -------------RTILEGTLVFDSANK--VS--ANHVLGSGNCKLKYTYVHGGLTTFEQWYDLAKNSWDFAVSRKVYGD 159 (191)
Q Consensus 97 -------------rT~lDgtl~~D~aNK--ls--~~y~f~s~~cklKYsYvH~g~tT~EP~yD~~~nsWdfavsrkv~g~ 159 (191)
.|+++.-...++.+. ++ ....+-..|-+|+|..+|. .+.+++.|+-.+-..+.
T Consensus 124 ~~~~~i~v~~~s~~~iie~~~~~~~~~~~~~~~~~~ei~~~~~A~l~~~~iq~----------~~~~~~~~~~~~~~~~~ 193 (366)
T TIGR01981 124 HPRLLIIVEKGSKITVIERFETISLNSGKAFTNSVVEITVGANASVIFVKVQF----------FSKNSTHFSNHRAFIGR 193 (366)
T ss_pred eeEEEEEECCCCEEEEEEEecCCCCCCcccEEEEEEEEEECCCCEEEEEEEEc----------CCCCcEEEEEeEEEEcC
Confidence 222222222222221 11 2222333556666666654 35678888755544444
Q ss_pred CeeEEEEeecceeEEEEEecC
Q 029571 160 DMFRASYQTSSKALALEWSRN 180 (191)
Q Consensus 160 d~~katYq~s~k~lGleWsR~ 180 (191)
|. .|+...=.+|=.++|.
T Consensus 194 ~a---~~~~~~~~~gg~~~r~ 211 (366)
T TIGR01981 194 DA---TLRLAVVNLGGKLSRH 211 (366)
T ss_pred CC---EEEEEEEEcCCccEEE
Confidence 43 2222333455555554
No 3
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=58.64 E-value=16 Score=27.60 Aligned_cols=50 Identities=16% Similarity=0.415 Sum_probs=44.5
Q ss_pred eEEeecCCceeeeEEecCCceeEEEEEEeCCeeeeeeeeccccceeeeEEEee
Q 029571 103 TLVFDSANKVSANHVLGSGNCKLKYTYVHGGLTTFEQWYDLAKNSWDFAVSRK 155 (191)
Q Consensus 103 tl~~D~aNKls~~y~f~s~~cklKYsYvH~g~tT~EP~yD~~~nsWdfavsrk 155 (191)
=|.+|...+|.++-.+.. .|.++-.+..++-.+||-..+ .+.|-+|+.++
T Consensus 54 YLcmn~~G~ly~~~~~~~-~C~F~e~~~~n~y~~~~s~~~--~~~~yla~~~~ 103 (122)
T PF00167_consen 54 YLCMNKCGRLYGSKNFNK-DCVFREELLENGYNTYESAKY--GRGWYLAFNRR 103 (122)
T ss_dssp EEEEBTTSBEEEESSBTG-GGEEEEEEETTSEEEEEESTT--GTTEBCEBCTT
T ss_pred EEEECCCCeEccccccCC-CceEEEEEccCCEEEEEeccC--CccEEEEECCC
Confidence 478999999999988886 999999999999999998877 78899998774
No 4
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=55.17 E-value=1e+02 Score=29.12 Aligned_cols=41 Identities=22% Similarity=0.243 Sum_probs=36.8
Q ss_pred eecCceEEEeecCCCCCeeEEeeeeeeecceeeeeEEeeec
Q 029571 53 VEKPGFFIVDYNVPKKDFRFQFMNSVRVADKPLNLTYIHGR 93 (191)
Q Consensus 53 vEKPGsF~iDy~vp~~d~RFQFmn~~~v~~K~lnlTY~H~~ 93 (191)
..+||-|.+.+-+-++-+.=||-..+.|-..|++.+++-++
T Consensus 180 ~~~~G~Y~~~v~~~n~vF~R~~~q~v~V~p~Pi~~~~~~~~ 220 (374)
T TIGR03503 180 DVAPGEYRPTYQSRNPVFLREVEQPVLVYPLPVSYTVIQSE 220 (374)
T ss_pred cCCCceEEEEEEEcCceEEEEEEEeEEEECCCeeEEEEccC
Confidence 35799999999999999988888899999999999999875
No 5
>cd00342 gram_neg_porins Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.
Probab=48.43 E-value=1.6e+02 Score=24.44 Aligned_cols=55 Identities=15% Similarity=0.062 Sum_probs=31.2
Q ss_pred eeeeEEecCCceeEEEEEEeCCeeeeeeeeccccceeeeEEEeeecCCCeeEEEEee
Q 029571 112 VSANHVLGSGNCKLKYTYVHGGLTTFEQWYDLAKNSWDFAVSRKVYGDDMFRASYQT 168 (191)
Q Consensus 112 ls~~y~f~s~~cklKYsYvH~g~tT~EP~yD~~~nsWdfavsrkv~g~d~~katYq~ 168 (191)
+.+.|.++ .-.|.=.|.|..........+-..+.|.++++-++...=.+.+.|..
T Consensus 205 ~ga~Y~~~--~~~v~a~y~~~~~~~~~~~~~~~~~~~~lga~Y~~~~~~~~~~~y~~ 259 (329)
T cd00342 205 AGASYDFG--GLKLGAGYTNTRNDNGGGGGSAKFNGYELGATYQLTPALRLGAAYYY 259 (329)
T ss_pred EEEEEEEc--cEEEEEEEEEEEccCCCCCCceEEEEEEEeEEEEcCCceEEEEEEEE
Confidence 56677765 35555555554221111122334567888888877766667777754
No 6
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.79 E-value=8.6 Score=26.14 Aligned_cols=28 Identities=32% Similarity=0.606 Sum_probs=17.5
Q ss_pred ecCceEEEeecCCCCCeeEEeeeeeeecceeeeeEEeeecCCc
Q 029571 54 EKPGFFIVDYNVPKKDFRFQFMNSVRVADKPLNLTYIHGRGDN 96 (191)
Q Consensus 54 EKPGsF~iDy~vp~~d~RFQFmn~~~v~~K~lnlTY~H~~~~n 96 (191)
||||+|. +|++ .|.+ ..|++.+|.+..+
T Consensus 7 dkPG~l~------------~~~~--~i~~-~~nI~~~~~~~~~ 34 (68)
T cd04885 7 ERPGALK------------KFLE--LLGP-PRNITEFHYRNQG 34 (68)
T ss_pred CCCCHHH------------HHHH--HhCC-CCcEEEEEEEcCC
Confidence 7888873 3444 3344 7888887765433
No 7
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=45.98 E-value=99 Score=22.67 Aligned_cols=20 Identities=25% Similarity=0.425 Sum_probs=14.5
Q ss_pred ecCCceeEEeeeEEeecCCc
Q 029571 92 GRGDNRTILEGTLVFDSANK 111 (191)
Q Consensus 92 ~~~~nrT~lDgtl~~D~aNK 111 (191)
+.+..|..|||.++||...+
T Consensus 68 ~~d~~~l~idg~~vid~~~~ 87 (145)
T PF07691_consen 68 SDDGARLWIDGKLVIDNWGN 87 (145)
T ss_dssp ESSEEEEEETTEEEEECSCT
T ss_pred ecccEEEEECCEEEEcCCcc
Confidence 44666777888888887743
No 8
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=40.81 E-value=49 Score=25.54 Aligned_cols=29 Identities=34% Similarity=0.556 Sum_probs=20.4
Q ss_pred eeEEeeeEEeec--CCceeeeEEecCCceeE
Q 029571 97 RTILEGTLVFDS--ANKVSANHVLGSGNCKL 125 (191)
Q Consensus 97 rT~lDgtl~~D~--aNKls~~y~f~s~~ckl 125 (191)
..+++|+|+||. ..+|.+.|.+=.++++|
T Consensus 34 ~l~I~G~L~f~~~~~~~L~a~~I~V~~Gg~l 64 (125)
T PF10162_consen 34 SLIIGGTLIFDDDRDITLRAEYILVEGGGRL 64 (125)
T ss_pred EEEEEEEEEEccCCCCEEEEEEEEECCCCeE
Confidence 344699999998 55778887776554444
No 9
>PF01459 Porin_3: Eukaryotic porin; InterPro: IPR001925 The major protein of the outer mitochondrial membrane of eukaryotes is a porin that forms a voltage-dependent anion-selective channel (VDAC) that behaves as a general diffusion pore for small hydrophilic molecules [, , , ]. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. This protein contains about 280 amino acids and its sequence is composed of between 12 to 16 beta-strands that span the mitochondrial outer membrane. Yeast contains two members of this family (genes POR1 and POR2); vertebrates have at least three members (genes VDAC1, VDAC2 and VDAC3) [].; GO: 0008308 voltage-gated anion channel activity, 0006820 anion transport, 0044070 regulation of anion transport, 0055085 transmembrane transport, 0005741 mitochondrial outer membrane; PDB: 3EMN_X 2K4T_A 2JK4_A.
Probab=40.50 E-value=2e+02 Score=23.46 Aligned_cols=109 Identities=16% Similarity=0.176 Sum_probs=65.0
Q ss_pred EEEeecCCCCCeeEEeeeeeeecceeeeeEEeeecCCceeEEeeeEEeecCCc-ee-----eeEEec-------------
Q 029571 59 FIVDYNVPKKDFRFQFMNSVRVADKPLNLTYIHGRGDNRTILEGTLVFDSANK-VS-----ANHVLG------------- 119 (191)
Q Consensus 59 F~iDy~vp~~d~RFQFmn~~~v~~K~lnlTY~H~~~~nrT~lDgtl~~D~aNK-ls-----~~y~f~------------- 119 (191)
+-+||.-+.--..++..+ .....++++|..+.+ .+-+|=+.+++|.+++ ++ ++|.-.
T Consensus 109 l~~~y~~~~~~~~~~~~~---~~~~~~~~s~~~~v~-~~~~lG~e~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~ 184 (273)
T PF01459_consen 109 LEADYKGDDFNATFKVDN---DNNPIFNASYVQSVT-PNLALGAEATYDLSSGKSSKYNAGLSYAARYTHPDYTASATLS 184 (273)
T ss_dssp EEEEEEETTEEEEEEEEE---STS-EEEEEEEEEET--TEEEEEEEEEETTTTCEEEEEEEEEEEET----TEEEEEEE-
T ss_pred EEEEEecCCEEEEEEEcc---cCCCcEEEEEEEecc-ccEEEEEEEEEecccCCcCcceEEEEEeccccceeEEEEEEEc
Confidence 345555554444444444 226678889988755 4678889999998874 43 444444
Q ss_pred CCceeEEEEEEeCC---e-eeeeeeeccccceee--eEEEeeecCCCeeEEEEeecce
Q 029571 120 SGNCKLKYTYVHGG---L-TTFEQWYDLAKNSWD--FAVSRKVYGDDMFRASYQTSSK 171 (191)
Q Consensus 120 s~~cklKYsYvH~g---~-tT~EP~yD~~~nsWd--favsrkv~g~d~~katYq~s~k 171 (191)
.+.-.|.-+|.|.- + .-.|=.++..++.+. +++..++.....+|+..++..+
T Consensus 185 ~~~~~l~~sy~~k~~~~~~~g~e~~~~~~~~~~~~~vG~~~~l~~~~~vk~kvds~g~ 242 (273)
T PF01459_consen 185 NNFGTLTASYFQKVNDKLQLGAELTYNLSSRESTFTVGYQYKLDDSSTVKAKVDSNGR 242 (273)
T ss_dssp ETTTEEEEEEEEESSTTEEEEEEEEEETTCCEEEEEEEEEEEECTTEEEEEEEETTSE
T ss_pred CCCCEEEEEEEEEeccceeeeeeeeecccCCCceEEEEEEEEcCcccEEEEEEcCCCE
Confidence 23445566777761 1 334555666555444 4455556666688888877763
No 10
>smart00612 Kelch Kelch domain.
Probab=40.14 E-value=29 Score=20.37 Aligned_cols=16 Identities=31% Similarity=0.545 Sum_probs=11.8
Q ss_pred eeeeeeeccccceeeeE
Q 029571 135 TTFEQWYDLAKNSWDFA 151 (191)
Q Consensus 135 tT~EP~yD~~~nsWdfa 151 (191)
.++| +||..++.|...
T Consensus 15 ~~v~-~yd~~~~~W~~~ 30 (47)
T smart00612 15 KSVE-VYDPETNKWTPL 30 (47)
T ss_pred eeEE-EECCCCCeEccC
Confidence 3444 799999999754
No 11
>PF14321 DUF4382: Domain of unknown function (DUF4382)
Probab=38.25 E-value=88 Score=24.25 Aligned_cols=24 Identities=38% Similarity=0.477 Sum_probs=18.4
Q ss_pred eEEEEEEecCce-EEeeeeeceeee
Q 029571 18 AAATVAFNAGDV-KLRASLTDATVV 41 (191)
Q Consensus 18 a~atv~~~aGDl-kLrAs~TDatfv 41 (191)
-.+...+++|+. ++|-.+.|++.+
T Consensus 59 ~l~~~~lpaG~Y~~irl~l~~~~v~ 83 (139)
T PF14321_consen 59 LLADAELPAGTYNQIRLVLDDANVV 83 (139)
T ss_pred EEeccccCCCcEEEEEEEEeCCeEE
Confidence 367777889998 788888887744
No 12
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=37.55 E-value=1.2e+02 Score=20.38 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=16.1
Q ss_pred eecCCCccc--eEEEeecCceEEEeecCC
Q 029571 40 VVNGPSLNG--LALAVEKPGFFIVDYNVP 66 (191)
Q Consensus 40 fv~GpSL~G--lsL~vEKPGsF~iDy~vp 66 (191)
|.+|..+.+ .+...++||.|.|-..+-
T Consensus 36 fgdg~~~~~~~~~~~y~~~G~y~v~l~v~ 64 (79)
T smart00089 36 FGDGTSSTGPTVTHTYTKPGTYTVTLTVT 64 (79)
T ss_pred eCCCCccCCCCEEEEeCCCcEEEEEEEEE
Confidence 334444433 455668999988766553
No 13
>KOG3126 consensus Porin/voltage-dependent anion-selective channel protein [Inorganic ion transport and metabolism]
Probab=37.32 E-value=1.6e+02 Score=26.88 Aligned_cols=90 Identities=20% Similarity=0.343 Sum_probs=55.0
Q ss_pred ceeeeeEEeeecCCc--------eeEEeeeEEeecCCce-eeeEEecCCceeEEEEEEeCCeeeeeeeeccccceeeeEE
Q 029571 82 DKPLNLTYIHGRGDN--------RTILEGTLVFDSANKV-SANHVLGSGNCKLKYTYVHGGLTTFEQWYDLAKNSWDFAV 152 (191)
Q Consensus 82 ~K~lnlTY~H~~~~n--------rT~lDgtl~~D~aNKl-s~~y~f~s~~cklKYsYvH~g~tT~EP~yD~~~nsWdfav 152 (191)
..+|++.|.|.---= --++.|++++...|=+ .+.+.|++.+.+ ++.. ..-++=+.||+.+
T Consensus 111 s~Klk~~y~~~~~~~~~~~~~~~~P~i~~s~v~g~~g~l~G~~~~fDt~~~~---------~t~~--n~~lgy~~~d~~l 179 (281)
T KOG3126|consen 111 SGKLKLSYARDHFNLGADDFLTANPLILGSLVLGHEGWLLGYETTFDTASGK---------LTKY--NAALGYTTEDFTL 179 (281)
T ss_pred ceeeecccccccceeeeccccccCCeEEEEEEecccceEEEEeEEEeccCCc---------EeeE--EEEEEeecCCcEE
Confidence 456777887753211 2245567777766632 122333333333 3333 3334557899999
Q ss_pred Eeeec-CCCeeEEEEeeccee----EEEEEecCCC
Q 029571 153 SRKVY-GDDMFRASYQTSSKA----LALEWSRNSK 182 (191)
Q Consensus 153 srkv~-g~d~~katYq~s~k~----lGleWsR~sk 182 (191)
...+- +.+..+..||.-..- ..+||++.+.
T Consensus 180 ~~~~nn~~~~~~s~yq~v~~~~~~~~~~~~~~~~~ 214 (281)
T KOG3126|consen 180 HLNLNNGTEFLASIYQRVNEKLETGANAEWIAGSS 214 (281)
T ss_pred EEEecccchhhhhhhhhhcchheeeeeEEEeecCC
Confidence 99885 778888889876543 6789999886
No 14
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=36.58 E-value=1.9e+02 Score=22.67 Aligned_cols=64 Identities=23% Similarity=0.420 Sum_probs=40.5
Q ss_pred ecCceEEEeecCCCCCeeEEeeeeeeecceeeeeEEeeecCCc-----eeEEeeeEEeecCCceeeeEEecCCceeEEE
Q 029571 54 EKPGFFIVDYNVPKKDFRFQFMNSVRVADKPLNLTYIHGRGDN-----RTILEGTLVFDSANKVSANHVLGSGNCKLKY 127 (191)
Q Consensus 54 EKPGsF~iDy~vp~~d~RFQFmn~~~v~~K~lnlTY~H~~~~n-----rT~lDgtl~~D~aNKls~~y~f~s~~cklKY 127 (191)
=+||| |.|+.....++|+-... ++.+.+.|.=..+++ .-|++|.+ +..+.+.|.=.+. +|-=||
T Consensus 59 V~~gS--v~~~~~~~~~~F~i~D~----~~~i~V~Y~G~~Pd~F~eg~~VVv~G~~--~~~g~F~A~~lL~--KcpskY 127 (131)
T PF03100_consen 59 VVEGS--VEYDPDGNTLTFTITDG----GKEIPVVYTGPLPDLFREGQGVVVEGRL--GEDGVFEATELLA--KCPSKY 127 (131)
T ss_dssp EECTT--EEE-TTSSEEEEEEE-S----S-EEEEEEES--CTT--TTSEEEEEEEE--CCTSEEEEEEEEE--TS----
T ss_pred EccCC--EEEcCCCCEEEEEEEEC----CcEEEEEECCCCCccccCCCeEEEEEEE--CCCCEEEEEEEEe--CCCCCC
Confidence 35787 78887666677766544 578999999876543 56889987 7777888876665 666555
No 15
>PF01331 mRNA_cap_enzyme: mRNA capping enzyme, catalytic domain; InterPro: IPR001339 The mRNA capping enzyme in yeasts is composed of two separate chains, alpha a mRNA guanyltransferase and beta an RNA 5'-triphosphate. X-ray crystallography reveals a large conformational change during guanyl transfer by mRNA capping enzymes []. Binding of the enzyme to nucleotides is specific to the GMP moiety of GTP. The viral mRNA capping enzyme is a monomer that transfers a GMP cap onto the end of mRNA that terminates with a 5'-diphosphate tail.; GO: 0004484 mRNA guanylyltransferase activity, 0006370 mRNA capping, 0006397 mRNA processing; PDB: 3RTX_A 3KYH_D 3S24_G 1CKN_B 1CKO_A 1CKM_B 1P16_B.
Probab=35.04 E-value=55 Score=26.32 Aligned_cols=16 Identities=38% Similarity=0.673 Sum_probs=13.2
Q ss_pred CceeEEeeeEEeecCC
Q 029571 95 DNRTILEGTLVFDSAN 110 (191)
Q Consensus 95 ~nrT~lDgtl~~D~aN 110 (191)
-.-|+|||.||+|-.+
T Consensus 67 ~~~TLLDGElV~d~~~ 82 (192)
T PF01331_consen 67 HQDTLLDGELVLDKDP 82 (192)
T ss_dssp GCSEEEEEEEEEEECT
T ss_pred cCCEEEEEEEEcccCC
Confidence 3579999999999654
No 16
>PF13609 Porin_4: Gram-negative porin; PDB: 2FGR_A 2FGQ_X 1E54_A 2POR_A 3POR_A 1PRN_A 6PRN_A 8PRN_A 1H6S_1 3PRN_A ....
Probab=33.56 E-value=2.6e+02 Score=22.75 Aligned_cols=120 Identities=14% Similarity=0.111 Sum_probs=0.0
Q ss_pred CCccceEEEeecCceEEEeecCCC------------CCeeEEeeeeeeecceeeeeEEeeecCCceeEEeeeEEeecCCc
Q 029571 44 PSLNGLALAVEKPGFFIVDYNVPK------------KDFRFQFMNSVRVADKPLNLTYIHGRGDNRTILEGTLVFDSANK 111 (191)
Q Consensus 44 pSL~GlsL~vEKPGsF~iDy~vp~------------~d~RFQFmn~~~v~~K~lnlTY~H~~~~nrT~lDgtl~~D~aNK 111 (191)
|.+.|++++ .++.++-+-.. .+..|+-+-+-.+.+.++.+...+.+.++..- =...-.
T Consensus 150 ~~~~g~~~~----~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~y~~~~~~~~------~~~~~~ 219 (311)
T PF13609_consen 150 PDFGGFSFG----ASYGPGEDDDNNGIGGSVAGDSDDDDVYGAGASYSFGGFGLTVAAGYSSADDNGG------DNDAWG 219 (311)
T ss_dssp EEETTEEEE----EEEEEETTCCC-TTBSS-TCCGCTTEEEEEEEEEEET-SSEEEEEEEEEEECCET------CEEEEE
T ss_pred cccCceEEE----EEEeccCCccccccccccccccccccceEEEEEEEcCCcceEEEeeeecccccch------heeeEE
Q ss_pred eeeeEEecCCceeEEEEEEeCCeeeeeeeeccccceeeeEEEeeecCCCeeEEEEeecce-----------eEEEEEe
Q 029571 112 VSANHVLGSGNCKLKYTYVHGGLTTFEQWYDLAKNSWDFAVSRKVYGDDMFRASYQTSSK-----------ALALEWS 178 (191)
Q Consensus 112 ls~~y~f~s~~cklKYsYvH~g~tT~EP~yD~~~nsWdfavsrkv~g~d~~katYq~s~k-----------~lGleWs 178 (191)
++++|.+ +.-.|.-.|.|-......+. ...+.|.+.++-.+ +.-.+.+.|..... .||++|.
T Consensus 220 ~ga~y~~--~~~~l~a~y~~~~~~~~~~~--~~~~~~~~~~~Y~~-~~~~~~~~y~~~~~~~~~~~~~~~~~~g~~Y~ 292 (311)
T PF13609_consen 220 VGASYNF--GGFTLGAEYGQADNDGSGGD--SDQDAYYVGAAYTF-GKWTLYAGYGYSDSADGSDDDATSYAVGVDYD 292 (311)
T ss_dssp EEEEEEC--SSEEEEEEEEEEEEECCCCC--EEEEEEEEEEEEEE-TTEEEEEEEEEEEE-GCCTEEEEEEEEEEEEE
T ss_pred eeEEEEE--CcEEEEEEEEEEEecCcccc--ccceEEEEEEEEEe-CCEEEEEEEEEEEccCCCCCCeEEEEEEEEEE
No 17
>PF08768 DUF1794: Domain of unknown function (DUF1794); InterPro: IPR014878 This protein forms a beta barrel structure. It is sometimes found on proteins containing a THAP (IPR006612 from INTERPRO) domain. ; PDB: 2FR2_A 2A13_A 2Q4N_A 3EMM_A 3IA8_B 2FWV_A.
Probab=33.14 E-value=2.5e+02 Score=22.42 Aligned_cols=44 Identities=23% Similarity=0.139 Sum_probs=24.6
Q ss_pred eeeeEEeeecCCcee--EEe---eeEEeecCCc-eeeeEEecCCceeEEE
Q 029571 84 PLNLTYIHGRGDNRT--ILE---GTLVFDSANK-VSANHVLGSGNCKLKY 127 (191)
Q Consensus 84 ~lnlTY~H~~~~nrT--~lD---gtl~~D~aNK-ls~~y~f~s~~cklKY 127 (191)
-|+.++.-+.-++.. .+- |=+.+||+++ |.+...-+.|-|-|-+
T Consensus 42 ~L~y~~~~~~~~~g~~~p~h~E~Gf~~~~~~~~~v~~~~~~p~G~~~l~~ 91 (154)
T PF08768_consen 42 FLNYTSRTWNVDDGSVRPFHDETGFWRVDPATNEVELSLAHPRGVTELEE 91 (154)
T ss_dssp EEEEEEEEEETTTS-EEEEEEEEEEEEESTTSEEEEEEEEETTTEEEEEE
T ss_pred eEEEEEEEEECCCCCCCccccceeEEEEeCCCCEEEEEEEeCCceEEEEE
Confidence 366666554443322 333 8888999887 5555555544444443
No 18
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=33.00 E-value=15 Score=26.14 Aligned_cols=14 Identities=29% Similarity=0.790 Sum_probs=12.4
Q ss_pred eeccccceeeeEEE
Q 029571 140 WYDLAKNSWDFAVS 153 (191)
Q Consensus 140 ~yD~~~nsWdfavs 153 (191)
.||..++.|+|.++
T Consensus 22 ~YD~~Tr~W~F~L~ 35 (55)
T PF07443_consen 22 NYDPKTRKWNFSLE 35 (55)
T ss_pred ccCccceeeeeeHH
Confidence 69999999999864
No 19
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=28.03 E-value=3.4e+02 Score=22.27 Aligned_cols=72 Identities=15% Similarity=0.115 Sum_probs=45.6
Q ss_pred CCCccceEEEeecCceEEEeecCCCCCeeEEeeeeeeecc-eeeeeEEeeecCCceeEEeeeEEeecCCceeeeEEecC
Q 029571 43 GPSLNGLALAVEKPGFFIVDYNVPKKDFRFQFMNSVRVAD-KPLNLTYIHGRGDNRTILEGTLVFDSANKVSANHVLGS 120 (191)
Q Consensus 43 GpSL~GlsL~vEKPGsF~iDy~vp~~d~RFQFmn~~~v~~-K~lnlTY~H~~~~nrT~lDgtl~~D~aNKls~~y~f~s 120 (191)
+..-+.|-+..+++|.|.|-.+ .+.+.+. ....-.+ .-|-+||....+.-+.-+||.++ .+.-++..+.+..
T Consensus 56 ~~~~ne~~~~~~~~~~~~l~i~--g~~~~~~--~~~~~g~W~hvc~tw~~~~g~~~lyvnG~~~--~~~~~~~g~~i~~ 128 (206)
T smart00159 56 KGQDNELLLYKEKQGEYSLYIG--GKKVQFP--VPESDGKWHHICTTWESSSGIAELWVDGKPG--VRKGLAKGYTVKP 128 (206)
T ss_pred CCCCCeEEEEEcCCcEEEEEEc--CeEEEec--ccccCCceEEEEEEEECCCCcEEEEECCEEc--ccccccCCcEECC
Confidence 3334667777788888776543 3333222 1222111 45778888888999999999997 4555666676664
No 20
>PF14352 DUF4402: Domain of unknown function (DUF4402)
Probab=27.78 E-value=2.7e+02 Score=21.08 Aligned_cols=60 Identities=18% Similarity=0.296 Sum_probs=36.8
Q ss_pred CceEEEeecCCCCCeeEEeeeeeeecc----eeeeeEEee------------ecCCceeEEeeeEEeecCCceeeeEE
Q 029571 56 PGFFIVDYNVPKKDFRFQFMNSVRVAD----KPLNLTYIH------------GRGDNRTILEGTLVFDSANKVSANHV 117 (191)
Q Consensus 56 PGsF~iDy~vp~~d~RFQFmn~~~v~~----K~lnlTY~H------------~~~~nrT~lDgtl~~D~aNKls~~y~ 117 (191)
|+.|.|.- -|.+.+.+++..++.+.. ..+.++=.- ..+...--+-|+|.++ +|.-.+.|.
T Consensus 46 ~a~f~V~G-~~~~~v~it~p~~~~l~~~~g~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~VGGtL~v~-~~~~~G~Ys 121 (130)
T PF14352_consen 46 PAEFTVSG-EPGSNVSITLPSTITLTNSNGGNTMTVTNFTGNSSGSSTTTLDTGGSATFNVGGTLNVP-ANQAAGTYS 121 (130)
T ss_pred CEEEEEEc-CCCCEEEEEecCCEEEecCCCCceEEEEeeecccccccceEecCCCcEEEEEEEEEEcC-CCCCCeEEE
Confidence 99999998 778888888886665533 333332221 1144444566777776 455566665
No 21
>PRK13285 flagellar assembly protein FliW; Provisional
Probab=27.71 E-value=1.6e+02 Score=23.96 Aligned_cols=71 Identities=17% Similarity=0.271 Sum_probs=50.5
Q ss_pred ceEEEeecCceEEEeecCC-----------CCCeeEEeeeeeeecceeeeeEEeeecCCcee-EEeeeEEeecCCceeee
Q 029571 48 GLALAVEKPGFFIVDYNVP-----------KKDFRFQFMNSVRVADKPLNLTYIHGRGDNRT-ILEGTLVFDSANKVSAN 115 (191)
Q Consensus 48 GlsL~vEKPGsF~iDy~vp-----------~~d~RFQFmn~~~v~~K~lnlTY~H~~~~nrT-~lDgtl~~D~aNKls~~ 115 (191)
+|+|-|=.|..|.-||++. +..-....++.+.+-+. ..+.| =|=|=++|++.|++..-
T Consensus 55 ~~~F~vi~P~~~~~dY~~~l~~~~~~~L~i~~~~dv~v~~iVti~~~----------~~~~T~NL~APIViN~~~~~g~Q 124 (148)
T PRK13285 55 DLAFVVIDPFNFFPDYEFDLDEEELELLGIESEEDVLVLVIVTIPED----------PEKITANLQAPIIINKKKRKGKQ 124 (148)
T ss_pred ceEEEEeCHHHhCCCCccccCHHHHHhcCCCChhheEEEEEEEcCCC----------cccceEeecCCEEEECCCCEEEE
Confidence 5889999999999999865 12223345555555432 23333 36788999999999999
Q ss_pred EEecCCceeEEEE
Q 029571 116 HVLGSGNCKLKYT 128 (191)
Q Consensus 116 y~f~s~~cklKYs 128 (191)
..+...+-.+||-
T Consensus 125 vIl~~~~y~~r~p 137 (148)
T PRK13285 125 VILDNEKYSTKHP 137 (148)
T ss_pred EEeCCCCCccccc
Confidence 9999777777764
No 22
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=27.38 E-value=7 Score=33.83 Aligned_cols=55 Identities=31% Similarity=0.367 Sum_probs=41.7
Q ss_pred CceEEeeeeeceeeecCCCccceEEEeecCceEEEeecCCCCCeeEEeeeeeeecceeeeeEEeee---cCCceeEEeee
Q 029571 27 GDVKLRASLTDATVVNGPSLNGLALAVEKPGFFIVDYNVPKKDFRFQFMNSVRVADKPLNLTYIHG---RGDNRTILEGT 103 (191)
Q Consensus 27 GDlkLrAs~TDatfv~GpSL~GlsL~vEKPGsF~iDy~vp~~d~RFQFmn~~~v~~K~lnlTY~H~---~~~nrT~lDgt 103 (191)
|==.|...++|.|| -||++.|..+|| |++...-++| -+|.|. |+++.|++-+-
T Consensus 75 giE~L~i~T~D~~~--~Ps~~~i~~aVe-------------------Fi~k~asLGk---tvYVHCKAGRtRSaTvV~cY 130 (183)
T KOG1719|consen 75 GIEFLVIPTRDYTG--APSLENIQKAVE-------------------FIHKNASLGK---TVYVHCKAGRTRSATVVACY 130 (183)
T ss_pred cceeEEeccccccC--CCCHHHHHHHHH-------------------HHHhccccCC---eEEEEecCCCccchhhhhhh
Confidence 33457888899998 799999988886 7777777777 579995 47777877665
Q ss_pred EE
Q 029571 104 LV 105 (191)
Q Consensus 104 l~ 105 (191)
|+
T Consensus 131 Lm 132 (183)
T KOG1719|consen 131 LM 132 (183)
T ss_pred hh
Confidence 54
No 23
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins. L-Arabinose is a constituent of plant cell wall polysaccharides. It is found in a polymeric form in L-arabinan, in which the backbone is formed by 1,5-a- linked l-arabinose residues that can be branched via 1,2-a- and 1,3-a-linked l-arabinofuranose side chains. AbfB hydrolyses 1,5-a, 1,3-a and 1,2-a linkages in both oligosaccharides and polysaccharides, which contain terminal non-reducing l-arabinofuranoses in side chains [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3AKI_A 3AKF_A 3AKH_A 3AKG_A 2D44_A 1WD3_A 2D43_A 1WD4_A 3KMV_E.
Probab=26.86 E-value=50 Score=26.93 Aligned_cols=28 Identities=29% Similarity=0.551 Sum_probs=19.0
Q ss_pred eeceeeecCCCccc---eEE-EeecCceEEEe
Q 029571 35 LTDATVVNGPSLNG---LAL-AVEKPGFFIVD 62 (191)
Q Consensus 35 ~TDatfv~GpSL~G---lsL-~vEKPGsF~iD 62 (191)
-.|++|.-=|+|.+ +|| ++.+||.||--
T Consensus 36 r~da~f~vvpGLa~~~~vSfES~~~PG~yLrh 67 (142)
T PF05270_consen 36 RADATFRVVPGLADSSCVSFESVNYPGYYLRH 67 (142)
T ss_dssp HHGG-EEEEE-SS-TTCEEEEESSSTTEEEEE
T ss_pred ccCceEEEEEccCCCCEEEEEECCCCCcEEEE
Confidence 34788886666654 787 56899999965
No 24
>PF07532 Big_4: Bacterial Ig-like domain (group 4); InterPro: IPR011081 This entry represents bacterial domains with an Ig-like fold. These domains are found in a variety of bacterial surface proteins.
Probab=26.39 E-value=95 Score=20.77 Aligned_cols=33 Identities=21% Similarity=0.516 Sum_probs=23.1
Q ss_pred CCeeEEEEeecce-eEEEEEecCC----CCCcceEEcC
Q 029571 159 DDMFRASYQTSSK-ALALEWSRNS----KINGDFKVTG 191 (191)
Q Consensus 159 ~d~~katYq~s~k-~lGleWsR~s----k~~G~FKv~~ 191 (191)
-..+++.|...+. .+.+.|...+ ..-|.|.|.|
T Consensus 17 P~~V~v~~~dGs~~~~~V~W~~~~~~~~~~~G~y~v~G 54 (59)
T PF07532_consen 17 PETVTVTYSDGSTEEVPVTWDPIDPYDYNKPGTYTVTG 54 (59)
T ss_pred CCEEEEEECCCCEEEEEeEeCCCChhhccCCEEEEEEE
Confidence 3567888876554 8999999532 2258898876
No 25
>PF07608 DUF1571: Protein of unknown function (DUF1571); InterPro: IPR011465 This is a family of paralogous proteins found in Planctomycetacia and Betaproteobacteria.
Probab=24.95 E-value=4.1e+02 Score=23.42 Aligned_cols=63 Identities=14% Similarity=0.290 Sum_probs=46.1
Q ss_pred CeeEEeeeeeeecceee-eeEEeeecCCce-eEEeeeEEeecCCceeeeEEe--------cCCceeEEEEEEe
Q 029571 69 DFRFQFMNSVRVADKPL-NLTYIHGRGDNR-TILEGTLVFDSANKVSANHVL--------GSGNCKLKYTYVH 131 (191)
Q Consensus 69 d~RFQFmn~~~v~~K~l-nlTY~H~~~~nr-T~lDgtl~~D~aNKls~~y~f--------~s~~cklKYsYvH 131 (191)
..+-.|.-...+.++|+ -|+|+|+.++.. .-==..+.||..++|=..+.- +.+.--=+|+|..
T Consensus 119 ~~~~~~~~~~~~~gr~~~~l~~~~p~~~~~~~f~~~~v~iD~e~~lpir~e~y~wp~~~~~~~~L~E~Y~y~~ 191 (213)
T PF07608_consen 119 ESEVTFVENATFDGRPVTALQYEHPTKRPQFDFHKAEVYIDDELGLPIRVEAYDWPESEDNDGELVEEYVYTD 191 (213)
T ss_pred ccceeeccccccCCceEEEEEEECCCCCCCcceeEEEEEEccccCCcEEEEeccCCCCCCCCCcEEEEEEEEe
Confidence 67778888889999775 589999888776 555566779999999887654 2233344788843
No 26
>TIGR03016 pepcterm_hypo_1 uncharacterized protein, PEP-CTERM system associated. Members of this protein family are found predominantly in exopolysaccharide biosynthesis operons marked by the presence of the EpsH-family putative exosortase and presence in the genome of the PEP-CTERM protein sorting signal. Members of this family may be distantly related to the EpsL family modeled in TIGR03014.
Probab=22.99 E-value=6.1e+02 Score=23.54 Aligned_cols=74 Identities=15% Similarity=0.073 Sum_probs=43.9
Q ss_pred ecceeeeeEEeeecCCc-eeEEeeeEEeec--CC----------ceeeeEEecC-CceeEEEEEEeCCeeeeeeeecccc
Q 029571 80 VADKPLNLTYIHGRGDN-RTILEGTLVFDS--AN----------KVSANHVLGS-GNCKLKYTYVHGGLTTFEQWYDLAK 145 (191)
Q Consensus 80 v~~K~lnlTY~H~~~~n-rT~lDgtl~~D~--aN----------Kls~~y~f~s-~~cklKYsYvH~g~tT~EP~yD~~~ 145 (191)
+....+++.+.|-..++ .+-+..+..=|- .. .++++|.|.. -.+.|.|.|...--. -+..|+..
T Consensus 343 ~~~~~~~~~~~h~l~~rl~~~l~~~y~~~dy~~~~~r~d~~~~~~~gl~Y~~~~~~~~~l~Y~y~~~dSn--~~~~~Y~~ 420 (431)
T TIGR03016 343 TRQTGGSVLLTHRLSPRLTANLGLTYERNEGSGTNDQETDRTSVSAGLSYQLGENTTGSLTYRYQERDSN--FEATDYTE 420 (431)
T ss_pred eEEEeeeEEEEEecccccceeEEEEEEEeeccCCCCcccceEEEEEEEEEEecCCcEEEEEEEEEEecCC--cccCchhh
Confidence 55566778888853332 222222222111 11 3678888854 558888888776422 26788888
Q ss_pred ceeeeEEEee
Q 029571 146 NSWDFAVSRK 155 (191)
Q Consensus 146 nsWdfavsrk 155 (191)
|.+-+.+...
T Consensus 421 N~i~l~l~~~ 430 (431)
T TIGR03016 421 NRLMAEVTMT 430 (431)
T ss_pred eEEEEEEEEe
Confidence 8887776654
No 27
>PF03548 LolA: Outer membrane lipoprotein carrier protein LolA; InterPro: IPR004564 This protein, LolA, is known so far only in the gamma subdivision of the Proteobacteria. In Escherichia coli, lipoproteins are anchored to the periplasmic side of either the inner or outer membrane through N-terminal lipids, depending on the lipoprotein-sorting signal present at position 2 []. Five Lol proteins are involved in the sorting and outer membrane localization of lipoproteins. LolCDE, an ATP binding cassette (ABC) transporter, in the inner membrane releases outer membrane-directed lipoproteins from the inner membrane in an ATP-dependent manner, leading to the formation of a water-soluble complex between the lipoprotein and the molecular chaperone, LolA. The LolA-lipoprotein complex crosses the periplasm and then interacts with outer membrane receptor LolB, which is essential for the anchoring of lipoproteins to the outer membrane. E. coli lipoproteins are anchored to the inner or outer membrane depending on the residue at position 2. Aspartate at this position makes lipoproteins specific to the inner membrane, whereas other residues cause the release of lipoproteins from the inner membrane.; GO: 0015031 protein transport, 0030288 outer membrane-bounded periplasmic space; PDB: 2W7Q_B 1UA8_A 1IWL_A 2ZPC_A 2ZPD_A 3KSN_A.
Probab=22.28 E-value=1e+02 Score=22.85 Aligned_cols=19 Identities=26% Similarity=0.543 Sum_probs=16.4
Q ss_pred EEEeecCceEEEeecCCCC
Q 029571 50 ALAVEKPGFFIVDYNVPKK 68 (191)
Q Consensus 50 sL~vEKPGsF~iDy~vp~~ 68 (191)
.|.+.|||-|.++|.-|.+
T Consensus 28 ~~~~~~p~~~r~~~~~P~~ 46 (165)
T PF03548_consen 28 TFYFKKPNKFRWEYTKPEE 46 (165)
T ss_dssp EEEEETTTEEEEEEECTS-
T ss_pred EEEEEcCCeEEEEECCCCc
Confidence 4788999999999999987
No 28
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=21.22 E-value=3.3e+02 Score=19.71 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=12.5
Q ss_pred CceeEEEEEEeCCeeee
Q 029571 121 GNCKLKYTYVHGGLTTF 137 (191)
Q Consensus 121 ~~cklKYsYvH~g~tT~ 137 (191)
+.|+|.+++.+.|...+
T Consensus 102 g~T~vt~~~~~~g~~~~ 118 (144)
T cd07825 102 GRTRVTETYDWSAVTDL 118 (144)
T ss_pred CcEEEEEEEeccCChhh
Confidence 56999998887765443
No 29
>PRK07093 para-aminobenzoate synthase component I; Validated
Probab=20.83 E-value=57 Score=29.75 Aligned_cols=29 Identities=24% Similarity=0.564 Sum_probs=20.9
Q ss_pred eecCceEEEeecC-----------CCCCeeEEeeeeeeec
Q 029571 53 VEKPGFFIVDYNV-----------PKKDFRFQFMNSVRVA 81 (191)
Q Consensus 53 vEKPGsF~iDy~v-----------p~~d~RFQFmn~~~v~ 81 (191)
-++|..|+|||+. +++++.|+|=.--++.
T Consensus 16 ~~~pf~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (323)
T PRK07093 16 QKTPFFFLIDFEQQKPIIEPLEELAESGILFDFNGKTNVP 55 (323)
T ss_pred cCCCEEEEEEcccCceEEEEcccCCccceEEEcCCcccCC
Confidence 3679999999996 3456788887544444
No 30
>PF11854 DUF3374: Protein of unknown function (DUF3374); InterPro: IPR020016 Members of this protein family are integral proteins of the bacterial outer membrane, associated with multi-haem c-type cytochromes involved in electron transfer [, ]. The MtrB protein of Shewanella oneidensis MR-1 (SO1776) has been shown to form a complex with 1:1:1 stochiometry with the small, periplasmic decahaem cytochrome MtrA and large, surface-exposed decahaem cytochrome MtrC.
Probab=20.75 E-value=7.6e+02 Score=24.67 Aligned_cols=105 Identities=15% Similarity=0.202 Sum_probs=0.0
Q ss_pred EeecCCCCCeeEEeeeeeeecceeeeeEEeeec---CCceeEEe------------eeEEeecCCc-----eeeeEEecC
Q 029571 61 VDYNVPKKDFRFQFMNSVRVADKPLNLTYIHGR---GDNRTILE------------GTLVFDSANK-----VSANHVLGS 120 (191)
Q Consensus 61 iDy~vp~~d~RFQFmn~~~v~~K~lnlTY~H~~---~~nrT~lD------------gtl~~D~aNK-----ls~~y~f~s 120 (191)
|||.-+.-+...+|...- =.+.|.|..|. .-+...++ |.+.++|.|+ |++.|.|+
T Consensus 169 ID~~T~~~~ag~~~~G~~----w~~~~~Y~gS~F~N~~~~l~~~n~~~~~~G~~~~~~~al~PDN~ahq~~~sg~y~l~- 243 (637)
T PF11854_consen 169 IDYTTDQLNAGVSYSGDN----WQLGLGYQGSFFRNDIDSLTWQNPFNPTFGAATYGQMALAPDNQAHQVSLSGQYNLP- 243 (637)
T ss_pred ccccccEEEEEEEEeCCc----eEEEEEEeEEEEEcCCCceeecCCCCcccccccccccccCCCchheEEEEEEEEecC-
Q ss_pred CceeEEEEEEeCCeeeeeeeeccc---------------cceeeeEEEeeecCCCeeEEEEeecce
Q 029571 121 GNCKLKYTYVHGGLTTFEQWYDLA---------------KNSWDFAVSRKVYGDDMFRASYQTSSK 171 (191)
Q Consensus 121 ~~cklKYsYvH~g~tT~EP~yD~~---------------~nsWdfavsrkv~g~d~~katYq~s~k 171 (191)
+-++.-..+.|..|-=|+-.++. +--.++.++-|+-.+=.|+|+|+-+.+
T Consensus 244 -~t~~~~~~~~g~mtQdd~f~~~t~~~~lp~~sldG~VdT~~~~l~~tsr~~~~l~l~a~y~Y~Dr 308 (637)
T PF11854_consen 244 -RTRFSGRLSYGRMTQDDAFIPATIGPALPAQSLDGEVDTLDANLKLTSRPTPDLRLTASYRYSDR 308 (637)
T ss_pred -CcEEEEEEEEEEEecCccccccccccCCCccccCcEEEEeeeeEEEEeeEcCCcEEEEEEEEeec
No 31
>smart00700 JHBP Juvenile hormone binding protein domains in insects. The juvenile hormone exerts pleiotropic functions during insect life cycles and its binding proteins regulate these functions.
Probab=20.51 E-value=3.9e+02 Score=21.89 Aligned_cols=77 Identities=18% Similarity=0.374 Sum_probs=54.5
Q ss_pred EEEEEe--cCceEEeeeeeceeeecCCC---ccceEEEeecCceEEEeecCCCCCeeEEeeeeeeecceeeeeEEeeecC
Q 029571 20 ATVAFN--AGDVKLRASLTDATVVNGPS---LNGLALAVEKPGFFIVDYNVPKKDFRFQFMNSVRVADKPLNLTYIHGRG 94 (191)
Q Consensus 20 atv~~~--aGDlkLrAs~TDatfv~GpS---L~GlsL~vEKPGsF~iDy~vp~~d~RFQFmn~~~v~~K~lnlTY~H~~~ 94 (191)
..+.+. .|.+.++++.+|..+- |.+ ++-+.+-+++ -.+.++..+|+=.++-++.-..+++.-| ++..|
T Consensus 48 ~~~~i~~~~~~~~~~~~~~n~~i~-Gl~~~~i~~~~~~~~~-~~~~~~~~~p~l~~~g~Y~~~g~ll~lp-----i~g~G 120 (225)
T smart00700 48 DDLKISIGSGVIGLRLTFKNVKIY-GLSNFEITKFKMDLKD-KKIELKIEFPKLNVKGDYKLDGRLLGLP-----LNGKG 120 (225)
T ss_pred eeEEEecCCCceEEEEEEEEeEEE-cCcceEEEEEEecCCC-cEEEEEEECCcEEEEeeeEeeeEEEEEE-----ecCCC
Confidence 344443 5778999999998874 332 4556666676 5888999999888888888887775444 66767
Q ss_pred CceeEEeee
Q 029571 95 DNRTILEGT 103 (191)
Q Consensus 95 ~nrT~lDgt 103 (191)
+-...|+..
T Consensus 121 ~~~~~l~n~ 129 (225)
T smart00700 121 DANFTLENV 129 (225)
T ss_pred cEEEEEEee
Confidence 766666553
No 32
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=20.27 E-value=50 Score=26.01 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=4.3
Q ss_pred EeecCCceeeeEEecCCceeEEE
Q 029571 105 VFDSANKVSANHVLGSGNCKLKY 127 (191)
Q Consensus 105 ~~D~aNKls~~y~f~s~~cklKY 127 (191)
+=|-|||+.+...|+ |+|-+-|
T Consensus 102 AR~~An~IkV~m~F~-g~s~vel 123 (138)
T PF06009_consen 102 ARDAANRIKVSMKFN-GNSGVEL 123 (138)
T ss_dssp ----------B--------EEEE
T ss_pred HHHHHhheeeeeEEC-CCceeee
Confidence 347899999999998 9999877
No 33
>PRK00031 lolA lipoprotein chaperone; Reviewed
Probab=20.08 E-value=1e+02 Score=24.43 Aligned_cols=20 Identities=30% Similarity=0.625 Sum_probs=17.8
Q ss_pred EEEeecCceEEEeecCCCCC
Q 029571 50 ALAVEKPGFFIVDYNVPKKD 69 (191)
Q Consensus 50 sL~vEKPGsF~iDy~vp~~d 69 (191)
.|.+.|||.|.++|.-|.+-
T Consensus 53 ~l~~kkP~~lrw~y~~P~~~ 72 (195)
T PRK00031 53 TLWVKRPNLFRWHYTKPDEQ 72 (195)
T ss_pred EEEEcCCCeEEEEecCCCcc
Confidence 58899999999999999854
Done!