Query 029571
Match_columns 191
No_of_seqs 28 out of 30
Neff 2.8
Searched_HMMs 29240
Date Tue Mar 26 00:55:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029571.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029571hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f95_A Beta-glucosidase; beta- 46.9 35 0.0012 27.9 5.5 62 60-126 49-116 (193)
2 2y0l_A OPDO, CIS-aconitate por 23.0 2.1E+02 0.007 24.7 6.7 58 112-170 222-281 (402)
3 4hci_A Cupredoxin 1; structura 21.8 1.8E+02 0.0062 19.6 5.1 18 20-37 28-46 (100)
4 3ef4_A Pseudoazurin, blue copp 21.0 1.3E+02 0.0046 22.4 4.5 47 20-67 22-83 (124)
5 4aui_A Porin (PORB); membrane 20.2 3.5E+02 0.012 21.8 9.5 79 43-132 151-231 (327)
6 3kmv_A Alpha-L-arabinofuranosi 19.1 1.3E+02 0.0046 23.7 4.4 29 34-62 38-72 (157)
7 1iwl_A P20, outer-membrane lip 18.9 84 0.0029 22.9 3.0 20 49-68 37-56 (182)
8 3szv_A Pyroglutatmate porin OP 18.3 2.1E+02 0.007 25.1 5.8 28 142-170 254-281 (401)
9 2w7q_A Outer-membrane lipoprot 18.1 87 0.003 23.7 3.0 19 50-68 58-76 (204)
10 1epa_A Epididymal retinoic aci 17.1 2.7E+02 0.0091 19.7 5.3 45 18-64 37-81 (164)
No 1
>3f95_A Beta-glucosidase; beta-sandwich, hydrolase; 1.80A {Pseudoalteromonas SP}
Probab=46.85 E-value=35 Score=27.87 Aligned_cols=62 Identities=13% Similarity=0.153 Sum_probs=41.6
Q ss_pred EEeecCCCCCeeEEeeeeeeecceeeeeEEeeecCCceeEEeeeEEee------cCCceeeeEEecCCceeEE
Q 029571 60 IVDYNVPKKDFRFQFMNSVRVADKPLNLTYIHGRGDNRTILEGTLVFD------SANKVSANHVLGSGNCKLK 126 (191)
Q Consensus 60 ~iDy~vp~~d~RFQFmn~~~v~~K~lnlTY~H~~~~nrT~lDgtl~~D------~aNKls~~y~f~s~~cklK 126 (191)
-+|+++.+..-||.|..+... .+.+.+.=+ -| +.-++|.|+|| |...|.+...=+..+|.-.
T Consensus 49 ~vD~~~QEDAr~~~w~G~~~a---~~~~~~~~~-~D-s~y~~~aL~fd~rvd~ap~~~v~L~m~Cg~~~C~~~ 116 (193)
T 3f95_A 49 SVNLSYQEDGRGFNWRAQAAL---SLSYLEPTP-LD-SKFSTGYLELKMRIDKAPEQGANLQVMCSESNCLRD 116 (193)
T ss_dssp EECSSSTTCEEEEEESSSEEE---EEEEEEEEE-CC-GGGTTCEEEEEEEEEECCTTCEEEEEEECSSCEEEE
T ss_pred eechhhccceeEeEEcCCCce---EEEEecCCC-cC-ChhhCceEEEEEEeecCCCCcEEEEEecCCCCccce
Confidence 389999999999999764320 222322222 34 66666688888 9999999888775557433
No 2
>2y0l_A OPDO, CIS-aconitate porin OPDH; transport protein, outer membrane, OPRD; 2.59A {Pseudomonas aeruginosa} PDB: 3t20_A
Probab=23.03 E-value=2.1e+02 Score=24.72 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=33.7
Q ss_pred eeeeEEecCCceeEE--EEEEeCCeeeeeeeeccccceeeeEEEeeecCCCeeEEEEeecc
Q 029571 112 VSANHVLGSGNCKLK--YTYVHGGLTTFEQWYDLAKNSWDFAVSRKVYGDDMFRASYQTSS 170 (191)
Q Consensus 112 ls~~y~f~s~~cklK--YsYvH~g~tT~EP~yD~~~nsWdfavsrkv~g~d~~katYq~s~ 170 (191)
+.++|.+.-+..+|+ ..|.+..-.-=.+.=++..+.|.+.++-+ .+++.+.+.||...
T Consensus 222 ~~~~~~~~l~~~~l~~~~~y~~~~d~G~~~~g~~D~~~~~~~~~~~-~~~~~~~~gY~~~~ 281 (402)
T 2y0l_A 222 VGLLHSWPIGPGELTSDLRFARSTDSGSAKAGGIDNKSLNGMFTYS-LGNHAFGAAWQRMN 281 (402)
T ss_dssp EEEEEEEECSSSEEEEEEEEEEEEECTTCTTCCCEEEEEEEEEEEE-ETTEEEEEEEEEEE
T ss_pred eeEEEecccCCCCEEEEEEEEEEeccChhhcCCcchHHheeEeEEE-ECCEEEEEEEEeec
Confidence 345666654444444 33433311101122245578999998888 57889999999854
No 3
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=21.83 E-value=1.8e+02 Score=19.61 Aligned_cols=18 Identities=6% Similarity=0.073 Sum_probs=11.8
Q ss_pred EEEEEecCc-eEEeeeeec
Q 029571 20 ATVAFNAGD-VKLRASLTD 37 (191)
Q Consensus 20 atv~~~aGD-lkLrAs~TD 37 (191)
++|++++|| |+|...=.|
T Consensus 28 ~~i~v~~G~tV~~~~~n~d 46 (100)
T 4hci_A 28 NVITIPINESTTLLLKNKG 46 (100)
T ss_dssp SEEEECTTSCEEEEEEECS
T ss_pred CEEEECCCCEEEEEEEcCC
Confidence 367788887 777654444
No 4
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=21.00 E-value=1.3e+02 Score=22.37 Aligned_cols=47 Identities=26% Similarity=0.377 Sum_probs=24.8
Q ss_pred EEEEEecCceEEeeeeec----eeeecC--CCc---------cceEEEeecCceEEEeecCCC
Q 029571 20 ATVAFNAGDVKLRASLTD----ATVVNG--PSL---------NGLALAVEKPGFFIVDYNVPK 67 (191)
Q Consensus 20 atv~~~aGDlkLrAs~TD----atfv~G--pSL---------~GlsL~vEKPGsF~iDy~vp~ 67 (191)
++|++.+||- ++-..+| +++.++ |+- +-.++.+++||.|.+--.+|.
T Consensus 22 ~~i~V~~GDT-V~f~n~~~~Hnv~~~~~~~p~g~~~~~~~pg~t~s~TF~~~G~y~Y~C~~H~ 83 (124)
T 3ef4_A 22 GFVKVEAGDT-VKFVPTDKSHNAESVREVWPEGVAPVKGGFSKEVVFNAEKEGLYVLKCAPHY 83 (124)
T ss_dssp SEEEECTTCE-EEEECSSSSCCCEECTTTSCTTSCCCBCCTTCCEEEECCSSEEEEEECTTTG
T ss_pred CEEEECCCCE-EEEEECCCCccEEEeCCcCCCCccccccCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 5788888883 4444555 444433 310 114555566666655444443
No 5
>4aui_A Porin (PORB); membrane protein, outer membrane protein, infection, invasio; HET: ATP; 3.20A {Neisseria gonorrhoeae}
Probab=20.18 E-value=3.5e+02 Score=21.84 Aligned_cols=79 Identities=9% Similarity=0.125 Sum_probs=35.9
Q ss_pred CCCccceEEEeecCceEEEeecCCCCCeeEEeeeeeeecceeeeeEEe--eecCCceeEEeeeEEeecCCceeeeEEecC
Q 029571 43 GPSLNGLALAVEKPGFFIVDYNVPKKDFRFQFMNSVRVADKPLNLTYI--HGRGDNRTILEGTLVFDSANKVSANHVLGS 120 (191)
Q Consensus 43 GpSL~GlsL~vEKPGsF~iDy~vp~~d~RFQFmn~~~v~~K~lnlTY~--H~~~~nrT~lDgtl~~D~aNKls~~y~f~s 120 (191)
.|++.||++++. +...= .+.....=.+.-.+.-..-|+.+.+. +.+....+. + .....+.+.|.|+.
T Consensus 151 sp~~~G~~~~a~----Y~~g~-~~~~~~~~~~~~~~~Y~~g~~~~~~a~~~~~~~~~~~-~-----~~~~~~~~~y~~~~ 219 (327)
T 4aui_A 151 SPEFAGFSGSVQ----YVPND-NSGKNRSESYHAGFNYKNDGFFVQYAGSYKRHNYTTE-K-----HQVHRLVGGYDHDA 219 (327)
T ss_dssp EEEETTEEEEEE----EECCC-CCSSSCCCEEEEEEEEECSSEEEEEEEEEESCCTTSE-E-----EEEEEEEEEEEETT
T ss_pred CCcccceeEEEE----EeccC-CCccccccceeeeeEEecCCeEEEEEEEEeccCCCcc-c-----ceeeeeeeeEEecc
Confidence 577777777652 11111 11111111333444555566665443 333222111 1 11224667788876
Q ss_pred CceeEEEEEEeC
Q 029571 121 GNCKLKYTYVHG 132 (191)
Q Consensus 121 ~~cklKYsYvH~ 132 (191)
-.-.+-|.|.+.
T Consensus 220 ~~~~~~~~~~~~ 231 (327)
T 4aui_A 220 LYASVAVQQQDA 231 (327)
T ss_dssp EEEEEEEEEEEE
T ss_pred eEEEEEEEEeee
Confidence 555555665543
No 6
>3kmv_A Alpha-L-arabinofuranosidase B; protein:carboydrate interactions, carbohydrate-binding modul trefoil fold, CBM42, sugar binding protein; 1.80A {Clostridium thermocellum}
Probab=19.14 E-value=1.3e+02 Score=23.69 Aligned_cols=29 Identities=17% Similarity=0.358 Sum_probs=21.4
Q ss_pred eeeceeeecCCCccce---EEEee---cCceEEEe
Q 029571 34 SLTDATVVNGPSLNGL---ALAVE---KPGFFIVD 62 (191)
Q Consensus 34 s~TDatfv~GpSL~Gl---sL~vE---KPGsF~iD 62 (191)
.-.|+||.--|.|.+- .+++| .||.||--
T Consensus 38 ~~~datF~vvpGLa~~~~g~VSfES~n~Pg~yLRh 72 (157)
T 3kmv_A 38 PEMDSQWELVPGLANSGDGYVSIQSVNYPGYYLRH 72 (157)
T ss_dssp SGGGGCEEEEECSSCCSTTEEEEEESSSTTEEEEE
T ss_pred CccCceEEEeCCcCCCCCCEEEEEECCCCCcEEEE
Confidence 3569999876777653 46666 99999964
No 7
>1iwl_A P20, outer-membrane lipoproteins carrier protein; unclosed beta barrel, protein transport; 1.65A {Escherichia coli} SCOP: b.125.1.1 PDB: 1ua8_A 3ksn_A 2zpd_A 2zpc_A
Probab=18.88 E-value=84 Score=22.94 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=17.4
Q ss_pred eEEEeecCceEEEeecCCCC
Q 029571 49 LALAVEKPGFFIVDYNVPKK 68 (191)
Q Consensus 49 lsL~vEKPGsF~iDy~vp~~ 68 (191)
-.|.+.|||-|.++|.-|..
T Consensus 37 G~~~~~rP~~~r~~~~~P~~ 56 (182)
T 1iwl_A 37 GDLWVKRPNLFNWHMTQPDE 56 (182)
T ss_dssp EEEEEETTTEEEEEECSSSC
T ss_pred EEEEEeCCCeEEEEECCCCc
Confidence 36889999999999998865
No 8
>3szv_A Pyroglutatmate porin OPDO; beta-barrel, channel, bacterial outer membrane, membrane Pro; HET: C8E; 1.45A {Pseudomonas aeruginosa} PDB: 2y0k_A*
Probab=18.32 E-value=2.1e+02 Score=25.11 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=23.3
Q ss_pred ccccceeeeEEEeeecCCCeeEEEEeecc
Q 029571 142 DLAKNSWDFAVSRKVYGDDMFRASYQTSS 170 (191)
Q Consensus 142 D~~~nsWdfavsrkv~g~d~~katYq~s~ 170 (191)
++.+++|.++++-++ +.+++.++||..+
T Consensus 254 ~iDn~~~s~~~~~~~-g~~t~~~~yq~~~ 281 (401)
T 3szv_A 254 ELDNRAFGALFSLRL-GAHAVAAGYQRIS 281 (401)
T ss_dssp CCEEEEEEEEEEEEE-TTEEEEEEEEEEE
T ss_pred cCCHHHHhheeEEEE-ecEEEEEEEEEec
Confidence 667889999998876 7889999999754
No 9
>2w7q_A Outer-membrane lipoprotein carrier protein; periplasmic chaperone, lipoprotein transport, transport, CHA protein transport; 1.88A {Pseudomonas aeruginosa}
Probab=18.14 E-value=87 Score=23.70 Aligned_cols=19 Identities=26% Similarity=0.688 Sum_probs=16.7
Q ss_pred EEEeecCceEEEeecCCCC
Q 029571 50 ALAVEKPGFFIVDYNVPKK 68 (191)
Q Consensus 50 sL~vEKPGsF~iDy~vp~~ 68 (191)
.|.+.|||-|.++|.-|..
T Consensus 58 ~~~~~rP~k~rw~~~~P~~ 76 (204)
T 2w7q_A 58 QLSLKRPGLFRWHTDAPNE 76 (204)
T ss_dssp EEEEETTTEEEEEECSSSC
T ss_pred EEEEeCCCEEEEEecCCce
Confidence 5889999999999998854
No 10
>1epa_A Epididymal retinoic acid-binding protein; 2.10A {Rattus norvegicus} SCOP: b.60.1.1 PDB: 1epb_A*
Probab=17.14 E-value=2.7e+02 Score=19.74 Aligned_cols=45 Identities=16% Similarity=0.056 Sum_probs=26.5
Q ss_pred eEEEEEEecCceEEeeeeeceeeecCCCccceEEEeecCceEEEeec
Q 029571 18 AAATVAFNAGDVKLRASLTDATVVNGPSLNGLALAVEKPGFFIVDYN 64 (191)
Q Consensus 18 a~atv~~~aGDlkLrAs~TDatfv~GpSL~GlsL~vEKPGsF~iDy~ 64 (191)
..|+++..-|.|++..++...- .+...+++..-.|.||.|.++..
T Consensus 37 ~~~~y~~~~g~i~v~~~~~~~~--~c~~~~~~~~~~~~~g~~~~~~~ 81 (164)
T 1epa_A 37 GAMVVELKENLLALTTTYYSED--HCVLEKVTATEGDGPAKFQVTRL 81 (164)
T ss_dssp EEEEEEEETTEEEEEEEEEETT--EEEEEEEEEEECSSTTEEEEEET
T ss_pred EEEEEEeCCCcEEEEEEEecCC--CeeEEEEEEEEcCCCcEEEEecC
Confidence 4577773467888887775421 12223333333388999988654
Done!