Query 029571
Match_columns 191
No_of_seqs 28 out of 30
Neff 2.8
Searched_HMMs 13730
Date Tue Mar 26 00:55:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029571.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029571hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1olma2 b.132.1.1 (A:275-393) 31.8 19 0.0014 24.8 3.4 35 40-75 10-45 (119)
2 d1fjca_ d.58.7.1 (A:) Nucleoli 30.2 13 0.00096 23.8 2.1 38 60-97 57-95 (96)
3 d2fgqx1 f.4.3.1 (X:3-332) Pori 29.9 1E+02 0.0073 22.8 11.0 87 77-168 173-259 (330)
4 d1rk8a_ d.58.7.1 (A:) RNA-bind 29.8 10 0.00074 24.1 1.5 35 60-94 53-88 (88)
5 d1cb8a2 b.24.1.1 (A:600-700) C 28.6 15 0.0011 25.1 2.3 19 46-64 33-51 (101)
6 d1g2ra_ d.192.1.1 (A:) Hypothe 26.5 12 0.00091 25.4 1.5 16 101-116 28-43 (94)
7 d1x5sa1 d.58.7.1 (A:8-97) Cold 25.7 12 0.00088 23.5 1.3 38 61-98 52-90 (90)
8 d2o14a1 b.18.1.32 (A:14-159) H 24.1 97 0.0071 21.9 6.3 71 19-102 66-136 (146)
9 d2cpza1 d.58.7.1 (A:383-484) C 22.9 13 0.00095 24.2 1.0 37 61-97 65-102 (102)
10 d1tdja2 d.58.18.2 (A:336-423) 21.5 9.4 0.00068 25.9 0.0 38 54-107 12-52 (88)
11 d1iwla_ b.125.1.1 (A:) Outer-m 21.3 33 0.0024 23.0 3.0 19 50-68 38-56 (182)
No 1
>d1olma2 b.132.1.1 (A:275-393) Supernatant protein factor (SPF), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.84 E-value=19 Score=24.79 Aligned_cols=35 Identities=17% Similarity=0.343 Sum_probs=26.0
Q ss_pred eecCCCccceEEEeecCceEE-EeecCCCCCeeEEee
Q 029571 40 VVNGPSLNGLALAVEKPGFFI-VDYNVPKKDFRFQFM 75 (191)
Q Consensus 40 fv~GpSL~GlsL~vEKPGsF~-iDy~vp~~d~RFQFm 75 (191)
..+|.++. |.+-|+.||+.| -++.....|+.|-..
T Consensus 10 V~~G~~~~-v~~~v~~~Gs~l~WeF~t~~~DI~Fgv~ 45 (119)
T d1olma2 10 ISRGSSHQ-VEYEILFPGCVLRWQFMSDGADVGFGIF 45 (119)
T ss_dssp ECTTCEEE-EEEEECSTTCEEEEEEEESSSCEEEEEE
T ss_pred ECCCCEEE-EEEEEeCCCcEEEEEEEeCCccEEEEEE
Confidence 44677766 888899999976 566667778888764
No 2
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}
Probab=30.17 E-value=13 Score=23.81 Aligned_cols=38 Identities=11% Similarity=0.339 Sum_probs=26.3
Q ss_pred EEeecCCCCCee-EEeeeeeeecceeeeeEEeeecCCce
Q 029571 60 IVDYNVPKKDFR-FQFMNSVRVADKPLNLTYIHGRGDNR 97 (191)
Q Consensus 60 ~iDy~vp~~d~R-FQFmn~~~v~~K~lnlTY~H~~~~nr 97 (191)
.|+|.=+...-+ .+=||...+.+++|++.|..+++.+|
T Consensus 57 fV~f~~~~~A~~A~~~l~~~~~~gr~i~V~~a~~k~~~r 95 (96)
T d1fjca_ 57 YIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGGTR 95 (96)
T ss_dssp EEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSCCCC
T ss_pred EEEeCCHHHHHHHHHHcCCCEECCEEEEEEEeCCCCCCC
Confidence 467765443322 23368889999999999999877654
No 3
>d2fgqx1 f.4.3.1 (X:3-332) Porin {Comamonas acidovorans [TaxId: 80866]}
Probab=29.87 E-value=1e+02 Score=22.85 Aligned_cols=87 Identities=17% Similarity=0.126 Sum_probs=48.1
Q ss_pred eeeecceeeeeEEeeecCCceeEEeeeEEeecCCceeeeEEecCCceeEEEEEEeCCeeeeeeeeccccceeeeEEEeee
Q 029571 77 SVRVADKPLNLTYIHGRGDNRTILEGTLVFDSANKVSANHVLGSGNCKLKYTYVHGGLTTFEQWYDLAKNSWDFAVSRKV 156 (191)
Q Consensus 77 ~~~v~~K~lnlTY~H~~~~nrT~lDgtl~~D~aNKls~~y~f~s~~cklKYsYvH~g~tT~EP~yD~~~nsWdfavsrkv 156 (191)
.+.-...||.+.+.+.+.++.+ .+.-.-...=.+.++|.|+. -+|.-.|.|.... ....=+...+.|.+++...+
T Consensus 173 ~~~Y~~g~l~~~~~y~~~~~~~--~~~~~~~~~~~~ga~Y~~g~--~~l~~~y~~~~~~-~~~~~~~~~~~~~~~a~y~~ 247 (330)
T d2fgqx1 173 YVAYDNGPLSASLGLAQQKTAV--GGLATDRDEITLGASYNFGV--AKLSGLLQQTKFK-RDIGGDIKTNSYMLGASAPV 247 (330)
T ss_dssp EEEEECSSEEEEEEEEEEEEEE--TTEEEEEEEEEEEEEEECSS--CEEEEEEEEEEEE-ETTSCEEEEEEEEEEEEEEE
T ss_pred EEEEecCCeEEEEEEEEecccc--cccccccceEEEEEEEEeee--EEEEEEEEEeeec-cccCceEEEeEEEEEEEEEe
Confidence 3344456777777665432221 11100001125889999974 4666555554211 11122344578899988888
Q ss_pred cCCCeeEEEEee
Q 029571 157 YGDDMFRASYQT 168 (191)
Q Consensus 157 ~g~d~~katYq~ 168 (191)
.+...+++.|..
T Consensus 248 ~~~~~~~~~y~~ 259 (330)
T d2fgqx1 248 GGVGEVKLQYAL 259 (330)
T ss_dssp TTTEEEEEEEEE
T ss_pred cccEEEEEEEEE
Confidence 877788888864
No 4
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=29.80 E-value=10 Score=24.08 Aligned_cols=35 Identities=14% Similarity=0.422 Sum_probs=27.3
Q ss_pred EEeecCCCCCee-EEeeeeeeecceeeeeEEeeecC
Q 029571 60 IVDYNVPKKDFR-FQFMNSVRVADKPLNLTYIHGRG 94 (191)
Q Consensus 60 ~iDy~vp~~d~R-FQFmn~~~v~~K~lnlTY~H~~~ 94 (191)
.|+|.-+....+ .+-||...+.+++|.+.|.+++|
T Consensus 53 fV~f~~~~~A~~A~~~lng~~l~g~~l~V~~a~~kG 88 (88)
T d1rk8a_ 53 LVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKG 88 (88)
T ss_dssp EEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC
T ss_pred eEEECCHHHHHHHHHHcCCCEECCEEEEEEEecCCC
Confidence 477776654444 45689999999999999999876
No 5
>d1cb8a2 b.24.1.1 (A:600-700) Chondroitinase AC {Pedobacter heparinus (Flavobacterium heparinum) [TaxId: 984]}
Probab=28.62 E-value=15 Score=25.10 Aligned_cols=19 Identities=16% Similarity=0.429 Sum_probs=16.9
Q ss_pred ccceEEEeecCceEEEeec
Q 029571 46 LNGLALAVEKPGFFIVDYN 64 (191)
Q Consensus 46 L~GlsL~vEKPGsF~iDy~ 64 (191)
+.||++.+.+|+++||..+
T Consensus 33 ~~gl~v~~d~p~~vmi~~~ 51 (101)
T d1cb8a2 33 VAGIEIETDKPCAVLIKHI 51 (101)
T ss_dssp ETTEEEEESSCEEEEEECT
T ss_pred cCCeEEEcCCceEEEEEEC
Confidence 5789999999999999765
No 6
>d1g2ra_ d.192.1.1 (A:) Hypothetical cytosolic protein SP0554 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=26.45 E-value=12 Score=25.44 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=13.8
Q ss_pred eeeEEeecCCceeeeE
Q 029571 101 EGTLVFDSANKVSANH 116 (191)
Q Consensus 101 Dgtl~~D~aNKls~~y 116 (191)
||.+++|+.+|+.++-
T Consensus 28 dg~v~~D~~~k~~GRG 43 (94)
T d1g2ra_ 28 EGQVFIDPTGKANGRG 43 (94)
T ss_dssp TSCEEEETTSCCCSEE
T ss_pred CCcEEEcCCCCCCCCE
Confidence 7999999999998763
No 7
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.67 E-value=12 Score=23.47 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=30.9
Q ss_pred EeecCCCCCee-EEeeeeeeecceeeeeEEeeecCCcee
Q 029571 61 VDYNVPKKDFR-FQFMNSVRVADKPLNLTYIHGRGDNRT 98 (191)
Q Consensus 61 iDy~vp~~d~R-FQFmn~~~v~~K~lnlTY~H~~~~nrT 98 (191)
|+|.=+...-+ .+=||...+.+++|.+.+...+.+||+
T Consensus 52 V~f~~~~~a~~Ai~~l~~~~~~g~~l~V~~a~~~~~~rs 90 (90)
T d1x5sa1 52 VTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRS 90 (90)
T ss_dssp EECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCCCCCC
T ss_pred EEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCCCCC
Confidence 78876665555 567889999999999999999888874
No 8
>d2o14a1 b.18.1.32 (A:14-159) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]}
Probab=24.14 E-value=97 Score=21.94 Aligned_cols=71 Identities=18% Similarity=0.247 Sum_probs=43.2
Q ss_pred EEEEEEecCceEEeeeeeceeeecCCCccceEEEeecCceEEEeecCCCCCeeEEeeeeeeecceeeeeEEeeecCCcee
Q 029571 19 AATVAFNAGDVKLRASLTDATVVNGPSLNGLALAVEKPGFFIVDYNVPKKDFRFQFMNSVRVADKPLNLTYIHGRGDNRT 98 (191)
Q Consensus 19 ~atv~~~aGDlkLrAs~TDatfv~GpSL~GlsL~vEKPGsF~iDy~vp~~d~RFQFmn~~~v~~K~lnlTY~H~~~~nrT 98 (191)
+=.+.++=|.-+++..+-|+... ..-.+|+.-.--++|.|. +-.| .+.|-+-+|+|.++|+++...+
T Consensus 66 ~f~v~vPnG~Y~Vtv~~Gd~~~~-~~~~eg~~~~~~~~g~~~----------~~~~--~V~VtDG~L~l~ft~~~~G~~~ 132 (146)
T d2o14a1 66 TFNVDLPNGLYEVKVTLGNTARA-SVAAEGVFQVINMTGDGA----------EDTF--QIPVTDGQLNLLVTEGKAGTAF 132 (146)
T ss_dssp CEEEECCSEEEEEEEEESSCSEE-EEEETTEEEEEEEESTTC----------EEEE--EEEECSSEEEEEEEESSTTSCC
T ss_pred eEEEECCCCeEEEEEEEecCCCc-cEEEeeEEeccccCCccE----------EEEE--EEEEECCeEEEEEecCCCCCcc
Confidence 34566667777777777774332 222445444334455443 2234 4789999999999999876666
Q ss_pred EEee
Q 029571 99 ILEG 102 (191)
Q Consensus 99 ~lDg 102 (191)
.|..
T Consensus 133 ~in~ 136 (146)
T d2o14a1 133 TLSA 136 (146)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6553
No 9
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.94 E-value=13 Score=24.24 Aligned_cols=37 Identities=24% Similarity=0.407 Sum_probs=30.4
Q ss_pred EeecCCCCCee-EEeeeeeeecceeeeeEEeeecCCce
Q 029571 61 VDYNVPKKDFR-FQFMNSVRVADKPLNLTYIHGRGDNR 97 (191)
Q Consensus 61 iDy~vp~~d~R-FQFmn~~~v~~K~lnlTY~H~~~~nr 97 (191)
|+|.-+....+ .+=||...+.+|+|.+.|..++.++|
T Consensus 65 V~f~~~~~A~~Ai~~lng~~~~g~~i~V~~a~~k~~~k 102 (102)
T d2cpza1 65 VSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 102 (102)
T ss_dssp EECSSHHHHHHHHHHHTTCEETTEECEEECCCCSCCCC
T ss_pred EEeCCHHHHHHHHHHhCCCEECCEEEEEEEeCCCCCCC
Confidence 88877776666 56789999999999999998877764
No 10
>d1tdja2 d.58.18.2 (A:336-423) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=21.53 E-value=9.4 Score=25.92 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=23.2
Q ss_pred ecCceEEEeecCCCCCeeEEeeeeeeecceeeeeEEee---ecCCceeEEeeeEEee
Q 029571 54 EKPGFFIVDYNVPKKDFRFQFMNSVRVADKPLNLTYIH---GRGDNRTILEGTLVFD 107 (191)
Q Consensus 54 EKPGsF~iDy~vp~~d~RFQFmn~~~v~~K~lnlTY~H---~~~~nrT~lDgtl~~D 107 (191)
||||||. +|.+ ++++ -|+|=-| +-.+..-||=|.-+-|
T Consensus 12 ErpGaf~------------~F~~---~lg~-~nITeF~YR~~~~~~a~VlvGi~~~~ 52 (88)
T d1tdja2 12 EEKGSFL------------KFCQ---LLGG-RSVTEFNYRFADAKNACIFVGVRLSR 52 (88)
T ss_dssp BSSSCSH------------HHHH---TTSS-SEEEEEEEECCCSSBCEEEEEEECSS
T ss_pred CCccHHH------------HHHH---hcCc-CceEEEEEEccCCCCeEEEEEEEecC
Confidence 8999996 4554 3454 3777555 4456666666654433
No 11
>d1iwla_ b.125.1.1 (A:) Outer-membrane lipoproteins carrier protein LolA {Escherichia coli [TaxId: 562]}
Probab=21.33 E-value=33 Score=22.96 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=17.2
Q ss_pred EEEeecCceEEEeecCCCC
Q 029571 50 ALAVEKPGFFIVDYNVPKK 68 (191)
Q Consensus 50 sL~vEKPGsF~iDy~vp~~ 68 (191)
.|.+.|||-|.++|.-|..
T Consensus 38 ~~~~~kP~~~r~~y~~P~~ 56 (182)
T d1iwla_ 38 DLWVKRPNLFNWHMTQPDE 56 (182)
T ss_dssp EEEEETTTEEEEEECSSSC
T ss_pred EEEEEeCCEEEEEEccccc
Confidence 6899999999999998864
Done!