Query 029573
Match_columns 191
No_of_seqs 243 out of 1108
Neff 5.0
Searched_HMMs 29240
Date Tue Mar 26 00:58:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029573.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029573hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2da3_A Alpha-fetoprotein enhan 99.8 8.8E-21 3E-25 135.3 4.8 63 128-190 14-78 (80)
2 2vi6_A Homeobox protein nanog; 99.8 6.5E-21 2.2E-25 130.5 3.4 59 130-188 2-62 (62)
3 1nk2_P Homeobox protein VND; h 99.8 2.3E-20 7.8E-25 133.1 5.7 63 127-189 5-69 (77)
4 2dmt_A Homeobox protein BARH-l 99.8 1.9E-20 6.4E-25 134.4 5.2 61 129-189 15-77 (80)
5 2h1k_A IPF-1, pancreatic and d 99.8 1.5E-20 5E-25 129.3 4.2 59 130-188 2-62 (63)
6 2cra_A Homeobox protein HOX-B1 99.8 2.4E-20 8.3E-25 130.6 4.5 61 129-189 5-67 (70)
7 2dmu_A Homeobox protein goosec 99.8 4E-20 1.4E-24 129.3 5.3 61 129-189 5-67 (70)
8 2kt0_A Nanog, homeobox protein 99.8 3.6E-20 1.2E-24 133.6 5.0 61 129-189 20-82 (84)
9 2e1o_A Homeobox protein PRH; D 99.8 5.4E-20 1.8E-24 128.8 5.5 62 129-190 5-68 (70)
10 2da2_A Alpha-fetoprotein enhan 99.8 4E-20 1.4E-24 129.2 4.8 61 129-189 5-67 (70)
11 2cue_A Paired box protein PAX6 99.8 6E-20 2.1E-24 131.8 5.2 61 129-189 5-67 (80)
12 1uhs_A HOP, homeodomain only p 99.8 5.5E-20 1.9E-24 129.4 4.7 59 131-189 1-62 (72)
13 1bw5_A ISL-1HD, insulin gene e 99.8 3.6E-20 1.2E-24 128.2 3.5 60 131-190 3-64 (66)
14 2dmq_A LIM/homeobox protein LH 99.8 7.5E-20 2.6E-24 130.8 5.2 61 129-189 5-67 (80)
15 2dms_A Homeobox protein OTX2; 99.8 7.6E-20 2.6E-24 131.1 5.2 61 129-189 5-67 (80)
16 2djn_A Homeobox protein DLX-5; 99.8 4.5E-20 1.6E-24 129.2 3.9 61 129-189 5-67 (70)
17 2ecc_A Homeobox and leucine zi 99.8 7.1E-20 2.4E-24 132.4 4.9 57 133-189 5-63 (76)
18 2da1_A Alpha-fetoprotein enhan 99.8 6.3E-20 2.1E-24 128.2 4.1 61 129-189 5-67 (70)
19 1ig7_A Homeotic protein MSX-1; 99.8 8.2E-20 2.8E-24 123.1 4.5 55 132-186 1-57 (58)
20 2hdd_A Protein (engrailed home 99.8 6E-20 2E-24 125.3 3.8 56 131-186 3-60 (61)
21 1puf_A HOX-1.7, homeobox prote 99.8 1.7E-19 5.7E-24 128.6 5.9 60 129-188 11-72 (77)
22 2r5y_A Homeotic protein sex co 99.8 5.9E-20 2E-24 134.0 3.6 61 128-188 25-87 (88)
23 1wh5_A ZF-HD homeobox family p 99.8 8.6E-20 2.9E-24 132.0 4.1 58 129-186 15-78 (80)
24 1zq3_P PRD-4, homeotic bicoid 99.8 1.2E-19 4E-24 126.6 4.5 58 131-188 2-61 (68)
25 1yz8_P Pituitary homeobox 2; D 99.8 4.8E-20 1.6E-24 128.4 2.4 59 130-188 2-62 (68)
26 1jgg_A Segmentation protein EV 99.8 1.2E-19 4.2E-24 123.4 4.1 56 132-187 2-59 (60)
27 3a02_A Homeobox protein arista 99.8 8.1E-20 2.8E-24 124.3 3.2 57 134-190 2-60 (60)
28 2m0c_A Homeobox protein arista 99.8 1.7E-19 5.8E-24 126.9 4.8 61 129-189 7-69 (75)
29 1ahd_P Antennapedia protein mu 99.8 1.2E-19 4E-24 126.8 3.9 59 131-189 2-62 (68)
30 1fjl_A Paired protein; DNA-bin 99.8 1.8E-19 6.2E-24 129.4 4.7 60 129-188 16-77 (81)
31 2k40_A Homeobox expressed in E 99.8 1.5E-19 5E-24 125.5 4.1 59 131-189 1-61 (67)
32 2l7z_A Homeobox protein HOX-A1 99.8 1.5E-19 5.3E-24 127.8 4.2 60 129-188 5-66 (73)
33 3nar_A ZHX1, zinc fingers and 99.8 1.3E-19 4.3E-24 134.5 3.9 61 129-189 23-85 (96)
34 3rkq_A Homeobox protein NKX-2. 99.8 1.6E-19 5.6E-24 121.0 3.9 55 131-185 2-58 (58)
35 2hi3_A Homeodomain-only protei 99.8 2.3E-19 7.8E-24 126.7 4.8 59 131-189 2-63 (73)
36 2da5_A Zinc fingers and homeob 99.8 2.3E-19 8E-24 127.6 4.9 58 131-188 7-66 (75)
37 1b8i_A Ultrabithorax, protein 99.8 1.5E-19 5.2E-24 130.2 3.8 60 129-188 18-79 (81)
38 3a01_A Homeodomain-containing 99.8 3E-19 1E-23 132.0 5.4 60 129-188 15-76 (93)
39 2da4_A Hypothetical protein DK 99.8 1.3E-19 4.5E-24 129.8 3.2 61 129-189 6-72 (80)
40 1ftt_A TTF-1 HD, thyroid trans 99.8 2.8E-19 9.7E-24 124.7 4.6 58 131-188 2-61 (68)
41 2ly9_A Zinc fingers and homeob 99.8 3.7E-19 1.3E-23 125.5 4.1 59 130-188 5-65 (74)
42 3a03_A T-cell leukemia homeobo 99.8 3.3E-19 1.1E-23 120.0 3.7 52 136-187 2-55 (56)
43 1wh7_A ZF-HD homeobox family p 99.8 3.7E-19 1.3E-23 128.9 3.8 57 129-186 15-78 (80)
44 1b72_A Protein (homeobox prote 99.7 4.2E-19 1.4E-23 131.7 4.0 61 129-189 32-94 (97)
45 1akh_A Protein (mating-type pr 99.7 3.2E-19 1.1E-23 121.3 2.9 56 130-185 4-61 (61)
46 2dn0_A Zinc fingers and homeob 99.7 5.2E-19 1.8E-23 125.8 3.7 58 131-188 8-67 (76)
47 2cqx_A LAG1 longevity assuranc 99.7 2E-19 6.9E-24 127.7 1.5 59 130-188 7-68 (72)
48 1x2n_A Homeobox protein pknox1 99.7 1.3E-18 4.5E-23 122.5 5.5 61 129-189 5-70 (73)
49 2ecb_A Zinc fingers and homeob 99.7 1.5E-18 5E-23 128.6 4.1 56 133-188 13-70 (89)
50 2dmp_A Zinc fingers and homeob 99.7 3.8E-18 1.3E-22 125.3 5.7 56 133-188 15-72 (89)
51 1du6_A PBX1, homeobox protein 99.7 1E-18 3.4E-23 120.1 2.3 56 131-186 3-63 (64)
52 1k61_A Mating-type protein alp 99.7 2.1E-18 7.3E-23 117.1 3.9 53 134-186 1-58 (60)
53 2cuf_A FLJ21616 protein; homeo 99.7 2.5E-18 8.4E-23 127.1 4.5 61 129-189 5-82 (95)
54 1puf_B PRE-B-cell leukemia tra 99.7 2.9E-18 9.8E-23 120.8 4.3 57 132-188 2-63 (73)
55 2l9r_A Homeobox protein NKX-3. 99.7 1.8E-18 6.1E-23 122.4 2.9 54 137-190 10-65 (69)
56 2e19_A Transcription factor 8; 99.7 3.2E-18 1.1E-22 119.1 3.2 54 135-188 7-62 (64)
57 1b72_B Protein (PBX1); homeodo 99.7 4.7E-18 1.6E-22 123.2 4.2 57 132-188 2-63 (87)
58 1x2m_A LAG1 longevity assuranc 99.7 4E-18 1.4E-22 119.5 2.2 47 140-186 9-58 (64)
59 1le8_B Mating-type protein alp 99.7 8.6E-18 2.9E-22 121.6 3.8 57 132-188 3-64 (83)
60 1au7_A Protein PIT-1, GHF-1; c 99.7 6.6E-18 2.2E-22 134.1 3.3 60 129-188 85-146 (146)
61 2dmn_A Homeobox protein TGIF2L 99.7 1.7E-17 6E-22 120.2 5.1 59 130-188 6-69 (83)
62 1mnm_C Protein (MAT alpha-2 tr 99.7 1.5E-17 5.2E-22 120.9 4.3 58 129-186 25-87 (87)
63 1e3o_C Octamer-binding transcr 99.7 1.3E-17 4.3E-22 134.0 3.5 59 129-187 99-159 (160)
64 3nau_A Zinc fingers and homeob 99.7 1.6E-17 5.5E-22 117.2 3.3 51 138-188 11-63 (66)
65 2da6_A Hepatocyte nuclear fact 99.7 2.9E-17 1E-21 124.6 4.7 61 129-189 4-87 (102)
66 3d1n_I POU domain, class 6, tr 99.7 2.6E-17 9E-22 130.8 4.6 58 129-186 91-150 (151)
67 2xsd_C POU domain, class 3, tr 99.7 1.7E-17 5.7E-22 134.3 3.0 60 129-188 97-158 (164)
68 1lfb_A Liver transcription fac 99.7 1.6E-17 5.4E-22 125.0 2.3 61 129-189 7-90 (99)
69 3l1p_A POU domain, class 5, tr 99.6 4.7E-17 1.6E-21 130.2 3.4 58 129-186 94-153 (155)
70 2d5v_A Hepatocyte nuclear fact 99.6 5.4E-17 1.8E-21 130.1 2.7 60 129-188 95-156 (164)
71 1wi3_A DNA-binding protein SAT 99.6 2.7E-16 9.1E-21 112.0 3.9 58 129-186 5-65 (71)
72 3k2a_A Homeobox protein MEIS2; 99.6 2.8E-16 9.6E-21 109.8 3.1 53 137-189 4-61 (67)
73 1ic8_A Hepatocyte nuclear fact 99.5 6.2E-15 2.1E-19 122.7 0.4 58 130-187 114-194 (194)
74 2da7_A Zinc finger homeobox pr 99.4 1.8E-13 6.1E-18 97.7 2.9 45 140-184 14-60 (71)
75 1mh3_A Maltose binding-A1 home 99.4 1.2E-13 4.1E-18 120.3 1.9 53 133-185 367-421 (421)
76 2lk2_A Homeobox protein TGIF1; 99.4 2.6E-13 9E-18 100.6 3.3 52 137-188 11-67 (89)
77 2h8r_A Hepatocyte nuclear fact 99.3 7.9E-13 2.7E-17 112.1 3.1 57 129-185 140-219 (221)
78 2nzz_A Penetratin conjugated G 98.9 1.2E-10 4.2E-15 73.4 0.0 18 172-189 2-19 (37)
79 2ys9_A Homeobox and leucine zi 94.9 0.011 3.7E-07 41.8 1.9 41 139-179 14-56 (70)
80 1hlv_A CENP-B, major centromer 70.0 3 0.0001 30.3 2.8 48 133-183 3-52 (131)
81 1jko_C HIN recombinase, DNA-in 64.8 2.8 9.7E-05 24.8 1.5 42 137-183 5-48 (52)
82 2glo_A Brinker CG9653-PA; prot 63.6 4.2 0.00014 25.9 2.3 44 135-179 3-48 (59)
83 1tc3_C Protein (TC3 transposas 58.0 6.4 0.00022 22.7 2.2 38 137-179 5-44 (51)
84 2elh_A CG11849-PA, LD40883P; s 55.5 9.3 0.00032 26.2 3.1 41 133-178 18-60 (87)
85 3mzy_A RNA polymerase sigma-H 42.7 12 0.00042 26.9 2.1 45 137-189 109-155 (164)
86 3hug_A RNA polymerase sigma fa 42.3 11 0.00038 25.8 1.7 45 138-189 38-84 (92)
87 3i5g_B Myosin regulatory light 41.4 47 0.0016 24.4 5.3 39 133-171 5-48 (153)
88 1iuf_A Centromere ABP1 protein 38.4 17 0.00059 27.3 2.4 47 131-180 5-60 (144)
89 1ku3_A Sigma factor SIGA; heli 35.6 26 0.00087 22.8 2.6 48 137-187 10-59 (73)
90 2jn6_A Protein CGL2762, transp 35.1 29 0.00099 23.7 3.0 41 135-179 3-46 (97)
91 1tty_A Sigma-A, RNA polymerase 34.6 25 0.00085 23.9 2.5 48 138-188 19-68 (87)
92 2rgt_A Fusion of LIM/homeobox 33.1 0.93 3.2E-05 35.2 -5.7 30 129-158 134-163 (169)
93 2rn7_A IS629 ORFA; helix, all 31.0 40 0.0014 23.4 3.2 44 135-178 4-52 (108)
94 2o8x_A Probable RNA polymerase 29.3 27 0.00092 21.9 1.8 45 138-189 16-62 (70)
95 2lv7_A Calcium-binding protein 24.0 74 0.0025 22.0 3.5 44 134-177 26-78 (100)
96 1u78_A TC3 transposase, transp 23.3 48 0.0017 23.4 2.5 39 136-179 5-45 (141)
97 3c57_A Two component transcrip 22.1 36 0.0012 23.5 1.5 37 137-179 27-65 (95)
98 2rnj_A Response regulator prot 21.9 38 0.0013 23.0 1.6 37 137-179 29-67 (91)
99 2q24_A Putative TETR family tr 21.5 42 0.0014 24.6 1.9 36 145-182 23-60 (194)
100 1p4w_A RCSB; solution structur 21.5 58 0.002 23.0 2.6 39 135-179 32-72 (99)
101 3iz6_M 40S ribosomal protein S 20.0 68 0.0023 25.2 2.8 28 138-181 59-87 (152)
No 1
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.81 E-value=8.8e-21 Score=135.27 Aligned_cols=63 Identities=10% Similarity=0.023 Sum_probs=58.1
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhhcc
Q 029573 128 DGDTSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQFLI 190 (191)
Q Consensus 128 ~~~~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq~~ 190 (191)
....+|+|+.||.+|+.+||..|..++||+..++.+||.+|||+ ||+|||||||+|+|+++.-
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 78 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGPS 78 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhccC
Confidence 34567788889999999999999999999999999999999999 9999999999999997653
No 2
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.81 E-value=6.5e-21 Score=130.51 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=51.9
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhh
Q 029573 130 DTSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQF 188 (191)
Q Consensus 130 ~~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq 188 (191)
..+|+|+.||.+|+.+||..|..++||+..++.+||..|||+ +|+|||||||+|+|++|
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 357788899999999999999999999999999999999999 99999999999999976
No 3
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.81 E-value=2.3e-20 Score=133.13 Aligned_cols=63 Identities=17% Similarity=0.188 Sum_probs=57.8
Q ss_pred cCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhhc
Q 029573 127 EDGDTSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQFL 189 (191)
Q Consensus 127 ~~~~~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq~ 189 (191)
.....+|+|+.||..|+.+||..|..++||+..+|.+||.+|||+ ||+|||||||+|+|+++.
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~ 69 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQN 69 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhc
Confidence 345567788889999999999999999999999999999999999 999999999999998654
No 4
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.9e-20 Score=134.44 Aligned_cols=61 Identities=16% Similarity=0.049 Sum_probs=56.6
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhhc
Q 029573 129 GDTSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQFL 189 (191)
Q Consensus 129 ~~~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq~ 189 (191)
...+|+|+.||.+|+.+||..|..++||+..+|.+||..|+|+ ||+|||||||+|+|+...
T Consensus 15 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 15 KKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccC
Confidence 4567778889999999999999999999999999999999999 999999999999998653
No 5
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.80 E-value=1.5e-20 Score=129.30 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=54.0
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhh
Q 029573 130 DTSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQF 188 (191)
Q Consensus 130 ~~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq 188 (191)
..+|+|+.||..|+.+||..|..++||+..++.+||..|||+ ||+|||||||+|+|+.+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 457888999999999999999999999999999999999999 99999999999999863
No 6
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.80 E-value=2.4e-20 Score=130.63 Aligned_cols=61 Identities=13% Similarity=0.092 Sum_probs=57.1
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhhc
Q 029573 129 GDTSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQFL 189 (191)
Q Consensus 129 ~~~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq~ 189 (191)
+..+|+|+.||.+|+.+||..|..++||+..++.+||.+|||+ ||+|||||||+|+|+.+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCC
Confidence 4568888999999999999999999999999999999999999 999999999999998653
No 7
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=4e-20 Score=129.34 Aligned_cols=61 Identities=20% Similarity=0.122 Sum_probs=57.1
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhhc
Q 029573 129 GDTSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQFL 189 (191)
Q Consensus 129 ~~~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq~ 189 (191)
+..+|+|+.||.+|+.+||..|..++||+..++.+||.+|||+ ||+|||||||+|+|++..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 4567888999999999999999999999999999999999999 999999999999998754
No 8
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.80 E-value=3.6e-20 Score=133.58 Aligned_cols=61 Identities=15% Similarity=0.158 Sum_probs=57.1
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhhc
Q 029573 129 GDTSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQFL 189 (191)
Q Consensus 129 ~~~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq~ 189 (191)
+..+|+|+.||..|+.+||..|..++||+..+|..||..|||+ ||+|||||||+|+|+++.
T Consensus 20 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 20 VKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp SCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 5567888899999999999999999999999999999999999 999999999999998764
No 9
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=5.4e-20 Score=128.85 Aligned_cols=62 Identities=21% Similarity=0.209 Sum_probs=57.4
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhhcc
Q 029573 129 GDTSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQFLI 190 (191)
Q Consensus 129 ~~~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq~~ 190 (191)
...+++|++||.+|+.+||..|..++||+..++.+||.+|||+ ||+|||||||+|+|+....
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~~ 68 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGPS 68 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCCC
Confidence 3467788999999999999999999999999999999999999 9999999999999987643
No 10
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.79 E-value=4e-20 Score=129.16 Aligned_cols=61 Identities=16% Similarity=0.085 Sum_probs=57.2
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhhc
Q 029573 129 GDTSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQFL 189 (191)
Q Consensus 129 ~~~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq~ 189 (191)
+..+++|++||.+|+.+||..|..++||+..++.+||.+|||+ ||+|||||||+|+|+++.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhccc
Confidence 4567888999999999999999999999999999999999999 999999999999998754
No 11
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=6e-20 Score=131.80 Aligned_cols=61 Identities=15% Similarity=0.123 Sum_probs=57.1
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhhc
Q 029573 129 GDTSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQFL 189 (191)
Q Consensus 129 ~~~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq~ 189 (191)
+..+|+|+.||.+|+.+||..|..++||+..+|.+||..|||+ ||+|||||||+|+|+++.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 67 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhh
Confidence 4567888999999999999999999999999999999999999 999999999999998653
No 12
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.79 E-value=5.5e-20 Score=129.44 Aligned_cols=59 Identities=17% Similarity=0.179 Sum_probs=55.4
Q ss_pred CCCCCccCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhhc
Q 029573 131 TSRKKLRLSKDQSAILEESFKE-HNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQFL 189 (191)
Q Consensus 131 ~~RkR~r~s~~Q~~~LE~~F~~-~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq~ 189 (191)
|.++|++||.+|+.+||..|.. ++||+..+|.+||.+|||+ ||+|||||||+|+|+++.
T Consensus 1 G~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~ 62 (72)
T 1uhs_A 1 GSEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 62 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhcc
Confidence 4678899999999999999996 9999999999999999999 999999999999999764
No 13
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.79 E-value=3.6e-20 Score=128.24 Aligned_cols=60 Identities=17% Similarity=0.117 Sum_probs=56.5
Q ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhhcc
Q 029573 131 TSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQFLI 190 (191)
Q Consensus 131 ~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq~~ 190 (191)
.+|+|+.||.+|+.+||..|..++||+..++..||..|||+ ||+|||||||+|+|+++++
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 64 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSIM 64 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCCCS
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHhhh
Confidence 57788899999999999999999999999999999999999 9999999999999997653
No 14
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=7.5e-20 Score=130.78 Aligned_cols=61 Identities=13% Similarity=0.096 Sum_probs=57.0
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhhc
Q 029573 129 GDTSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQFL 189 (191)
Q Consensus 129 ~~~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq~ 189 (191)
+..+|+|+.||.+|+.+||..|..++||+..++..||.+|||+ ||+|||||||+|+|+++.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHH
Confidence 4468888999999999999999999999999999999999999 999999999999998753
No 15
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=7.6e-20 Score=131.10 Aligned_cols=61 Identities=16% Similarity=0.146 Sum_probs=57.1
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhhc
Q 029573 129 GDTSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQFL 189 (191)
Q Consensus 129 ~~~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq~ 189 (191)
+..+|+|+.||.+|+.+||..|..++||+..+|.+||.+|+|+ +|+|||||||+|+|+++.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 4567888999999999999999999999999999999999999 999999999999998753
No 16
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=4.5e-20 Score=129.23 Aligned_cols=61 Identities=18% Similarity=0.070 Sum_probs=57.0
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhhc
Q 029573 129 GDTSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQFL 189 (191)
Q Consensus 129 ~~~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq~ 189 (191)
+..+|+|+.||.+|+.+||..|..++||+..++.+||.+|||+ ||+|||||||+|+|+...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCC
Confidence 4568888999999999999999999999999999999999999 999999999999998653
No 17
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=7.1e-20 Score=132.36 Aligned_cols=57 Identities=19% Similarity=0.022 Sum_probs=53.9
Q ss_pred CCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhhc
Q 029573 133 RKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQFL 189 (191)
Q Consensus 133 RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq~ 189 (191)
.+|.+||.+|+.+||+.|..++||+..+|++||..|||+ ||+|||||||+|+|+.+|
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 566779999999999999999999999999999999999 999999999999999765
No 18
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=6.3e-20 Score=128.17 Aligned_cols=61 Identities=16% Similarity=0.036 Sum_probs=57.1
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhhc
Q 029573 129 GDTSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQFL 189 (191)
Q Consensus 129 ~~~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq~ 189 (191)
+..+|+|+.||.+|+.+||..|..++||+..++.+||..|||+ ||+|||||||+|+|++..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhcc
Confidence 4567888999999999999999999999999999999999999 999999999999998654
No 19
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.78 E-value=8.2e-20 Score=123.14 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=52.8
Q ss_pred CCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHh
Q 029573 132 SRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFL 186 (191)
Q Consensus 132 ~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~ 186 (191)
+|+|+.||.+|+.+||..|..++||+..++.+||..|||+ ||+|||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 4678899999999999999999999999999999999999 999999999999987
No 20
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.78 E-value=6e-20 Score=125.32 Aligned_cols=56 Identities=23% Similarity=0.209 Sum_probs=51.1
Q ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHh
Q 029573 131 TSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFL 186 (191)
Q Consensus 131 ~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~ 186 (191)
.+|+|+.||.+|+.+||..|..++||+..++.+||..|||+ ||+|||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 46788899999999999999999999999999999999999 999999999999987
No 21
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.78 E-value=1.7e-19 Score=128.63 Aligned_cols=60 Identities=20% Similarity=0.171 Sum_probs=56.3
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhh
Q 029573 129 GDTSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQF 188 (191)
Q Consensus 129 ~~~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq 188 (191)
+..+|+|+.||..|+.+||..|..++||+..+|.+||.+|||+ ||+|||||||+|+|+..
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 72 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKIN 72 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhh
Confidence 4567888899999999999999999999999999999999999 99999999999999854
No 22
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.78 E-value=5.9e-20 Score=133.98 Aligned_cols=61 Identities=18% Similarity=0.235 Sum_probs=53.4
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhh
Q 029573 128 DGDTSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQF 188 (191)
Q Consensus 128 ~~~~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq 188 (191)
.+..+|+|+.||..|+.+||..|..++||+..+|.+||..|||+ ||+|||||||+|+|+++
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 35568889999999999999999999999999999999999999 99999999999999865
No 23
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.78 E-value=8.6e-20 Score=131.97 Aligned_cols=58 Identities=12% Similarity=0.007 Sum_probs=54.3
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhh----cCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHh
Q 029573 129 GDTSRKKLRLSKDQSAILEESFKE----HNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFL 186 (191)
Q Consensus 129 ~~~~RkR~r~s~~Q~~~LE~~F~~----~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~ 186 (191)
+..+|+|+.||.+|+.+||..|+. ++||+..+|.+||..|||+ ||+|||||||+|+|.
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 456777888999999999999999 9999999999999999999 999999999999875
No 24
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.78 E-value=1.2e-19 Score=126.65 Aligned_cols=58 Identities=19% Similarity=0.257 Sum_probs=55.1
Q ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhh
Q 029573 131 TSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQF 188 (191)
Q Consensus 131 ~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq 188 (191)
.+|+|+.||.+|+.+||..|..++||+..++..||..|||+ +|+|||||||+|+|++.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~ 61 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQS 61 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHh
Confidence 47788999999999999999999999999999999999999 99999999999999854
No 25
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.77 E-value=4.8e-20 Score=128.44 Aligned_cols=59 Identities=14% Similarity=0.121 Sum_probs=56.0
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhh
Q 029573 130 DTSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQF 188 (191)
Q Consensus 130 ~~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq 188 (191)
..+|+|+.||..|+.+||..|..++||+..++.+||..|||+ ||+|||||||+|+|+++
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 62 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 62 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHh
Confidence 467888999999999999999999999999999999999999 99999999999999865
No 26
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.77 E-value=1.2e-19 Score=123.38 Aligned_cols=56 Identities=23% Similarity=0.220 Sum_probs=53.2
Q ss_pred CCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhh
Q 029573 132 SRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQ 187 (191)
Q Consensus 132 ~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~k 187 (191)
+|+|+.||.+|+.+||..|..++||+..++.+||..|||+ ||+|||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5778899999999999999999999999999999999999 9999999999999985
No 27
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.77 E-value=8.1e-20 Score=124.29 Aligned_cols=57 Identities=16% Similarity=0.105 Sum_probs=48.5
Q ss_pred CCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhhcc
Q 029573 134 KKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQFLI 190 (191)
Q Consensus 134 kR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq~~ 190 (191)
.|+.||.+|+.+||..|..++||+..++.+||.+|||+ ||+|||||||+|+|+++.|
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~k~ 60 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEKV 60 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC-----
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhccC
Confidence 46789999999999999999999999999999999999 9999999999999987654
No 28
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.77 E-value=1.7e-19 Score=126.95 Aligned_cols=61 Identities=16% Similarity=0.121 Sum_probs=56.7
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhhc
Q 029573 129 GDTSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQFL 189 (191)
Q Consensus 129 ~~~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq~ 189 (191)
+..+|+|+.||..|+.+||..|..++||+..++.+||..|||+ +|+|||||||+|+|+++.
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 4567778889999999999999999999999999999999999 999999999999998653
No 29
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.77 E-value=1.2e-19 Score=126.79 Aligned_cols=59 Identities=15% Similarity=0.118 Sum_probs=55.5
Q ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhhc
Q 029573 131 TSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQFL 189 (191)
Q Consensus 131 ~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq~ 189 (191)
.+|+|+.||.+|+.+||..|..++||+..++.+||..|||+ ||+|||||||+|+|++..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 36778899999999999999999999999999999999999 999999999999998653
No 30
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.77 E-value=1.8e-19 Score=129.39 Aligned_cols=60 Identities=17% Similarity=0.109 Sum_probs=55.7
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhh
Q 029573 129 GDTSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQF 188 (191)
Q Consensus 129 ~~~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq 188 (191)
+..+|+|+.||..|+.+||..|..++||+..+|..||.+|||+ ||+|||||||+|+|+++
T Consensus 16 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 16 RKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp -CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 4467788889999999999999999999999999999999999 99999999999998864
No 31
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-19 Score=125.47 Aligned_cols=59 Identities=15% Similarity=0.126 Sum_probs=55.5
Q ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhhc
Q 029573 131 TSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQFL 189 (191)
Q Consensus 131 ~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq~ 189 (191)
++|+|+.||.+|+.+||..|..++||+..++..||..|||+ ||+|||||||+|+|++..
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 36788999999999999999999999999999999999999 999999999999998653
No 32
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.77 E-value=1.5e-19 Score=127.77 Aligned_cols=60 Identities=12% Similarity=0.087 Sum_probs=56.1
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhh
Q 029573 129 GDTSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQF 188 (191)
Q Consensus 129 ~~~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq 188 (191)
..++|+|+.||..|+.+||..|..++||+..++.+||..|||+ ||+|||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 3468888999999999999999999999999999999999999 99999999999999853
No 33
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.77 E-value=1.3e-19 Score=134.49 Aligned_cols=61 Identities=13% Similarity=-0.014 Sum_probs=54.9
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhhc
Q 029573 129 GDTSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQFL 189 (191)
Q Consensus 129 ~~~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq~ 189 (191)
..++|+|++||..|+.+||..|+.++||+..+|.+||.+|||+ ||+|||||||+|+|+.++
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~l 85 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNL 85 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcc
Confidence 4467888999999999999999999999999999999999999 999999999999999764
No 34
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.77 E-value=1.6e-19 Score=120.95 Aligned_cols=55 Identities=20% Similarity=0.240 Sum_probs=52.3
Q ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHH
Q 029573 131 TSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTF 185 (191)
Q Consensus 131 ~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K 185 (191)
.+|+|+.|+..|+.+||..|..++||+..++.+||.+|||+ ||+|||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 46778889999999999999999999999999999999999 99999999999986
No 35
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.77 E-value=2.3e-19 Score=126.74 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=55.0
Q ss_pred CCCCCccCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhhc
Q 029573 131 TSRKKLRLSKDQSAILEESFKE-HNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQFL 189 (191)
Q Consensus 131 ~~RkR~r~s~~Q~~~LE~~F~~-~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq~ 189 (191)
..++|+.||.+|+.+||..|.. ++||+..+|.+||.+|||+ ||+|||||||+|+|+++.
T Consensus 2 ~~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 2 SAQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp CCSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhcc
Confidence 3577889999999999999995 9999999999999999999 999999999999998764
No 36
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.3e-19 Score=127.57 Aligned_cols=58 Identities=19% Similarity=0.091 Sum_probs=54.3
Q ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhh
Q 029573 131 TSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQF 188 (191)
Q Consensus 131 ~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq 188 (191)
..+|+++||.+|+.+||..|..++||+..+|.+||.+|||+ ||+|||||||+|+|+++
T Consensus 7 ~~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 7 GPTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 34677789999999999999999999999999999999999 99999999999999865
No 37
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.77 E-value=1.5e-19 Score=130.25 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=52.4
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhh
Q 029573 129 GDTSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQF 188 (191)
Q Consensus 129 ~~~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq 188 (191)
+..+|+|+.||.+|+.+||..|..++||+..+|.+||..|||+ ||+|||||||+|+|+++
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 4467788899999999999999999999999999999999999 99999999999999865
No 38
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.76 E-value=3e-19 Score=132.00 Aligned_cols=60 Identities=17% Similarity=0.144 Sum_probs=56.2
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhh
Q 029573 129 GDTSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQF 188 (191)
Q Consensus 129 ~~~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq 188 (191)
...+|+|+.||.+|+.+||..|..++||+..+|.+||..|||+ ||+|||||||+|+|++.
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 76 (93)
T 3a01_A 15 PKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQT 76 (93)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhh
Confidence 4567778889999999999999999999999999999999999 99999999999999864
No 39
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.3e-19 Score=129.84 Aligned_cols=61 Identities=11% Similarity=0.096 Sum_probs=56.7
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhc----CCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhhc
Q 029573 129 GDTSRKKLRLSKDQSAILEESFKEH----NTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQFL 189 (191)
Q Consensus 129 ~~~~RkR~r~s~~Q~~~LE~~F~~~----~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq~ 189 (191)
+..+|+|+.||.+|+.+||..|..+ +||+..+|.+||.+|||+ ||+|||||||+|+|+...
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~~ 72 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGI 72 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhccC
Confidence 4567888899999999999999999 999999999999999999 999999999999998653
No 40
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.76 E-value=2.8e-19 Score=124.67 Aligned_cols=58 Identities=19% Similarity=0.214 Sum_probs=54.8
Q ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhh
Q 029573 131 TSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQF 188 (191)
Q Consensus 131 ~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq 188 (191)
.+|+|+.||..|+.+||..|..++||+..++.+||..|||+ +|+|||||||+|+|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhh
Confidence 36778889999999999999999999999999999999999 99999999999999864
No 41
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.75 E-value=3.7e-19 Score=125.49 Aligned_cols=59 Identities=17% Similarity=0.079 Sum_probs=55.6
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhh
Q 029573 130 DTSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQF 188 (191)
Q Consensus 130 ~~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq 188 (191)
+.++.|+.||.+|+.+||..|..++||+..++.+||.+|||+ ||+|||||||+|+|+.+
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 357788999999999999999999999999999999999999 99999999999999865
No 42
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.75 E-value=3.3e-19 Score=120.00 Aligned_cols=52 Identities=19% Similarity=0.158 Sum_probs=48.9
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhh
Q 029573 136 LRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQ 187 (191)
Q Consensus 136 ~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~k 187 (191)
+.||.+|+.+||..|..++||+..+|.+||..|||+ ||+|||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 468999999999999999999999999999999999 9999999999999985
No 43
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.75 E-value=3.7e-19 Score=128.95 Aligned_cols=57 Identities=16% Similarity=0.168 Sum_probs=53.0
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHh
Q 029573 129 GDTSRKKLRLSKDQSAILEESFKE-----HNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFL 186 (191)
Q Consensus 129 ~~~~RkR~r~s~~Q~~~LE~~F~~-----~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~ 186 (191)
+..+|+|+.||.+|+.+|| .|.. ++||+..+|++||.+|+|+ ||+|||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 15 GTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 4467788889999999999 8999 9999999999999999999 999999999999875
No 44
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=4.2e-19 Score=131.74 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=53.8
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhhc
Q 029573 129 GDTSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQFL 189 (191)
Q Consensus 129 ~~~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq~ 189 (191)
+..+++|+.||.+|+.+||..|..++||+..+|.+||.+|||+ ||+|||||||+|+|+++.
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 4567888999999999999999999999999999999999999 999999999999998753
No 45
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.75 E-value=3.2e-19 Score=121.32 Aligned_cols=56 Identities=20% Similarity=0.206 Sum_probs=46.5
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHH
Q 029573 130 DTSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTF 185 (191)
Q Consensus 130 ~~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K 185 (191)
..+++|+.||.+|+.+||..|..++||+..++.+||.+|||+ ||+|||||||+|+|
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp --------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 356778889999999999999999999999999999999999 99999999999986
No 46
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=5.2e-19 Score=125.78 Aligned_cols=58 Identities=17% Similarity=0.032 Sum_probs=54.3
Q ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhh
Q 029573 131 TSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQF 188 (191)
Q Consensus 131 ~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq 188 (191)
..+.|++||.+|+.+||..|..++||+..+|.+||++|||+ ||+|||||||+|+|+++
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 45568889999999999999999999999999999999999 99999999999998854
No 47
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.74 E-value=2e-19 Score=127.67 Aligned_cols=59 Identities=8% Similarity=-0.024 Sum_probs=54.9
Q ss_pred CCCCCCccCCHHHHHHHHHHH-hhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhh
Q 029573 130 DTSRKKLRLSKDQSAILEESF-KEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQF 188 (191)
Q Consensus 130 ~~~RkR~r~s~~Q~~~LE~~F-~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq 188 (191)
.+.+++.+++.+|+.+||..| ..++||+..+|.+||.+|||+ ||+|||||||+|+|+..
T Consensus 7 ~g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 7 GGIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 357788889999999999999 999999999999999999999 99999999999999743
No 48
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=1.3e-18 Score=122.51 Aligned_cols=61 Identities=8% Similarity=-0.007 Sum_probs=56.4
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhhc
Q 029573 129 GDTSRKKLRLSKDQSAILEESFKE---HNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQFL 189 (191)
Q Consensus 129 ~~~~RkR~r~s~~Q~~~LE~~F~~---~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq~ 189 (191)
+..+++|+.|+..|+.+||..|.. ++||+..+|.+||.++||+ ||+|||||||+|+|+..+
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 456788889999999999999987 9999999999999999999 999999999999998654
No 49
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=1.5e-18 Score=128.58 Aligned_cols=56 Identities=25% Similarity=0.225 Sum_probs=51.8
Q ss_pred CCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhh
Q 029573 133 RKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQF 188 (191)
Q Consensus 133 RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq 188 (191)
++..+||.+|+.+||+.|..++||+..+|.+||..|||+ ||+|||||||+|+|++.
T Consensus 13 ~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 13 QKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred hhhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 344489999999999999999999999999999999999 99999999999998743
No 50
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.8e-18 Score=125.32 Aligned_cols=56 Identities=21% Similarity=0.140 Sum_probs=51.9
Q ss_pred CCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhh
Q 029573 133 RKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQF 188 (191)
Q Consensus 133 RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq 188 (191)
++..+||.+|+.+||..|..++||+..+|.+||.+|||+ ||+|||||||+|+|++.
T Consensus 15 ~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 15 QKFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp SCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 455569999999999999999999999999999999999 99999999999998754
No 51
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=1e-18 Score=120.10 Aligned_cols=56 Identities=13% Similarity=-0.005 Sum_probs=53.5
Q ss_pred CCCCCccCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHh
Q 029573 131 TSRKKLRLSKDQSAILEESF---KEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFL 186 (191)
Q Consensus 131 ~~RkR~r~s~~Q~~~LE~~F---~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~ 186 (191)
++++|+.|+.+|+.+||..| ..++||+..++.+||.+|||+ ||+|||||||+|+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 57888899999999999999 899999999999999999999 999999999999986
No 52
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.72 E-value=2.1e-18 Score=117.06 Aligned_cols=53 Identities=19% Similarity=0.197 Sum_probs=50.9
Q ss_pred CCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHh
Q 029573 134 KKLRLSKDQSAILEESFKE---HNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFL 186 (191)
Q Consensus 134 kR~r~s~~Q~~~LE~~F~~---~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~ 186 (191)
++++|+.+|+.+||..|.. ++||+..++.+||.++||+ ||+|||||||+|+|+
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 4678999999999999999 9999999999999999999 999999999999987
No 53
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=2.5e-18 Score=127.13 Aligned_cols=61 Identities=10% Similarity=0.030 Sum_probs=56.7
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcC---------------CC--cceeeCCchhhhHHhhhc
Q 029573 129 GDTSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLV---------------LR--ENEVKLEKKKKKTFLQFL 189 (191)
Q Consensus 129 ~~~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~---------------Ls--QVqVWFQNRRaK~K~kq~ 189 (191)
...+|+|+.|+..|+.+||..|+.++||+..+|++||..|+ |+ +|+|||||||+|+|+++.
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 44677888899999999999999999999999999999999 99 999999999999998763
No 54
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.72 E-value=2.9e-18 Score=120.75 Aligned_cols=57 Identities=16% Similarity=0.080 Sum_probs=54.0
Q ss_pred CCCCccCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhh
Q 029573 132 SRKKLRLSKDQSAILEESF---KEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQF 188 (191)
Q Consensus 132 ~RkR~r~s~~Q~~~LE~~F---~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq 188 (191)
+|+|++|+..|+.+||..| ..++||+..++..||.++||+ ||+|||||||+|+|++.
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 63 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 63 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccc
Confidence 6788899999999999999 899999999999999999999 99999999999998854
No 55
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.71 E-value=1.8e-18 Score=122.42 Aligned_cols=54 Identities=22% Similarity=0.193 Sum_probs=51.1
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhhcc
Q 029573 137 RLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQFLI 190 (191)
Q Consensus 137 r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq~~ 190 (191)
.+|..|+.+||..|..++||+..+|.+||.+|||+ ||+|||||||+|+|+++..
T Consensus 10 ~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 47999999999999999999999999999999999 9999999999999997653
No 56
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.2e-18 Score=119.06 Aligned_cols=54 Identities=9% Similarity=-0.048 Sum_probs=49.7
Q ss_pred CccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhh
Q 029573 135 KLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQF 188 (191)
Q Consensus 135 R~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq 188 (191)
...++.+|+.+||..|..++||+..+|.+||.+|||+ ||+|||||||||.++.|
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~~ 62 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISVQ 62 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCSS
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCCC
Confidence 4456799999999999999999999999999999999 99999999999988743
No 57
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.71 E-value=4.7e-18 Score=123.17 Aligned_cols=57 Identities=16% Similarity=0.080 Sum_probs=53.4
Q ss_pred CCCCccCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhh
Q 029573 132 SRKKLRLSKDQSAILEESF---KEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQF 188 (191)
Q Consensus 132 ~RkR~r~s~~Q~~~LE~~F---~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq 188 (191)
+|+|++|+..|+.+||..| ..++||+..+|..||.+|||+ ||+|||||||+|+|++.
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~ 63 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 63 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcc
Confidence 5788899999999999999 899999999999999999999 99999999999999854
No 58
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.69 E-value=4e-18 Score=119.46 Aligned_cols=47 Identities=15% Similarity=0.082 Sum_probs=44.2
Q ss_pred HHHHHHHHHHH-hhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHh
Q 029573 140 KDQSAILEESF-KEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFL 186 (191)
Q Consensus 140 ~~Q~~~LE~~F-~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~ 186 (191)
+.|+.+||+.| ..++||+..+|.+||++|||+ ||+|||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 56899999999 578899999999999999999 999999999999986
No 59
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.69 E-value=8.6e-18 Score=121.56 Aligned_cols=57 Identities=18% Similarity=0.125 Sum_probs=51.9
Q ss_pred CCCCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhh
Q 029573 132 SRKKLRLSKDQSAILEESFKE---HNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQF 188 (191)
Q Consensus 132 ~RkR~r~s~~Q~~~LE~~F~~---~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq 188 (191)
.+++++|+.+|+.+||..|.. ++||+..+|..||.++||+ ||+|||||||+|+|+..
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 345667999999999999999 9999999999999999999 99999999999999853
No 60
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.69 E-value=6.6e-18 Score=134.13 Aligned_cols=60 Identities=17% Similarity=0.170 Sum_probs=53.7
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhh
Q 029573 129 GDTSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQF 188 (191)
Q Consensus 129 ~~~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq 188 (191)
+..+|+|+.||..|+.+||..|..++||+..+|.+||.+|||+ ||+|||||||+|+|+++
T Consensus 85 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~k 146 (146)
T 1au7_A 85 ERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVK 146 (146)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhccC
Confidence 3457778889999999999999999999999999999999999 99999999999999864
No 61
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.69 E-value=1.7e-17 Score=120.20 Aligned_cols=59 Identities=10% Similarity=0.075 Sum_probs=54.0
Q ss_pred CCCCCCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhh
Q 029573 130 DTSRKKLRLSKDQSAILEESFKE---HNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQF 188 (191)
Q Consensus 130 ~~~RkR~r~s~~Q~~~LE~~F~~---~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq 188 (191)
..+++|++|+.+|+.+||..|.. ++||+..+|.+||.++||+ ||+|||||||+|+|++.
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~ 69 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDM 69 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHH
Confidence 45677888999999999999988 5999999999999999999 99999999999998854
No 62
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.68 E-value=1.5e-17 Score=120.94 Aligned_cols=58 Identities=17% Similarity=0.175 Sum_probs=53.6
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHh
Q 029573 129 GDTSRKKLRLSKDQSAILEESFKE---HNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFL 186 (191)
Q Consensus 129 ~~~~RkR~r~s~~Q~~~LE~~F~~---~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~ 186 (191)
...+++|++|+.+|+.+||..|.. ++||+..+|..||.++||+ ||+|||||||+|+|.
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 345667888999999999999999 9999999999999999999 999999999999973
No 63
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.67 E-value=1.3e-17 Score=134.02 Aligned_cols=59 Identities=19% Similarity=0.219 Sum_probs=52.5
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhh
Q 029573 129 GDTSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQ 187 (191)
Q Consensus 129 ~~~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~k 187 (191)
...+|+|+.||..|+.+||..|..++||+..+|.+||.+|||+ ||+|||||||+|+|++
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 3467788889999999999999999999999999999999999 9999999999999985
No 64
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.67 E-value=1.6e-17 Score=117.20 Aligned_cols=51 Identities=18% Similarity=0.144 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhh
Q 029573 138 LSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQF 188 (191)
Q Consensus 138 ~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq 188 (191)
-|++|+.+||+.|..++||+..+|.+||..|||+ ||+|||||||+|+|+-+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 4789999999999999999999999999999999 99999999999999754
No 65
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.9e-17 Score=124.64 Aligned_cols=61 Identities=10% Similarity=0.130 Sum_probs=56.4
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHc---------------------CCC--cceeeCCchhhhHH
Q 029573 129 GDTSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLL---------------------VLR--ENEVKLEKKKKKTF 185 (191)
Q Consensus 129 ~~~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL---------------------~Ls--QVqVWFQNRRaK~K 185 (191)
+..+|+|+.|++.|+.+||+.|..++||+..+|++||..| .|+ +|+|||||||+|+|
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~k 83 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 83 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHH
Confidence 4467888889999999999999999999999999999999 688 99999999999999
Q ss_pred hhhc
Q 029573 186 LQFL 189 (191)
Q Consensus 186 ~kq~ 189 (191)
+++.
T Consensus 84 r~~~ 87 (102)
T 2da6_A 84 FRQK 87 (102)
T ss_dssp HHHH
T ss_pred HhhH
Confidence 8763
No 66
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.67 E-value=2.6e-17 Score=130.78 Aligned_cols=58 Identities=9% Similarity=0.068 Sum_probs=54.7
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHh
Q 029573 129 GDTSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFL 186 (191)
Q Consensus 129 ~~~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~ 186 (191)
+..+|+|+.|+..|+.+||..|..++||+..+|.+||.+|||+ ||+|||||||+|+|+
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 4567778889999999999999999999999999999999999 999999999999986
No 67
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.66 E-value=1.7e-17 Score=134.31 Aligned_cols=60 Identities=18% Similarity=0.117 Sum_probs=49.8
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhh
Q 029573 129 GDTSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQF 188 (191)
Q Consensus 129 ~~~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq 188 (191)
+..+|+|+.|+..|+.+||..|..++||+..+|.+||.+|||+ ||+|||||||+|+|+++
T Consensus 97 ~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 158 (164)
T 2xsd_C 97 GRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMT 158 (164)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSC
T ss_pred ccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhcc
Confidence 4457778889999999999999999999999999999999999 99999999999999865
No 68
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.66 E-value=1.6e-17 Score=124.96 Aligned_cols=61 Identities=10% Similarity=0.083 Sum_probs=52.1
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH------------------cC---CC--cceeeCCchhhhHH
Q 029573 129 GDTSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLL------------------LV---LR--ENEVKLEKKKKKTF 185 (191)
Q Consensus 129 ~~~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~q------------------L~---Ls--QVqVWFQNRRaK~K 185 (191)
...+|+|+.|+..|+.+||..|..++||+..+|++||.. || |+ +|+|||||||+|+|
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k 86 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 86 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHH
Confidence 345677888999999999999999999999999999999 88 99 99999999999999
Q ss_pred hhhc
Q 029573 186 LQFL 189 (191)
Q Consensus 186 ~kq~ 189 (191)
+++.
T Consensus 87 ~k~~ 90 (99)
T 1lfb_A 87 FRHK 90 (99)
T ss_dssp CCC-
T ss_pred Hhch
Confidence 8764
No 69
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.64 E-value=4.7e-17 Score=130.19 Aligned_cols=58 Identities=17% Similarity=0.092 Sum_probs=55.1
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHh
Q 029573 129 GDTSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFL 186 (191)
Q Consensus 129 ~~~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~ 186 (191)
+..+|+|+.|+..|+.+||..|..++||+..+|.+||.+|||+ ||+|||||||+|+|+
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr 153 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKR 153 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccC
Confidence 4567788899999999999999999999999999999999999 999999999999997
No 70
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.63 E-value=5.4e-17 Score=130.09 Aligned_cols=60 Identities=13% Similarity=0.167 Sum_probs=52.6
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhh
Q 029573 129 GDTSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQF 188 (191)
Q Consensus 129 ~~~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq 188 (191)
...+|+|+.||..|+.+||..|..++||+..+|.+||.+|||+ ||+|||||||+|+|+..
T Consensus 95 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 95 NTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 4567888999999999999999999999999999999999999 99999999999998854
No 71
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.61 E-value=2.7e-16 Score=112.00 Aligned_cols=58 Identities=14% Similarity=0.095 Sum_probs=53.2
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHh
Q 029573 129 GDTSRKKLRLSKDQSAILEESFKE-HNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFL 186 (191)
Q Consensus 129 ~~~~RkR~r~s~~Q~~~LE~~F~~-~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~ 186 (191)
...+|.|+.|+.+|+.+|+.+|+. ++||+...|+.||.+|||+ +|+|||||||.--|.
T Consensus 5 ~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~ 65 (71)
T 1wi3_A 5 SSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKH 65 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCS
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecC
Confidence 346888889999999999999999 9999999999999999999 999999999986543
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.60 E-value=2.8e-16 Score=109.76 Aligned_cols=53 Identities=9% Similarity=-0.010 Sum_probs=48.3
Q ss_pred cCCHHHHHHHHHHHh---hcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhhc
Q 029573 137 RLSKDQSAILEESFK---EHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQFL 189 (191)
Q Consensus 137 r~s~~Q~~~LE~~F~---~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq~ 189 (191)
+|+++|+.+||..|. .++||+..+|.+||.++||+ ||+|||||||+|.|++.+
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 61 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 61 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHH
Confidence 699999999999999 99999999999999999999 999999999999998543
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.46 E-value=6.2e-15 Score=122.68 Aligned_cols=58 Identities=9% Similarity=0.081 Sum_probs=51.0
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcC---------------------CC--cceeeCCchhhhHHh
Q 029573 130 DTSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLV---------------------LR--ENEVKLEKKKKKTFL 186 (191)
Q Consensus 130 ~~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~---------------------Ls--QVqVWFQNRRaK~K~ 186 (191)
..+|+|+.|+..|+.+||+.|..++||+..+|++||..|+ |+ +|+|||||||+|.|.
T Consensus 114 k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k~ 193 (194)
T 1ic8_A 114 KGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAF 193 (194)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC-
T ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhhc
Confidence 4567778899999999999999999999999999999999 99 999999999999875
Q ss_pred h
Q 029573 187 Q 187 (191)
Q Consensus 187 k 187 (191)
+
T Consensus 194 ~ 194 (194)
T 1ic8_A 194 R 194 (194)
T ss_dssp -
T ss_pred C
Confidence 3
No 74
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1.8e-13 Score=97.67 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhH
Q 029573 140 KDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKT 184 (191)
Q Consensus 140 ~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~ 184 (191)
++|+.+||.+|..+++|+..++..||..+||. .|+|||||||++.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~ 60 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQ 60 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccccc
Confidence 68999999999999999999999999999999 9999999999854
No 75
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.36 E-value=1.2e-13 Score=120.33 Aligned_cols=53 Identities=17% Similarity=0.155 Sum_probs=49.6
Q ss_pred CCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHH
Q 029573 133 RKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTF 185 (191)
Q Consensus 133 RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K 185 (191)
+.+..++..|+.+||+.|+.++||+..+|.+||++|||+ ||+|||||||+|+|
T Consensus 367 ~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 445569999999999999999999999999999999999 99999999999976
No 76
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.36 E-value=2.6e-13 Score=100.61 Aligned_cols=52 Identities=15% Similarity=0.098 Sum_probs=48.4
Q ss_pred cCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhh
Q 029573 137 RLSKDQSAILEESFKE---HNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQF 188 (191)
Q Consensus 137 r~s~~Q~~~LE~~F~~---~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq 188 (191)
-|++++..+|+..|.. ++||+..+|.+||.++||+ ||++||||||+|.|+..
T Consensus 11 ~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~ 67 (89)
T 2lk2_A 11 MLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDM 67 (89)
T ss_dssp CCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHH
Confidence 3899999999999987 8899999999999999999 99999999999998753
No 77
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.29 E-value=7.9e-13 Score=112.14 Aligned_cols=57 Identities=9% Similarity=0.062 Sum_probs=50.3
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcC---------------------CC--cceeeCCchhhhHH
Q 029573 129 GDTSRKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLV---------------------LR--ENEVKLEKKKKKTF 185 (191)
Q Consensus 129 ~~~~RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~---------------------Ls--QVqVWFQNRRaK~K 185 (191)
...+|.|+.|++.|+.+||..|..++||+..+|++||..|| |+ ||+|||||||++..
T Consensus 140 ~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~~ 219 (221)
T 2h8r_A 140 KKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 219 (221)
T ss_dssp --CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhhh
Confidence 34566777799999999999999999999999999999988 67 99999999999753
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.92 E-value=1.2e-10 Score=73.41 Aligned_cols=18 Identities=6% Similarity=0.115 Sum_probs=16.5
Q ss_pred cceeeCCchhhhHHhhhc
Q 029573 172 ENEVKLEKKKKKTFLQFL 189 (191)
Q Consensus 172 QVqVWFQNRRaK~K~kq~ 189 (191)
||+|||||||||+|++++
T Consensus 2 QVkIWFQNRRaK~Kk~~~ 19 (37)
T 2nzz_A 2 QIKIWFQNRRMKWKKRVF 19 (37)
T ss_dssp CTTTTTTCSHHHHTSSHH
T ss_pred CceeccHHHHHHHHHHhH
Confidence 899999999999999764
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.87 E-value=0.011 Score=41.81 Aligned_cols=41 Identities=17% Similarity=0.084 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCc
Q 029573 139 SKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEK 179 (191)
Q Consensus 139 s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQN 179 (191)
++.-...|+++|+.++.+.......|+.+..|+ ||+-||--
T Consensus 14 ~p~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 14 PPPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCCCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 334456799999999999999999999999999 99999943
No 80
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=70.05 E-value=3 Score=30.26 Aligned_cols=48 Identities=13% Similarity=0.086 Sum_probs=36.0
Q ss_pred CCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhh
Q 029573 133 RKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKK 183 (191)
Q Consensus 133 RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK 183 (191)
++|.+||.++...+-..+..+.... ..+||+.+|++ .|..|..+++..
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred CcceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhhh
Confidence 3577899999987777765554432 34799999999 899998887653
No 81
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=64.76 E-value=2.8 Score=24.83 Aligned_cols=42 Identities=7% Similarity=0.041 Sum_probs=27.5
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhh
Q 029573 137 RLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKK 183 (191)
Q Consensus 137 r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK 183 (191)
.++.++...+...+... . ...+||+.+|++ .|..|+.....+
T Consensus 5 ~~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~~~~~~ 48 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFPASSIK 48 (52)
T ss_dssp SSCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSCTTC--
T ss_pred CCCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHHcccc
Confidence 35666666555555443 2 356899999999 899998765443
No 82
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=63.58 E-value=4.2 Score=25.95 Aligned_cols=44 Identities=9% Similarity=-0.060 Sum_probs=30.3
Q ss_pred CccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCc
Q 029573 135 KLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEK 179 (191)
Q Consensus 135 R~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQN 179 (191)
+..|+.+........+.... .......++|+++||+ +|..|...
T Consensus 3 r~~ys~efK~~~~~~~~~g~-s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRNDN-DCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHCT-TTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHcCC-CcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 45689988877755554432 1111266999999999 89999654
No 83
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=57.97 E-value=6.4 Score=22.66 Aligned_cols=38 Identities=18% Similarity=0.035 Sum_probs=26.2
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCc
Q 029573 137 RLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEK 179 (191)
Q Consensus 137 r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQN 179 (191)
.++.++...+...+.... ...++|+.||++ .|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g~-----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLNV-----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTTC-----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHhh
Confidence 477777755555554332 356899999999 88888743
No 84
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=55.52 E-value=9.3 Score=26.22 Aligned_cols=41 Identities=7% Similarity=-0.128 Sum_probs=29.2
Q ss_pred CCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCC
Q 029573 133 RKKLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLE 178 (191)
Q Consensus 133 RkR~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQ 178 (191)
+++..|+.++....-+.+... . ...++|+++|++ .|..|..
T Consensus 18 ~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 18 RPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp SCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 445679998876555555433 2 356899999999 8999974
No 85
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=42.66 E-value=12 Score=26.87 Aligned_cols=45 Identities=11% Similarity=0.045 Sum_probs=29.9
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhhc
Q 029573 137 RLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQFL 189 (191)
Q Consensus 137 r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq~ 189 (191)
.+++.+..+|. .|-.. ..-.++|..||++ .|+.+. .|++.|.++.
T Consensus 109 ~L~~~~r~v~~-~~~~g-----~s~~EIA~~lgis~~tV~~~~--~ra~~~Lr~~ 155 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRG-----YSYREIATILSKNLKSIDNTI--QRIRKKSEEW 155 (164)
T ss_dssp HSCHHHHHHHH-HHTTT-----CCHHHHHHHHTCCHHHHHHHH--HHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcC-----CCHHHHHHHHCCCHHHHHHHH--HHHHHHHHHH
Confidence 47788888887 33222 2456899999999 777654 5666665543
No 86
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=42.27 E-value=11 Score=25.80 Aligned_cols=45 Identities=18% Similarity=0.170 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhhc
Q 029573 138 LSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQFL 189 (191)
Q Consensus 138 ~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq~ 189 (191)
++..+..+|.-.|-... .-.++|..||++ .|+.+. +|++.|.++.
T Consensus 38 L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l--~ra~~~Lr~~ 84 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRL--HYAVRALRLT 84 (92)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHH--HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHH--HHHHHHHHHH
Confidence 78888888887654333 456899999999 676654 5666665543
No 87
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=41.38 E-value=47 Score=24.43 Aligned_cols=39 Identities=18% Similarity=0.132 Sum_probs=31.1
Q ss_pred CCCccCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHcCCC
Q 029573 133 RKKLRLSKDQSAILEESFKE-----HNTLNPVSIFLLRLLLVLR 171 (191)
Q Consensus 133 RkR~r~s~~Q~~~LE~~F~~-----~~~p~~~~r~~LA~qL~Ls 171 (191)
.++..+|.+|+..|.++|.. ..+++..+-..+.+.||..
T Consensus 5 ~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~ 48 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRV 48 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSC
T ss_pred ccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCC
Confidence 45667999999999999974 3478999888888888876
No 88
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=38.44 E-value=17 Score=27.26 Aligned_cols=47 Identities=15% Similarity=0.083 Sum_probs=34.1
Q ss_pred CCCCCccCCHHHHHHHHHHH-hhcCCCCHHHHHHHHH----Hc--CCC--cceeeCCch
Q 029573 131 TSRKKLRLSKDQSAILEESF-KEHNTLNPVSIFLLRL----LL--VLR--ENEVKLEKK 180 (191)
Q Consensus 131 ~~RkR~r~s~~Q~~~LE~~F-~~~~~p~~~~r~~LA~----qL--~Ls--QVqVWFQNR 180 (191)
++++|.++|.+|...+=..+ ..++..+. .+||+ ++ +++ +|..|..|+
T Consensus 5 ~~~~R~~lT~~qK~~i~~~~~~~~~~~~q---~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 5 GKIKRRAITEHEKRALRHYFFQLQNRSGQ---QDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCCSSSCCCSHHHHHHHHHHHSSSSCCCH---HHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCCcCccCCHHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 36788899999999888888 66665543 35566 77 666 788777553
No 89
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=35.59 E-value=26 Score=22.79 Aligned_cols=48 Identities=10% Similarity=0.003 Sum_probs=31.4
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhh
Q 029573 137 RLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQ 187 (191)
Q Consensus 137 r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~k 187 (191)
.+++.+..+|...|-.... ....-.++|..+|++ .|+.+. +|++.|.+
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~--~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIE--NKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHH--HHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHH--HHHHHHHH
Confidence 3788999999988841100 012345899999999 777654 45555554
No 90
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=35.06 E-value=29 Score=23.70 Aligned_cols=41 Identities=10% Similarity=-0.039 Sum_probs=28.4
Q ss_pred CccCCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHcCCC--cceeeCCc
Q 029573 135 KLRLSKDQSAILEESFKEH-NTLNPVSIFLLRLLLVLR--ENEVKLEK 179 (191)
Q Consensus 135 R~r~s~~Q~~~LE~~F~~~-~~p~~~~r~~LA~qL~Ls--QVqVWFQN 179 (191)
|.+||.++....-..+... . ....++|+.+|++ +|..|...
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g----~s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDG----ASLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGG----SCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC----ChHHHHHHHHCcCHHHHHHHHHH
Confidence 3568888877555555322 2 2366899999999 89999643
No 91
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=34.57 E-value=25 Score=23.86 Aligned_cols=48 Identities=13% Similarity=0.075 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhh
Q 029573 138 LSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQF 188 (191)
Q Consensus 138 ~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq 188 (191)
+++.+..+|...|-.... ....-.++|..+|++ .|+.+. +|++.|.++
T Consensus 19 L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~--~ra~~kLr~ 68 (87)
T 1tty_A 19 LSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIE--VKALRKLRH 68 (87)
T ss_dssp SCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHH--HHHHHHHBT
T ss_pred CCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHH--HHHHHHHHH
Confidence 788899999888741100 112446899999999 777653 566666654
No 92
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=33.13 E-value=0.93 Score=35.17 Aligned_cols=30 Identities=3% Similarity=-0.058 Sum_probs=21.0
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCH
Q 029573 129 GDTSRKKLRLSKDQSAILEESFKEHNTLNP 158 (191)
Q Consensus 129 ~~~~RkR~r~s~~Q~~~LE~~F~~~~~p~~ 158 (191)
.+.+|.|+.|+..|+.+|+..|+.+++|..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 456778888999999999999999998853
No 93
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=31.04 E-value=40 Score=23.37 Aligned_cols=44 Identities=9% Similarity=-0.047 Sum_probs=29.2
Q ss_pred CccCCHHHHHHHHHHH-hhc-CCCC-HHHHHHHHHHcCCC--cceeeCC
Q 029573 135 KLRLSKDQSAILEESF-KEH-NTLN-PVSIFLLRLLLVLR--ENEVKLE 178 (191)
Q Consensus 135 R~r~s~~Q~~~LE~~F-~~~-~~p~-~~~r~~LA~qL~Ls--QVqVWFQ 178 (191)
+.+||.++....-..+ ... .+.+ .....++|..+|++ +|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 4568998886554444 322 1222 14667899999999 8999954
No 94
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=29.30 E-value=27 Score=21.91 Aligned_cols=45 Identities=13% Similarity=-0.099 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhhhHHhhhc
Q 029573 138 LSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKKKTFLQFL 189 (191)
Q Consensus 138 ~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRaK~K~kq~ 189 (191)
+++.+..+|.-.|-... .-.++|..+|++ .|+.+. +|++.|.++.
T Consensus 16 L~~~~r~il~l~~~~g~-----s~~eIA~~lgis~~tv~~~~--~ra~~~l~~~ 62 (70)
T 2o8x_A 16 LTTDQREALLLTQLLGL-----SYADAAAVCGCPVGTIRSRV--ARARDALLAD 62 (70)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHH--HHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHH--HHHHHHHHHH
Confidence 78888888887764332 346899999999 666544 5666665543
No 95
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=24.00 E-value=74 Score=22.00 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=33.1
Q ss_pred CCccCCHHHHHHHHHHHhhc-----CCCCHHHHHHHHHHcCCC----cceeeC
Q 029573 134 KKLRLSKDQSAILEESFKEH-----NTLNPVSIFLLRLLLVLR----ENEVKL 177 (191)
Q Consensus 134 kR~r~s~~Q~~~LE~~F~~~-----~~p~~~~r~~LA~qL~Ls----QVqVWF 177 (191)
+...++.+|...|.++|..- .+++..+-..+.+.+|+. .|+.+|
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~ 78 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVII 78 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 34568899999999998643 478999888888888865 555544
No 96
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=23.29 E-value=48 Score=23.40 Aligned_cols=39 Identities=18% Similarity=0.016 Sum_probs=29.4
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCc
Q 029573 136 LRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEK 179 (191)
Q Consensus 136 ~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQN 179 (191)
..++.++...+...+.... ...++|+.||++ .|..|+..
T Consensus 5 ~~~s~~~r~~i~~~~~~G~-----s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLNV-----SLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTTC-----CHHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHc
Confidence 4578888877777775432 356889999999 89999864
No 97
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=22.09 E-value=36 Score=23.51 Aligned_cols=37 Identities=8% Similarity=0.004 Sum_probs=27.4
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCc
Q 029573 137 RLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEK 179 (191)
Q Consensus 137 r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQN 179 (191)
.++..+..+|.-.++-. ...++|..||++ .|+.+..+
T Consensus 27 ~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r 65 (95)
T 3c57_A 27 GLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSR 65 (95)
T ss_dssp CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHH
Confidence 48999999999864332 236899999999 77765543
No 98
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=21.88 E-value=38 Score=22.96 Aligned_cols=37 Identities=11% Similarity=-0.034 Sum_probs=26.9
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCc
Q 029573 137 RLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEK 179 (191)
Q Consensus 137 r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQN 179 (191)
.++..+..+|.-.+.-.. -.++|..||++ .|+.+..+
T Consensus 29 ~Lt~~e~~vl~l~~~g~s------~~eIA~~l~is~~tV~~~l~r 67 (91)
T 2rnj_A 29 MLTEREMEILLLIAKGYS------NQEIASASHITIKTVKTHVSN 67 (91)
T ss_dssp GCCSHHHHHHHHHHTTCC------TTHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHcCCC------HHHHHHHHCcCHHHHHHHHHH
Confidence 489999999988543322 34899999999 77765543
No 99
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=21.52 E-value=42 Score=24.58 Aligned_cols=36 Identities=6% Similarity=-0.033 Sum_probs=29.5
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCchhh
Q 029573 145 ILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEKKKK 182 (191)
Q Consensus 145 ~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQNRRa 182 (191)
.-.+.|.++.| . .....||+..|++ .|...|.||-.
T Consensus 23 aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~~ 60 (194)
T 2q24_A 23 AAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTREA 60 (194)
T ss_dssp HHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHHH
T ss_pred HHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHHH
Confidence 44555888888 5 7888999999999 89999998754
No 100
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=21.46 E-value=58 Score=23.01 Aligned_cols=39 Identities=15% Similarity=0.031 Sum_probs=28.9
Q ss_pred CccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCC--cceeeCCc
Q 029573 135 KLRLSKDQSAILEESFKEHNTLNPVSIFLLRLLLVLR--ENEVKLEK 179 (191)
Q Consensus 135 R~r~s~~Q~~~LE~~F~~~~~p~~~~r~~LA~qL~Ls--QVqVWFQN 179 (191)
...+|+.+..+|.-.++-. .-.++|..|+++ .|+.+..+
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~r 72 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKS 72 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHH
Confidence 3458999999998765322 237899999999 78776543
No 101
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=20.01 E-value=68 Score=25.19 Aligned_cols=28 Identities=14% Similarity=0.051 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHcCCCcceeeCCchh
Q 029573 138 LSKDQSAILEESFKEH-NTLNPVSIFLLRLLLVLRENEVKLEKKK 181 (191)
Q Consensus 138 ~s~~Q~~~LE~~F~~~-~~p~~~~r~~LA~qL~LsQVqVWFQNRR 181 (191)
+|.+|+..|..+.+.. .| .|..||=||+
T Consensus 59 Lt~~ei~~l~~~i~~~~~~----------------~ip~w~lNr~ 87 (152)
T 3iz6_M 59 LSAEEMDRLMAVVHNPRQF----------------KVPDWFLNRK 87 (152)
T ss_dssp SCHHHHHHHHHHHHSCSSC----------------CCCCCSCSCC
T ss_pred CCHHHHHHHHHHHHhhccc----------------Ccchhhhhhh
Confidence 6777777777666432 22 4888999997
Done!