Query 029575
Match_columns 191
No_of_seqs 231 out of 2060
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 15:07:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029575.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029575hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0910 Thioredoxin-like prote 99.9 1.7E-26 3.7E-31 164.2 10.6 106 79-186 44-149 (150)
2 PF00085 Thioredoxin: Thioredo 99.9 1.3E-23 2.8E-28 143.2 14.7 103 80-184 1-103 (103)
3 cd03065 PDI_b_Calsequestrin_N 99.9 4.8E-24 1E-28 149.2 12.7 105 79-186 10-120 (120)
4 cd03006 PDI_a_EFP1_N PDIa fami 99.9 3.9E-24 8.5E-29 148.5 12.2 101 78-180 9-112 (113)
5 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 5.9E-24 1.3E-28 145.8 11.1 100 80-181 3-104 (104)
6 PRK09381 trxA thioredoxin; Pro 99.9 3.1E-23 6.6E-28 143.4 13.9 107 78-186 3-109 (109)
7 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 1.3E-23 2.8E-28 143.4 11.6 98 80-180 3-100 (101)
8 COG3118 Thioredoxin domain-con 99.9 1.9E-23 4.1E-28 163.3 10.6 106 80-187 25-132 (304)
9 cd02954 DIM1 Dim1 family; Dim1 99.9 1E-22 2.2E-27 140.7 12.8 97 86-184 3-110 (114)
10 cd02956 ybbN ybbN protein fami 99.9 2.1E-22 4.6E-27 136.0 12.5 94 87-182 2-96 (96)
11 cd02996 PDI_a_ERp44 PDIa famil 99.9 1.9E-22 4.1E-27 139.3 11.4 101 79-181 2-108 (108)
12 PHA02278 thioredoxin-like prot 99.9 2.3E-22 5E-27 137.5 11.5 92 86-180 5-100 (103)
13 cd03002 PDI_a_MPD1_like PDI fa 99.9 3.1E-22 6.6E-27 138.2 11.7 103 80-182 2-109 (109)
14 cd02963 TRX_DnaJ TRX domain, D 99.9 2E-22 4.4E-27 139.9 10.6 101 82-184 8-111 (111)
15 cd02994 PDI_a_TMX PDIa family, 99.9 5.9E-22 1.3E-26 135.1 12.1 99 79-183 2-101 (101)
16 PRK10996 thioredoxin 2; Provis 99.9 9.6E-22 2.1E-26 141.8 13.5 103 80-185 37-139 (139)
17 cd02985 TRX_CDSP32 TRX family, 99.9 6.2E-22 1.3E-26 135.7 11.7 95 85-183 3-101 (103)
18 KOG0907 Thioredoxin [Posttrans 99.9 5.5E-22 1.2E-26 135.9 11.2 89 92-184 17-105 (106)
19 cd03005 PDI_a_ERp46 PDIa famil 99.9 1.1E-21 2.3E-26 133.8 11.1 98 80-181 2-102 (102)
20 cd03001 PDI_a_P5 PDIa family, 99.9 2E-21 4.3E-26 132.7 11.8 101 80-181 2-102 (103)
21 PTZ00443 Thioredoxin domain-co 99.9 2.4E-21 5.1E-26 149.3 13.5 109 77-187 29-141 (224)
22 cd02948 TRX_NDPK TRX domain, T 99.9 2.8E-21 6E-26 132.2 12.4 96 84-184 6-102 (102)
23 PLN00410 U5 snRNP protein, DIM 99.9 2.7E-21 5.8E-26 138.4 12.4 106 81-188 6-123 (142)
24 cd02999 PDI_a_ERp44_like PDIa 99.9 1.3E-21 2.8E-26 133.4 10.1 84 94-181 16-100 (100)
25 cd02965 HyaE HyaE family; HyaE 99.9 6.4E-21 1.4E-25 130.9 12.1 97 80-179 12-110 (111)
26 TIGR01068 thioredoxin thioredo 99.9 7.4E-21 1.6E-25 128.9 12.2 100 84-185 2-101 (101)
27 TIGR01126 pdi_dom protein disu 99.9 7.6E-21 1.6E-25 129.3 10.9 100 83-185 1-102 (102)
28 cd02997 PDI_a_PDIR PDIa family 99.8 1.7E-20 3.6E-25 128.2 11.7 99 80-181 2-104 (104)
29 cd02998 PDI_a_ERp38 PDIa famil 99.8 1.4E-20 3E-25 128.6 11.1 101 80-181 2-105 (105)
30 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 1.4E-20 3E-25 128.5 10.9 101 80-181 2-104 (104)
31 cd02950 TxlA TRX-like protein 99.8 3.5E-20 7.6E-25 134.0 13.0 93 93-187 17-112 (142)
32 cd02986 DLP Dim1 family, Dim1- 99.8 3.3E-20 7.2E-25 127.3 12.0 100 86-185 3-111 (114)
33 cd02962 TMX2 TMX2 family; comp 99.8 2.8E-20 6E-25 135.4 12.2 91 78-170 28-126 (152)
34 cd02957 Phd_like Phosducin (Ph 99.8 7.3E-21 1.6E-25 132.5 7.5 89 79-171 5-95 (113)
35 cd02993 PDI_a_APS_reductase PD 99.8 3.9E-20 8.5E-25 128.0 10.8 101 80-181 3-109 (109)
36 cd02949 TRX_NTR TRX domain, no 99.8 8.5E-20 1.8E-24 123.7 12.2 92 89-182 6-97 (97)
37 cd02989 Phd_like_TxnDC9 Phosdu 99.8 9.5E-20 2E-24 126.8 11.4 84 79-164 5-89 (113)
38 cd02984 TRX_PICOT TRX domain, 99.8 1.2E-19 2.6E-24 122.6 11.1 93 86-181 3-96 (97)
39 cd03000 PDI_a_TMX3 PDIa family 99.8 2.3E-19 5.1E-24 123.0 11.8 94 86-184 7-103 (104)
40 cd02975 PfPDO_like_N Pyrococcu 99.8 1.7E-19 3.7E-24 125.6 11.0 97 88-186 15-111 (113)
41 PTZ00051 thioredoxin; Provisio 99.8 2.7E-19 5.9E-24 121.1 11.1 95 80-178 2-96 (98)
42 cd02953 DsbDgamma DsbD gamma f 99.8 1.7E-19 3.7E-24 123.6 9.3 93 87-182 3-104 (104)
43 cd02987 Phd_like_Phd Phosducin 99.8 6.1E-19 1.3E-23 131.6 12.0 103 77-183 61-173 (175)
44 cd02961 PDI_a_family Protein D 99.8 3.9E-19 8.6E-24 119.9 9.6 97 82-181 2-101 (101)
45 cd02992 PDI_a_QSOX PDIa family 99.8 2.1E-18 4.5E-23 120.3 11.2 85 79-163 2-91 (114)
46 cd02951 SoxW SoxW family; SoxW 99.8 3E-18 6.4E-23 121.3 11.7 93 93-187 10-121 (125)
47 KOG0908 Thioredoxin-like prote 99.8 1.6E-18 3.6E-23 132.0 9.9 104 80-187 3-108 (288)
48 TIGR01295 PedC_BrcD bacterioci 99.8 5.1E-18 1.1E-22 119.6 11.5 98 80-182 8-121 (122)
49 TIGR00424 APS_reduc 5'-adenyly 99.8 3.6E-18 7.7E-23 143.6 12.5 107 77-184 350-462 (463)
50 KOG0190 Protein disulfide isom 99.8 1.4E-18 3.1E-23 145.6 10.0 108 77-187 24-134 (493)
51 PTZ00102 disulphide isomerase; 99.8 4.3E-18 9.3E-23 145.3 12.6 110 77-187 356-467 (477)
52 TIGR01130 ER_PDI_fam protein d 99.8 7.5E-18 1.6E-22 142.9 12.6 105 79-186 2-110 (462)
53 PLN02309 5'-adenylylsulfate re 99.8 7.6E-18 1.7E-22 141.6 12.3 106 78-184 345-456 (457)
54 cd02988 Phd_like_VIAF Phosduci 99.8 8.5E-18 1.8E-22 127.1 10.7 103 75-183 79-190 (192)
55 PTZ00102 disulphide isomerase; 99.8 1.5E-17 3.2E-22 142.0 13.4 105 79-187 33-140 (477)
56 cd02947 TRX_family TRX family; 99.7 4.1E-17 8.9E-22 108.0 12.0 91 87-181 2-92 (93)
57 cd03007 PDI_a_ERp29_N PDIa fam 99.7 1.6E-17 3.6E-22 115.1 9.9 99 80-184 3-115 (116)
58 PRK15412 thiol:disulfide inter 99.7 8.5E-17 1.8E-21 121.3 12.9 115 61-188 41-179 (185)
59 TIGR00411 redox_disulf_1 small 99.7 1.1E-16 2.3E-21 104.8 11.0 81 99-185 2-82 (82)
60 cd02982 PDI_b'_family Protein 99.7 8.4E-17 1.8E-21 109.8 9.8 88 96-185 12-103 (103)
61 cd02952 TRP14_like Human TRX-r 99.7 1E-16 2.3E-21 111.9 9.3 93 86-181 10-118 (119)
62 TIGR00385 dsbE periplasmic pro 99.7 3.7E-16 8.1E-21 116.6 12.3 114 60-186 35-172 (173)
63 KOG0190 Protein disulfide isom 99.7 5.6E-17 1.2E-21 136.1 8.2 105 78-184 366-472 (493)
64 TIGR01130 ER_PDI_fam protein d 99.7 2.5E-16 5.4E-21 133.6 11.3 108 77-186 345-455 (462)
65 PTZ00062 glutaredoxin; Provisi 99.7 2.9E-16 6.2E-21 119.4 10.3 90 85-186 6-95 (204)
66 cd02959 ERp19 Endoplasmic reti 99.7 1E-16 2.2E-21 112.2 6.2 99 90-188 13-116 (117)
67 PRK14018 trifunctional thiored 99.7 7E-16 1.5E-20 131.4 12.4 108 62-184 35-172 (521)
68 TIGR02738 TrbB type-F conjugat 99.6 3.3E-15 7.2E-20 109.0 12.2 87 96-185 50-153 (153)
69 KOG0912 Thiol-disulfide isomer 99.6 7.8E-16 1.7E-20 120.5 9.0 102 84-187 2-108 (375)
70 TIGR02187 GlrX_arch Glutaredox 99.6 1.8E-15 3.8E-20 116.7 11.0 90 96-186 19-112 (215)
71 KOG4277 Uncharacterized conser 99.6 2.8E-16 6E-21 123.1 6.4 87 95-184 42-131 (468)
72 cd03010 TlpA_like_DsbE TlpA-li 99.6 2.4E-15 5.3E-20 106.5 10.4 78 96-177 25-126 (127)
73 PRK03147 thiol-disulfide oxido 99.6 5.1E-15 1.1E-19 110.0 12.5 112 60-184 36-171 (173)
74 TIGR02740 TraF-like TraF-like 99.6 1.1E-14 2.5E-19 115.7 11.9 88 96-186 166-265 (271)
75 PF13098 Thioredoxin_2: Thiore 99.6 1.9E-15 4E-20 104.7 5.9 86 94-181 3-112 (112)
76 TIGR02187 GlrX_arch Glutaredox 99.6 1.4E-14 3.1E-19 111.7 10.4 82 96-183 133-214 (215)
77 KOG0191 Thioredoxin/protein di 99.6 1.1E-14 2.4E-19 121.4 10.3 107 80-188 31-137 (383)
78 PF13905 Thioredoxin_8: Thiore 99.6 2.5E-14 5.4E-19 96.2 9.9 67 96-162 1-94 (95)
79 PRK00293 dipZ thiol:disulfide 99.6 1.8E-14 3.8E-19 125.4 11.5 99 86-185 461-570 (571)
80 cd03008 TryX_like_RdCVF Trypar 99.6 3.8E-14 8.2E-19 102.5 11.0 68 96-163 25-126 (146)
81 cd03011 TlpA_like_ScsD_MtbDsbE 99.6 3.5E-14 7.6E-19 99.8 10.5 96 80-180 5-121 (123)
82 PF08534 Redoxin: Redoxin; In 99.6 3.2E-14 6.8E-19 103.0 10.4 102 61-173 2-136 (146)
83 PLN02399 phospholipid hydroper 99.6 8.8E-14 1.9E-18 108.1 13.2 113 61-186 75-235 (236)
84 PLN02919 haloacid dehalogenase 99.6 3.8E-14 8.2E-19 130.7 12.9 89 96-186 420-537 (1057)
85 PTZ00056 glutathione peroxidas 99.6 4.6E-14 1E-18 107.5 11.1 117 59-188 13-181 (199)
86 PRK13728 conjugal transfer pro 99.6 6.9E-14 1.5E-18 104.1 11.5 85 100-187 73-173 (181)
87 TIGR00412 redox_disulf_2 small 99.6 4.2E-14 9.1E-19 91.4 9.1 73 100-181 2-75 (76)
88 PHA02125 thioredoxin-like prot 99.6 5.3E-14 1.1E-18 90.8 9.3 71 100-181 2-73 (75)
89 cd02955 SSP411 TRX domain, SSP 99.5 4.3E-14 9.4E-19 99.6 9.6 95 91-185 10-119 (124)
90 cd03009 TryX_like_TryX_NRX Try 99.5 4.9E-14 1.1E-18 100.3 9.9 68 96-163 18-113 (131)
91 TIGR02661 MauD methylamine deh 99.5 1.9E-13 4E-18 103.5 12.3 113 60-184 47-178 (189)
92 cd02964 TryX_like_family Trypa 99.5 3.8E-14 8.3E-19 101.1 8.0 68 96-163 17-113 (132)
93 cd02967 mauD Methylamine utili 99.5 1.3E-13 2.8E-18 95.6 9.4 68 96-163 21-108 (114)
94 PLN02412 probable glutathione 99.5 4.2E-13 9.1E-18 99.6 11.4 90 96-187 29-166 (167)
95 PRK11509 hydrogenase-1 operon 99.5 1.5E-12 3.3E-17 92.0 12.7 105 81-188 20-127 (132)
96 KOG0191 Thioredoxin/protein di 99.5 3.8E-13 8.2E-18 112.2 11.1 140 44-187 112-254 (383)
97 cd02973 TRX_GRX_like Thioredox 99.5 4.5E-13 9.7E-18 84.3 8.3 62 99-163 2-63 (67)
98 cd02969 PRX_like1 Peroxiredoxi 99.5 1.4E-12 3E-17 97.1 12.0 95 95-189 24-156 (171)
99 cd02966 TlpA_like_family TlpA- 99.5 7.2E-13 1.6E-17 90.8 9.7 81 82-163 6-111 (116)
100 cd03026 AhpF_NTD_C TRX-GRX-lik 99.4 1.1E-12 2.5E-17 87.2 9.3 76 96-178 12-87 (89)
101 TIGR01626 ytfJ_HI0045 conserve 99.4 1.1E-12 2.5E-17 98.1 9.8 93 87-186 51-180 (184)
102 cd02958 UAS UAS family; UAS is 99.4 2.9E-12 6.3E-17 89.2 10.7 93 92-186 13-112 (114)
103 cd03012 TlpA_like_DipZ_like Tl 99.4 1.5E-12 3.3E-17 92.1 9.1 75 95-171 22-125 (126)
104 KOG1731 FAD-dependent sulfhydr 99.4 5.6E-13 1.2E-17 112.4 5.5 109 78-186 39-154 (606)
105 cd00340 GSH_Peroxidase Glutath 99.4 4.7E-12 1E-16 92.5 9.4 82 96-180 22-151 (152)
106 TIGR02540 gpx7 putative glutat 99.3 2E-11 4.3E-16 89.3 11.5 88 96-185 22-153 (153)
107 PF00578 AhpC-TSA: AhpC/TSA fa 99.3 9E-12 1.9E-16 87.4 8.6 92 61-163 1-121 (124)
108 PTZ00256 glutathione peroxidas 99.3 1.4E-11 3.1E-16 92.7 10.0 112 62-186 17-182 (183)
109 PRK00522 tpx lipid hydroperoxi 99.3 2.2E-11 4.9E-16 90.3 9.5 93 59-163 18-144 (167)
110 cd03017 PRX_BCP Peroxiredoxin 99.3 5E-11 1.1E-15 85.4 9.5 84 96-181 23-139 (140)
111 cd02960 AGR Anterior Gradient 99.3 1.5E-11 3.3E-16 86.8 6.3 90 80-172 6-100 (130)
112 cd03014 PRX_Atyp2cys Peroxired 99.2 7.3E-11 1.6E-15 85.1 9.6 107 61-181 2-141 (143)
113 smart00594 UAS UAS domain. 99.2 1.3E-10 2.9E-15 81.8 9.9 95 86-181 17-121 (122)
114 TIGR03137 AhpC peroxiredoxin. 99.2 1.5E-10 3.3E-15 87.4 10.7 114 61-183 4-154 (187)
115 cd03018 PRX_AhpE_like Peroxire 99.2 2E-10 4.4E-15 83.2 10.7 110 61-182 3-148 (149)
116 cd03015 PRX_Typ2cys Peroxiredo 99.2 2.3E-10 4.9E-15 85.3 11.0 113 62-184 2-156 (173)
117 PRK09437 bcp thioredoxin-depen 99.2 2.7E-10 5.8E-15 83.2 10.7 110 60-182 5-150 (154)
118 COG0526 TrxA Thiol-disulfide i 99.2 1.6E-10 3.4E-15 78.8 8.9 87 96-184 32-123 (127)
119 COG4232 Thiol:disulfide interc 99.2 1E-10 2.2E-15 99.7 8.4 101 81-184 457-567 (569)
120 PF13899 Thioredoxin_7: Thiore 99.2 7.1E-11 1.5E-15 77.3 5.8 67 92-159 13-82 (82)
121 cd02970 PRX_like2 Peroxiredoxi 99.1 6.5E-10 1.4E-14 80.3 10.1 43 96-138 23-67 (149)
122 PRK10382 alkyl hydroperoxide r 99.1 8.7E-10 1.9E-14 83.2 11.0 117 60-184 3-155 (187)
123 PRK13190 putative peroxiredoxi 99.1 1.5E-09 3.3E-14 82.9 11.1 114 60-186 3-155 (202)
124 PF13728 TraF: F plasmid trans 99.1 2E-09 4.2E-14 83.0 10.7 83 96-181 120-214 (215)
125 KOG2501 Thioredoxin, nucleored 99.0 1E-09 2.2E-14 79.2 8.0 68 96-163 33-129 (157)
126 COG2143 Thioredoxin-related pr 99.0 3.3E-09 7.2E-14 76.0 9.9 89 93-183 39-147 (182)
127 TIGR02196 GlrX_YruB Glutaredox 99.0 2.4E-09 5.1E-14 67.8 8.2 69 100-182 2-74 (74)
128 PRK15000 peroxidase; Provision 99.0 6.2E-09 1.3E-13 79.4 10.7 117 61-184 4-161 (200)
129 PRK13599 putative peroxiredoxi 99.0 7E-09 1.5E-13 80.0 10.9 114 60-184 3-155 (215)
130 KOG0914 Thioredoxin-like prote 99.0 8.2E-10 1.8E-14 83.2 5.4 90 76-165 122-220 (265)
131 TIGR02200 GlrX_actino Glutared 99.0 4.4E-09 9.6E-14 67.4 8.0 70 100-182 2-76 (77)
132 cd01659 TRX_superfamily Thiore 99.0 4.2E-09 9.2E-14 63.8 7.6 60 100-160 1-63 (69)
133 PRK10606 btuE putative glutath 98.9 6.5E-09 1.4E-13 78.1 9.1 55 81-137 11-66 (183)
134 cd02971 PRX_family Peroxiredox 98.9 1E-08 2.2E-13 73.3 9.7 76 95-172 21-130 (140)
135 PF02114 Phosducin: Phosducin; 98.9 4E-09 8.6E-14 83.5 8.1 104 77-184 124-237 (265)
136 TIGR02739 TraF type-F conjugat 98.9 1.9E-08 4.2E-13 79.0 11.2 88 96-186 150-249 (256)
137 cd02968 SCO SCO (an acronym fo 98.9 8.9E-09 1.9E-13 73.8 8.6 42 96-137 22-68 (142)
138 PRK13189 peroxiredoxin; Provis 98.9 1.7E-08 3.6E-13 78.3 10.6 114 60-185 10-163 (222)
139 PF13192 Thioredoxin_3: Thiore 98.9 2E-08 4.4E-13 64.7 9.1 72 102-182 4-76 (76)
140 cd03016 PRX_1cys Peroxiredoxin 98.9 2.1E-08 4.5E-13 76.7 10.6 111 62-184 2-153 (203)
141 PTZ00137 2-Cys peroxiredoxin; 98.9 2.3E-08 5E-13 78.9 11.0 117 60-184 69-224 (261)
142 KOG0913 Thiol-disulfide isomer 98.9 6E-10 1.3E-14 84.8 1.3 99 79-183 25-124 (248)
143 PF13848 Thioredoxin_6: Thiore 98.9 7.2E-08 1.6E-12 71.9 12.6 130 43-183 51-184 (184)
144 PF06110 DUF953: Eukaryotic pr 98.9 1.2E-08 2.7E-13 71.0 7.5 69 95-163 18-102 (119)
145 PRK13191 putative peroxiredoxi 98.9 4.2E-08 9E-13 75.7 11.0 113 59-184 7-160 (215)
146 PF14595 Thioredoxin_9: Thiore 98.9 4.6E-09 9.9E-14 74.6 5.2 83 96-183 41-127 (129)
147 TIGR02180 GRX_euk Glutaredoxin 98.8 2.5E-08 5.3E-13 65.1 8.1 60 100-163 1-65 (84)
148 PRK13703 conjugal pilus assemb 98.8 7.2E-08 1.6E-12 75.4 11.0 88 96-186 143-242 (248)
149 cd02991 UAS_ETEA UAS family, E 98.8 5.3E-08 1.1E-12 67.9 9.1 96 91-187 12-115 (116)
150 PF03190 Thioredox_DsbH: Prote 98.8 6.4E-08 1.4E-12 70.9 9.5 88 76-163 16-116 (163)
151 KOG1672 ATP binding protein [P 98.8 1.7E-08 3.8E-13 74.8 6.5 93 75-171 63-156 (211)
152 PRK10877 protein disulfide iso 98.7 7.8E-08 1.7E-12 75.0 9.1 81 95-184 106-230 (232)
153 PRK11200 grxA glutaredoxin 1; 98.7 1.5E-07 3.3E-12 61.8 9.2 76 99-185 2-83 (85)
154 PTZ00253 tryparedoxin peroxida 98.7 9.5E-08 2.1E-12 72.8 8.9 116 60-184 7-163 (199)
155 PF01216 Calsequestrin: Calseq 98.6 1E-06 2.2E-11 71.1 12.9 106 78-188 34-147 (383)
156 TIGR03143 AhpF_homolog putativ 98.6 2E-07 4.3E-12 81.5 9.8 123 43-181 431-554 (555)
157 KOG3425 Uncharacterized conser 98.6 1.6E-07 3.5E-12 64.4 6.8 64 96-159 25-104 (128)
158 cd02983 P5_C P5 family, C-term 98.6 1.7E-06 3.6E-11 61.6 11.8 107 79-187 3-117 (130)
159 cd03020 DsbA_DsbC_DsbG DsbA fa 98.6 1.5E-07 3.3E-12 71.5 6.5 76 96-181 77-197 (197)
160 KOG3414 Component of the U4/U6 98.6 1.8E-06 4E-11 59.7 11.0 100 86-185 12-120 (142)
161 PRK11657 dsbG disulfide isomer 98.5 3.5E-07 7.7E-12 72.2 7.7 83 95-182 116-249 (251)
162 PRK15317 alkyl hydroperoxide r 98.5 6.1E-07 1.3E-11 77.8 9.7 127 42-184 70-197 (517)
163 cd02976 NrdH NrdH-redoxin (Nrd 98.5 1E-06 2.2E-11 55.3 8.2 67 100-180 2-72 (73)
164 TIGR02183 GRXA Glutaredoxin, G 98.5 1.1E-06 2.3E-11 58.0 8.3 75 100-185 2-82 (86)
165 cd03023 DsbA_Com1_like DsbA fa 98.5 8E-07 1.7E-11 64.1 8.3 37 96-133 5-41 (154)
166 cd03072 PDI_b'_ERp44 PDIb' fam 98.5 2.3E-06 4.9E-11 59.2 9.9 102 80-186 1-109 (111)
167 COG1225 Bcp Peroxiredoxin [Pos 98.5 1.7E-06 3.7E-11 63.0 9.3 114 59-184 4-155 (157)
168 KOG0911 Glutaredoxin-related p 98.5 1.3E-07 2.8E-12 71.8 3.4 86 95-184 16-101 (227)
169 PF13462 Thioredoxin_4: Thiore 98.3 4.2E-06 9.1E-11 61.1 9.0 81 96-183 12-162 (162)
170 TIGR03140 AhpF alkyl hydropero 98.3 3.5E-06 7.5E-11 73.1 9.9 126 43-184 72-198 (515)
171 cd03019 DsbA_DsbA DsbA family, 98.3 4.2E-06 9E-11 62.1 8.2 39 96-134 15-53 (178)
172 cd03073 PDI_b'_ERp72_ERp57 PDI 98.3 9.9E-06 2.2E-10 56.0 9.4 99 82-185 3-111 (111)
173 cd03419 GRX_GRXh_1_2_like Glut 98.3 7.2E-06 1.6E-10 53.1 8.3 58 100-163 2-64 (82)
174 PF02966 DIM1: Mitosis protein 98.3 6.6E-05 1.4E-09 52.7 13.2 98 88-186 11-118 (133)
175 TIGR02194 GlrX_NrdH Glutaredox 98.2 8.1E-06 1.7E-10 51.8 7.4 67 100-179 1-70 (72)
176 PF00462 Glutaredoxin: Glutare 98.2 9.1E-06 2E-10 49.6 7.2 55 100-162 1-59 (60)
177 TIGR02190 GlrX-dom Glutaredoxi 98.2 1.7E-05 3.7E-10 51.3 8.6 60 96-163 6-68 (79)
178 PRK10954 periplasmic protein d 98.2 7.9E-06 1.7E-10 62.6 7.6 40 96-135 37-79 (207)
179 cd02981 PDI_b_family Protein D 98.2 2.9E-05 6.3E-10 51.9 9.2 94 81-183 2-96 (97)
180 TIGR03143 AhpF_homolog putativ 98.1 2.4E-05 5.1E-10 68.6 10.4 90 96-187 366-456 (555)
181 PRK10329 glutaredoxin-like pro 98.1 6.2E-05 1.4E-09 49.0 9.9 72 100-185 3-77 (81)
182 PF05768 DUF836: Glutaredoxin- 98.1 8.6E-06 1.9E-10 53.0 5.6 80 100-182 2-81 (81)
183 KOG2603 Oligosaccharyltransfer 98.1 4.4E-05 9.4E-10 60.9 10.2 110 75-185 37-166 (331)
184 cd02066 GRX_family Glutaredoxi 98.0 2.7E-05 5.8E-10 48.5 6.9 56 100-163 2-61 (72)
185 cd03029 GRX_hybridPRX5 Glutare 98.0 9E-05 2E-09 46.8 8.8 66 100-181 3-71 (72)
186 cd03418 GRX_GRXb_1_3_like Glut 98.0 7.6E-05 1.6E-09 47.4 8.1 56 100-163 2-62 (75)
187 PHA03050 glutaredoxin; Provisi 97.9 2.8E-05 6.2E-10 53.4 6.0 59 100-163 15-80 (108)
188 TIGR02181 GRX_bact Glutaredoxi 97.9 5.9E-05 1.3E-09 48.5 6.9 56 100-163 1-60 (79)
189 TIGR02189 GlrX-like_plant Glut 97.9 7.4E-05 1.6E-09 50.5 6.7 56 100-163 10-72 (99)
190 PF11009 DUF2847: Protein of u 97.8 0.00019 4.2E-09 48.7 8.5 91 86-177 8-104 (105)
191 PF07449 HyaE: Hydrogenase-1 e 97.8 0.00012 2.7E-09 49.9 7.6 90 80-173 11-103 (107)
192 COG0695 GrxC Glutaredoxin and 97.8 0.00016 3.5E-09 46.9 7.8 56 100-163 3-64 (80)
193 cd03027 GRX_DEP Glutaredoxin ( 97.8 0.00017 3.8E-09 45.6 7.6 56 100-163 3-62 (73)
194 cd02972 DsbA_family DsbA famil 97.8 0.00011 2.3E-09 48.4 6.7 58 100-157 1-90 (98)
195 KOG3170 Conserved phosducin-li 97.7 0.00017 3.6E-09 54.2 7.5 103 76-184 89-200 (240)
196 PF07912 ERp29_N: ERp29, N-ter 97.7 0.0023 5.1E-08 44.5 12.0 101 80-184 6-118 (126)
197 PRK10638 glutaredoxin 3; Provi 97.4 0.001 2.2E-08 43.2 7.2 56 100-163 4-63 (83)
198 cd03013 PRX5_like Peroxiredoxi 97.4 0.00047 1E-08 50.4 6.1 70 62-137 2-74 (155)
199 PF13743 Thioredoxin_5: Thiore 97.4 0.00035 7.6E-09 52.2 5.2 33 102-134 2-34 (176)
200 TIGR00365 monothiol glutaredox 97.4 0.0011 2.4E-08 44.6 7.1 50 106-163 25-78 (97)
201 cd03028 GRX_PICOT_like Glutare 97.3 0.0011 2.3E-08 43.9 6.5 50 106-163 21-74 (90)
202 KOG3171 Conserved phosducin-li 97.2 0.0016 3.5E-08 49.5 6.8 84 79-164 139-225 (273)
203 KOG1752 Glutaredoxin and relat 97.2 0.0026 5.6E-08 43.3 7.0 58 100-163 16-78 (104)
204 PF00837 T4_deiodinase: Iodoth 97.1 0.005 1.1E-07 47.8 9.0 55 80-134 84-140 (237)
205 PRK10824 glutaredoxin-4; Provi 97.1 0.0022 4.7E-08 44.5 6.3 50 106-163 28-81 (115)
206 PTZ00062 glutaredoxin; Provisi 97.0 0.0041 8.9E-08 47.6 7.8 51 105-163 125-179 (204)
207 COG1651 DsbG Protein-disulfide 97.0 0.0039 8.5E-08 48.7 7.9 37 142-185 207-243 (244)
208 PRK12759 bifunctional gluaredo 97.0 0.0038 8.2E-08 52.8 7.9 56 100-163 4-71 (410)
209 PF13848 Thioredoxin_6: Thiore 96.9 0.013 2.8E-07 43.3 9.9 68 113-185 7-75 (184)
210 cd02974 AhpF_NTD_N Alkyl hydro 96.6 0.031 6.8E-07 37.3 8.6 76 96-185 19-94 (94)
211 cd03069 PDI_b_ERp57 PDIb famil 96.6 0.041 8.8E-07 37.3 9.2 96 81-184 3-103 (104)
212 KOG0855 Alkyl hydroperoxide re 96.5 0.0049 1.1E-07 45.1 4.7 69 59-137 63-133 (211)
213 cd03066 PDI_b_Calsequestrin_mi 96.5 0.045 9.7E-07 36.9 9.3 96 80-184 2-100 (102)
214 COG1331 Highly conserved prote 96.4 0.019 4.2E-07 50.8 8.1 79 84-163 32-122 (667)
215 COG0450 AhpC Peroxiredoxin [Po 96.3 0.072 1.6E-06 40.1 10.0 118 60-184 4-160 (194)
216 cd03067 PDI_b_PDIR_N PDIb fami 96.2 0.065 1.4E-06 36.0 8.0 97 82-182 5-109 (112)
217 PF01323 DSBA: DSBA-like thior 96.0 0.11 2.5E-06 38.6 9.9 36 99-134 1-37 (193)
218 cd03074 PDI_b'_Calsequestrin_C 95.8 0.26 5.7E-06 33.5 9.7 105 80-185 3-120 (120)
219 COG1999 Uncharacterized protei 95.8 0.24 5.1E-06 38.0 11.0 90 96-187 67-206 (207)
220 COG0386 BtuE Glutathione perox 95.7 0.28 6.2E-06 35.6 10.2 103 80-186 10-161 (162)
221 cd03031 GRX_GRX_like Glutaredo 95.7 0.071 1.5E-06 38.6 7.2 56 100-163 2-71 (147)
222 PRK15317 alkyl hydroperoxide r 95.5 0.12 2.5E-06 45.1 9.3 78 96-186 18-95 (517)
223 KOG2640 Thioredoxin [Function 95.4 0.0057 1.2E-07 49.1 0.8 87 96-186 76-163 (319)
224 TIGR03140 AhpF alkyl hydropero 95.1 0.19 4.1E-06 43.9 9.3 79 96-186 18-96 (515)
225 KOG2792 Putative cytochrome C 95.0 0.14 3.1E-06 40.2 7.3 89 96-187 139-277 (280)
226 PF02630 SCO1-SenC: SCO1/SenC; 94.8 0.24 5.3E-06 36.8 8.0 57 81-138 38-98 (174)
227 cd02978 KaiB_like KaiB-like fa 94.6 0.19 4E-06 31.8 5.9 60 99-158 3-63 (72)
228 KOG2507 Ubiquitin regulatory p 94.6 0.4 8.6E-06 40.4 9.3 89 95-185 17-111 (506)
229 COG2761 FrnE Predicted dithiol 94.6 0.42 9.1E-06 37.0 8.9 40 142-187 176-215 (225)
230 TIGR02654 circ_KaiB circadian 93.7 0.41 9E-06 31.4 6.3 76 97-175 3-79 (87)
231 PRK09301 circadian clock prote 93.6 0.41 9E-06 32.4 6.3 76 96-174 5-81 (103)
232 cd03040 GST_N_mPGES2 GST_N fam 93.4 0.73 1.6E-05 28.8 7.2 73 100-185 2-76 (77)
233 cd03068 PDI_b_ERp72 PDIb famil 93.3 1.6 3.6E-05 29.6 9.2 97 80-183 2-106 (107)
234 cd03037 GST_N_GRX2 GST_N famil 93.2 0.68 1.5E-05 28.5 6.6 57 102-163 3-59 (71)
235 cd03041 GST_N_2GST_N GST_N fam 92.8 1.3 2.7E-05 27.9 7.6 69 101-183 3-75 (77)
236 COG3019 Predicted metal-bindin 92.4 1.7 3.7E-05 31.1 8.2 75 97-184 25-103 (149)
237 cd02977 ArsC_family Arsenate R 92.3 0.17 3.6E-06 34.2 3.2 78 101-184 2-86 (105)
238 COG4545 Glutaredoxin-related p 92.3 0.37 8.1E-06 30.5 4.3 56 101-163 5-76 (85)
239 cd03060 GST_N_Omega_like GST_N 92.2 0.98 2.1E-05 27.8 6.4 58 101-163 2-60 (71)
240 TIGR01617 arsC_related transcr 92.0 0.34 7.4E-06 33.5 4.4 34 101-140 2-35 (117)
241 COG3634 AhpF Alkyl hydroperoxi 91.4 0.75 1.6E-05 38.2 6.4 81 96-183 116-196 (520)
242 PF00255 GSHPx: Glutathione pe 90.9 0.94 2E-05 31.0 5.6 57 80-138 6-63 (108)
243 cd03036 ArsC_like Arsenate Red 90.7 0.4 8.7E-06 32.8 3.7 52 101-158 2-57 (111)
244 cd03059 GST_N_SspA GST_N famil 90.4 1.5 3.3E-05 26.8 6.0 56 101-162 2-58 (73)
245 cd02990 UAS_FAF1 UAS family, F 90.3 5.1 0.00011 28.6 11.3 91 95-186 20-134 (136)
246 PF06053 DUF929: Domain of unk 90.2 0.89 1.9E-05 35.9 5.7 57 94-158 56-113 (249)
247 PHA03075 glutaredoxin-like pro 89.6 0.57 1.2E-05 32.3 3.6 30 97-126 2-31 (123)
248 PRK01655 spxA transcriptional 89.6 0.67 1.4E-05 32.8 4.2 34 100-139 2-35 (131)
249 cd00570 GST_N_family Glutathio 89.4 0.59 1.3E-05 27.8 3.4 57 101-163 2-60 (71)
250 KOG1651 Glutathione peroxidase 89.0 3.8 8.2E-05 30.2 7.7 57 80-137 19-76 (171)
251 COG3531 Predicted protein-disu 88.7 1.1 2.4E-05 34.0 4.9 44 141-186 165-210 (212)
252 TIGR02742 TrbC_Ftype type-F co 88.6 1.1 2.3E-05 31.8 4.6 42 139-182 60-112 (130)
253 PF13417 GST_N_3: Glutathione 88.3 4.4 9.6E-05 25.2 9.0 71 102-186 1-72 (75)
254 PF09673 TrbC_Ftype: Type-F co 87.9 1.8 3.9E-05 29.8 5.3 22 138-159 59-80 (113)
255 cd03051 GST_N_GTT2_like GST_N 87.8 0.76 1.6E-05 28.2 3.2 57 101-162 2-62 (74)
256 cd03032 ArsC_Spx Arsenate Redu 86.2 1.9 4.2E-05 29.6 4.7 34 100-139 2-35 (115)
257 PF06953 ArsD: Arsenical resis 85.9 5.6 0.00012 27.9 6.9 54 128-186 40-103 (123)
258 cd03025 DsbA_FrnE_like DsbA fa 85.6 1.8 4E-05 32.1 4.8 30 100-129 3-32 (193)
259 PF09822 ABC_transp_aux: ABC-t 85.4 16 0.00036 28.8 11.0 70 80-150 9-88 (271)
260 PF09695 YtfJ_HI0045: Bacteria 85.3 13 0.00027 27.3 9.4 40 141-182 114-155 (160)
261 cd03035 ArsC_Yffb Arsenate Red 85.2 0.83 1.8E-05 31.0 2.4 33 101-139 2-34 (105)
262 COG2077 Tpx Peroxiredoxin [Pos 84.7 3.3 7.1E-05 30.1 5.3 70 57-138 16-86 (158)
263 PF04134 DUF393: Protein of un 84.1 1.5 3.3E-05 29.8 3.4 57 103-161 2-61 (114)
264 cd03045 GST_N_Delta_Epsilon GS 83.8 7.6 0.00017 23.7 6.7 56 101-162 2-61 (74)
265 PF01216 Calsequestrin: Calseq 83.8 24 0.00052 29.4 11.4 109 77-186 248-369 (383)
266 PRK12559 transcriptional regul 82.5 2.1 4.6E-05 30.3 3.7 32 100-137 2-33 (131)
267 PF07689 KaiB: KaiB domain; I 82.1 0.55 1.2E-05 30.5 0.5 54 103-156 3-57 (82)
268 PF04592 SelP_N: Selenoprotein 81.0 24 0.00052 27.6 9.2 56 80-137 12-71 (238)
269 KOG0852 Alkyl hydroperoxide re 80.7 21 0.00046 26.7 8.4 88 96-184 33-160 (196)
270 cd03055 GST_N_Omega GST_N fami 80.2 11 0.00023 24.3 6.3 59 100-163 19-78 (89)
271 cd03024 DsbA_FrnE DsbA family, 78.7 4 8.6E-05 30.5 4.4 37 140-182 165-201 (201)
272 KOG0854 Alkyl hydroperoxide re 78.3 5.1 0.00011 30.0 4.5 66 61-138 8-76 (224)
273 KOG4277 Uncharacterized conser 78.1 24 0.00051 28.9 8.5 119 43-183 109-229 (468)
274 PF06764 DUF1223: Protein of u 76.4 31 0.00067 26.4 8.6 79 100-187 2-100 (202)
275 cd03022 DsbA_HCCA_Iso DsbA fam 76.0 5.1 0.00011 29.6 4.2 34 141-181 158-191 (192)
276 cd03061 GST_N_CLIC GST_N famil 75.0 21 0.00045 23.5 7.8 67 105-185 19-86 (91)
277 KOG1364 Predicted ubiquitin re 72.0 7.1 0.00015 32.2 4.3 57 129-187 133-191 (356)
278 PRK13344 spxA transcriptional 71.3 4.7 0.0001 28.5 2.9 32 100-137 2-33 (132)
279 PRK13730 conjugal transfer pil 71.1 9.9 0.00022 29.1 4.6 42 139-183 151-192 (212)
280 PF13778 DUF4174: Domain of un 69.6 34 0.00073 23.6 8.8 85 98-184 11-111 (118)
281 PF08806 Sep15_SelM: Sep15/Sel 69.0 8.4 0.00018 24.7 3.4 35 150-185 41-76 (78)
282 COG3011 Predicted thiol-disulf 67.7 31 0.00066 24.7 6.3 66 96-163 6-73 (137)
283 KOG1422 Intracellular Cl- chan 65.2 47 0.001 25.6 7.2 67 107-187 20-87 (221)
284 cd03025 DsbA_FrnE_like DsbA fa 61.4 15 0.00033 27.0 4.1 21 141-161 160-180 (193)
285 cd03056 GST_N_4 GST_N family, 59.9 8.7 0.00019 23.2 2.2 57 101-163 2-62 (73)
286 cd03033 ArsC_15kD Arsenate Red 58.8 12 0.00027 25.6 3.0 21 100-120 2-22 (113)
287 COG0821 gcpE 1-hydroxy-2-methy 55.8 26 0.00056 29.0 4.7 80 107-188 263-354 (361)
288 cd03052 GST_N_GDAP1 GST_N fami 53.1 52 0.0011 20.2 7.5 57 101-163 2-62 (73)
289 KOG2244 Highly conserved prote 51.2 13 0.00028 32.8 2.4 74 86-159 102-186 (786)
290 KOG0912 Thiol-disulfide isomer 50.9 67 0.0015 26.4 6.2 117 48-185 189-319 (375)
291 COG5494 Predicted thioredoxin/ 49.6 95 0.0021 24.1 6.5 74 100-183 13-86 (265)
292 cd03022 DsbA_HCCA_Iso DsbA fam 49.4 35 0.00077 25.0 4.4 32 102-133 3-34 (192)
293 cd03049 GST_N_3 GST_N family, 48.6 45 0.00098 20.1 4.2 59 102-163 3-62 (73)
294 COG4604 CeuD ABC-type enteroch 47.0 90 0.0019 24.3 6.1 49 108-164 168-216 (252)
295 COG5429 Uncharacterized secret 46.8 79 0.0017 24.9 5.8 82 97-185 42-141 (261)
296 cd03030 GRX_SH3BGR Glutaredoxi 45.2 87 0.0019 20.6 5.6 58 104-163 5-71 (92)
297 COG1393 ArsC Arsenate reductas 45.0 27 0.00058 24.2 2.9 22 100-121 3-24 (117)
298 PF07511 DUF1525: Protein of u 42.0 67 0.0015 22.2 4.4 36 143-184 76-111 (114)
299 PRK10387 glutaredoxin 2; Provi 41.8 1.4E+02 0.0031 22.0 8.1 56 102-162 3-58 (210)
300 cd03034 ArsC_ArsC Arsenate Red 39.7 30 0.00065 23.5 2.5 32 101-138 2-33 (112)
301 TIGR00014 arsC arsenate reduct 38.6 32 0.00069 23.5 2.5 32 101-138 2-33 (114)
302 COG0278 Glutaredoxin-related p 38.2 28 0.0006 23.6 2.0 54 105-163 27-82 (105)
303 COG3411 Ferredoxin [Energy pro 37.6 76 0.0017 19.5 3.7 29 152-186 18-46 (64)
304 cd03021 DsbA_GSTK DsbA family, 36.5 61 0.0013 24.4 4.0 38 142-181 171-208 (209)
305 cd03038 GST_N_etherase_LigE GS 36.0 80 0.0017 19.7 4.0 65 105-183 13-81 (84)
306 PF11287 DUF3088: Protein of u 35.9 66 0.0014 22.1 3.6 50 108-158 24-76 (112)
307 KOG2868 Decapping enzyme compl 35.6 1.1E+02 0.0025 25.1 5.4 37 150-186 94-131 (335)
308 PF00352 TBP: Transcription fa 35.5 65 0.0014 20.7 3.4 77 99-187 5-81 (86)
309 PRK00366 ispG 4-hydroxy-3-meth 35.1 75 0.0016 26.6 4.4 79 105-185 271-357 (360)
310 PF05988 DUF899: Bacterial pro 34.7 2.1E+02 0.0047 22.0 7.3 59 105-163 82-168 (211)
311 TIGR03757 conj_TIGR03757 integ 34.7 1E+02 0.0023 21.2 4.4 34 143-182 77-110 (113)
312 KOG3384 Selenoprotein [General 34.5 64 0.0014 23.1 3.4 37 151-187 117-153 (154)
313 PF07700 HNOB: Heme NO binding 34.4 1.2E+02 0.0026 22.2 5.1 42 96-137 127-169 (171)
314 cd00307 RuBisCO_small_like Rib 33.4 54 0.0012 21.3 2.7 35 103-137 28-71 (84)
315 cd03024 DsbA_FrnE DsbA family, 33.1 77 0.0017 23.4 4.0 25 102-126 3-27 (201)
316 KOG4079 Putative mitochondrial 33.0 47 0.001 23.7 2.5 38 149-188 72-110 (169)
317 PRK09481 sspA stringent starva 32.6 2.1E+02 0.0046 21.3 8.4 61 97-163 8-69 (211)
318 PF07315 DUF1462: Protein of u 31.3 1.6E+02 0.0034 19.5 8.5 69 107-181 8-92 (93)
319 TIGR02182 GRXB Glutaredoxin, G 31.3 2.3E+02 0.0049 21.3 7.8 55 103-162 3-57 (209)
320 cd03058 GST_N_Tau GST_N family 30.6 1.3E+02 0.0027 18.1 8.1 55 102-162 3-59 (74)
321 cd03053 GST_N_Phi GST_N family 30.4 1.3E+02 0.0028 18.1 8.4 58 100-163 2-63 (76)
322 TIGR02652 conserved hypothetic 29.9 19 0.00041 25.8 0.2 13 107-119 11-23 (163)
323 PF09654 DUF2396: Protein of u 29.7 19 0.0004 25.8 0.1 13 107-119 8-20 (161)
324 PRK10853 putative reductase; P 28.8 62 0.0013 22.3 2.6 32 100-137 2-33 (118)
325 COG2101 SPT15 TATA-box binding 28.6 1.3E+02 0.0029 22.5 4.4 32 152-187 54-85 (185)
326 TIGR02743 TraW type-F conjugat 28.6 90 0.002 23.9 3.7 40 118-163 158-197 (202)
327 PF12617 LdpA_C: Iron-Sulfur b 28.1 2.6E+02 0.0057 21.1 5.9 70 113-185 22-97 (183)
328 TIGR01616 nitro_assoc nitrogen 27.5 85 0.0018 22.0 3.2 22 100-121 3-24 (126)
329 PRK10026 arsenate reductase; P 27.2 78 0.0017 22.7 3.0 22 100-121 4-25 (141)
330 PF10865 DUF2703: Domain of un 26.8 1.9E+02 0.004 20.2 4.7 54 105-163 12-72 (120)
331 PF14424 Toxin-deaminase: The 26.5 1.3E+02 0.0029 21.2 4.0 24 101-127 99-124 (133)
332 PRK13738 conjugal transfer pil 26.4 1.1E+02 0.0025 23.5 3.9 27 137-163 170-197 (209)
333 COG1651 DsbG Protein-disulfide 25.5 47 0.001 25.6 1.7 27 96-122 84-110 (244)
334 COG5309 Exo-beta-1,3-glucanase 25.4 71 0.0015 25.7 2.7 83 96-186 74-163 (305)
335 PF05626 DUF790: Protein of un 24.9 1.5E+02 0.0033 25.1 4.7 37 149-186 301-337 (379)
336 PF03227 GILT: Gamma interfero 24.2 2.2E+02 0.0048 19.0 4.7 21 100-120 3-24 (108)
337 cd03071 PDI_b'_NRX PDIb' famil 24.2 2.5E+02 0.0053 19.3 8.0 89 96-185 14-115 (116)
338 cd03062 TRX_Fd_Sucrase TRX-lik 23.9 1.5E+02 0.0032 19.6 3.7 67 106-187 14-85 (97)
339 PF06616 BsuBI_PstI_RE: BsuBI/ 23.5 4.2E+02 0.0091 21.8 6.8 73 108-180 161-248 (306)
340 PF07293 DUF1450: Protein of u 23.4 1.9E+02 0.0042 18.4 3.9 60 115-189 17-76 (78)
341 PF02645 DegV: Uncharacterised 23.4 1.5E+02 0.0031 23.7 4.2 45 136-184 10-54 (280)
342 KOG2990 C2C2-type Zn-finger pr 22.1 63 0.0014 26.1 1.8 21 96-116 40-63 (317)
343 PF04551 GcpE: GcpE protein; 22.1 1.1E+02 0.0024 25.6 3.3 75 108-184 271-358 (359)
344 cd03054 GST_N_Metaxin GST_N fa 21.9 69 0.0015 19.3 1.7 15 106-120 14-28 (72)
345 TIGR03759 conj_TIGR03759 integ 21.7 2.6E+02 0.0056 21.4 4.9 37 96-136 108-144 (200)
346 PF10589 NADH_4Fe-4S: NADH-ubi 21.4 54 0.0012 18.5 1.0 20 107-126 18-37 (46)
347 cd03021 DsbA_GSTK DsbA family, 21.2 2.5E+02 0.0055 21.0 5.0 35 100-134 3-37 (209)
348 PF03960 ArsC: ArsC family; I 21.0 87 0.0019 21.0 2.2 73 103-184 1-83 (110)
349 TIGR00762 DegV EDD domain prot 20.9 2.8E+02 0.0061 21.9 5.4 44 136-183 9-52 (275)
350 PRK13669 hypothetical protein; 20.3 2.3E+02 0.0049 18.2 3.7 56 118-188 20-75 (78)
351 PF13409 GST_N_2: Glutathione 20.3 2.1E+02 0.0046 17.1 5.4 64 107-183 1-69 (70)
No 1
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.7e-26 Score=164.18 Aligned_cols=106 Identities=40% Similarity=0.829 Sum_probs=101.6
Q ss_pred CcEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEE
Q 029575 79 GITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFK 158 (191)
Q Consensus 79 ~v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~ 158 (191)
.+..++..+|+..+.+.+.+|+|+|||+||+||+.+.|.++++..+|.+++.|++||.|++.+++.+|+|..+||+++|+
T Consensus 44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfk 123 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVFK 123 (150)
T ss_pred cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEEE
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEeeeeecCCCCHHHHHHHHHHHhh
Q 029575 159 NGQEVPESRREGAITKLKLKEYIDTLLD 186 (191)
Q Consensus 159 ~g~~~~~~~~~g~~~~~~l~~~i~~~l~ 186 (191)
+|+++ .+..|..+.+.+.++|+++++
T Consensus 124 nGe~~--d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 124 NGEKV--DRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred CCEEe--eeecccCCHHHHHHHHHHHhc
Confidence 99999 589999999999999999885
No 2
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.92 E-value=1.3e-23 Score=143.20 Aligned_cols=103 Identities=39% Similarity=0.735 Sum_probs=97.7
Q ss_pred cEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEEC
Q 029575 80 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKN 159 (191)
Q Consensus 80 v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~ 159 (191)
|..+|.++|...+.+.++.++|+||++||++|+.+.|.|+++++.+++++.|+.||++++..++++|+|.++|++++|++
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~ 80 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKN 80 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEET
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEEC
Confidence 57899999999998878999999999999999999999999999998789999999999999999999999999999999
Q ss_pred CeEEeeeeecCCCCHHHHHHHHHHH
Q 029575 160 GQEVPESRREGAITKLKLKEYIDTL 184 (191)
Q Consensus 160 g~~~~~~~~~g~~~~~~l~~~i~~~ 184 (191)
|+.. .++.|..+.+.|.+||+++
T Consensus 81 g~~~--~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 81 GKEV--KRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp TEEE--EEEESSSSHHHHHHHHHHH
T ss_pred CcEE--EEEECCCCHHHHHHHHHcC
Confidence 9999 4899999999999999874
No 3
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.92 E-value=4.8e-24 Score=149.22 Aligned_cols=105 Identities=12% Similarity=0.201 Sum_probs=97.9
Q ss_pred CcEEcCCCChhhHHhcCCCcEEEEEEcCCChh--hh--chHHHHHHHHHHh--CCCeEEEEEECCCCHHHHHHcCCCccc
Q 029575 79 GITEITESEFPNTVLKSERPVLVEFVANWCGP--CR--LVAPAVEWLAQEY--GDRLTVVKIDHDANPQLIEEYKVYGLP 152 (191)
Q Consensus 79 ~v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~--C~--~~~p~l~~l~~~~--~~~v~~~~vd~d~~~~~~~~~~v~~~P 152 (191)
.|.+||+++|.+.+.+++.++|++||++||++ |+ .+.|.+.+++.++ .+++.|++||+|++++++++|+|+++|
T Consensus 10 ~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~iP 89 (120)
T cd03065 10 RVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEED 89 (120)
T ss_pred ceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCcccc
Confidence 58999999999999998899999999999987 99 8899999999998 777999999999999999999999999
Q ss_pred EEEEEECCeEEeeeeecCCCCHHHHHHHHHHHhh
Q 029575 153 TLILFKNGQEVPESRREGAITKLKLKEYIDTLLD 186 (191)
Q Consensus 153 t~~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~l~ 186 (191)
|+++|++|+.+ . +.|..+.+.|.+||+++++
T Consensus 90 Tl~lfk~G~~v--~-~~G~~~~~~l~~~l~~~~~ 120 (120)
T cd03065 90 SIYVFKDDEVI--E-YDGEFAADTLVEFLLDLIE 120 (120)
T ss_pred EEEEEECCEEE--E-eeCCCCHHHHHHHHHHHhC
Confidence 99999999976 4 9999999999999998763
No 4
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.92 E-value=3.9e-24 Score=148.54 Aligned_cols=101 Identities=14% Similarity=0.232 Sum_probs=91.9
Q ss_pred CCcEEcCCCChhhH--HhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHH-HHcCCCcccEE
Q 029575 78 SGITEITESEFPNT--VLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLI-EEYKVYGLPTL 154 (191)
Q Consensus 78 ~~v~~l~~~~~~~~--~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~-~~~~v~~~Pt~ 154 (191)
+.|.+|++++|+.. +.+.+++++|+||++||++|+.+.|.|+++++.+++.+.|++||++++.+++ ++|+|.++||+
T Consensus 9 ~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl 88 (113)
T cd03006 9 SPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVI 88 (113)
T ss_pred CCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEE
Confidence 34899999999976 3466899999999999999999999999999999888999999999999998 58999999999
Q ss_pred EEEECCeEEeeeeecCCCCHHHHHHH
Q 029575 155 ILFKNGQEVPESRREGAITKLKLKEY 180 (191)
Q Consensus 155 ~~~~~g~~~~~~~~~g~~~~~~l~~~ 180 (191)
++|++|+.. ..+.|..+.+.|..|
T Consensus 89 ~lf~~g~~~--~~y~G~~~~~~i~~~ 112 (113)
T cd03006 89 HLYYRSRGP--IEYKGPMRAPYMEKF 112 (113)
T ss_pred EEEECCccc--eEEeCCCCHHHHHhh
Confidence 999998876 589999999999876
No 5
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.91 E-value=5.9e-24 Score=145.78 Aligned_cols=100 Identities=26% Similarity=0.541 Sum_probs=92.1
Q ss_pred cEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEEC
Q 029575 80 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKN 159 (191)
Q Consensus 80 v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~ 159 (191)
+.+++.++|...+.+.+++++|+||++||++|+.+.|.|+++++++.+.+.|+.||++++++++++|+|.++||+++|++
T Consensus 3 v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~ 82 (104)
T cd03004 3 VITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYPG 82 (104)
T ss_pred ceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEcC
Confidence 68899999999888878899999999999999999999999999998789999999999999999999999999999998
Q ss_pred C-eEEeeeeecCCCC-HHHHHHHH
Q 029575 160 G-QEVPESRREGAIT-KLKLKEYI 181 (191)
Q Consensus 160 g-~~~~~~~~~g~~~-~~~l~~~i 181 (191)
| +.. ..+.|..+ .++|.+||
T Consensus 83 g~~~~--~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 83 NASKY--HSYNGWHRDADSILEFI 104 (104)
T ss_pred CCCCc--eEccCCCCCHHHHHhhC
Confidence 7 665 68999887 99888875
No 6
>PRK09381 trxA thioredoxin; Provisional
Probab=99.91 E-value=3.1e-23 Score=143.44 Aligned_cols=107 Identities=42% Similarity=0.842 Sum_probs=98.9
Q ss_pred CCcEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEE
Q 029575 78 SGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILF 157 (191)
Q Consensus 78 ~~v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~ 157 (191)
+.|.++++++|...+.+.+++++|+||++||++|+.+.|.|+++++++.+++.|+.+|++.++.++++|+|+++|++++|
T Consensus 3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 82 (109)
T PRK09381 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF 82 (109)
T ss_pred CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEE
Confidence 34899999999988877789999999999999999999999999999988899999999999999999999999999999
Q ss_pred ECCeEEeeeeecCCCCHHHHHHHHHHHhh
Q 029575 158 KNGQEVPESRREGAITKLKLKEYIDTLLD 186 (191)
Q Consensus 158 ~~g~~~~~~~~~g~~~~~~l~~~i~~~l~ 186 (191)
++|+.+ ..+.|..+.++|.++|++.+.
T Consensus 83 ~~G~~~--~~~~G~~~~~~l~~~i~~~~~ 109 (109)
T PRK09381 83 KNGEVA--ATKVGALSKGQLKEFLDANLA 109 (109)
T ss_pred eCCeEE--EEecCCCCHHHHHHHHHHhcC
Confidence 999887 578899999999999998763
No 7
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.91 E-value=1.3e-23 Score=143.42 Aligned_cols=98 Identities=20% Similarity=0.352 Sum_probs=90.7
Q ss_pred cEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEEC
Q 029575 80 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKN 159 (191)
Q Consensus 80 v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~ 159 (191)
+.+|+.++|...+.+ +++++|+||++||++|+.+.|.|+++++++++.+.|+.||+++++.++++|+|.++||+++|++
T Consensus 3 ~~~l~~~~f~~~v~~-~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 81 (101)
T cd03003 3 IVTLDRGDFDAAVNS-GEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPS 81 (101)
T ss_pred eEEcCHhhHHHHhcC-CCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcC
Confidence 789999999987754 6999999999999999999999999999998889999999999999999999999999999999
Q ss_pred CeEEeeeeecCCCCHHHHHHH
Q 029575 160 GQEVPESRREGAITKLKLKEY 180 (191)
Q Consensus 160 g~~~~~~~~~g~~~~~~l~~~ 180 (191)
|+.. .++.|..+.+.|.+|
T Consensus 82 g~~~--~~~~G~~~~~~l~~f 100 (101)
T cd03003 82 GMNP--EKYYGDRSKESLVKF 100 (101)
T ss_pred CCCc--ccCCCCCCHHHHHhh
Confidence 9876 589999999988876
No 8
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.9e-23 Score=163.35 Aligned_cols=106 Identities=39% Similarity=0.795 Sum_probs=100.3
Q ss_pred cEEcCCCChhhHHhcC--CCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEE
Q 029575 80 ITEITESEFPNTVLKS--ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILF 157 (191)
Q Consensus 80 v~~l~~~~~~~~~~~~--~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~ 157 (191)
|.++|..+|...+... .++|+|+||++||++|+.+.|.++++..+|.+++.+++||||+++.++..|||+++||++.|
T Consensus 25 I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af 104 (304)
T COG3118 25 IKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAF 104 (304)
T ss_pred ceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEe
Confidence 8999999999887754 56999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCeEEeeeeecCCCCHHHHHHHHHHHhhh
Q 029575 158 KNGQEVPESRREGAITKLKLKEYIDTLLDS 187 (191)
Q Consensus 158 ~~g~~~~~~~~~g~~~~~~l~~~i~~~l~~ 187 (191)
++|+.+ ..+.|....+.+++||++++..
T Consensus 105 ~dGqpV--dgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 105 KDGQPV--DGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred eCCcCc--cccCCCCcHHHHHHHHHHhcCh
Confidence 999999 5899999999999999999865
No 9
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.90 E-value=1e-22 Score=140.65 Aligned_cols=97 Identities=20% Similarity=0.393 Sum_probs=82.0
Q ss_pred CChhhHHhc-CCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEEe
Q 029575 86 SEFPNTVLK-SERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVP 164 (191)
Q Consensus 86 ~~~~~~~~~-~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 164 (191)
++|...+.. .++++||+||++||++|+.+.|.|++++.++++.+.|++||+|++++++++|+|.++||+++|++|+.+.
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHMK 82 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEE
Confidence 455656653 4789999999999999999999999999999888899999999999999999999999999999999994
Q ss_pred eeeecCCC----------CHHHHHHHHHHH
Q 029575 165 ESRREGAI----------TKLKLKEYIDTL 184 (191)
Q Consensus 165 ~~~~~g~~----------~~~~l~~~i~~~ 184 (191)
+..|.. +.+.+.+.+..+
T Consensus 83 --~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02954 83 --IDLGTGNNNKINWVFEDKQEFIDIIETI 110 (114)
T ss_pred --EEcCCCCCceEEEecCcHHHHHHHHHHH
Confidence 555543 445666666554
No 10
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.89 E-value=2.1e-22 Score=136.01 Aligned_cols=94 Identities=34% Similarity=0.608 Sum_probs=85.6
Q ss_pred ChhhHHhcC-CCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEEee
Q 029575 87 EFPNTVLKS-ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPE 165 (191)
Q Consensus 87 ~~~~~~~~~-~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 165 (191)
+|.+.+.+. +++++|+||++||++|+.+.|.++++++.+.+.+.++.||++++.+++++|+|.++|++++|++|+.+
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~-- 79 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPV-- 79 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEe--
Confidence 566666655 78999999999999999999999999999988899999999999999999999999999999999887
Q ss_pred eeecCCCCHHHHHHHHH
Q 029575 166 SRREGAITKLKLKEYID 182 (191)
Q Consensus 166 ~~~~g~~~~~~l~~~i~ 182 (191)
..+.|..+.++|.++|+
T Consensus 80 ~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 80 DGFQGAQPEEQLRQMLD 96 (96)
T ss_pred eeecCCCCHHHHHHHhC
Confidence 57899999999998874
No 11
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.89 E-value=1.9e-22 Score=139.31 Aligned_cols=101 Identities=27% Similarity=0.499 Sum_probs=89.2
Q ss_pred CcEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhC------CCeEEEEEECCCCHHHHHHcCCCccc
Q 029575 79 GITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYG------DRLTVVKIDHDANPQLIEEYKVYGLP 152 (191)
Q Consensus 79 ~v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~------~~v~~~~vd~d~~~~~~~~~~v~~~P 152 (191)
.|.++++++|...+ +.++.++|+||++||++|+.+.|.|+++++.+. +.+.|+.||++.+.+++++|+|+++|
T Consensus 2 ~v~~l~~~~f~~~i-~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P 80 (108)
T cd02996 2 EIVSLTSGNIDDIL-QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP 80 (108)
T ss_pred ceEEcCHhhHHHHH-hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence 37899999999766 557899999999999999999999999988753 24899999999999999999999999
Q ss_pred EEEEEECCeEEeeeeecCCCCHHHHHHHH
Q 029575 153 TLILFKNGQEVPESRREGAITKLKLKEYI 181 (191)
Q Consensus 153 t~~~~~~g~~~~~~~~~g~~~~~~l~~~i 181 (191)
|+++|.+|+... ..+.|..+.+.|.+||
T Consensus 81 tl~~~~~g~~~~-~~~~g~~~~~~l~~fi 108 (108)
T cd02996 81 TLKLFRNGMMMK-REYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEEeCCcCcc-eecCCCCCHHHHHhhC
Confidence 999999998543 5789999999998875
No 12
>PHA02278 thioredoxin-like protein
Probab=99.89 E-value=2.3e-22 Score=137.48 Aligned_cols=92 Identities=20% Similarity=0.479 Sum_probs=79.8
Q ss_pred CChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCC----HHHHHHcCCCcccEEEEEECCe
Q 029575 86 SEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDAN----PQLIEEYKVYGLPTLILFKNGQ 161 (191)
Q Consensus 86 ~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~----~~~~~~~~v~~~Pt~~~~~~g~ 161 (191)
++|...+ ..+++++|+|||+||++|+.+.|.++++++++..++.|+.||+|.+ ++++++|+|.++||+++|++|+
T Consensus 5 ~~~~~~i-~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~ 83 (103)
T PHA02278 5 VDLNTAI-RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQ 83 (103)
T ss_pred HHHHHHH-hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCE
Confidence 3455555 4589999999999999999999999999988655578999999976 6899999999999999999999
Q ss_pred EEeeeeecCCCCHHHHHHH
Q 029575 162 EVPESRREGAITKLKLKEY 180 (191)
Q Consensus 162 ~~~~~~~~g~~~~~~l~~~ 180 (191)
.+ .+..|..+.+++.++
T Consensus 84 ~v--~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 84 LV--KKYEDQVTPMQLQEL 100 (103)
T ss_pred EE--EEEeCCCCHHHHHhh
Confidence 99 588998888887764
No 13
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.89 E-value=3.1e-22 Score=138.18 Aligned_cols=103 Identities=28% Similarity=0.517 Sum_probs=92.7
Q ss_pred cEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCC--CHHHHHHcCCCcccEEEEE
Q 029575 80 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDA--NPQLIEEYKVYGLPTLILF 157 (191)
Q Consensus 80 v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~--~~~~~~~~~v~~~Pt~~~~ 157 (191)
|.++++++|...+.+.+++++|+||++||++|+.+.|.|+++++.+.+.+.|+.+|++. +.+++++|+|.++||+++|
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~ 81 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVF 81 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEE
Confidence 67899999999988888899999999999999999999999999998889999999998 8899999999999999999
Q ss_pred ECCeE---EeeeeecCCCCHHHHHHHHH
Q 029575 158 KNGQE---VPESRREGAITKLKLKEYID 182 (191)
Q Consensus 158 ~~g~~---~~~~~~~g~~~~~~l~~~i~ 182 (191)
++|+. .....+.|..+.+.|.+||.
T Consensus 82 ~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 82 RPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred eCCCcccccccccccCccCHHHHHHHhC
Confidence 98862 11257899999999999873
No 14
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.88 E-value=2e-22 Score=139.94 Aligned_cols=101 Identities=19% Similarity=0.430 Sum_probs=89.0
Q ss_pred EcCCCChhhHHhc--CCCcEEEEEEcCCChhhhchHHHHHHHHHHhCC-CeEEEEEECCCCHHHHHHcCCCcccEEEEEE
Q 029575 82 EITESEFPNTVLK--SERPVLVEFVANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHDANPQLIEEYKVYGLPTLILFK 158 (191)
Q Consensus 82 ~l~~~~~~~~~~~--~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~ 158 (191)
.++.++|.+.+.. .+++++|+||++||++|+.+.|.++++++++.+ ++.|+.||++.++.++++|+|.++||+++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~ 87 (111)
T cd02963 8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGII 87 (111)
T ss_pred eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEE
Confidence 4556667665543 479999999999999999999999999999975 5999999999999999999999999999999
Q ss_pred CCeEEeeeeecCCCCHHHHHHHHHHH
Q 029575 159 NGQEVPESRREGAITKLKLKEYIDTL 184 (191)
Q Consensus 159 ~g~~~~~~~~~g~~~~~~l~~~i~~~ 184 (191)
+|+.+ .+..|..+.+.|.++|+++
T Consensus 88 ~g~~~--~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 88 NGQVT--FYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred CCEEE--EEecCCCCHHHHHHHHhcC
Confidence 99877 5789999999999999864
No 15
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.88 E-value=5.9e-22 Score=135.12 Aligned_cols=99 Identities=29% Similarity=0.510 Sum_probs=87.7
Q ss_pred CcEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCC-CeEEEEEECCCCHHHHHHcCCCcccEEEEE
Q 029575 79 GITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHDANPQLIEEYKVYGLPTLILF 157 (191)
Q Consensus 79 ~v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~ 157 (191)
.|.+|+.++|...+ + ++ ++|+||++||++|+.+.|.|+++++.+.+ ++.|+.||+++++.++++|+|.++||++++
T Consensus 2 ~v~~l~~~~f~~~~-~-~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 78 (101)
T cd02994 2 NVVELTDSNWTLVL-E-GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHA 78 (101)
T ss_pred ceEEcChhhHHHHh-C-CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEe
Confidence 37899999999765 3 33 78999999999999999999999998764 599999999999999999999999999999
Q ss_pred ECCeEEeeeeecCCCCHHHHHHHHHH
Q 029575 158 KNGQEVPESRREGAITKLKLKEYIDT 183 (191)
Q Consensus 158 ~~g~~~~~~~~~g~~~~~~l~~~i~~ 183 (191)
.+|+. ..+.|..+.++|.++|++
T Consensus 79 ~~g~~---~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 79 KDGVF---RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred CCCCE---EEecCCCCHHHHHHHHhC
Confidence 88864 378999999999999874
No 16
>PRK10996 thioredoxin 2; Provisional
Probab=99.88 E-value=9.6e-22 Score=141.76 Aligned_cols=103 Identities=31% Similarity=0.662 Sum_probs=94.1
Q ss_pred cEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEEC
Q 029575 80 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKN 159 (191)
Q Consensus 80 v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~ 159 (191)
+.+++.++|...+. .++.++|+||++||++|+.+.|.|+++++++.+++.|+.+|++++++++++|+|.++|++++|++
T Consensus 37 ~i~~~~~~~~~~i~-~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~ 115 (139)
T PRK10996 37 VINATGETLDKLLQ-DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKN 115 (139)
T ss_pred CEEcCHHHHHHHHh-CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEEC
Confidence 56788888887654 48999999999999999999999999999998889999999999999999999999999999999
Q ss_pred CeEEeeeeecCCCCHHHHHHHHHHHh
Q 029575 160 GQEVPESRREGAITKLKLKEYIDTLL 185 (191)
Q Consensus 160 g~~~~~~~~~g~~~~~~l~~~i~~~l 185 (191)
|+.+ ..+.|..+.++|.++|++++
T Consensus 116 G~~v--~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 116 GQVV--DMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred CEEE--EEEcCCCCHHHHHHHHHHhC
Confidence 9988 57899999999999999864
No 17
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.88 E-value=6.2e-22 Score=135.71 Aligned_cols=95 Identities=21% Similarity=0.391 Sum_probs=81.2
Q ss_pred CCChhhHHhcC-CCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCH---HHHHHcCCCcccEEEEEECC
Q 029575 85 ESEFPNTVLKS-ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANP---QLIEEYKVYGLPTLILFKNG 160 (191)
Q Consensus 85 ~~~~~~~~~~~-~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~---~~~~~~~v~~~Pt~~~~~~g 160 (191)
.++|...+.+. +++++|+||++||++|+.+.|.|+++++++ +++.|+.||+|++. +++++|+|.++||+++|++|
T Consensus 3 ~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G 81 (103)
T cd02985 3 VEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDG 81 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCC
Confidence 34566666543 899999999999999999999999999999 45999999999874 79999999999999999999
Q ss_pred eEEeeeeecCCCCHHHHHHHHHH
Q 029575 161 QEVPESRREGAITKLKLKEYIDT 183 (191)
Q Consensus 161 ~~~~~~~~~g~~~~~~l~~~i~~ 183 (191)
+.+ .++.|. .+++|.+.+..
T Consensus 82 ~~v--~~~~G~-~~~~l~~~~~~ 101 (103)
T cd02985 82 EKI--HEEEGI-GPDELIGDVLY 101 (103)
T ss_pred eEE--EEEeCC-CHHHHHHHHHh
Confidence 988 588885 67777776654
No 18
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=5.5e-22 Score=135.89 Aligned_cols=89 Identities=36% Similarity=0.732 Sum_probs=80.2
Q ss_pred HhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEEeeeeecCC
Q 029575 92 VLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGA 171 (191)
Q Consensus 92 ~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~ 171 (191)
...++++++|+||++||+||+.+.|.+++|+.+|++ +.|++||+|+..+++++|+|..+||+++|++|+.+ .+..|.
T Consensus 17 ~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~--~~~vGa 93 (106)
T KOG0907|consen 17 AEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEV--DEVVGA 93 (106)
T ss_pred hhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEE--EEEecC
Confidence 334469999999999999999999999999999999 99999999999999999999999999999999999 578887
Q ss_pred CCHHHHHHHHHHH
Q 029575 172 ITKLKLKEYIDTL 184 (191)
Q Consensus 172 ~~~~~l~~~i~~~ 184 (191)
+.+++.+.|.++
T Consensus 94 -~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 94 -NKAELEKKIAKH 105 (106)
T ss_pred -CHHHHHHHHHhc
Confidence 666777777654
No 19
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.87 E-value=1.1e-21 Score=133.75 Aligned_cols=98 Identities=35% Similarity=0.724 Sum_probs=88.6
Q ss_pred cEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCC---CeEEEEEECCCCHHHHHHcCCCcccEEEE
Q 029575 80 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGD---RLTVVKIDHDANPQLIEEYKVYGLPTLIL 156 (191)
Q Consensus 80 v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~ 156 (191)
+.++++++|...+.+ + .++|+||++||++|+.+.|.|+++++++.+ ++.++.||++++..++++|+|.++||+++
T Consensus 2 ~~~l~~~~f~~~~~~-~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 79 (102)
T cd03005 2 VLELTEDNFDHHIAE-G-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL 79 (102)
T ss_pred eeECCHHHHHHHhhc-C-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence 678999999988754 3 599999999999999999999999999976 69999999999999999999999999999
Q ss_pred EECCeEEeeeeecCCCCHHHHHHHH
Q 029575 157 FKNGQEVPESRREGAITKLKLKEYI 181 (191)
Q Consensus 157 ~~~g~~~~~~~~~g~~~~~~l~~~i 181 (191)
|.+|+.+ ..+.|..+.++|.+||
T Consensus 80 ~~~g~~~--~~~~G~~~~~~l~~~i 102 (102)
T cd03005 80 FKDGEKV--DKYKGTRDLDSLKEFV 102 (102)
T ss_pred EeCCCee--eEeeCCCCHHHHHhhC
Confidence 9999876 5899999999888775
No 20
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.87 E-value=2e-21 Score=132.65 Aligned_cols=101 Identities=33% Similarity=0.577 Sum_probs=91.8
Q ss_pred cEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEEC
Q 029575 80 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKN 159 (191)
Q Consensus 80 v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~ 159 (191)
|.++++++|...+.+.+++++|+||++||++|+.+.|.|.++++++.+++.|+.+|++++++++++|+|.++|++++|++
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~ 81 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGA 81 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECC
Confidence 67899999999888877889999999999999999999999999998889999999999999999999999999999998
Q ss_pred CeEEeeeeecCCCCHHHHHHHH
Q 029575 160 GQEVPESRREGAITKLKLKEYI 181 (191)
Q Consensus 160 g~~~~~~~~~g~~~~~~l~~~i 181 (191)
|+... ..+.|..+.++|.+|+
T Consensus 82 ~~~~~-~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 82 GKNSP-QDYQGGRTAKAIVSAA 102 (103)
T ss_pred CCcce-eecCCCCCHHHHHHHh
Confidence 84332 5789999999998886
No 21
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.87 E-value=2.4e-21 Score=149.31 Aligned_cols=109 Identities=27% Similarity=0.495 Sum_probs=98.2
Q ss_pred CCCcEEcCCCChhhHHhcC----CCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCccc
Q 029575 77 SSGITEITESEFPNTVLKS----ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLP 152 (191)
Q Consensus 77 ~~~v~~l~~~~~~~~~~~~----~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~P 152 (191)
.+.+.++++++|+..+... +++++|+||++||++|+.+.|.|+++++++++.+.|+.+|++++++++++|+|.++|
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~P 108 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYP 108 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCC
Confidence 3458999999999877643 589999999999999999999999999999888999999999999999999999999
Q ss_pred EEEEEECCeEEeeeeecCCCCHHHHHHHHHHHhhh
Q 029575 153 TLILFKNGQEVPESRREGAITKLKLKEYIDTLLDS 187 (191)
Q Consensus 153 t~~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~l~~ 187 (191)
|+++|++|+.+ ..+.|..+.++|.+|+.+.+..
T Consensus 109 Tl~~f~~G~~v--~~~~G~~s~e~L~~fi~~~~~~ 141 (224)
T PTZ00443 109 TLLLFDKGKMY--QYEGGDRSTEKLAAFALGDFKK 141 (224)
T ss_pred EEEEEECCEEE--EeeCCCCCHHHHHHHHHHHHHh
Confidence 99999999877 4677889999999999988753
No 22
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.87 E-value=2.8e-21 Score=132.24 Aligned_cols=96 Identities=26% Similarity=0.528 Sum_probs=83.1
Q ss_pred CCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCC-eEEEEEECCCCHHHHHHcCCCcccEEEEEECCeE
Q 029575 84 TESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDR-LTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQE 162 (191)
Q Consensus 84 ~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~ 162 (191)
+.++|...+ +.+++++|+||++||++|+.+.|.+++++++++++ +.|+.+|+| +.+++++|+|+++||+++|++|+.
T Consensus 6 ~~~~~~~~i-~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (102)
T cd02948 6 NQEEWEELL-SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGEL 83 (102)
T ss_pred CHHHHHHHH-ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCEE
Confidence 445666544 45899999999999999999999999999999754 889999999 788999999999999999999998
Q ss_pred EeeeeecCCCCHHHHHHHHHHH
Q 029575 163 VPESRREGAITKLKLKEYIDTL 184 (191)
Q Consensus 163 ~~~~~~~g~~~~~~l~~~i~~~ 184 (191)
+ .+..|. +.+.+.++|+++
T Consensus 84 ~--~~~~G~-~~~~~~~~i~~~ 102 (102)
T cd02948 84 V--AVIRGA-NAPLLNKTITEL 102 (102)
T ss_pred E--EEEecC-ChHHHHHHHhhC
Confidence 8 477775 889999988763
No 23
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.87 E-value=2.7e-21 Score=138.43 Aligned_cols=106 Identities=17% Similarity=0.341 Sum_probs=89.8
Q ss_pred EEcC-CCChhhHHh-cCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEE-EE
Q 029575 81 TEIT-ESEFPNTVL-KSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLI-LF 157 (191)
Q Consensus 81 ~~l~-~~~~~~~~~-~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~-~~ 157 (191)
.+|. .++++..+. +.++++||.||++||++|+.+.|.|+++++++++.+.|++||+|+++++++.|+|.+.|+++ +|
T Consensus 6 ~~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ff 85 (142)
T PLN00410 6 PHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFF 85 (142)
T ss_pred hhhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEE
Confidence 3443 456776666 44889999999999999999999999999999888999999999999999999999776666 88
Q ss_pred ECCe-EEeeeeecC--------CCCHHHHHHHHHHHhhhh
Q 029575 158 KNGQ-EVPESRREG--------AITKLKLKEYIDTLLDSI 188 (191)
Q Consensus 158 ~~g~-~~~~~~~~g--------~~~~~~l~~~i~~~l~~~ 188 (191)
++|+ .+ .+..| ..+.++|.+.++.++...
T Consensus 86 k~g~~~v--d~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a 123 (142)
T PLN00410 86 RNKHIMI--DLGTGNNNKINWALKDKQEFIDIVETVYRGA 123 (142)
T ss_pred ECCeEEE--EEecccccccccccCCHHHHHHHHHHHHHHH
Confidence 9998 55 57777 578899999999887643
No 24
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.87 E-value=1.3e-21 Score=133.43 Aligned_cols=84 Identities=26% Similarity=0.468 Sum_probs=77.1
Q ss_pred cCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECC-CCHHHHHHcCCCcccEEEEEECCeEEeeeeecCCC
Q 029575 94 KSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHD-ANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAI 172 (191)
Q Consensus 94 ~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d-~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~ 172 (191)
..+++++|+||++||++|+.+.|.|+++++++++ +.++.||.+ +++.++++|+|.++||+++|++| .+ .++.|..
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~--~~~~G~~ 91 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PR--VRYNGTR 91 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ce--eEecCCC
Confidence 3489999999999999999999999999999976 889999998 78999999999999999999988 55 5899999
Q ss_pred CHHHHHHHH
Q 029575 173 TKLKLKEYI 181 (191)
Q Consensus 173 ~~~~l~~~i 181 (191)
+.+.|.+||
T Consensus 92 ~~~~l~~f~ 100 (100)
T cd02999 92 TLDSLAAFY 100 (100)
T ss_pred CHHHHHhhC
Confidence 999998875
No 25
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.86 E-value=6.4e-21 Score=130.88 Aligned_cols=97 Identities=12% Similarity=0.180 Sum_probs=88.8
Q ss_pred cEEcCCCChhhHHhcCCCcEEEEEEcCC--ChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEE
Q 029575 80 ITEITESEFPNTVLKSERPVLVEFVANW--CGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILF 157 (191)
Q Consensus 80 v~~l~~~~~~~~~~~~~k~vlv~F~a~w--C~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~ 157 (191)
..+++..+|++.+ +.+..++|+||++| |++|+.+.|.|++++++|++.+.|+.||++++++++.+|+|+++||+++|
T Consensus 12 ~~~~~~~~~~~~~-~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~f 90 (111)
T cd02965 12 WPRVDAATLDDWL-AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFF 90 (111)
T ss_pred CcccccccHHHHH-hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEE
Confidence 5688999999666 55899999999997 99999999999999999998899999999999999999999999999999
Q ss_pred ECCeEEeeeeecCCCCHHHHHH
Q 029575 158 KNGQEVPESRREGAITKLKLKE 179 (191)
Q Consensus 158 ~~g~~~~~~~~~g~~~~~~l~~ 179 (191)
++|+.+ ....|..+.+++..
T Consensus 91 kdGk~v--~~~~G~~~~~e~~~ 110 (111)
T cd02965 91 RDGRYV--GVLAGIRDWDEYVA 110 (111)
T ss_pred ECCEEE--EEEeCccCHHHHhh
Confidence 999998 57889988888753
No 26
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.86 E-value=7.4e-21 Score=128.93 Aligned_cols=100 Identities=46% Similarity=0.902 Sum_probs=90.1
Q ss_pred CCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEE
Q 029575 84 TESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEV 163 (191)
Q Consensus 84 ~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~ 163 (191)
+.++|...+.+.++.++|+||++||++|+.+.+.|+++++++++++.|+.+|++++..++++|+|.++|++++|.+|+.+
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~ 81 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKEV 81 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcEe
Confidence 45667777766678999999999999999999999999999987899999999999999999999999999999999887
Q ss_pred eeeeecCCCCHHHHHHHHHHHh
Q 029575 164 PESRREGAITKLKLKEYIDTLL 185 (191)
Q Consensus 164 ~~~~~~g~~~~~~l~~~i~~~l 185 (191)
..+.|..+.+++.++|++.+
T Consensus 82 --~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 82 --DRSVGALPKAALKQLINKNL 101 (101)
T ss_pred --eeecCCCCHHHHHHHHHhhC
Confidence 57889999999999998754
No 27
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.85 E-value=7.6e-21 Score=129.29 Aligned_cols=100 Identities=35% Similarity=0.629 Sum_probs=89.7
Q ss_pred cCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCC--CeEEEEEECCCCHHHHHHcCCCcccEEEEEECC
Q 029575 83 ITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGD--RLTVVKIDHDANPQLIEEYKVYGLPTLILFKNG 160 (191)
Q Consensus 83 l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g 160 (191)
|++++|...+. .+++++|+||++||++|+.+.+.|+++++.+.+ ++.++.+|+++++.++++|+|.++|++++|++|
T Consensus 1 l~~~~~~~~~~-~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 1 LTASNFDDIVL-SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred CchhhHHHHhc-cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 45677887765 589999999999999999999999999999876 599999999999999999999999999999988
Q ss_pred eEEeeeeecCCCCHHHHHHHHHHHh
Q 029575 161 QEVPESRREGAITKLKLKEYIDTLL 185 (191)
Q Consensus 161 ~~~~~~~~~g~~~~~~l~~~i~~~l 185 (191)
+.. ..+.|..+.++|.+||++++
T Consensus 80 ~~~--~~~~g~~~~~~l~~~i~~~~ 102 (102)
T TIGR01126 80 KKP--VDYEGGRDLEAIVEFVNEKS 102 (102)
T ss_pred Ccc--eeecCCCCHHHHHHHHHhcC
Confidence 764 58999999999999998753
No 28
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.85 E-value=1.7e-20 Score=128.19 Aligned_cols=99 Identities=33% Similarity=0.606 Sum_probs=88.4
Q ss_pred cEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhC--CCeEEEEEECCC--CHHHHHHcCCCcccEEE
Q 029575 80 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYG--DRLTVVKIDHDA--NPQLIEEYKVYGLPTLI 155 (191)
Q Consensus 80 v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~--~~~~~~~~~v~~~Pt~~ 155 (191)
|.+++..+|...+.+ ++.++|+||++||++|+.+.|.++++++.+. ..+.++.+|++. +..++++|+|.++||++
T Consensus 2 ~~~l~~~~~~~~~~~-~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 2 VVHLTDEDFRKFLKK-EKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred eEEechHhHHHHHhh-CCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence 678888889877655 6799999999999999999999999999886 458899999998 89999999999999999
Q ss_pred EEECCeEEeeeeecCCCCHHHHHHHH
Q 029575 156 LFKNGQEVPESRREGAITKLKLKEYI 181 (191)
Q Consensus 156 ~~~~g~~~~~~~~~g~~~~~~l~~~i 181 (191)
+|++|+.+ ..+.|..+.+.+.+||
T Consensus 81 ~~~~g~~~--~~~~g~~~~~~l~~~l 104 (104)
T cd02997 81 YFENGKFV--EKYEGERTAEDIIEFM 104 (104)
T ss_pred EEeCCCee--EEeCCCCCHHHHHhhC
Confidence 99998876 5889999999988875
No 29
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.85 E-value=1.4e-20 Score=128.62 Aligned_cols=101 Identities=38% Similarity=0.703 Sum_probs=89.7
Q ss_pred cEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhC--CCeEEEEEECCC-CHHHHHHcCCCcccEEEE
Q 029575 80 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYG--DRLTVVKIDHDA-NPQLIEEYKVYGLPTLIL 156 (191)
Q Consensus 80 v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~-~~~~~~~~~v~~~Pt~~~ 156 (191)
|.++++++|...+.+.++.++|+||++||++|+.+.|.++++++.+. +++.++.+|++. ++.++++|+|.++|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 57889999998877767799999999999999999999999999987 359999999999 999999999999999999
Q ss_pred EECCeEEeeeeecCCCCHHHHHHHH
Q 029575 157 FKNGQEVPESRREGAITKLKLKEYI 181 (191)
Q Consensus 157 ~~~g~~~~~~~~~g~~~~~~l~~~i 181 (191)
|++|+... ..+.|..+.++|.+||
T Consensus 82 ~~~~~~~~-~~~~g~~~~~~l~~~i 105 (105)
T cd02998 82 FPKGSTEP-VKYEGGRDLEDLVKFV 105 (105)
T ss_pred EeCCCCCc-cccCCccCHHHHHhhC
Confidence 98774332 5788999999998875
No 30
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.85 E-value=1.4e-20 Score=128.54 Aligned_cols=101 Identities=35% Similarity=0.643 Sum_probs=89.6
Q ss_pred cEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCC--CeEEEEEECCCCHHHHHHcCCCcccEEEEE
Q 029575 80 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGD--RLTVVKIDHDANPQLIEEYKVYGLPTLILF 157 (191)
Q Consensus 80 v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~ 157 (191)
|.+|++++|...+.+.++.++|+||++||++|+.+.|.|+++++.+.+ ++.|+.+|++++ +++..+++.++|++++|
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~ 80 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFF 80 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEE
Confidence 789999999988888789999999999999999999999999999876 599999999987 68889999999999999
Q ss_pred ECCeEEeeeeecCCCCHHHHHHHH
Q 029575 158 KNGQEVPESRREGAITKLKLKEYI 181 (191)
Q Consensus 158 ~~g~~~~~~~~~g~~~~~~l~~~i 181 (191)
.+|++.....+.|..+.+.|.+||
T Consensus 81 ~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 81 PAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred cCCCcCCceEccCCcCHHHHHhhC
Confidence 988722225789999999998875
No 31
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.85 E-value=3.5e-20 Score=134.02 Aligned_cols=93 Identities=34% Similarity=0.677 Sum_probs=82.6
Q ss_pred hcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCC--HHHHHHcCCCcccEEEEEE-CCeEEeeeeec
Q 029575 93 LKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDAN--PQLIEEYKVYGLPTLILFK-NGQEVPESRRE 169 (191)
Q Consensus 93 ~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~--~~~~~~~~v~~~Pt~~~~~-~g~~~~~~~~~ 169 (191)
...++++||+||++||++|+.+.|.+.++++++.+++.|+.||+|.. ..++++|+|.++|++++|+ +|+.+ .++.
T Consensus 17 ~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v--~~~~ 94 (142)
T cd02950 17 LSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEE--GQSI 94 (142)
T ss_pred HhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEE--EEEe
Confidence 34589999999999999999999999999999987788888888754 5789999999999999996 78777 5889
Q ss_pred CCCCHHHHHHHHHHHhhh
Q 029575 170 GAITKLKLKEYIDTLLDS 187 (191)
Q Consensus 170 g~~~~~~l~~~i~~~l~~ 187 (191)
|....++|.++|+++++.
T Consensus 95 G~~~~~~l~~~l~~l~~~ 112 (142)
T cd02950 95 GLQPKQVLAQNLDALVAG 112 (142)
T ss_pred CCCCHHHHHHHHHHHHcC
Confidence 999999999999998854
No 32
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.84 E-value=3.3e-20 Score=127.28 Aligned_cols=100 Identities=16% Similarity=0.274 Sum_probs=82.9
Q ss_pred CChhhHHhcC-CCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEEe
Q 029575 86 SEFPNTVLKS-ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVP 164 (191)
Q Consensus 86 ~~~~~~~~~~-~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 164 (191)
++++..+.+. ++++||.|+++||++|+.+.|.|+++++++++.+.|+.||+|+.+++++.|+|.+.||+++|++|+.+.
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~~ 82 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHMK 82 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEEE
Confidence 3455555533 899999999999999999999999999999866999999999999999999999999999999999875
Q ss_pred eeeecCCC--------CHHHHHHHHHHHh
Q 029575 165 ESRREGAI--------TKLKLKEYIDTLL 185 (191)
Q Consensus 165 ~~~~~g~~--------~~~~l~~~i~~~l 185 (191)
-....|.. +++++.+.|+.+.
T Consensus 83 ~d~gt~~~~k~~~~~~~k~~~idi~e~~y 111 (114)
T cd02986 83 VDYGSPDHTKFVGSFKTKQDFIDLIEVIY 111 (114)
T ss_pred EecCCCCCcEEEEEcCchhHHHHHHHHHH
Confidence 33444443 4577777776543
No 33
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.84 E-value=2.8e-20 Score=135.45 Aligned_cols=91 Identities=33% Similarity=0.537 Sum_probs=81.1
Q ss_pred CCcEEcCCCChhhHHhcC-CCcEEEEEEcCCChhhhchHHHHHHHHHHhCC-CeEEEEEECCCCHHHHHHcCCCc-----
Q 029575 78 SGITEITESEFPNTVLKS-ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHDANPQLIEEYKVYG----- 150 (191)
Q Consensus 78 ~~v~~l~~~~~~~~~~~~-~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~~~~~~v~~----- 150 (191)
..+.+++.++|+..+... +++++|+||++||++|+.+.|.|+++++++++ ++.|++||++++++++++|+|.+
T Consensus 28 ~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~ 107 (152)
T cd02962 28 EHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSK 107 (152)
T ss_pred CccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcC
Confidence 348899999999877543 57999999999999999999999999999875 59999999999999999999988
Q ss_pred -ccEEEEEECCeEEeeeeecC
Q 029575 151 -LPTLILFKNGQEVPESRREG 170 (191)
Q Consensus 151 -~Pt~~~~~~g~~~~~~~~~g 170 (191)
+||+++|++|+++. +..|
T Consensus 108 ~~PT~ilf~~Gk~v~--r~~G 126 (152)
T cd02962 108 QLPTIILFQGGKEVA--RRPY 126 (152)
T ss_pred CCCEEEEEECCEEEE--EEec
Confidence 99999999999994 5554
No 34
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.84 E-value=7.3e-21 Score=132.49 Aligned_cols=89 Identities=29% Similarity=0.466 Sum_probs=80.2
Q ss_pred CcEEcCCCChhhHHhcC--CCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEE
Q 029575 79 GITEITESEFPNTVLKS--ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLIL 156 (191)
Q Consensus 79 ~v~~l~~~~~~~~~~~~--~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~ 156 (191)
.+.+++.++|...+.+. +++++|+||++||++|+.+.|.|+++++++++ +.|++||++++ +++++|+|.++||+++
T Consensus 5 ~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v~f~~vd~~~~-~l~~~~~i~~~Pt~~~ 82 (113)
T cd02957 5 EVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-TKFVKINAEKA-FLVNYLDIKVLPTLLV 82 (113)
T ss_pred eEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-cEEEEEEchhh-HHHHhcCCCcCCEEEE
Confidence 37899999999888765 38999999999999999999999999999976 89999999998 9999999999999999
Q ss_pred EECCeEEeeeeecCC
Q 029575 157 FKNGQEVPESRREGA 171 (191)
Q Consensus 157 ~~~g~~~~~~~~~g~ 171 (191)
|++|+.+. +..|.
T Consensus 83 f~~G~~v~--~~~G~ 95 (113)
T cd02957 83 YKNGELID--NIVGF 95 (113)
T ss_pred EECCEEEE--EEecH
Confidence 99999984 55553
No 35
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.84 E-value=3.9e-20 Score=127.99 Aligned_cols=101 Identities=19% Similarity=0.412 Sum_probs=85.9
Q ss_pred cEEcCCCChhhHHh--cCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCC-CeEEEEEECCC-CHHHHH-HcCCCcccEE
Q 029575 80 ITEITESEFPNTVL--KSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHDA-NPQLIE-EYKVYGLPTL 154 (191)
Q Consensus 80 v~~l~~~~~~~~~~--~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~-~~~~~~-~~~v~~~Pt~ 154 (191)
|.+++.++|+..+. +.+++++|+||++||++|+.+.|.|.++++.+.+ ++.++.||++. +..++. .|+|+++||+
T Consensus 3 v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti 82 (109)
T cd02993 3 VVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTI 82 (109)
T ss_pred ceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEE
Confidence 78999999998775 3478999999999999999999999999999986 49999999997 567776 5999999999
Q ss_pred EEEECCeEEeeeeecCC-CCHHHHHHHH
Q 029575 155 ILFKNGQEVPESRREGA-ITKLKLKEYI 181 (191)
Q Consensus 155 ~~~~~g~~~~~~~~~g~-~~~~~l~~~i 181 (191)
++|.+|.... ..|.|. .+.+.|..||
T Consensus 83 ~~f~~~~~~~-~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 83 LFFPKNSRQP-IKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEcCCCCCc-eeccCCCCCHHHHHhhC
Confidence 9998665432 578884 7999888775
No 36
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.83 E-value=8.5e-20 Score=123.68 Aligned_cols=92 Identities=28% Similarity=0.550 Sum_probs=84.0
Q ss_pred hhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEEeeeee
Q 029575 89 PNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRR 168 (191)
Q Consensus 89 ~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~ 168 (191)
...+.+.+++++|+||++||+.|+.+.+.++++++++.+++.++.+|++++++++.+++|.++|++++|++|+.+ .+.
T Consensus 6 ~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v--~~~ 83 (97)
T cd02949 6 RKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELV--KEI 83 (97)
T ss_pred HHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEE--EEE
Confidence 445666789999999999999999999999999999987899999999999999999999999999999999887 588
Q ss_pred cCCCCHHHHHHHHH
Q 029575 169 EGAITKLKLKEYID 182 (191)
Q Consensus 169 ~g~~~~~~l~~~i~ 182 (191)
.|..+.++|.++|+
T Consensus 84 ~g~~~~~~~~~~l~ 97 (97)
T cd02949 84 SGVKMKSEYREFIE 97 (97)
T ss_pred eCCccHHHHHHhhC
Confidence 99999999888873
No 37
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.83 E-value=9.5e-20 Score=126.84 Aligned_cols=84 Identities=29% Similarity=0.466 Sum_probs=76.8
Q ss_pred CcEEcCC-CChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEE
Q 029575 79 GITEITE-SEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILF 157 (191)
Q Consensus 79 ~v~~l~~-~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~ 157 (191)
.+.+|++ ++|...+.+ ++.++|+||++||++|+.+.|.++++++++++ +.|++||++++++++++|+|.++||+++|
T Consensus 5 ~v~~i~~~~~~~~~i~~-~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~~~~l~~~~~v~~vPt~l~f 82 (113)
T cd02989 5 KYREVSDEKEFFEIVKS-SERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEKAPFLVEKLNIKVLPTVILF 82 (113)
T ss_pred CeEEeCCHHHHHHHHhC-CCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEcccCHHHHHHCCCccCCEEEEE
Confidence 3788888 777777655 68999999999999999999999999999976 99999999999999999999999999999
Q ss_pred ECCeEEe
Q 029575 158 KNGQEVP 164 (191)
Q Consensus 158 ~~g~~~~ 164 (191)
++|+.+.
T Consensus 83 k~G~~v~ 89 (113)
T cd02989 83 KNGKTVD 89 (113)
T ss_pred ECCEEEE
Confidence 9999884
No 38
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.82 E-value=1.2e-19 Score=122.57 Aligned_cols=93 Identities=26% Similarity=0.532 Sum_probs=80.1
Q ss_pred CChhhHHhcC-CCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEEe
Q 029575 86 SEFPNTVLKS-ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVP 164 (191)
Q Consensus 86 ~~~~~~~~~~-~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 164 (191)
++|...+... ++.++|+||++||++|+.+.+.|+++++++..++.++.+|++++++++++|+|.++||+++|++|+.+
T Consensus 3 ~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~- 81 (97)
T cd02984 3 EEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIV- 81 (97)
T ss_pred HHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEE-
Confidence 4555555554 69999999999999999999999999999755799999999999999999999999999999999887
Q ss_pred eeeecCCCCHHHHHHHH
Q 029575 165 ESRREGAITKLKLKEYI 181 (191)
Q Consensus 165 ~~~~~g~~~~~~l~~~i 181 (191)
.+..|. +.++|.+.|
T Consensus 82 -~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 82 -DRVSGA-DPKELAKKV 96 (97)
T ss_pred -EEEeCC-CHHHHHHhh
Confidence 467775 677777665
No 39
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.82 E-value=2.3e-19 Score=123.00 Aligned_cols=94 Identities=31% Similarity=0.522 Sum_probs=80.6
Q ss_pred CChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCC---CeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeE
Q 029575 86 SEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGD---RLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQE 162 (191)
Q Consensus 86 ~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~ 162 (191)
++|+. +.+ ++.++|.||++||++|+.+.|.|+++++++.+ .+.++.+|++..+.++++|+|.++||+++|++|.
T Consensus 7 ~~~~~-~~~-~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~- 83 (104)
T cd03000 7 DSFKD-VRK-EDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDL- 83 (104)
T ss_pred hhhhh-hcc-CCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCC-
Confidence 45554 333 67999999999999999999999999999843 4899999999999999999999999999997664
Q ss_pred EeeeeecCCCCHHHHHHHHHHH
Q 029575 163 VPESRREGAITKLKLKEYIDTL 184 (191)
Q Consensus 163 ~~~~~~~g~~~~~~l~~~i~~~ 184 (191)
. ..+.|..+.++|.+++++.
T Consensus 84 ~--~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 84 A--YNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred c--eeecCCCCHHHHHHHHHhh
Confidence 3 3688999999999999864
No 40
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.82 E-value=1.7e-19 Score=125.57 Aligned_cols=97 Identities=21% Similarity=0.301 Sum_probs=84.3
Q ss_pred hhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEEeeee
Q 029575 88 FPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESR 167 (191)
Q Consensus 88 ~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~ 167 (191)
|...+.+ +..++|+||++||++|+.+.|.+++++..+ +++.|..+|.+++++++.+|+|.++||+++|++|+.....+
T Consensus 15 ~~~~l~~-~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~ 92 (113)
T cd02975 15 FFKEMKN-PVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIR 92 (113)
T ss_pred HHHHhCC-CeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEE
Confidence 3333433 567889999999999999999999999887 55999999999999999999999999999999877654447
Q ss_pred ecCCCCHHHHHHHHHHHhh
Q 029575 168 REGAITKLKLKEYIDTLLD 186 (191)
Q Consensus 168 ~~g~~~~~~l~~~i~~~l~ 186 (191)
+.|..+.+++.++|+.+++
T Consensus 93 ~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 93 YYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred EEecCchHHHHHHHHHHHh
Confidence 8899999999999999876
No 41
>PTZ00051 thioredoxin; Provisional
Probab=99.81 E-value=2.7e-19 Score=121.14 Aligned_cols=95 Identities=34% Similarity=0.594 Sum_probs=81.9
Q ss_pred cEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEEC
Q 029575 80 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKN 159 (191)
Q Consensus 80 v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~ 159 (191)
+.++++.+....+.+.++.++|+||++||++|+.+.+.|+++++++.+ +.|+.+|++++..++++|+|.++||+++|++
T Consensus 2 v~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 80 (98)
T PTZ00051 2 VHIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK-MVFVKVDVDELSEVAEKENITSMPTFKVFKN 80 (98)
T ss_pred eEEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC-cEEEEEECcchHHHHHHCCCceeeEEEEEeC
Confidence 566766555555666689999999999999999999999999998875 9999999999999999999999999999999
Q ss_pred CeEEeeeeecCCCCHHHHH
Q 029575 160 GQEVPESRREGAITKLKLK 178 (191)
Q Consensus 160 g~~~~~~~~~g~~~~~~l~ 178 (191)
|+.+ ..+.|. ..++|.
T Consensus 81 g~~~--~~~~G~-~~~~~~ 96 (98)
T PTZ00051 81 GSVV--DTLLGA-NDEALK 96 (98)
T ss_pred CeEE--EEEeCC-CHHHhh
Confidence 9988 577885 666654
No 42
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.81 E-value=1.7e-19 Score=123.64 Aligned_cols=93 Identities=22% Similarity=0.499 Sum_probs=79.2
Q ss_pred ChhhHHhcCCCcEEEEEEcCCChhhhchHHHH---HHHHHHhCCCeEEEEEECCC----CHHHHHHcCCCcccEEEEEE-
Q 029575 87 EFPNTVLKSERPVLVEFVANWCGPCRLVAPAV---EWLAQEYGDRLTVVKIDHDA----NPQLIEEYKVYGLPTLILFK- 158 (191)
Q Consensus 87 ~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~----~~~~~~~~~v~~~Pt~~~~~- 158 (191)
+|...+ +.+++++|+||++||++|+.+.+.+ .++++.+.+++.++.||+++ ..+++++|+|.++||+++|+
T Consensus 3 ~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~ 81 (104)
T cd02953 3 ALAQAL-AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP 81 (104)
T ss_pred HHHHHH-HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 344434 4589999999999999999999988 67888887679999999987 56899999999999999998
Q ss_pred -CCeEEeeeeecCCCCHHHHHHHHH
Q 029575 159 -NGQEVPESRREGAITKLKLKEYID 182 (191)
Q Consensus 159 -~g~~~~~~~~~g~~~~~~l~~~i~ 182 (191)
+|+.+ .++.|..+.++|.++|+
T Consensus 82 ~~g~~~--~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 82 GGEPEP--LRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCC--cccccccCHHHHHHHhC
Confidence 57766 68899999999988873
No 43
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.80 E-value=6.1e-19 Score=131.63 Aligned_cols=103 Identities=19% Similarity=0.317 Sum_probs=86.7
Q ss_pred CCCcEEcCC-CChhhHHhcCC--CcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccE
Q 029575 77 SSGITEITE-SEFPNTVLKSE--RPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPT 153 (191)
Q Consensus 77 ~~~v~~l~~-~~~~~~~~~~~--k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt 153 (191)
.+.+.+|+. ++|...+.+.+ .++||+||++||++|+.+.|.|++++++|+. +.|++||+++. .++.+|+|.++||
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~-vkF~kVd~d~~-~l~~~f~v~~vPT 138 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA-VKFCKIRASAT-GASDEFDTDALPA 138 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCC-eEEEEEeccch-hhHHhCCCCCCCE
Confidence 455899999 99998887644 4999999999999999999999999999975 99999999987 8999999999999
Q ss_pred EEEEECCeEEeeeeecC-------CCCHHHHHHHHHH
Q 029575 154 LILFKNGQEVPESRREG-------AITKLKLKEYIDT 183 (191)
Q Consensus 154 ~~~~~~g~~~~~~~~~g-------~~~~~~l~~~i~~ 183 (191)
+++|++|+.+. +..| ..+.+.|..+|.+
T Consensus 139 lllyk~G~~v~--~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 139 LLVYKGGELIG--NFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred EEEEECCEEEE--EEechHHhcCCCCCHHHHHHHHHh
Confidence 99999999884 3333 3455666666654
No 44
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.80 E-value=3.9e-19 Score=119.88 Aligned_cols=97 Identities=44% Similarity=0.730 Sum_probs=85.0
Q ss_pred EcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHh--CCCeEEEEEECCCCHHHHHHcCCCcccEEEEEEC
Q 029575 82 EITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEY--GDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKN 159 (191)
Q Consensus 82 ~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~--~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~ 159 (191)
+++.++|...+.+ ++.++|+||++||++|+.+.+.|+++++.+ .+.+.|+.+|++++..++++|+|.++|++++|++
T Consensus 2 ~l~~~~~~~~i~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 2 ELTDDNFDELVKD-SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred cccHHHHHHHHhC-CCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence 4667778877766 459999999999999999999999999999 5679999999999999999999999999999987
Q ss_pred C-eEEeeeeecCCCCHHHHHHHH
Q 029575 160 G-QEVPESRREGAITKLKLKEYI 181 (191)
Q Consensus 160 g-~~~~~~~~~g~~~~~~l~~~i 181 (191)
| +.. .++.|..+.+++.+|+
T Consensus 81 ~~~~~--~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GSKEP--VKYEGPRTLESLVEFI 101 (101)
T ss_pred CCccc--ccCCCCcCHHHHHhhC
Confidence 7 444 5888988999888764
No 45
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.79 E-value=2.1e-18 Score=120.28 Aligned_cols=85 Identities=32% Similarity=0.539 Sum_probs=75.7
Q ss_pred CcEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCC---CeEEEEEECC--CCHHHHHHcCCCcccE
Q 029575 79 GITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGD---RLTVVKIDHD--ANPQLIEEYKVYGLPT 153 (191)
Q Consensus 79 ~v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d--~~~~~~~~~~v~~~Pt 153 (191)
.+.+++.++|...+.+.+++++|+||++||++|+.+.|.|+++++++.+ .+.|+.+|++ .+.+++++|+|+++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 3789999999999888788999999999999999999999999998753 4899999975 4678999999999999
Q ss_pred EEEEECCeEE
Q 029575 154 LILFKNGQEV 163 (191)
Q Consensus 154 ~~~~~~g~~~ 163 (191)
+++|++|+..
T Consensus 82 ~~lf~~~~~~ 91 (114)
T cd02992 82 LRYFPPFSKE 91 (114)
T ss_pred EEEECCCCcc
Confidence 9999887754
No 46
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.78 E-value=3e-18 Score=121.27 Aligned_cols=93 Identities=20% Similarity=0.352 Sum_probs=79.4
Q ss_pred hcCC-CcEEEEEEcCCChhhhchHHHHH---HHHHHhCCCeEEEEEECCCC-------------HHHHHHcCCCcccEEE
Q 029575 93 LKSE-RPVLVEFVANWCGPCRLVAPAVE---WLAQEYGDRLTVVKIDHDAN-------------PQLIEEYKVYGLPTLI 155 (191)
Q Consensus 93 ~~~~-k~vlv~F~a~wC~~C~~~~p~l~---~l~~~~~~~v~~~~vd~d~~-------------~~~~~~~~v~~~Pt~~ 155 (191)
.+.+ ++++|+||++||++|+.+.+.+. .+.+.+.+++.++.||++.+ .+++.+|+|.++||++
T Consensus 10 ~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~ 89 (125)
T cd02951 10 AADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVI 89 (125)
T ss_pred HHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEE
Confidence 3447 99999999999999999999884 56666666688999998864 6899999999999999
Q ss_pred EEECC--eEEeeeeecCCCCHHHHHHHHHHHhhh
Q 029575 156 LFKNG--QEVPESRREGAITKLKLKEYIDTLLDS 187 (191)
Q Consensus 156 ~~~~g--~~~~~~~~~g~~~~~~l~~~i~~~l~~ 187 (191)
+|+++ +.+ .+..|..+.+++.++|+.+++.
T Consensus 90 ~~~~~gg~~~--~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 90 FLDPEGGKEI--ARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred EEcCCCCcee--EEecCCCCHHHHHHHHHHHHhh
Confidence 99854 555 5889999999999999998764
No 47
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.6e-18 Score=131.99 Aligned_cols=104 Identities=29% Similarity=0.581 Sum_probs=91.0
Q ss_pred cEEcCC-CChhhHHhcC-CCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEE
Q 029575 80 ITEITE-SEFPNTVLKS-ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILF 157 (191)
Q Consensus 80 v~~l~~-~~~~~~~~~~-~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~ 157 (191)
|..+++ .+|...+... .+.++|+|+++||+||+...|.|..++.+|++ ..|++||+|++...+..+||...||+++|
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-aVFlkVdVd~c~~taa~~gV~amPTFiff 81 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-AVFLKVDVDECRGTAATNGVNAMPTFIFF 81 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc-cEEEEEeHHHhhchhhhcCcccCceEEEE
Confidence 455644 5566655543 68999999999999999999999999999987 78999999999999999999999999999
Q ss_pred ECCeEEeeeeecCCCCHHHHHHHHHHHhhh
Q 029575 158 KNGQEVPESRREGAITKLKLKEYIDTLLDS 187 (191)
Q Consensus 158 ~~g~~~~~~~~~g~~~~~~l~~~i~~~l~~ 187 (191)
.+|+++ ..+.|. +...|++.|.++...
T Consensus 82 ~ng~ki--d~~qGA-d~~gLe~kv~~~~st 108 (288)
T KOG0908|consen 82 RNGVKI--DQIQGA-DASGLEEKVAKYAST 108 (288)
T ss_pred ecCeEe--eeecCC-CHHHHHHHHHHHhcc
Confidence 999999 577887 899999999998753
No 48
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.77 E-value=5.1e-18 Score=119.56 Aligned_cols=98 Identities=18% Similarity=0.275 Sum_probs=79.4
Q ss_pred cEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCH-----------HHHHHcC-
Q 029575 80 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANP-----------QLIEEYK- 147 (191)
Q Consensus 80 v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-----------~~~~~~~- 147 (191)
+.+++.+++...+.+ ++.++|+|+++|||+|+.+.|.|++++++. ++.++.||++.+. ++.++|+
T Consensus 8 ~~~it~~~~~~~i~~-~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i 84 (122)
T TIGR01295 8 LEVTTVVRALEALDK-KETATFFIGRKTCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGI 84 (122)
T ss_pred ceecCHHHHHHHHHc-CCcEEEEEECCCChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHHHHHHHHHHcCC
Confidence 578888888877765 788999999999999999999999999984 3667777777432 4556665
Q ss_pred ---CCcccEEEEEECCeEEeeeeecC-CCCHHHHHHHHH
Q 029575 148 ---VYGLPTLILFKNGQEVPESRREG-AITKLKLKEYID 182 (191)
Q Consensus 148 ---v~~~Pt~~~~~~g~~~~~~~~~g-~~~~~~l~~~i~ 182 (191)
|.++||+++|++|+.+ .+..| ..+.++|.+++.
T Consensus 85 ~~~i~~~PT~v~~k~Gk~v--~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 85 PTSFMGTPTFVHITDGKQV--SVRCGSSTTAQELQDIAA 121 (122)
T ss_pred cccCCCCCEEEEEeCCeEE--EEEeCCCCCHHHHHHHhh
Confidence 5569999999999999 46777 557899988864
No 49
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.77 E-value=3.6e-18 Score=143.65 Aligned_cols=107 Identities=19% Similarity=0.368 Sum_probs=90.5
Q ss_pred CCCcEEcCCCChhhHHh--cCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCC-eEEEEEECCCCH-HH-HHHcCCCcc
Q 029575 77 SSGITEITESEFPNTVL--KSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDR-LTVVKIDHDANP-QL-IEEYKVYGL 151 (191)
Q Consensus 77 ~~~v~~l~~~~~~~~~~--~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~vd~d~~~-~~-~~~~~v~~~ 151 (191)
...|.+|+.++|+..+. +.++++||+||++||++|+.+.|.|+++++++.++ +.|+.||+|.+. .+ +++|+|.++
T Consensus 350 ~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~ 429 (463)
T TIGR00424 350 SNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSF 429 (463)
T ss_pred CCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCcc
Confidence 34689999999998874 45889999999999999999999999999999764 899999999753 44 478999999
Q ss_pred cEEEEEECCeEEeeeeec-CCCCHHHHHHHHHHH
Q 029575 152 PTLILFKNGQEVPESRRE-GAITKLKLKEYIDTL 184 (191)
Q Consensus 152 Pt~~~~~~g~~~~~~~~~-g~~~~~~l~~~i~~~ 184 (191)
||+++|++|.... ..|. |..+.+.|..||+.+
T Consensus 430 PTii~Fk~g~~~~-~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 430 PTILFFPKHSSRP-IKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred ceEEEEECCCCCc-eeCCCCCCCHHHHHHHHHhh
Confidence 9999999886432 3576 589999999999864
No 50
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.4e-18 Score=145.57 Aligned_cols=108 Identities=29% Similarity=0.543 Sum_probs=97.8
Q ss_pred CCCcEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCC---CeEEEEEECCCCHHHHHHcCCCcccE
Q 029575 77 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGD---RLTVVKIDHDANPQLIEEYKVYGLPT 153 (191)
Q Consensus 77 ~~~v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~~~~~~~~v~~~Pt 153 (191)
...|.+|+.++|...+.. +..++|.|||+||++|+.+.|.+++.+..+.. .+.+++||+.++.++|.+|+|+++||
T Consensus 24 ~~~Vl~Lt~dnf~~~i~~-~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPT 102 (493)
T KOG0190|consen 24 EEDVLVLTKDNFKETING-HEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPT 102 (493)
T ss_pred ccceEEEecccHHHHhcc-CceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCe
Confidence 344899999999987766 89999999999999999999999999998865 48999999999999999999999999
Q ss_pred EEEEECCeEEeeeeecCCCCHHHHHHHHHHHhhh
Q 029575 154 LILFKNGQEVPESRREGAITKLKLKEYIDTLLDS 187 (191)
Q Consensus 154 ~~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~l~~ 187 (191)
+.+|++|+.. ..|.|.+..+.+..|+.+....
T Consensus 103 lkiFrnG~~~--~~Y~G~r~adgIv~wl~kq~gP 134 (493)
T KOG0190|consen 103 LKIFRNGRSA--QDYNGPREADGIVKWLKKQSGP 134 (493)
T ss_pred EEEEecCCcc--eeccCcccHHHHHHHHHhccCC
Confidence 9999999973 4899999999999999987543
No 51
>PTZ00102 disulphide isomerase; Provisional
Probab=99.77 E-value=4.3e-18 Score=145.32 Aligned_cols=110 Identities=29% Similarity=0.574 Sum_probs=99.3
Q ss_pred CCCcEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCC--CeEEEEEECCCCHHHHHHcCCCcccEE
Q 029575 77 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGD--RLTVVKIDHDANPQLIEEYKVYGLPTL 154 (191)
Q Consensus 77 ~~~v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~~~~~~v~~~Pt~ 154 (191)
...|..|++++|...+.+.++.++|+||++||++|+.+.|.|+++++.+.+ .+.++.+|++.+...++.|+++++||+
T Consensus 356 ~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~ 435 (477)
T PTZ00102 356 DGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTI 435 (477)
T ss_pred CCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeE
Confidence 446899999999998888899999999999999999999999999998865 489999999999999999999999999
Q ss_pred EEEECCeEEeeeeecCCCCHHHHHHHHHHHhhh
Q 029575 155 ILFKNGQEVPESRREGAITKLKLKEYIDTLLDS 187 (191)
Q Consensus 155 ~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~l~~ 187 (191)
++|++|+++. ..+.|.++.+.|.++|+++...
T Consensus 436 ~~~~~~~~~~-~~~~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 436 LFVKAGERTP-IPYEGERTVEGFKEFVNKHATN 467 (477)
T ss_pred EEEECCCcce-eEecCcCCHHHHHHHHHHcCCC
Confidence 9999887653 4789999999999999998753
No 52
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.76 E-value=7.5e-18 Score=142.88 Aligned_cols=105 Identities=31% Similarity=0.578 Sum_probs=94.6
Q ss_pred CcEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCC---CeEEEEEECCCCHHHHHHcCCCcccEEE
Q 029575 79 GITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGD---RLTVVKIDHDANPQLIEEYKVYGLPTLI 155 (191)
Q Consensus 79 ~v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~~~~~~~~v~~~Pt~~ 155 (191)
.|.+|+.++|...+.+ ++.++|+||++||++|+.+.|.+.++++.+.+ ++.|+.|||+.+.+++++|+|.++||++
T Consensus 2 ~v~~l~~~~~~~~i~~-~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 80 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKS-HEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLK 80 (462)
T ss_pred CceECCHHHHHHHHhc-CCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEE
Confidence 3789999999877754 78999999999999999999999999988753 3999999999999999999999999999
Q ss_pred EEECCeE-EeeeeecCCCCHHHHHHHHHHHhh
Q 029575 156 LFKNGQE-VPESRREGAITKLKLKEYIDTLLD 186 (191)
Q Consensus 156 ~~~~g~~-~~~~~~~g~~~~~~l~~~i~~~l~ 186 (191)
+|.+|+. + ..+.|..+.+.|.+|+++.+.
T Consensus 81 ~~~~g~~~~--~~~~g~~~~~~l~~~i~~~~~ 110 (462)
T TIGR01130 81 IFRNGEDSV--SDYNGPRDADGIVKYMKKQSG 110 (462)
T ss_pred EEeCCccce--eEecCCCCHHHHHHHHHHhcC
Confidence 9998887 5 478999999999999999875
No 53
>PLN02309 5'-adenylylsulfate reductase
Probab=99.76 E-value=7.6e-18 Score=141.59 Aligned_cols=106 Identities=21% Similarity=0.416 Sum_probs=91.5
Q ss_pred CCcEEcCCCChhhHHh--cCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCC-CeEEEEEECC-CCHHHHH-HcCCCccc
Q 029575 78 SGITEITESEFPNTVL--KSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHD-ANPQLIE-EYKVYGLP 152 (191)
Q Consensus 78 ~~v~~l~~~~~~~~~~--~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d-~~~~~~~-~~~v~~~P 152 (191)
..|.+|+.++|+..+. +.++.+||+||++||++|+.+.|.|+++++++.+ ++.|+.||++ .+.++++ +|+|.++|
T Consensus 345 ~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~P 424 (457)
T PLN02309 345 QNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFP 424 (457)
T ss_pred CCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceee
Confidence 3589999999998764 4589999999999999999999999999999965 4999999999 7788886 69999999
Q ss_pred EEEEEECCeEEeeeeec-CCCCHHHHHHHHHHH
Q 029575 153 TLILFKNGQEVPESRRE-GAITKLKLKEYIDTL 184 (191)
Q Consensus 153 t~~~~~~g~~~~~~~~~-g~~~~~~l~~~i~~~ 184 (191)
|+++|.+|.... ..|. |..+.+.|.+||+++
T Consensus 425 Til~f~~g~~~~-v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 425 TILLFPKNSSRP-IKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred EEEEEeCCCCCe-eecCCCCcCHHHHHHHHHHh
Confidence 999998776432 4676 468999999999875
No 54
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.75 E-value=8.5e-18 Score=127.11 Aligned_cols=103 Identities=24% Similarity=0.341 Sum_probs=86.3
Q ss_pred CCCCCcEEcCCCChhhHHhcCC--CcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCccc
Q 029575 75 GASSGITEITESEFPNTVLKSE--RPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLP 152 (191)
Q Consensus 75 ~~~~~v~~l~~~~~~~~~~~~~--k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~P 152 (191)
...+.|.+++.++|...+.+.+ .+|||+||++||++|+.+.|.|++++.+|+. +.|++||++.. ...|++.++|
T Consensus 79 ~~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~-vkFvkI~ad~~---~~~~~i~~lP 154 (192)
T cd02988 79 SKFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD-TKFVKIISTQC---IPNYPDKNLP 154 (192)
T ss_pred CCCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC-CEEEEEEhHHh---HhhCCCCCCC
Confidence 3456699999999998877553 5899999999999999999999999999975 99999999863 6899999999
Q ss_pred EEEEEECCeEEeeeeecC-------CCCHHHHHHHHHH
Q 029575 153 TLILFKNGQEVPESRREG-------AITKLKLKEYIDT 183 (191)
Q Consensus 153 t~~~~~~g~~~~~~~~~g-------~~~~~~l~~~i~~ 183 (191)
|+++|++|+.+. ...| ..+.+.|..+|.+
T Consensus 155 Tlliyk~G~~v~--~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 155 TILVYRNGDIVK--QFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred EEEEEECCEEEE--EEeCchhhCCCCCCHHHHHHHHHh
Confidence 999999999884 4444 4566777776654
No 55
>PTZ00102 disulphide isomerase; Provisional
Probab=99.75 E-value=1.5e-17 Score=142.05 Aligned_cols=105 Identities=29% Similarity=0.535 Sum_probs=94.7
Q ss_pred CcEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhC---CCeEEEEEECCCCHHHHHHcCCCcccEEE
Q 029575 79 GITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYG---DRLTVVKIDHDANPQLIEEYKVYGLPTLI 155 (191)
Q Consensus 79 ~v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~---~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~ 155 (191)
.+..++.++|...+.+ ++.++|+||++||++|+++.|.|.++++.+. .++.|+.|||+.+.+++++|+|.++||++
T Consensus 33 ~v~~l~~~~f~~~i~~-~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~ 111 (477)
T PTZ00102 33 HVTVLTDSTFDKFITE-NEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIK 111 (477)
T ss_pred CcEEcchhhHHHHHhc-CCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEE
Confidence 4889999999987755 7899999999999999999999999988764 35999999999999999999999999999
Q ss_pred EEECCeEEeeeeecCCCCHHHHHHHHHHHhhh
Q 029575 156 LFKNGQEVPESRREGAITKLKLKEYIDTLLDS 187 (191)
Q Consensus 156 ~~~~g~~~~~~~~~g~~~~~~l~~~i~~~l~~ 187 (191)
+|++|+.+ .+.|..+.+.|.+|++++++.
T Consensus 112 ~~~~g~~~---~y~g~~~~~~l~~~l~~~~~~ 140 (477)
T PTZ00102 112 FFNKGNPV---NYSGGRTADGIVSWIKKLTGP 140 (477)
T ss_pred EEECCceE---EecCCCCHHHHHHHHHHhhCC
Confidence 99998776 789999999999999998753
No 56
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.75 E-value=4.1e-17 Score=107.95 Aligned_cols=91 Identities=47% Similarity=0.879 Sum_probs=80.0
Q ss_pred ChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEEeee
Q 029575 87 EFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPES 166 (191)
Q Consensus 87 ~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~ 166 (191)
+|...+.. +++++|+||++||++|+.+.+.++++.+. ..++.|+.+|++.+..++++|++.++|+++++.+|+.+ .
T Consensus 2 ~~~~~~~~-~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~--~ 77 (93)
T cd02947 2 EFEELIKS-AKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEV--D 77 (93)
T ss_pred chHHHHhc-CCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEE--E
Confidence 44544544 48999999999999999999999999988 45699999999999999999999999999999999877 5
Q ss_pred eecCCCCHHHHHHHH
Q 029575 167 RREGAITKLKLKEYI 181 (191)
Q Consensus 167 ~~~g~~~~~~l~~~i 181 (191)
.+.|..+.+.|.++|
T Consensus 78 ~~~g~~~~~~l~~~i 92 (93)
T cd02947 78 RVVGADPKEELEEFL 92 (93)
T ss_pred EEecCCCHHHHHHHh
Confidence 788888888888876
No 57
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.74 E-value=1.6e-17 Score=115.06 Aligned_cols=99 Identities=22% Similarity=0.299 Sum_probs=79.4
Q ss_pred cEEcCCCChhhHHhcCCCcEEEEEEc--CCCh---hhhchHHHHHHHHHHhCCCeEEEEEECC-----CCHHHHHHcCCC
Q 029575 80 ITEITESEFPNTVLKSERPVLVEFVA--NWCG---PCRLVAPAVEWLAQEYGDRLTVVKIDHD-----ANPQLIEEYKVY 149 (191)
Q Consensus 80 v~~l~~~~~~~~~~~~~k~vlv~F~a--~wC~---~C~~~~p~l~~l~~~~~~~v~~~~vd~d-----~~~~~~~~~~v~ 149 (191)
+.+|+..+|+..+.+ ++.+||.||+ +||+ +|+++.|.+.+.+. .+.+++||++ ++.+++++|+|.
T Consensus 3 ~v~L~~~nF~~~v~~-~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~----~v~lakVd~~d~~~~~~~~L~~~y~I~ 77 (116)
T cd03007 3 CVDLDTVTFYKVIPK-FKYSLVKFDTAYPYGEKHEAFTRLAESSASATD----DLLVAEVGIKDYGEKLNMELGERYKLD 77 (116)
T ss_pred eeECChhhHHHHHhc-CCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC----ceEEEEEecccccchhhHHHHHHhCCC
Confidence 789999999987755 7999999999 7887 55555555544432 3889999994 568899999999
Q ss_pred --cccEEEEEECCeE-EeeeeecCC-CCHHHHHHHHHHH
Q 029575 150 --GLPTLILFKNGQE-VPESRREGA-ITKLKLKEYIDTL 184 (191)
Q Consensus 150 --~~Pt~~~~~~g~~-~~~~~~~g~-~~~~~l~~~i~~~ 184 (191)
++||+++|.+|.. .. ..|.|. ++.+.|.+||.+.
T Consensus 78 ~~gyPTl~lF~~g~~~~~-~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 78 KESYPVIYLFHGGDFENP-VPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred cCCCCEEEEEeCCCcCCC-ccCCCCcccHHHHHHHHHhc
Confidence 9999999998852 11 378896 9999999999864
No 58
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.73 E-value=8.5e-17 Score=121.34 Aligned_cols=115 Identities=23% Similarity=0.405 Sum_probs=84.7
Q ss_pred hhccCcccccccccCCCCCcEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCH
Q 029575 61 YNNSLPKLAIRVRCGASSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANP 140 (191)
Q Consensus 61 ~~~~~p~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~ 140 (191)
.+.++|.|++....+. ++.+.......+++++|+||++||++|++++|.+.++.++ ++.++.|+.+++.
T Consensus 41 ~g~~~p~f~l~~~~g~--------g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~ 109 (185)
T PRK15412 41 IGKPVPKFRLESLENP--------GQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDR 109 (185)
T ss_pred cCCCCCCcCCccCCCC--------CccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCH
Confidence 4567888874333210 1222222222489999999999999999999999998653 4778888865432
Q ss_pred -----------------------HHHHHcCCCcccEEEEEE-CCeEEeeeeecCCCCHHHHHHHHHHHhhhh
Q 029575 141 -----------------------QLIEEYKVYGLPTLILFK-NGQEVPESRREGAITKLKLKEYIDTLLDSI 188 (191)
Q Consensus 141 -----------------------~~~~~~~v~~~Pt~~~~~-~g~~~~~~~~~g~~~~~~l~~~i~~~l~~~ 188 (191)
.+...|+|.++|++++++ +|+.+ ..+.|..+.+++.+.|+.+++..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G~i~--~~~~G~~~~~~l~~~i~~~~~~~ 179 (185)
T PRK15412 110 QKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIR--YRHAGDLNPRVWESEIKPLWEKY 179 (185)
T ss_pred HHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCCeEEEECCCceEE--EEEecCCCHHHHHHHHHHHHHHH
Confidence 245578999999999997 66655 68999999999999999998754
No 59
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.72 E-value=1.1e-16 Score=104.75 Aligned_cols=81 Identities=35% Similarity=0.459 Sum_probs=72.5
Q ss_pred EEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEEeeeeecCCCCHHHHH
Q 029575 99 VLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLK 178 (191)
Q Consensus 99 vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~~l~ 178 (191)
.+..||++||++|+.+.+.+++++++++.++.++.||.+++++++++|++.++|++++ +|+ . ++.|..+.+++.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~-~---~~~G~~~~~~l~ 75 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD-V---EFIGAPTKEELV 75 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE-E---EEecCCCHHHHH
Confidence 4778999999999999999999999997779999999999999999999999999976 665 2 578888999999
Q ss_pred HHHHHHh
Q 029575 179 EYIDTLL 185 (191)
Q Consensus 179 ~~i~~~l 185 (191)
++|++.+
T Consensus 76 ~~l~~~~ 82 (82)
T TIGR00411 76 EAIKKRL 82 (82)
T ss_pred HHHHhhC
Confidence 9998764
No 60
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.71 E-value=8.4e-17 Score=109.76 Aligned_cols=88 Identities=20% Similarity=0.342 Sum_probs=79.2
Q ss_pred CCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCC--cccEEEEEEC--CeEEeeeeecCC
Q 029575 96 ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVY--GLPTLILFKN--GQEVPESRREGA 171 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~--~~Pt~~~~~~--g~~~~~~~~~g~ 171 (191)
++++++.|+++||++|+.+.+.++++++++.+++.|+.||+++++.+++.|+|. ++|+++++++ |++. ....|.
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~--~~~~~~ 89 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKY--LMPEEE 89 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEeccccccc--CCCccc
Confidence 689999999999999999999999999999988999999999999999999999 9999999987 6665 344555
Q ss_pred CCHHHHHHHHHHHh
Q 029575 172 ITKLKLKEYIDTLL 185 (191)
Q Consensus 172 ~~~~~l~~~i~~~l 185 (191)
.+.+.|.+||++++
T Consensus 90 ~~~~~l~~fi~~~~ 103 (103)
T cd02982 90 LTAESLEEFVEDFL 103 (103)
T ss_pred cCHHHHHHHHHhhC
Confidence 69999999998764
No 61
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.70 E-value=1e-16 Score=111.87 Aligned_cols=93 Identities=19% Similarity=0.393 Sum_probs=74.7
Q ss_pred CChhhHHhcC-CCcEEEEEEc-------CCChhhhchHHHHHHHHHHhCCCeEEEEEECCC-------CHHHHHHcCCC-
Q 029575 86 SEFPNTVLKS-ERPVLVEFVA-------NWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDA-------NPQLIEEYKVY- 149 (191)
Q Consensus 86 ~~~~~~~~~~-~k~vlv~F~a-------~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~-------~~~~~~~~~v~- 149 (191)
++|...+... +++++|+||| +||++|+.+.|.++++..++++++.|+.||+++ +.++..+|+|.
T Consensus 10 ~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~ 89 (119)
T cd02952 10 EEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTT 89 (119)
T ss_pred HHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCccc
Confidence 4555555533 6899999999 999999999999999999998779999999976 45899999998
Q ss_pred cccEEEEEECCeEEeeeeecCCCCHHHHHHHH
Q 029575 150 GLPTLILFKNGQEVPESRREGAITKLKLKEYI 181 (191)
Q Consensus 150 ~~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~i 181 (191)
++||+++|++|+++ ....-++.+.+..|+
T Consensus 90 ~iPT~~~~~~~~~l---~~~~c~~~~~~~~~~ 118 (119)
T cd02952 90 GVPTLLRWKTPQRL---VEDECLQADLVEMFF 118 (119)
T ss_pred CCCEEEEEcCCcee---cchhhcCHHHHHHhh
Confidence 99999999888766 233334555555543
No 62
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.69 E-value=3.7e-16 Score=116.61 Aligned_cols=114 Identities=25% Similarity=0.446 Sum_probs=83.8
Q ss_pred hhhccCcccccccccCCCCCcEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECC--
Q 029575 60 SYNNSLPKLAIRVRCGASSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHD-- 137 (191)
Q Consensus 60 ~~~~~~p~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d-- 137 (191)
..+.++|.|++....|.. . .+.......+++++|+||++||++|+.+.|.++++.++ ++.++.|+.+
T Consensus 35 ~vG~~ap~f~l~~~~G~~---~-----~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~ 103 (173)
T TIGR00385 35 LIGKPVPAFPLAALREPL---Q-----AYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQ 103 (173)
T ss_pred hcCCCCCCccccccCCCC---c-----ccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCC
Confidence 456678888864433321 1 22212222479999999999999999999999998763 3666666643
Q ss_pred ---------------------CCHHHHHHcCCCcccEEEEEE-CCeEEeeeeecCCCCHHHHHHHHHHHhh
Q 029575 138 ---------------------ANPQLIEEYKVYGLPTLILFK-NGQEVPESRREGAITKLKLKEYIDTLLD 186 (191)
Q Consensus 138 ---------------------~~~~~~~~~~v~~~Pt~~~~~-~g~~~~~~~~~g~~~~~~l~~~i~~~l~ 186 (191)
.+..+.+.|++.++|++++++ +|+.+ ..+.|..+.+++.++|++++.
T Consensus 104 ~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~i~--~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 104 SQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAPETFLVDGNGVIL--YRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred hHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCCeEEEEcCCceEE--EEEeccCCHHHHHHHHHHHhh
Confidence 333567789999999988887 66655 688999999999999999885
No 63
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=5.6e-17 Score=136.06 Aligned_cols=105 Identities=35% Similarity=0.629 Sum_probs=91.8
Q ss_pred CCcEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCC--CeEEEEEECCCCHHHHHHcCCCcccEEE
Q 029575 78 SGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGD--RLTVVKIDHDANPQLIEEYKVYGLPTLI 155 (191)
Q Consensus 78 ~~v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~~~~~~v~~~Pt~~ 155 (191)
..|..+.+++|+..+...+|-|+|.|||+||+||+++.|.|++|++.|.+ ++.++++|.+.|. ...+.+.++||++
T Consensus 366 ~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd--~~~~~~~~fPTI~ 443 (493)
T KOG0190|consen 366 SPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND--VPSLKVDGFPTIL 443 (493)
T ss_pred CCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc--CccccccccceEE
Confidence 45899999999999999999999999999999999999999999999976 4999999999875 3345777899999
Q ss_pred EEECCeEEeeeeecCCCCHHHHHHHHHHH
Q 029575 156 LFKNGQEVPESRREGAITKLKLKEYIDTL 184 (191)
Q Consensus 156 ~~~~g~~~~~~~~~g~~~~~~l~~~i~~~ 184 (191)
++..|.+..-..|.|.++.++|..+|++.
T Consensus 444 ~~pag~k~~pv~y~g~R~le~~~~fi~~~ 472 (493)
T KOG0190|consen 444 FFPAGHKSNPVIYNGDRTLEDLKKFIKKS 472 (493)
T ss_pred EecCCCCCCCcccCCCcchHHHHhhhccC
Confidence 99876643225899999999999999875
No 64
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.68 E-value=2.5e-16 Score=133.57 Aligned_cols=108 Identities=30% Similarity=0.549 Sum_probs=94.9
Q ss_pred CCCcEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCC---CeEEEEEECCCCHHHHHHcCCCcccE
Q 029575 77 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGD---RLTVVKIDHDANPQLIEEYKVYGLPT 153 (191)
Q Consensus 77 ~~~v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~~~~~~~~v~~~Pt 153 (191)
...+..|+..+|...+.+.++.++|+||++||++|+.+.|.++++++.+.+ ++.|+.+|++.+. +.. ++|.++|+
T Consensus 345 ~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~Pt 422 (462)
T TIGR01130 345 EGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFPT 422 (462)
T ss_pred CCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccCE
Confidence 446889999999999888899999999999999999999999999999987 6999999999764 444 99999999
Q ss_pred EEEEECCeEEeeeeecCCCCHHHHHHHHHHHhh
Q 029575 154 LILFKNGQEVPESRREGAITKLKLKEYIDTLLD 186 (191)
Q Consensus 154 ~~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~l~ 186 (191)
+++|++|++.....+.|..+.+.|.+||++...
T Consensus 423 ~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 455 (462)
T TIGR01130 423 IKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHAT 455 (462)
T ss_pred EEEEeCCCCcCceEecCcCCHHHHHHHHHhcCC
Confidence 999998876322478899999999999998764
No 65
>PTZ00062 glutaredoxin; Provisional
Probab=99.68 E-value=2.9e-16 Score=119.35 Aligned_cols=90 Identities=10% Similarity=0.115 Sum_probs=76.1
Q ss_pred CCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEEe
Q 029575 85 ESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVP 164 (191)
Q Consensus 85 ~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 164 (191)
.+++...+..+.+.++++||++||++|+.+.+.+.+++++|++ +.|+.||.+ |+|.++|++++|++|+.+
T Consensus 6 ~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~-~~F~~V~~d--------~~V~~vPtfv~~~~g~~i- 75 (204)
T PTZ00062 6 KEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS-LEFYVVNLA--------DANNEYGVFEFYQNSQLI- 75 (204)
T ss_pred HHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC-cEEEEEccc--------cCcccceEEEEEECCEEE-
Confidence 4556655554347899999999999999999999999999976 999999987 999999999999999999
Q ss_pred eeeecCCCCHHHHHHHHHHHhh
Q 029575 165 ESRREGAITKLKLKEYIDTLLD 186 (191)
Q Consensus 165 ~~~~~g~~~~~~l~~~i~~~l~ 186 (191)
.+..|. ++.++..++.++..
T Consensus 76 -~r~~G~-~~~~~~~~~~~~~~ 95 (204)
T PTZ00062 76 -NSLEGC-NTSTLVSFIRGWAQ 95 (204)
T ss_pred -eeeeCC-CHHHHHHHHHHHcC
Confidence 477776 67778777776644
No 66
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.67 E-value=1e-16 Score=112.18 Aligned_cols=99 Identities=17% Similarity=0.375 Sum_probs=75.4
Q ss_pred hHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCH-HHHHHcCCCc--ccEEEEEE-CCeEEee
Q 029575 90 NTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANP-QLIEEYKVYG--LPTLILFK-NGQEVPE 165 (191)
Q Consensus 90 ~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-~~~~~~~v~~--~Pt~~~~~-~g~~~~~ 165 (191)
......+++++|+||++||++|+.+.|.+.+..........|+.|+++.+. .....|++.+ +||+++|+ +|+.+.+
T Consensus 13 ~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~ 92 (117)
T cd02959 13 KEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPE 92 (117)
T ss_pred HHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchh
Confidence 344455899999999999999999999999977655333456666666553 4567899987 99999997 7777642
Q ss_pred -eeecCCCCHHHHHHHHHHHhhhh
Q 029575 166 -SRREGAITKLKLKEYIDTLLDSI 188 (191)
Q Consensus 166 -~~~~g~~~~~~l~~~i~~~l~~~ 188 (191)
....|..+.+.+...|+.+.+++
T Consensus 93 ~~~~~~~~~~~~f~~~~~~~~~~~ 116 (117)
T cd02959 93 IINKKGNPNYKYFYSSAAQVTESM 116 (117)
T ss_pred hccCCCCccccccCCCHHHHHhhc
Confidence 25677778888888888877653
No 67
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.67 E-value=7e-16 Score=131.44 Aligned_cols=108 Identities=19% Similarity=0.312 Sum_probs=84.1
Q ss_pred hccCcccccccccCCCCCcEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCC-CeEEEEEE-----
Q 029575 62 NNSLPKLAIRVRCGASSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGD-RLTVVKID----- 135 (191)
Q Consensus 62 ~~~~p~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd----- 135 (191)
...+|.|.+....+ .... ++.+|++||+||++||++|+.++|.|+++++++.. ++.|+.|.
T Consensus 35 ~~~lP~f~l~D~dG----------~~v~---lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~ 101 (521)
T PRK14018 35 PHTLSTLKTADNRP----------ASVY---LKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFL 101 (521)
T ss_pred cCCCCCeEeecCCC----------ceee---ccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEeccccc
Confidence 34678887544443 3222 12489999999999999999999999999999863 46666553
Q ss_pred -----------------------CCCCHHHHHHcCCCcccEEEEEE-CCeEEeeeeecCCCCHHHHHHHHHHH
Q 029575 136 -----------------------HDANPQLIEEYKVYGLPTLILFK-NGQEVPESRREGAITKLKLKEYIDTL 184 (191)
Q Consensus 136 -----------------------~d~~~~~~~~~~v~~~Pt~~~~~-~g~~~~~~~~~g~~~~~~l~~~i~~~ 184 (191)
+|.+..+++.|+|.++|++++++ +|+.+ ..+.|..+.++|.++|+..
T Consensus 102 ~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV--~~~~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 102 HEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQ--RIVKGSISEAQALALIRNP 172 (521)
T ss_pred ccccHHHHHHHHHhCCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCeEE--EEEeCCCCHHHHHHHHHHh
Confidence 34556788999999999998886 67666 6899999999999999843
No 68
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.65 E-value=3.3e-15 Score=109.01 Aligned_cols=87 Identities=24% Similarity=0.455 Sum_probs=68.6
Q ss_pred CCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCC------------HHHH-HHc---CCCcccEEEEEE-
Q 029575 96 ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDAN------------PQLI-EEY---KVYGLPTLILFK- 158 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~------------~~~~-~~~---~v~~~Pt~~~~~- 158 (191)
++..+|+||++||++|++++|.+++++++++ +.++.|+.|.. .+.. ..| ++.++|++++++
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~ 127 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV 127 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence 5677999999999999999999999999985 55555655532 2333 345 889999999998
Q ss_pred CCeEEeeeeecCCCCHHHHHHHHHHHh
Q 029575 159 NGQEVPESRREGAITKLKLKEYIDTLL 185 (191)
Q Consensus 159 ~g~~~~~~~~~g~~~~~~l~~~i~~~l 185 (191)
+|+.+. ..+.|..+.+++.+.|+++|
T Consensus 128 ~G~~i~-~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 128 NTRKAY-PVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred CCCEEE-EEeecccCHHHHHHHHHHhC
Confidence 456542 46899999999999988764
No 69
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.64 E-value=7.8e-16 Score=120.52 Aligned_cols=102 Identities=25% Similarity=0.470 Sum_probs=89.3
Q ss_pred CCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHh----C-CCeEEEEEECCCCHHHHHHcCCCcccEEEEEE
Q 029575 84 TESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEY----G-DRLTVVKIDHDANPQLIEEYKVYGLPTLILFK 158 (191)
Q Consensus 84 ~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~----~-~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~ 158 (191)
+.++++..+.. ..+++|+|||+||+..+.++|.|++.+..+ + +++.++.|||+.+..++.+|.|..|||+.+|.
T Consensus 2 t~~N~~~il~s-~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 2 TSENIDSILDS-NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred ccccHHHhhcc-ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 44566655544 899999999999999999999999887765 4 36999999999999999999999999999999
Q ss_pred CCeEEeeeeecCCCCHHHHHHHHHHHhhh
Q 029575 159 NGQEVPESRREGAITKLKLKEYIDTLLDS 187 (191)
Q Consensus 159 ~g~~~~~~~~~g~~~~~~l~~~i~~~l~~ 187 (191)
+|.... ..|.|.++.+.|.++|++.++.
T Consensus 81 nG~~~~-rEYRg~RsVeaL~efi~kq~s~ 108 (375)
T KOG0912|consen 81 NGEMMK-REYRGQRSVEALIEFIEKQLSD 108 (375)
T ss_pred ccchhh-hhhccchhHHHHHHHHHHHhcc
Confidence 999885 3799999999999999998753
No 70
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.64 E-value=1.8e-15 Score=116.74 Aligned_cols=90 Identities=20% Similarity=0.350 Sum_probs=77.8
Q ss_pred CCcEEEEEEc---CCChhhhchHHHHHHHHHHhCC-CeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEEeeeeecCC
Q 029575 96 ERPVLVEFVA---NWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGA 171 (191)
Q Consensus 96 ~k~vlv~F~a---~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~ 171 (191)
+...++.|++ +||++|+.+.|.++++++++++ .+.++.+|.+++++++++|+|.++||+++|++|+.+. .++.|.
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~-~~~~G~ 97 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGG-IRYTGI 97 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeE-EEEeec
Confidence 4566777888 9999999999999999999964 2557777777999999999999999999999998862 378999
Q ss_pred CCHHHHHHHHHHHhh
Q 029575 172 ITKLKLKEYIDTLLD 186 (191)
Q Consensus 172 ~~~~~l~~~i~~~l~ 186 (191)
.+.+++.++|+++++
T Consensus 98 ~~~~~l~~~i~~~~~ 112 (215)
T TIGR02187 98 PAGYEFAALIEDIVR 112 (215)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998864
No 71
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.64 E-value=2.8e-16 Score=123.11 Aligned_cols=87 Identities=25% Similarity=0.524 Sum_probs=78.7
Q ss_pred CCCcEEEEEEcCCChhhhchHHHHHHHHHHhCC---CeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEEeeeeecCC
Q 029575 95 SERPVLVEFVANWCGPCRLVAPAVEWLAQEYGD---RLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGA 171 (191)
Q Consensus 95 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~ 171 (191)
++..++|.||++||++|+++.|.|.++.-++++ -+++.++|+...+.++.+|+|+++||+.+|++|-.+ .|.|.
T Consensus 42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~---dYRG~ 118 (468)
T KOG4277|consen 42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAI---DYRGG 118 (468)
T ss_pred cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeee---ecCCC
Confidence 378999999999999999999999999877755 389999999999999999999999999999887666 78999
Q ss_pred CCHHHHHHHHHHH
Q 029575 172 ITKLKLKEYIDTL 184 (191)
Q Consensus 172 ~~~~~l~~~i~~~ 184 (191)
+.++.+.+|-.+.
T Consensus 119 R~Kd~iieFAhR~ 131 (468)
T KOG4277|consen 119 REKDAIIEFAHRC 131 (468)
T ss_pred ccHHHHHHHHHhc
Confidence 9999999987664
No 72
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.64 E-value=2.4e-15 Score=106.46 Aligned_cols=78 Identities=27% Similarity=0.511 Sum_probs=64.2
Q ss_pred CCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEEC-----------------------CCCHHHHHHcCCCccc
Q 029575 96 ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDH-----------------------DANPQLIEEYKVYGLP 152 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~-----------------------d~~~~~~~~~~v~~~P 152 (191)
+++++|+||++||++|+.+.|.++++.++++ +.++.|+. |.+..+++.|++.++|
T Consensus 25 gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P 102 (127)
T cd03010 25 GKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVP 102 (127)
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCC
Confidence 7899999999999999999999999988863 66666663 4455678889999999
Q ss_pred EEEEEE-CCeEEeeeeecCCCCHHHH
Q 029575 153 TLILFK-NGQEVPESRREGAITKLKL 177 (191)
Q Consensus 153 t~~~~~-~g~~~~~~~~~g~~~~~~l 177 (191)
+.++++ +|+.+ ..+.|..+.+.|
T Consensus 103 ~~~~ld~~G~v~--~~~~G~~~~~~~ 126 (127)
T cd03010 103 ETFLIDGDGIIR--YKHVGPLTPEVW 126 (127)
T ss_pred eEEEECCCceEE--EEEeccCChHhc
Confidence 888887 66655 688898887754
No 73
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.64 E-value=5.1e-15 Score=110.04 Aligned_cols=112 Identities=25% Similarity=0.542 Sum_probs=88.2
Q ss_pred hhhccCcccccccccCCCCCcEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCC-CeEEEEEECCC
Q 029575 60 SYNNSLPKLAIRVRCGASSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHDA 138 (191)
Q Consensus 60 ~~~~~~p~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~ 138 (191)
..+..+|+++ +..++++.+..... .+++++|+||++||++|+...+.+.++.+++.+ ++.++.|++|.
T Consensus 36 ~~g~~~p~~~----------~~~~~g~~~~l~~~-~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~ 104 (173)
T PRK03147 36 QVGKEAPNFV----------LTDLEGKKIELKDL-KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDE 104 (173)
T ss_pred CCCCCCCCcE----------eecCCCCEEeHHHc-CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 3455677776 45556655543333 378999999999999999999999999999976 48888888753
Q ss_pred ----------------------CHHHHHHcCCCcccEEEEEE-CCeEEeeeeecCCCCHHHHHHHHHHH
Q 029575 139 ----------------------NPQLIEEYKVYGLPTLILFK-NGQEVPESRREGAITKLKLKEYIDTL 184 (191)
Q Consensus 139 ----------------------~~~~~~~~~v~~~Pt~~~~~-~g~~~~~~~~~g~~~~~~l~~~i~~~ 184 (191)
+.++.+.|++.++|++++++ +|+.+ ..+.|..+.+++.++++++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~--~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 105 TELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVV--KVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCcCeEEEECCCCcEE--EEEeCCCCHHHHHHHHHHh
Confidence 34678999999999999998 55554 5779999999999998875
No 74
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.60 E-value=1.1e-14 Score=115.66 Aligned_cols=88 Identities=18% Similarity=0.311 Sum_probs=74.7
Q ss_pred CCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCC-----------CHHHHHHcCCCcccEEEEEEC-CeEE
Q 029575 96 ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDA-----------NPQLIEEYKVYGLPTLILFKN-GQEV 163 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~-----------~~~~~~~~~v~~~Pt~~~~~~-g~~~ 163 (191)
++++||+||++||++|+.+.|.|++++++|+ +.++.|++|. +..++++|+|.++|+++++++ |+.+
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v 243 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQF 243 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEE
Confidence 7899999999999999999999999999996 5666666654 356899999999999999986 6665
Q ss_pred eeeeecCCCCHHHHHHHHHHHhh
Q 029575 164 PESRREGAITKLKLKEYIDTLLD 186 (191)
Q Consensus 164 ~~~~~~g~~~~~~l~~~i~~~l~ 186 (191)
. ....|..+.++|.+.|..+..
T Consensus 244 ~-~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 244 T-PIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred E-EEEeCCCCHHHHHHHHHHHhc
Confidence 3 467799999999999887654
No 75
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.59 E-value=1.9e-15 Score=104.65 Aligned_cols=86 Identities=23% Similarity=0.482 Sum_probs=64.9
Q ss_pred cCCCcEEEEEEcCCChhhhchHHHHHHHH---HHhCCCeEEEEEECCCC--------------------HHHHHHcCCCc
Q 029575 94 KSERPVLVEFVANWCGPCRLVAPAVEWLA---QEYGDRLTVVKIDHDAN--------------------PQLIEEYKVYG 150 (191)
Q Consensus 94 ~~~k~vlv~F~a~wC~~C~~~~p~l~~l~---~~~~~~v~~~~vd~d~~--------------------~~~~~~~~v~~ 150 (191)
.++++++++||++||++|+++.+.+.+.. ..+.+++.++.++++.. .+++++|+|.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 35899999999999999999999998643 34444578888887643 35889999999
Q ss_pred ccEEEEEE-CCeEEeeeeecCCCCHHHHHHHH
Q 029575 151 LPTLILFK-NGQEVPESRREGAITKLKLKEYI 181 (191)
Q Consensus 151 ~Pt~~~~~-~g~~~~~~~~~g~~~~~~l~~~i 181 (191)
+||+++++ +|+.+ ....|..+.++|.++|
T Consensus 83 tPt~~~~d~~G~~v--~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIV--YRIPGYLSPEELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEE--EEEESS--HHHHHHHH
T ss_pred cCEEEEEcCCCCEE--EEecCCCCHHHHHhhC
Confidence 99999997 78877 5789999999998875
No 76
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.58 E-value=1.4e-14 Score=111.67 Aligned_cols=82 Identities=26% Similarity=0.370 Sum_probs=71.5
Q ss_pred CCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEEeeeeecCCCCHH
Q 029575 96 ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKL 175 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~ 175 (191)
+...++.||++||++|+.+.+.+++++.+++ ++.+..+|.+++++++.+|+|.++||++++++|+. +.|....+
T Consensus 133 ~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~-~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~-----~~G~~~~~ 206 (215)
T TIGR02187 133 EPVRIEVFVTPTCPYCPYAVLMAHKFALAND-KILGEMIEANENPDLAEKYGVMSVPKIVINKGVEE-----FVGAYPEE 206 (215)
T ss_pred CCcEEEEEECCCCCCcHHHHHHHHHHHHhcC-ceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE-----EECCCCHH
Confidence 4556666999999999999999999998864 59999999999999999999999999999876643 67888999
Q ss_pred HHHHHHHH
Q 029575 176 KLKEYIDT 183 (191)
Q Consensus 176 ~l~~~i~~ 183 (191)
+|.++|..
T Consensus 207 ~l~~~l~~ 214 (215)
T TIGR02187 207 QFLEYILS 214 (215)
T ss_pred HHHHHHHh
Confidence 99998875
No 77
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.1e-14 Score=121.42 Aligned_cols=107 Identities=32% Similarity=0.600 Sum_probs=94.5
Q ss_pred cEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEEC
Q 029575 80 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKN 159 (191)
Q Consensus 80 v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~ 159 (191)
...++...+.......++.++|+||++||++|+.+.|.|+++++.+.+.+.+..||++.+.+++++|+|.++||+.+|..
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~ 110 (383)
T KOG0191|consen 31 VSELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRP 110 (383)
T ss_pred hhhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcC
Confidence 44555677777777779999999999999999999999999999999899999999999999999999999999999998
Q ss_pred CeEEeeeeecCCCCHHHHHHHHHHHhhhh
Q 029575 160 GQEVPESRREGAITKLKLKEYIDTLLDSI 188 (191)
Q Consensus 160 g~~~~~~~~~g~~~~~~l~~~i~~~l~~~ 188 (191)
|... ..+.|..+.+.+.+++...++..
T Consensus 111 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 137 (383)
T KOG0191|consen 111 GKKP--IDYSGPRNAESLAEFLIKELEPS 137 (383)
T ss_pred CCce--eeccCcccHHHHHHHHHHhhccc
Confidence 8434 47888999999999998877643
No 78
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.57 E-value=2.5e-14 Score=96.16 Aligned_cols=67 Identities=33% Similarity=0.735 Sum_probs=56.2
Q ss_pred CCcEEEEEEcCCChhhhchHHHHHHHHHHhC--CCeEEEEEECCCCH-------------------------HHHHHcCC
Q 029575 96 ERPVLVEFVANWCGPCRLVAPAVEWLAQEYG--DRLTVVKIDHDANP-------------------------QLIEEYKV 148 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~~~-------------------------~~~~~~~v 148 (191)
||+++|+||++||++|+.+.|.+.++.++++ +++.|+.|+.|+.. .+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 5899999999999999999999999999999 57999999987642 37778999
Q ss_pred CcccEEEEEECCeE
Q 029575 149 YGLPTLILFKNGQE 162 (191)
Q Consensus 149 ~~~Pt~~~~~~g~~ 162 (191)
.++|++++++.++.
T Consensus 81 ~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 81 NGIPTLVLLDPDGK 94 (95)
T ss_dssp TSSSEEEEEETTSB
T ss_pred CcCCEEEEECCCCC
Confidence 99999999985543
No 79
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.57 E-value=1.8e-14 Score=125.41 Aligned_cols=99 Identities=27% Similarity=0.594 Sum_probs=80.5
Q ss_pred CChhhHHh---cCCCcEEEEEEcCCChhhhchHHHH---HHHHHHhCCCeEEEEEECCCC----HHHHHHcCCCcccEEE
Q 029575 86 SEFPNTVL---KSERPVLVEFVANWCGPCRLVAPAV---EWLAQEYGDRLTVVKIDHDAN----PQLIEEYKVYGLPTLI 155 (191)
Q Consensus 86 ~~~~~~~~---~~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~----~~~~~~~~v~~~Pt~~ 155 (191)
++++..+. ..+|+++|+||++||++|+.+.+.. .++.+.+++ +.++++|++++ .+++++|++.++||++
T Consensus 461 ~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~-~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~ 539 (571)
T PRK00293 461 AELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD-TVLLQADVTANNAEDVALLKHYNVLGLPTIL 539 (571)
T ss_pred HHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC-CEEEEEECCCCChhhHHHHHHcCCCCCCEEE
Confidence 44554443 3478999999999999999998875 677777764 88999999853 5789999999999999
Q ss_pred EEE-CCeEEeeeeecCCCCHHHHHHHHHHHh
Q 029575 156 LFK-NGQEVPESRREGAITKLKLKEYIDTLL 185 (191)
Q Consensus 156 ~~~-~g~~~~~~~~~g~~~~~~l~~~i~~~l 185 (191)
+|+ +|+++...+..|..+.+++.++++++.
T Consensus 540 ~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 540 FFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred EECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 997 677643357899999999999999864
No 80
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.57 E-value=3.8e-14 Score=102.49 Aligned_cols=68 Identities=28% Similarity=0.470 Sum_probs=56.7
Q ss_pred CCcEEEEEEcCCChhhhchHHHHHHHHHHhCC--------CeEEEEEECCCCH-------------------------HH
Q 029575 96 ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGD--------RLTVVKIDHDANP-------------------------QL 142 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~--------~v~~~~vd~d~~~-------------------------~~ 142 (191)
+|+++|+|||+||++|++++|.|.++++++.+ ++.++.|+.|++. .+
T Consensus 25 gk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~l 104 (146)
T cd03008 25 NRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRREL 104 (146)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHHH
Confidence 79999999999999999999999998876643 4889999876432 46
Q ss_pred HHHcCCCcccEEEEEE-CCeEE
Q 029575 143 IEEYKVYGLPTLILFK-NGQEV 163 (191)
Q Consensus 143 ~~~~~v~~~Pt~~~~~-~g~~~ 163 (191)
+.+|++.++|++++++ +|+.+
T Consensus 105 ~~~y~v~~iPt~vlId~~G~Vv 126 (146)
T cd03008 105 EAQFSVEELPTVVVLKPDGDVL 126 (146)
T ss_pred HHHcCCCCCCEEEEECCCCcEE
Confidence 7788999999999998 55544
No 81
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.57 E-value=3.5e-14 Score=99.77 Aligned_cols=96 Identities=27% Similarity=0.497 Sum_probs=73.0
Q ss_pred cEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEE---------------------CCC
Q 029575 80 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKID---------------------HDA 138 (191)
Q Consensus 80 v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd---------------------~d~ 138 (191)
+..++++.+.....+ +++++|+||++||++|+.+.|.+.++++++. +..+.+| .|.
T Consensus 5 l~~~~g~~~~~~~~~-~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (123)
T cd03011 5 ATTLDGEQFDLESLS-GKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVINDP 81 (123)
T ss_pred eecCCCCEeeHHHhC-CCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEEECC
Confidence 355666555544444 6999999999999999999999999987742 3233222 134
Q ss_pred CHHHHHHcCCCcccEEEEEECCeEEeeeeecCCCCHHHHHHH
Q 029575 139 NPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEY 180 (191)
Q Consensus 139 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~ 180 (191)
+.++++.|+|.++|+++++++++.. ..+.|..+.+.|.+.
T Consensus 82 ~~~~~~~~~i~~~P~~~vid~~gi~--~~~~g~~~~~~~~~~ 121 (123)
T cd03011 82 DGVISARWGVSVTPAIVIVDPGGIV--FVTTGVTSEWGLRLR 121 (123)
T ss_pred CcHHHHhCCCCcccEEEEEcCCCeE--EEEeccCCHHHHHhh
Confidence 5679999999999999999877743 689999999988764
No 82
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.57 E-value=3.2e-14 Score=103.05 Aligned_cols=102 Identities=27% Similarity=0.548 Sum_probs=72.9
Q ss_pred hhccCcccccccccCCCCCcEEcCCCChhhHHhcCCCcEEEEEEcC-CChhhhchHHHHHHHHHHhCC-CeEEEEEECCC
Q 029575 61 YNNSLPKLAIRVRCGASSGITEITESEFPNTVLKSERPVLVEFVAN-WCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHDA 138 (191)
Q Consensus 61 ~~~~~p~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~k~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~ 138 (191)
.|+.+|.+++.. ...+++.+...-. .+|+++|+||++ ||++|+..+|.+.++.+.|.+ ++.++.|..+.
T Consensus 2 ~G~~~P~~~~~~--------~~~~g~~~~l~~~-~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~ 72 (146)
T PF08534_consen 2 VGDKAPDFSLKD--------LDLDGKPVSLSDF-KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDD 72 (146)
T ss_dssp TTSB--CCEEEE--------EETTSEEEEGGGG-TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESS
T ss_pred CCCCCCCeEEEe--------ecCCCCEecHHHh-CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccC
Confidence 567788888422 1133333332222 289999999999 999999999999999998765 48888777543
Q ss_pred ---------------------CHHHHHHcCCC---------cccEEEEEE-CCeEEeeeeecCCCC
Q 029575 139 ---------------------NPQLIEEYKVY---------GLPTLILFK-NGQEVPESRREGAIT 173 (191)
Q Consensus 139 ---------------------~~~~~~~~~v~---------~~Pt~~~~~-~g~~~~~~~~~g~~~ 173 (191)
+..+.++|++. ++|++++++ +|+.+ ..+.|...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~--~~~~g~~~ 136 (146)
T PF08534_consen 73 DPPVREFLKKYGINFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVV--YRHVGPDP 136 (146)
T ss_dssp SHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEE--EEEESSBT
T ss_pred CHHHHHHHHhhCCCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEE--EEEeCCCC
Confidence 34688889988 999999998 55555 56777655
No 83
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.56 E-value=8.8e-14 Score=108.10 Aligned_cols=113 Identities=18% Similarity=0.291 Sum_probs=81.9
Q ss_pred hhccCcccccccccCCCCCcEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCC-CeEEEEEECCC-
Q 029575 61 YNNSLPKLAIRVRCGASSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHDA- 138 (191)
Q Consensus 61 ~~~~~p~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~- 138 (191)
.++.+|+|++. .++++.+...-.+ ++++||+||++||++|+..+|.|++++++|.+ ++.++.|+++.
T Consensus 75 ~g~~aPdF~l~----------d~~G~~vsLsd~k-GK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~ 143 (236)
T PLN02399 75 TEKSVHDFTVK----------DIDGKDVALSKFK-GKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQF 143 (236)
T ss_pred cCCCCCceEEE----------CCCCCEEeHHHhC-CCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccc
Confidence 45677888753 3444433322223 79999999999999999999999999999976 48999998641
Q ss_pred ------C----HHHH-HHcC----------------------------------CCcccEEEEEE-CCeEEeeeeecCCC
Q 029575 139 ------N----PQLI-EEYK----------------------------------VYGLPTLILFK-NGQEVPESRREGAI 172 (191)
Q Consensus 139 ------~----~~~~-~~~~----------------------------------v~~~Pt~~~~~-~g~~~~~~~~~g~~ 172 (191)
. .+++ ++++ |...|+.++++ +|+.+ .++.|..
T Consensus 144 ~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv--~~~~G~~ 221 (236)
T PLN02399 144 GGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVV--ERYPPTT 221 (236)
T ss_pred cccCCCCHHHHHHHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEE--EEECCCC
Confidence 1 1122 2221 22358999997 66666 6889999
Q ss_pred CHHHHHHHHHHHhh
Q 029575 173 TKLKLKEYIDTLLD 186 (191)
Q Consensus 173 ~~~~l~~~i~~~l~ 186 (191)
+.++|.+.|+++|+
T Consensus 222 ~~~~le~~I~~lL~ 235 (236)
T PLN02399 222 SPFQIEKDIQKLLA 235 (236)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999999885
No 84
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.56 E-value=3.8e-14 Score=130.71 Aligned_cols=89 Identities=27% Similarity=0.506 Sum_probs=76.7
Q ss_pred CCcEEEEEEcCCChhhhchHHHHHHHHHHhCCC-eEEEEEEC---------------------------CCCHHHHHHcC
Q 029575 96 ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDR-LTVVKIDH---------------------------DANPQLIEEYK 147 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~vd~---------------------------d~~~~~~~~~~ 147 (191)
+|++||+||++||++|+.+.|.|++++++|+++ +.++.|.. |.+..+.++|+
T Consensus 420 GK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~~ 499 (1057)
T PLN02919 420 GKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRELG 499 (1057)
T ss_pred CCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhcC
Confidence 899999999999999999999999999999764 88888742 22345778999
Q ss_pred CCcccEEEEEE-CCeEEeeeeecCCCCHHHHHHHHHHHhh
Q 029575 148 VYGLPTLILFK-NGQEVPESRREGAITKLKLKEYIDTLLD 186 (191)
Q Consensus 148 v~~~Pt~~~~~-~g~~~~~~~~~g~~~~~~l~~~i~~~l~ 186 (191)
|.++|++++|+ +|+.+ .+..|....+++.++|++++.
T Consensus 500 V~~iPt~ilid~~G~iv--~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 500 VSSWPTFAVVSPNGKLI--AQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred CCccceEEEECCCCeEE--EEEecccCHHHHHHHHHHHHH
Confidence 99999999996 77776 578899999999999998865
No 85
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.56 E-value=4.6e-14 Score=107.53 Aligned_cols=117 Identities=16% Similarity=0.278 Sum_probs=82.3
Q ss_pred hhhhccCcccccccccCCCCCcEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCC-CeEEEEEECC
Q 029575 59 KSYNNSLPKLAIRVRCGASSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHD 137 (191)
Q Consensus 59 ~~~~~~~p~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d 137 (191)
...+..+|+|++.. ++++.+...-.+ ++++||+||++||++|+..+|.|++++++|.+ ++.++.|+++
T Consensus 13 ~~~~~~~pdf~l~d----------~~G~~vsL~~~k-Gkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~ 81 (199)
T PTZ00056 13 DELRKSIYDYTVKT----------LEGTTVPMSSLK-NKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTS 81 (199)
T ss_pred hhcCCCCCceEEEC----------CCCCEEeHHHhC-CCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecch
Confidence 34456788888543 333333222223 79999999999999999999999999999976 4899999863
Q ss_pred -------CCH----HHHHHcCC------------------------------------Cccc---EEEEEE-CCeEEeee
Q 029575 138 -------ANP----QLIEEYKV------------------------------------YGLP---TLILFK-NGQEVPES 166 (191)
Q Consensus 138 -------~~~----~~~~~~~v------------------------------------~~~P---t~~~~~-~g~~~~~~ 166 (191)
+.. .+++++++ ..+| +.++++ +|+.+ .
T Consensus 82 ~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv--~ 159 (199)
T PTZ00056 82 QFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVV--A 159 (199)
T ss_pred hccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEE--E
Confidence 122 23333332 1122 577776 66666 5
Q ss_pred eecCCCCHHHHHHHHHHHhhhh
Q 029575 167 RREGAITKLKLKEYIDTLLDSI 188 (191)
Q Consensus 167 ~~~g~~~~~~l~~~i~~~l~~~ 188 (191)
++.|..+.+++.+.|++++++.
T Consensus 160 ~~~g~~~~~~l~~~I~~ll~~~ 181 (199)
T PTZ00056 160 YFSPRTEPLELEKKIAELLGVK 181 (199)
T ss_pred EeCCCCCHHHHHHHHHHHHHHH
Confidence 8889889999999999998753
No 86
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.55 E-value=6.9e-14 Score=104.09 Aligned_cols=85 Identities=26% Similarity=0.391 Sum_probs=69.2
Q ss_pred EEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCC-------------HHHHHHcCC--CcccEEEEEE-CCeEE
Q 029575 100 LVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDAN-------------PQLIEEYKV--YGLPTLILFK-NGQEV 163 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~-------------~~~~~~~~v--~~~Pt~~~~~-~g~~~ 163 (191)
+|+||++||++|+++.|.+++++++|+ +.++.|+.|.. ..+.+.|++ .++|+.++++ +|+..
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence 888999999999999999999999985 66766765532 236678885 6999999998 55553
Q ss_pred eeeeecCCCCHHHHHHHHHHHhhh
Q 029575 164 PESRREGAITKLKLKEYIDTLLDS 187 (191)
Q Consensus 164 ~~~~~~g~~~~~~l~~~i~~~l~~ 187 (191)
...+.|..+.+++.+.|+++++.
T Consensus 151 -~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 151 -LPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred -EEEEECCCCHHHHHHHHHHHHhh
Confidence 23689999999999999998763
No 87
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.55 E-value=4.2e-14 Score=91.44 Aligned_cols=73 Identities=22% Similarity=0.325 Sum_probs=59.7
Q ss_pred EEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEEeeeeecCC-CCHHHHH
Q 029575 100 LVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGA-ITKLKLK 178 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~-~~~~~l~ 178 (191)
.|.||++||++|+.+.|.+++++++++.++.|+.|| +.+.+.+|++.++|++++ +|+.+ ..|. .+.+++.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~----~~G~~~~~~~l~ 72 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV----IMGKIPSKEEIK 72 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE----EEeccCCHHHHH
Confidence 378999999999999999999999998888888887 344578899999999988 77665 4553 4557777
Q ss_pred HHH
Q 029575 179 EYI 181 (191)
Q Consensus 179 ~~i 181 (191)
+++
T Consensus 73 ~~l 75 (76)
T TIGR00412 73 EIL 75 (76)
T ss_pred HHh
Confidence 665
No 88
>PHA02125 thioredoxin-like protein
Probab=99.55 E-value=5.3e-14 Score=90.75 Aligned_cols=71 Identities=31% Similarity=0.578 Sum_probs=56.9
Q ss_pred EEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEEeeeeecCC-CCHHHHH
Q 029575 100 LVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGA-ITKLKLK 178 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~-~~~~~l~ 178 (191)
+++||++||++|+.+.|.|+++. +.++.||.+++.+++++|+|.++||++ +|+.+ .+..|. .+..+|.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~--~~~~G~~~~~~~l~ 70 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTL--DRFTGVPRNVAELK 70 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEE--EEEeCCCCcHHHHH
Confidence 78999999999999999997652 568999999999999999999999987 57766 366675 2335555
Q ss_pred HHH
Q 029575 179 EYI 181 (191)
Q Consensus 179 ~~i 181 (191)
+.|
T Consensus 71 ~~~ 73 (75)
T PHA02125 71 EKL 73 (75)
T ss_pred HHh
Confidence 443
No 89
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.55 E-value=4.3e-14 Score=99.59 Aligned_cols=95 Identities=12% Similarity=0.221 Sum_probs=68.1
Q ss_pred HHhcCCCcEEEEEEcCCChhhhchHHH-H--HHHHHHhCCCeEEEEEECCCCHHHHHH--------cCCCcccEEEEEE-
Q 029575 91 TVLKSERPVLVEFVANWCGPCRLVAPA-V--EWLAQEYGDRLTVVKIDHDANPQLIEE--------YKVYGLPTLILFK- 158 (191)
Q Consensus 91 ~~~~~~k~vlv~F~a~wC~~C~~~~p~-l--~~l~~~~~~~v~~~~vd~d~~~~~~~~--------~~v~~~Pt~~~~~- 158 (191)
...+.+|+++|+|+++||++|+.+... + .++.+.+.+++.++.+|.++.+++.+. |++.++|++++++
T Consensus 10 ~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~ 89 (124)
T cd02955 10 KARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTP 89 (124)
T ss_pred HHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECC
Confidence 344558999999999999999999874 3 467776666699999999988877653 5899999999997
Q ss_pred CCeEEeeeeecC---CCCHHHHHHHHHHHh
Q 029575 159 NGQEVPESRREG---AITKLKLKEYIDTLL 185 (191)
Q Consensus 159 ~g~~~~~~~~~g---~~~~~~l~~~i~~~l 185 (191)
+|+.+.+..+.. ..+...+..+++++.
T Consensus 90 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (124)
T cd02955 90 DLKPFFGGTYFPPEDRYGRPGFKTVLEKIR 119 (124)
T ss_pred CCCEEeeeeecCCCCcCCCcCHHHHHHHHH
Confidence 677763221111 123345666665543
No 90
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.55 E-value=4.9e-14 Score=100.32 Aligned_cols=68 Identities=31% Similarity=0.668 Sum_probs=57.2
Q ss_pred CCcEEEEEEcCCChhhhchHHHHHHHHHHhCC---CeEEEEEECCCC------------------------HHHHHHcCC
Q 029575 96 ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGD---RLTVVKIDHDAN------------------------PQLIEEYKV 148 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~------------------------~~~~~~~~v 148 (191)
+++++|+||++||++|+.+.|.+.++.+++.+ ++.++.|+.|.. ..+++.|+|
T Consensus 18 gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 97 (131)
T cd03009 18 GKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKI 97 (131)
T ss_pred CcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcCC
Confidence 78999999999999999999999999888753 477787777644 356788999
Q ss_pred CcccEEEEEE-CCeEE
Q 029575 149 YGLPTLILFK-NGQEV 163 (191)
Q Consensus 149 ~~~Pt~~~~~-~g~~~ 163 (191)
.++|++++|+ +|+.+
T Consensus 98 ~~~P~~~lid~~G~i~ 113 (131)
T cd03009 98 EGIPTLIILDADGEVV 113 (131)
T ss_pred CCCCEEEEECCCCCEE
Confidence 9999999998 56554
No 91
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.53 E-value=1.9e-13 Score=103.47 Aligned_cols=113 Identities=17% Similarity=0.279 Sum_probs=74.8
Q ss_pred hhhccCcccccccccCCCCCcEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEE----
Q 029575 60 SYNNSLPKLAIRVRCGASSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKID---- 135 (191)
Q Consensus 60 ~~~~~~p~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd---- 135 (191)
..++.+|+|++....|. ...+... ...+++++|+||++||++|+.+.|.+.++.+++..++.++..+
T Consensus 47 ~vG~~aP~f~l~d~~G~---~v~l~~~------~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~ 117 (189)
T TIGR02661 47 DVGDAAPIFNLPDFDGE---PVRIGGS------IAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAE 117 (189)
T ss_pred CCCCcCCCcEecCCCCC---EEeccch------hcCCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHH
Confidence 45677888886544442 1122111 1137899999999999999999999999988765444444321
Q ss_pred ---------C-----CCCHHHHHHcCCCcccEEEEEECCeEEeeeeecCC-CCHHHHHHHHHHH
Q 029575 136 ---------H-----DANPQLIEEYKVYGLPTLILFKNGQEVPESRREGA-ITKLKLKEYIDTL 184 (191)
Q Consensus 136 ---------~-----d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~-~~~~~l~~~i~~~ 184 (191)
. ....++.+.|++..+|+.++++..+++. +.|. ...+++.++++++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~lID~~G~I~---~~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 118 HRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGVLLDQDGKIR---AKGLTNTREHLESLLEAD 178 (189)
T ss_pred HHHHHHhcCCCcceeechhHHHHhccCCccceEEEECCCCeEE---EccCCCCHHHHHHHHHHH
Confidence 1 1134677899999999999998444442 2343 4667777777655
No 92
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.53 E-value=3.8e-14 Score=101.13 Aligned_cols=68 Identities=31% Similarity=0.659 Sum_probs=56.8
Q ss_pred CCcEEEEEEcCCChhhhchHHHHHHHHHHhCC---CeEEEEEECCCCH-------------------------HHHHHcC
Q 029575 96 ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGD---RLTVVKIDHDANP-------------------------QLIEEYK 147 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d~~~-------------------------~~~~~~~ 147 (191)
+|+++|+||++||++|+.++|.++++++++.+ ++.++.|+.|... .+.+.|+
T Consensus 17 Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 96 (132)
T cd02964 17 GKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFK 96 (132)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHcC
Confidence 79999999999999999999999999988865 4778888776532 4567799
Q ss_pred CCcccEEEEEE-CCeEE
Q 029575 148 VYGLPTLILFK-NGQEV 163 (191)
Q Consensus 148 v~~~Pt~~~~~-~g~~~ 163 (191)
|.++|++++++ +|+.+
T Consensus 97 v~~iPt~~lid~~G~iv 113 (132)
T cd02964 97 VEGIPTLVVLKPDGDVV 113 (132)
T ss_pred CCCCCEEEEECCCCCEE
Confidence 99999999998 45444
No 93
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.51 E-value=1.3e-13 Score=95.64 Aligned_cols=68 Identities=26% Similarity=0.461 Sum_probs=53.5
Q ss_pred CCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCC--------------------CHHHHHHcCCCcccEEE
Q 029575 96 ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDA--------------------NPQLIEEYKVYGLPTLI 155 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~--------------------~~~~~~~~~v~~~Pt~~ 155 (191)
+++++|+||++||++|+.+.|.++++++++.+++.++.+..+. +.++.+.|++.++|+++
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~~ 100 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYAV 100 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeEE
Confidence 7899999999999999999999999998887667666663111 12466778899999999
Q ss_pred EEECCeEE
Q 029575 156 LFKNGQEV 163 (191)
Q Consensus 156 ~~~~g~~~ 163 (191)
+++..+++
T Consensus 101 vid~~G~v 108 (114)
T cd02967 101 LLDEAGVI 108 (114)
T ss_pred EECCCCeE
Confidence 99844444
No 94
>PLN02412 probable glutathione peroxidase
Probab=99.49 E-value=4.2e-13 Score=99.59 Aligned_cols=90 Identities=20% Similarity=0.298 Sum_probs=71.0
Q ss_pred CCcEEEEEEcCCChhhhchHHHHHHHHHHhCC-CeEEEEEECCC-------C-HHH----HHHc----------------
Q 029575 96 ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHDA-------N-PQL----IEEY---------------- 146 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~-------~-~~~----~~~~---------------- 146 (191)
+|++||+||++||++|+...|.|+++.++|.+ ++.++.|+++. . .++ .+++
T Consensus 29 gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~~ 108 (167)
T PLN02412 29 GKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGKN 108 (167)
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCCC
Confidence 79999999999999999999999999999976 49999998642 1 121 1211
Q ss_pred -----C-------------CCcccEEEEEE-CCeEEeeeeecCCCCHHHHHHHHHHHhhh
Q 029575 147 -----K-------------VYGLPTLILFK-NGQEVPESRREGAITKLKLKEYIDTLLDS 187 (191)
Q Consensus 147 -----~-------------v~~~Pt~~~~~-~g~~~~~~~~~g~~~~~~l~~~i~~~l~~ 187 (191)
+ |.+.|+.++++ +|+.+ .++.|..+.+++.+.|+++|+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv--~~~~g~~~~~~l~~~i~~~l~~ 166 (167)
T PLN02412 109 TAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVV--QRYAPTTSPLKIEKDIQNLLGQ 166 (167)
T ss_pred CCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEE--EEECCCCCHHHHHHHHHHHHhh
Confidence 1 44468999997 56665 5889999999999999999864
No 95
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.48 E-value=1.5e-12 Score=92.01 Aligned_cols=105 Identities=15% Similarity=0.217 Sum_probs=88.9
Q ss_pred EEcCCCChhhHHhcCCCcEEEEEEcC--CChhhhchHHHHHHHHHHhCC-CeEEEEEECCCCHHHHHHcCCCcccEEEEE
Q 029575 81 TEITESEFPNTVLKSERPVLVEFVAN--WCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHDANPQLIEEYKVYGLPTLILF 157 (191)
Q Consensus 81 ~~l~~~~~~~~~~~~~k~vlv~F~a~--wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~ 157 (191)
..++..+++..+.. +...+|.|-.+ -++.+-...-.|++++++|++ ++.|++||+|++++++.+|+|.++||+++|
T Consensus 20 ~~~~~~~~~~~~~~-~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~F 98 (132)
T PRK11509 20 TPVSESRLDDWLTQ-APDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVF 98 (132)
T ss_pred CccccccHHHHHhC-CCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEE
Confidence 45555677766644 45556555543 588889999999999999984 599999999999999999999999999999
Q ss_pred ECCeEEeeeeecCCCCHHHHHHHHHHHhhhh
Q 029575 158 KNGQEVPESRREGAITKLKLKEYIDTLLDSI 188 (191)
Q Consensus 158 ~~g~~~~~~~~~g~~~~~~l~~~i~~~l~~~ 188 (191)
++|+.+ ....|..+.+++.++|++++...
T Consensus 99 kdGk~v--~~i~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 99 TGGNYR--GVLNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred ECCEEE--EEEeCcCCHHHHHHHHHHHhcCc
Confidence 999999 58899999999999999998754
No 96
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=3.8e-13 Score=112.21 Aligned_cols=140 Identities=28% Similarity=0.402 Sum_probs=112.0
Q ss_pred cccccccCCCCchhhhhhhccCcccccccccCCCCCcEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHH
Q 029575 44 SKNQLLFGSRTNLSLKSYNNSLPKLAIRVRCGASSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQ 123 (191)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~ 123 (191)
..+..|.|.++...+..+....-...... .....+.+++..+|...+...+..++|.||++||++|+.+.|.|++++.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~ 189 (383)
T KOG0191|consen 112 KKPIDYSGPRNAESLAEFLIKELEPSVKK--LVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAK 189 (383)
T ss_pred CceeeccCcccHHHHHHHHHHhhcccccc--ccCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHH
Confidence 45666777777666655544211111111 1111489999999998888888999999999999999999999999999
Q ss_pred HhC--CCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeE-EeeeeecCCCCHHHHHHHHHHHhhh
Q 029575 124 EYG--DRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQE-VPESRREGAITKLKLKEYIDTLLDS 187 (191)
Q Consensus 124 ~~~--~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~-~~~~~~~g~~~~~~l~~~i~~~l~~ 187 (191)
.+. ..+.++.+|++.+..++++++|.++||+++|.+|.. . ..+.|.++.+.+..|+.+..+.
T Consensus 190 ~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~--~~~~~~R~~~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 190 LLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEEDI--YYYSGLRDSDSIVSFVEKKERR 254 (383)
T ss_pred HhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCccc--ccccccccHHHHHHHHHhhcCC
Confidence 885 469999999998899999999999999999998888 4 5889999999999999987654
No 97
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.46 E-value=4.5e-13 Score=84.31 Aligned_cols=62 Identities=26% Similarity=0.427 Sum_probs=54.3
Q ss_pred EEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEE
Q 029575 99 VLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEV 163 (191)
Q Consensus 99 vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~ 163 (191)
-++.||++||++|+.+.+.+++++..++ ++.+..+|.+++++++++|++.++|++++ +|+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~-~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~~ 63 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP-NISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKVE 63 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC-ceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEEE
Confidence 4788999999999999999999987654 49999999999999999999999999865 55443
No 98
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.46 E-value=1.4e-12 Score=97.08 Aligned_cols=95 Identities=25% Similarity=0.476 Sum_probs=73.8
Q ss_pred CCCcEEEEEEcCCChhhhchHHHHHHHHHHhCC-CeEEEEEECCC-----------------------------CHHHHH
Q 029575 95 SERPVLVEFVANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHDA-----------------------------NPQLIE 144 (191)
Q Consensus 95 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~-----------------------------~~~~~~ 144 (191)
.++++||+||++||+.|....+.+.++.+++.+ ++.|+.|+.|. +..+.+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 479999999999999999999999999999974 69999998753 123567
Q ss_pred HcCCCcccEEEEEE-CCeEEeeeee-------cCCCCHHHHHHHHHHHhhhhc
Q 029575 145 EYKVYGLPTLILFK-NGQEVPESRR-------EGAITKLKLKEYIDTLLDSIS 189 (191)
Q Consensus 145 ~~~v~~~Pt~~~~~-~g~~~~~~~~-------~g~~~~~~l~~~i~~~l~~~~ 189 (191)
.|++..+|++++++ +|+.+..... .+..+.+++.+.|++++...+
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 156 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKP 156 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCC
Confidence 88999999999998 5554421110 133567889999999987654
No 99
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.46 E-value=7.2e-13 Score=90.81 Aligned_cols=81 Identities=38% Similarity=0.676 Sum_probs=66.1
Q ss_pred EcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhC-CCeEEEEEECCCC---------------------
Q 029575 82 EITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYG-DRLTVVKIDHDAN--------------------- 139 (191)
Q Consensus 82 ~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~--------------------- 139 (191)
.++++.+...-.. +++++|+||++||++|+...+.+.++.++++ .++.++.|+++..
T Consensus 6 ~~~g~~~~~~~~~-~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~ 84 (116)
T cd02966 6 DLDGKPVSLSDLK-GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLD 84 (116)
T ss_pred CCCCCEeehHHcC-CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEc
Confidence 3444444433333 7899999999999999999999999999996 3599999999885
Q ss_pred --HHHHHHcCCCcccEEEEEE-CCeEE
Q 029575 140 --PQLIEEYKVYGLPTLILFK-NGQEV 163 (191)
Q Consensus 140 --~~~~~~~~v~~~Pt~~~~~-~g~~~ 163 (191)
..+.+.|++.++|++++++ +|+.+
T Consensus 85 ~~~~~~~~~~~~~~P~~~l~d~~g~v~ 111 (116)
T cd02966 85 PDGELAKAYGVRGLPTTFLIDRDGRIR 111 (116)
T ss_pred CcchHHHhcCcCccceEEEECCCCcEE
Confidence 6789999999999999997 55555
No 100
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.44 E-value=1.1e-12 Score=87.21 Aligned_cols=76 Identities=21% Similarity=0.262 Sum_probs=65.2
Q ss_pred CCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEEeeeeecCCCCHH
Q 029575 96 ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKL 175 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~ 175 (191)
+++.+..|+++||++|....+.++++++.+++ +.+..+|.++.++++.+|+|.++|++++ +|+.+ +.|..+.+
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~-i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~----~~G~~~~~ 84 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNPN-IEHEMIDGALFQDEVEERGIMSVPAIFL--NGELF----GFGRMTLE 84 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCCC-ceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEE----EeCCCCHH
Confidence 56779999999999999999999999988864 9999999999999999999999999965 77766 35766666
Q ss_pred HHH
Q 029575 176 KLK 178 (191)
Q Consensus 176 ~l~ 178 (191)
++.
T Consensus 85 e~~ 87 (89)
T cd03026 85 EIL 87 (89)
T ss_pred HHh
Confidence 543
No 101
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.43 E-value=1.1e-12 Score=98.06 Aligned_cols=93 Identities=13% Similarity=0.243 Sum_probs=67.9
Q ss_pred ChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEE------EEEECCC----------------------
Q 029575 87 EFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTV------VKIDHDA---------------------- 138 (191)
Q Consensus 87 ~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~------~~vd~d~---------------------- 138 (191)
.+....+. +|+.+|+|||+||++|+..+|.+.++.++ ++.+ +.||.|+
T Consensus 51 ~~~~~~l~-GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~ 126 (184)
T TIGR01626 51 PWGSAELA-GKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPW 126 (184)
T ss_pred eccHHHcC-CCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCc
Confidence 33333334 89999999999999999999999999653 1333 5555443
Q ss_pred -------CHHHHHHcCCCcccEE-EEEE-CCeEEeeeeecCCCCHHHHHHHHHHHhh
Q 029575 139 -------NPQLIEEYKVYGLPTL-ILFK-NGQEVPESRREGAITKLKLKEYIDTLLD 186 (191)
Q Consensus 139 -------~~~~~~~~~v~~~Pt~-~~~~-~g~~~~~~~~~g~~~~~~l~~~i~~~l~ 186 (191)
...+...|++.++|+. ++++ +|+.+ ..+.|..+.+++.+ +..+++
T Consensus 127 ~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv--~~~~G~l~~ee~e~-~~~li~ 180 (184)
T TIGR01626 127 SQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVK--FVKEGALSDSDIQT-VISLVN 180 (184)
T ss_pred ceEEECCcchHHHhcCCCCCCceEEEECCCCcEE--EEEeCCCCHHHHHH-HHHHHH
Confidence 2245678899999888 7887 55555 68999999998877 444443
No 102
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.42 E-value=2.9e-12 Score=89.16 Aligned_cols=93 Identities=16% Similarity=0.214 Sum_probs=77.1
Q ss_pred HhcCCCcEEEEEEcCCChhhhchHHHH---HHHHHHhCCCeEEEEEECC--CCHHHHHHcCCCcccEEEEEEC--CeEEe
Q 029575 92 VLKSERPVLVEFVANWCGPCRLVAPAV---EWLAQEYGDRLTVVKIDHD--ANPQLIEEYKVYGLPTLILFKN--GQEVP 164 (191)
Q Consensus 92 ~~~~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d--~~~~~~~~~~v~~~Pt~~~~~~--g~~~~ 164 (191)
..+.+|+++|+|+++||++|+.+.... .++.+.+.++..++.+|.+ +...++..|++.++|++++++. |+.+
T Consensus 13 Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l- 91 (114)
T cd02958 13 AKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVL- 91 (114)
T ss_pred HHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEe-
Confidence 344589999999999999999998643 5566666666888888887 4567899999999999999974 6666
Q ss_pred eeeecCCCCHHHHHHHHHHHhh
Q 029575 165 ESRREGAITKLKLKEYIDTLLD 186 (191)
Q Consensus 165 ~~~~~g~~~~~~l~~~i~~~l~ 186 (191)
.+..|..++++|.+.|++++.
T Consensus 92 -~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 92 -KVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred -EEEcCCCCHHHHHHHHHHHHh
Confidence 589999999999999998765
No 103
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.41 E-value=1.5e-12 Score=92.07 Aligned_cols=75 Identities=24% Similarity=0.334 Sum_probs=60.4
Q ss_pred CCCcEEEEEEcCCChhhhchHHHHHHHHHHhCC-CeEEEEEECC---------------------------CCHHHHHHc
Q 029575 95 SERPVLVEFVANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHD---------------------------ANPQLIEEY 146 (191)
Q Consensus 95 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d---------------------------~~~~~~~~~ 146 (191)
.+++++|+||++||++|+...|.|+++++++++ ++.++.|+.+ ....+.+.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 379999999999999999999999999999975 5888887541 123467789
Q ss_pred CCCcccEEEEEE-CCeEEeeeeecCC
Q 029575 147 KVYGLPTLILFK-NGQEVPESRREGA 171 (191)
Q Consensus 147 ~v~~~Pt~~~~~-~g~~~~~~~~~g~ 171 (191)
++.++|++++++ +|+.+ ..+.|.
T Consensus 102 ~v~~~P~~~vid~~G~v~--~~~~G~ 125 (126)
T cd03012 102 GNQYWPALYLIDPTGNVR--HVHFGE 125 (126)
T ss_pred CCCcCCeEEEECCCCcEE--EEEecC
Confidence 999999999997 56555 455553
No 104
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.37 E-value=5.6e-13 Score=112.39 Aligned_cols=109 Identities=28% Similarity=0.509 Sum_probs=87.5
Q ss_pred CCcEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCC---CeEEEEEECC--CCHHHHHHcCCCccc
Q 029575 78 SGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGD---RLTVVKIDHD--ANPQLIEEYKVYGLP 152 (191)
Q Consensus 78 ~~v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd~d--~~~~~~~~~~v~~~P 152 (191)
+.|.+|+.++|...+....+..+|.||++|||+|+.+.|.|+++++...+ -+.+..|||- +|..+|++|+|.++|
T Consensus 39 D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~P 118 (606)
T KOG1731|consen 39 DPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYP 118 (606)
T ss_pred CCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCc
Confidence 44899999999999998788999999999999999999999999998754 3888899985 577899999999999
Q ss_pred EEEEEECCeEE--eeeeecCCCCHHHHHHHHHHHhh
Q 029575 153 TLILFKNGQEV--PESRREGAITKLKLKEYIDTLLD 186 (191)
Q Consensus 153 t~~~~~~g~~~--~~~~~~g~~~~~~l~~~i~~~l~ 186 (191)
++.+|..+-.- .+....|.....++.+.+.+.+.
T Consensus 119 tlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la 154 (606)
T KOG1731|consen 119 TLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLA 154 (606)
T ss_pred eeeecCCccccCcCCCcccCCcchhhHHHHHHHHHH
Confidence 99999744211 01234555566777777766554
No 105
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.37 E-value=4.7e-12 Score=92.48 Aligned_cols=82 Identities=24% Similarity=0.317 Sum_probs=61.6
Q ss_pred CCcEEEEEEcCCChhhhchHHHHHHHHHHhCC-CeEEEEEECCC-------CH----HHHHH-cC---------------
Q 029575 96 ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHDA-------NP----QLIEE-YK--------------- 147 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~-------~~----~~~~~-~~--------------- 147 (191)
+|+++|+||++||+ |+..+|.|++++++|.+ ++.++.|+++. .. +++++ ++
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~~~ 100 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGEN 100 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccCCC
Confidence 79999999999999 99999999999999975 58999997642 11 23322 21
Q ss_pred --------CCccc-----------EEEEEE-CCeEEeeeeecCCCCHHHHHHH
Q 029575 148 --------VYGLP-----------TLILFK-NGQEVPESRREGAITKLKLKEY 180 (191)
Q Consensus 148 --------v~~~P-----------t~~~~~-~g~~~~~~~~~g~~~~~~l~~~ 180 (191)
+..+| +.++++ +|+.+ .++.|..+.+++.+.
T Consensus 101 ~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~--~~~~G~~~~~~l~~~ 151 (152)
T cd00340 101 AHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVV--KRFAPTTDPEELEKD 151 (152)
T ss_pred CChHHHHHHhcCCCCCCCccccccEEEEECCCCcEE--EEECCCCCHHHHHhc
Confidence 23456 678886 66666 689999888877654
No 106
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.34 E-value=2e-11 Score=89.26 Aligned_cols=88 Identities=22% Similarity=0.233 Sum_probs=67.0
Q ss_pred CCcEEEEEEcCCChhhhchHHHHHHHHHHhCC-CeEEEEEECC--------CC---HHHHHH-cC---------------
Q 029575 96 ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHD--------AN---PQLIEE-YK--------------- 147 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d--------~~---~~~~~~-~~--------------- 147 (191)
+|++||+||++||++|+..+|.++++.++|++ ++.++.|+++ .. .+.+++ ++
T Consensus 22 Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~~ 101 (153)
T TIGR02540 22 GKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGSE 101 (153)
T ss_pred CCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCCC
Confidence 78899999999999999999999999999976 5899999852 11 122221 21
Q ss_pred -----------CCcccE----EEEEE-CCeEEeeeeecCCCCHHHHHHHHHHHh
Q 029575 148 -----------VYGLPT----LILFK-NGQEVPESRREGAITKLKLKEYIDTLL 185 (191)
Q Consensus 148 -----------v~~~Pt----~~~~~-~g~~~~~~~~~g~~~~~~l~~~i~~~l 185 (191)
...+|+ .++++ +|+.+ ..+.|..+.++|.+.|++++
T Consensus 102 ~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~--~~~~g~~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 102 AEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVV--KFWRPEEPVEEIRPEITALV 153 (153)
T ss_pred CCcHHHHHHhcCCCCCCCccEEEEEcCCCcEE--EEECCCCCHHHHHHHHHHhC
Confidence 114786 77776 56665 68899999999999888764
No 107
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.33 E-value=9e-12 Score=87.39 Aligned_cols=92 Identities=22% Similarity=0.511 Sum_probs=71.9
Q ss_pred hhccCcccccccccCCCCCcEEcCCCChhhHHhcCCCcEEEEEEcC-CChhhhchHHHHHHHHHHhCC-CeEEEEEECCC
Q 029575 61 YNNSLPKLAIRVRCGASSGITEITESEFPNTVLKSERPVLVEFVAN-WCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHDA 138 (191)
Q Consensus 61 ~~~~~p~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~k~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~ 138 (191)
.|+.+|+|.+....+ ..++.+++ .+++++|.||+. ||++|+...+.|.++.+++++ ++.++.|+.|.
T Consensus 1 vG~~~P~f~l~~~~g-----~~~~l~~l------~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~ 69 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDG-----KTVSLSDL------KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDD 69 (124)
T ss_dssp TTSBGGCEEEETTTS-----EEEEGGGG------TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSS
T ss_pred CcCCCCCcEeECCCC-----CEEEHHHH------CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeeccccc
Confidence 367889988654443 23333333 279999999999 999999999999999999875 59999998654
Q ss_pred ---------------------CHHHHHHcCCC------cccEEEEEECCeEE
Q 029575 139 ---------------------NPQLIEEYKVY------GLPTLILFKNGQEV 163 (191)
Q Consensus 139 ---------------------~~~~~~~~~v~------~~Pt~~~~~~g~~~ 163 (191)
+..+.+.|++. .+|++++++.++.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I 121 (124)
T PF00578_consen 70 PEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKI 121 (124)
T ss_dssp HHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBE
T ss_pred ccchhhhhhhhccccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEE
Confidence 33578889998 99999999966665
No 108
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.32 E-value=1.4e-11 Score=92.71 Aligned_cols=112 Identities=17% Similarity=0.224 Sum_probs=76.0
Q ss_pred hccCcccccccccCCCCCcEEcCCCChhhHHhcCCCcE-EEEEEcCCChhhhchHHHHHHHHHHhCC-CeEEEEEECCC-
Q 029575 62 NNSLPKLAIRVRCGASSGITEITESEFPNTVLKSERPV-LVEFVANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHDA- 138 (191)
Q Consensus 62 ~~~~p~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~k~v-lv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~- 138 (191)
...+|+|++. .++++.+...-.. +|++ ++.+|++||++|+..+|.|+++.++|.+ ++.++.|+++.
T Consensus 17 ~~~~p~f~l~----------d~~G~~vsLs~~~-Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~ 85 (183)
T PTZ00256 17 TKSFFEFEAI----------DIDGQLVQLSKFK-GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQF 85 (183)
T ss_pred CCcccceEeE----------cCCCCEEeHHHhC-CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccc
Confidence 3467777743 3333333322223 6654 5566999999999999999999999976 48999997641
Q ss_pred ------C-HH---H-HHH------------------------------------cCCCcccE---EEEEE-CCeEEeeee
Q 029575 139 ------N-PQ---L-IEE------------------------------------YKVYGLPT---LILFK-NGQEVPESR 167 (191)
Q Consensus 139 ------~-~~---~-~~~------------------------------------~~v~~~Pt---~~~~~-~g~~~~~~~ 167 (191)
+ .+ . .++ +++.++|+ .++++ +|+.+ .+
T Consensus 86 ~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv--~~ 163 (183)
T PTZ00256 86 MEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVV--KY 163 (183)
T ss_pred cccCCCCHHHHHHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEE--EE
Confidence 0 11 1 111 13446794 47776 66666 58
Q ss_pred ecCCCCHHHHHHHHHHHhh
Q 029575 168 REGAITKLKLKEYIDTLLD 186 (191)
Q Consensus 168 ~~g~~~~~~l~~~i~~~l~ 186 (191)
+.|..+.+++.+.|+++++
T Consensus 164 ~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 164 FSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred ECCCCCHHHHHHHHHHHhc
Confidence 8899999999999998875
No 109
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.29 E-value=2.2e-11 Score=90.32 Aligned_cols=93 Identities=14% Similarity=0.233 Sum_probs=68.6
Q ss_pred hhhhccCcccccccccCCCCCcEEcCCCChhhHHhcCCCcEEEEEEcCC-ChhhhchHHHHHHHHHHhCCCeEEEEEECC
Q 029575 59 KSYNNSLPKLAIRVRCGASSGITEITESEFPNTVLKSERPVLVEFVANW-CGPCRLVAPAVEWLAQEYGDRLTVVKIDHD 137 (191)
Q Consensus 59 ~~~~~~~p~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~k~vlv~F~a~w-C~~C~~~~p~l~~l~~~~~~~v~~~~vd~d 137 (191)
.+.++.+|+|.+....+. .++..++ .+|.++|+||+.| |++|+...+.|+++++++. ++.++.|+.|
T Consensus 18 ~~~G~~~P~f~l~~~~g~-----~v~l~~~------~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D 85 (167)
T PRK00522 18 PQVGDKAPDFTLVANDLS-----DVSLADF------AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISAD 85 (167)
T ss_pred CCCCCCCCCeEEEcCCCc-----EEehHHh------CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCC
Confidence 346778899886543332 2222223 2789999999999 9999999999999999985 5888888754
Q ss_pred C-----------------------CHHHHHHcCCCccc---------EEEEEE-CCeEE
Q 029575 138 A-----------------------NPQLIEEYKVYGLP---------TLILFK-NGQEV 163 (191)
Q Consensus 138 ~-----------------------~~~~~~~~~v~~~P---------t~~~~~-~g~~~ 163 (191)
. ...+++.|++...| +.++++ +|+.+
T Consensus 86 ~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~ 144 (167)
T PRK00522 86 LPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVV 144 (167)
T ss_pred CHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEE
Confidence 2 22678889998777 888997 55555
No 110
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.26 E-value=5e-11 Score=85.43 Aligned_cols=84 Identities=21% Similarity=0.305 Sum_probs=66.8
Q ss_pred CCcEEEEEE-cCCChhhhchHHHHHHHHHHhCC-CeEEEEEECCC---------------------CHHHHHHcCCCcc-
Q 029575 96 ERPVLVEFV-ANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHDA---------------------NPQLIEEYKVYGL- 151 (191)
Q Consensus 96 ~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~---------------------~~~~~~~~~v~~~- 151 (191)
+++++|+|| +.||+.|....+.+.++.+++.+ ++.++.|..|. +..+.+.|++...
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~ 102 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEK 102 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccc
Confidence 789999999 58999999999999999998864 48888886543 3357778899888
Q ss_pred --------cEEEEEE-CCeEEeeeeecCCCCHHHHHHHH
Q 029575 152 --------PTLILFK-NGQEVPESRREGAITKLKLKEYI 181 (191)
Q Consensus 152 --------Pt~~~~~-~g~~~~~~~~~g~~~~~~l~~~i 181 (191)
|++++++ +|+.+ ..+.|....+.+.+.+
T Consensus 103 ~~~~~~~~p~~~lid~~G~v~--~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 103 KKKYMGIERSTFLIDPDGKIV--KVWRKVKPKGHAEEVL 139 (140)
T ss_pred ccccCCcceeEEEECCCCEEE--EEEecCCccchHHHHh
Confidence 9999998 46555 5788887777666654
No 111
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.25 E-value=1.5e-11 Score=86.85 Aligned_cols=90 Identities=13% Similarity=0.145 Sum_probs=58.0
Q ss_pred cEEc-CCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHH---HHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEE
Q 029575 80 ITEI-TESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAV---EWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLI 155 (191)
Q Consensus 80 v~~l-~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~ 155 (191)
|... +-++-.....+.+|+++|+|+++||++|+.+...+ .++.+...+++..+.++.|....-....+ .++||++
T Consensus 6 i~W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtiv 84 (130)
T cd02960 6 IIWVQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIM 84 (130)
T ss_pred ccchhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEE
Confidence 4444 33444445556699999999999999999999875 44555554456666777652211111233 6899999
Q ss_pred EEE-CCeEEeeeeecCCC
Q 029575 156 LFK-NGQEVPESRREGAI 172 (191)
Q Consensus 156 ~~~-~g~~~~~~~~~g~~ 172 (191)
|++ +|+.+ .+..|..
T Consensus 85 Fld~~g~vi--~~i~Gy~ 100 (130)
T cd02960 85 FVDPSLTVR--ADITGRY 100 (130)
T ss_pred EECCCCCCc--ccccccc
Confidence 997 55554 3455543
No 112
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.24 E-value=7.3e-11 Score=85.09 Aligned_cols=107 Identities=11% Similarity=0.163 Sum_probs=72.7
Q ss_pred hhccCcccccccccCCCCCcEEcCCCChhhHHhcCCCcEEEEEEcCC-ChhhhchHHHHHHHHHHhCCCeEEEEEECCC-
Q 029575 61 YNNSLPKLAIRVRCGASSGITEITESEFPNTVLKSERPVLVEFVANW-CGPCRLVAPAVEWLAQEYGDRLTVVKIDHDA- 138 (191)
Q Consensus 61 ~~~~~p~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~k~vlv~F~a~w-C~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~- 138 (191)
.+..+|+|.+....+. .++..++ .+|++||+||+.| |++|+..++.|.++.+++. ++.++.|+.|.
T Consensus 2 ~G~~aP~f~l~~~~g~-----~~~l~~~------~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~ 69 (143)
T cd03014 2 VGDKAPDFTLVTSDLS-----EVSLADF------AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLP 69 (143)
T ss_pred CCCCCCCcEEECCCCc-----EEeHHHh------CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCH
Confidence 3567888885443332 2222222 2789999999998 6999999999999999986 58888888652
Q ss_pred ---------------------C-HHHHHHcCCCc------ccEEEEEE-CCeEEeeeeecCC--CCHHHHHHHH
Q 029575 139 ---------------------N-PQLIEEYKVYG------LPTLILFK-NGQEVPESRREGA--ITKLKLKEYI 181 (191)
Q Consensus 139 ---------------------~-~~~~~~~~v~~------~Pt~~~~~-~g~~~~~~~~~g~--~~~~~l~~~i 181 (191)
. ..+++.|++.. .|+.++++ +|+.+ ..+.|. ....++.+.|
T Consensus 70 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~--~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 70 FAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVI--YVELVPEITDEPDYEAAL 141 (143)
T ss_pred HHHHHHHHhcCCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEE--EEEECCCcccCCCHHHHh
Confidence 1 35667788753 68999997 56655 344443 3444555444
No 113
>smart00594 UAS UAS domain.
Probab=99.22 E-value=1.3e-10 Score=81.78 Aligned_cols=95 Identities=14% Similarity=0.189 Sum_probs=72.8
Q ss_pred CChhhHHhcCCCcEEEEEEcCCChhhhchHHHH---HHHHHHhCCCeEEEEEECCC--CHHHHHHcCCCcccEEEEEE-C
Q 029575 86 SEFPNTVLKSERPVLVEFVANWCGPCRLVAPAV---EWLAQEYGDRLTVVKIDHDA--NPQLIEEYKVYGLPTLILFK-N 159 (191)
Q Consensus 86 ~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~--~~~~~~~~~v~~~Pt~~~~~-~ 159 (191)
++......+.+|.++|+|+++||++|+.+.... .++.+.+.+++.++.+|++. ...++..|++.++|++++++ +
T Consensus 17 ~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~ 96 (122)
T smart00594 17 EAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPR 96 (122)
T ss_pred HHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecC
Confidence 333344445689999999999999999998764 55666666568888888764 45789999999999999997 4
Q ss_pred C-eE---EeeeeecCCCCHHHHHHHH
Q 029575 160 G-QE---VPESRREGAITKLKLKEYI 181 (191)
Q Consensus 160 g-~~---~~~~~~~g~~~~~~l~~~i 181 (191)
| .. +. .+..|..+.++|..+|
T Consensus 97 ~g~~~~~~~-~~~~G~~~~~~l~~~l 121 (122)
T smart00594 97 TGQRVIEWV-GVVEGEISPEELMTFL 121 (122)
T ss_pred CCceeEEEe-ccccCCCCHHHHHHhh
Confidence 3 11 22 4789999999988876
No 114
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.22 E-value=1.5e-10 Score=87.41 Aligned_cols=114 Identities=13% Similarity=0.140 Sum_probs=75.6
Q ss_pred hhccCcccccccc-cCCCCCcEEcCCCChhhHHhcCCCcEEEEEE-cCCChhhhchHHHHHHHHHHhCC-CeEEEEEECC
Q 029575 61 YNNSLPKLAIRVR-CGASSGITEITESEFPNTVLKSERPVLVEFV-ANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHD 137 (191)
Q Consensus 61 ~~~~~p~~~~~~~-~~~~~~v~~l~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d 137 (191)
.++.+|+|++... .+. ...++..++. ++++||+|| +.||++|....+.|.++.+++.+ ++.++.|+.|
T Consensus 4 ~G~~aP~f~l~~~~~g~---~~~~sl~d~~------Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D 74 (187)
T TIGR03137 4 INTEIKPFKATAYHNGE---FVEVTDEDVK------GKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTD 74 (187)
T ss_pred cCCcCCCcEeeeccCCc---eeEecHHHHC------CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 4567888885431 121 1233333332 789999999 99999999999999999998854 5777777755
Q ss_pred C-------------------------CHHHHHHcCCC------cccEEEEEE-CCeEEeeeeecC--CCCHHHHHHHHHH
Q 029575 138 A-------------------------NPQLIEEYKVY------GLPTLILFK-NGQEVPESRREG--AITKLKLKEYIDT 183 (191)
Q Consensus 138 ~-------------------------~~~~~~~~~v~------~~Pt~~~~~-~g~~~~~~~~~g--~~~~~~l~~~i~~ 183 (191)
. +..+++.|++. ..|+.++++ +|+......... ....+++.+.|++
T Consensus 75 ~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 75 THFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred CHHHHHHHHhhhhhccCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 3 23567788886 469999997 565553221111 2366677666644
No 115
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.21 E-value=2e-10 Score=83.15 Aligned_cols=110 Identities=14% Similarity=0.192 Sum_probs=72.3
Q ss_pred hhccCcccccccccCCCCCcEEcCCCChhhHHhcCCCcEEEEEE-cCCChhhhchHHHHHHHHHHhCC-CeEEEEEECC-
Q 029575 61 YNNSLPKLAIRVRCGASSGITEITESEFPNTVLKSERPVLVEFV-ANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHD- 137 (191)
Q Consensus 61 ~~~~~p~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d- 137 (191)
.+..+|.+.+.. ++++.+...-..+++.++|.|| ++||+.|....+.++++.+++.+ ++.++.|+.+
T Consensus 3 ~G~~~p~~~l~~----------~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~ 72 (149)
T cd03018 3 VGDKAPDFELPD----------QNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDS 72 (149)
T ss_pred CCCcCCCcEecC----------CCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCC
Confidence 456777777533 3333332222232378888887 99999999999999999999864 5888887643
Q ss_pred --------------------CC--HHHHHHcCCCc----c--cEEEEEE-CCeEEeeeeecCC----CCHHHHHHHHH
Q 029575 138 --------------------AN--PQLIEEYKVYG----L--PTLILFK-NGQEVPESRREGA----ITKLKLKEYID 182 (191)
Q Consensus 138 --------------------~~--~~~~~~~~v~~----~--Pt~~~~~-~g~~~~~~~~~g~----~~~~~l~~~i~ 182 (191)
.. ..+.+.|++.. + |++++++ +|+.+ ..+.|. .+..++.+.|+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~--~~~~~~~~~~~~~~~~~~~~~ 148 (149)
T cd03018 73 PFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIR--YAWVSDDGEPRDLPDYDEALD 148 (149)
T ss_pred HHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEE--EEEecCCcccccchhHHHHhh
Confidence 23 45777888873 3 3888887 56655 455554 34455555543
No 116
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.21 E-value=2.3e-10 Score=85.34 Aligned_cols=113 Identities=16% Similarity=0.208 Sum_probs=75.5
Q ss_pred hccCcccccccccC-CCCCcEEcCCCChhhHHhcCCCcEEEEEE-cCCChhhhchHHHHHHHHHHhCC-CeEEEEEECCC
Q 029575 62 NNSLPKLAIRVRCG-ASSGITEITESEFPNTVLKSERPVLVEFV-ANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHDA 138 (191)
Q Consensus 62 ~~~~p~~~~~~~~~-~~~~v~~l~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~ 138 (191)
|+.+|.|.+....+ .. ...++..++ . ++++||+|| +.||++|....+.|.++++++.+ ++.++.|+.|.
T Consensus 2 G~~aP~f~~~~~~g~~~--~~~~~l~~~-----~-Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~ 73 (173)
T cd03015 2 GKKAPDFKATAVVPNGE--FKEISLSDY-----K-GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDS 73 (173)
T ss_pred CCcCCCCEeecccCCCC--ceEEehHHh-----C-CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 45678887543333 11 112222222 2 789999999 89999999999999999999864 47777776543
Q ss_pred ----------------------------CHHHHHHcCCC------cccEEEEEE-CCeEEeeeeecCC----CCHHHHHH
Q 029575 139 ----------------------------NPQLIEEYKVY------GLPTLILFK-NGQEVPESRREGA----ITKLKLKE 179 (191)
Q Consensus 139 ----------------------------~~~~~~~~~v~------~~Pt~~~~~-~g~~~~~~~~~g~----~~~~~l~~ 179 (191)
...+++.|++. ..|++++++ +|+.+ ..+.+. .+.+++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~--~~~~~~~~~~~~~~~il~ 151 (173)
T cd03015 74 HFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIR--HITVNDLPVGRSVDETLR 151 (173)
T ss_pred HHHHHHHHHhhhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEE--EEEecCCCCCCCHHHHHH
Confidence 22456677876 578999998 55555 344332 35667777
Q ss_pred HHHHH
Q 029575 180 YIDTL 184 (191)
Q Consensus 180 ~i~~~ 184 (191)
.|+.+
T Consensus 152 ~l~~~ 156 (173)
T cd03015 152 VLDAL 156 (173)
T ss_pred HHHHh
Confidence 77665
No 117
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.20 E-value=2.7e-10 Score=83.23 Aligned_cols=110 Identities=19% Similarity=0.218 Sum_probs=75.3
Q ss_pred hhhccCcccccccccCCCCCcEEcCCCChhhHHhcCCCcEEEEEEcC-CChhhhchHHHHHHHHHHhCC-CeEEEEEECC
Q 029575 60 SYNNSLPKLAIRVRCGASSGITEITESEFPNTVLKSERPVLVEFVAN-WCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHD 137 (191)
Q Consensus 60 ~~~~~~p~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~k~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d 137 (191)
+.++.+|+|++.. ++++.+...-.+ +++++|+||+. ||+.|....+.+.++.+++.+ ++.++.|+.|
T Consensus 5 ~~g~~~p~f~l~~----------~~G~~~~l~~~~-gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d 73 (154)
T PRK09437 5 KAGDIAPKFSLPD----------QDGEQVSLTDFQ-GQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTD 73 (154)
T ss_pred CCCCcCCCcEeeC----------CCCCEEeHHHhC-CCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3567788888543 333333322223 78999999976 688899999999999999865 4888888764
Q ss_pred C---------------------CHHHHHHcCCCcc------------cEEEEEE-CCeEEeeeeecCCCCHHHHHHHHH
Q 029575 138 A---------------------NPQLIEEYKVYGL------------PTLILFK-NGQEVPESRREGAITKLKLKEYID 182 (191)
Q Consensus 138 ~---------------------~~~~~~~~~v~~~------------Pt~~~~~-~g~~~~~~~~~g~~~~~~l~~~i~ 182 (191)
. ...+.+.|++... |+.++++ +|+.+ ..+.|....+.+.+.++
T Consensus 74 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~--~~~~g~~~~~~~~~~~~ 150 (154)
T PRK09437 74 KPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIE--HVFDKFKTSNHHDVVLD 150 (154)
T ss_pred CHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEE--EEEcCCCcchhHHHHHH
Confidence 3 3346778887654 6778887 66555 56777765665554443
No 118
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.19 E-value=1.6e-10 Score=78.76 Aligned_cols=87 Identities=47% Similarity=0.849 Sum_probs=71.4
Q ss_pred CCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECC-CCHHHHHHcC--CCcccEEEEEECCeEEeeeeecC--
Q 029575 96 ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHD-ANPQLIEEYK--VYGLPTLILFKNGQEVPESRREG-- 170 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d-~~~~~~~~~~--v~~~Pt~~~~~~g~~~~~~~~~g-- 170 (191)
++++++.||++||++|+.+.|.+.++++++...+.++.+|.. ....+...|+ +..+|+++++.++... ....+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--~~~~~~~ 109 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEV--DRLVGGK 109 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchh--hhhhhcc
Confidence 789999999999999999999999999999877999999997 7889999999 9999999988888764 34444
Q ss_pred CCCHHHHHHHHHHH
Q 029575 171 AITKLKLKEYIDTL 184 (191)
Q Consensus 171 ~~~~~~l~~~i~~~ 184 (191)
......+.....++
T Consensus 110 ~~~~~~~~~~~~~~ 123 (127)
T COG0526 110 VLPKEALIDALGEL 123 (127)
T ss_pred cCCHHHHHHHhcch
Confidence 44555555544443
No 119
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.17 E-value=1e-10 Score=99.72 Aligned_cols=101 Identities=25% Similarity=0.490 Sum_probs=78.1
Q ss_pred EEcCCC-ChhhHHhcC-CCcEEEEEEcCCChhhhchHHHHH---HHHHHhCCCeEEEEEECCCC----HHHHHHcCCCcc
Q 029575 81 TEITES-EFPNTVLKS-ERPVLVEFVANWCGPCRLVAPAVE---WLAQEYGDRLTVVKIDHDAN----PQLIEEYKVYGL 151 (191)
Q Consensus 81 ~~l~~~-~~~~~~~~~-~k~vlv~F~a~wC~~C~~~~p~l~---~l~~~~~~~v~~~~vd~d~~----~~~~~~~~v~~~ 151 (191)
+.++.. +.++.+.++ +|+|+|+|||+||-.||.+++..- +...+..+ +...++|.+++ .++.++|++-+.
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~-~vlLqaDvT~~~p~~~~lLk~~~~~G~ 535 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQD-VVLLQADVTANDPAITALLKRLGVFGV 535 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCC-eEEEEeeecCCCHHHHHHHHHcCCCCC
Confidence 344444 455444443 459999999999999999998763 33444444 99999999865 367889999999
Q ss_pred cEEEEEE-CCeEEeeeeecCCCCHHHHHHHHHHH
Q 029575 152 PTLILFK-NGQEVPESRREGAITKLKLKEYIDTL 184 (191)
Q Consensus 152 Pt~~~~~-~g~~~~~~~~~g~~~~~~l~~~i~~~ 184 (191)
|++++|+ +|++. ....|.++.+.+.+++++.
T Consensus 536 P~~~ff~~~g~e~--~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 536 PTYLFFGPQGSEP--EILTGFLTADAFLEHLERA 567 (569)
T ss_pred CEEEEECCCCCcC--cCCcceecHHHHHHHHHHh
Confidence 9999998 67666 3589999999999999875
No 120
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.16 E-value=7.1e-11 Score=77.31 Aligned_cols=67 Identities=28% Similarity=0.618 Sum_probs=51.8
Q ss_pred HhcCCCcEEEEEEcCCChhhhchHHHH---HHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEEC
Q 029575 92 VLKSERPVLVEFVANWCGPCRLVAPAV---EWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKN 159 (191)
Q Consensus 92 ~~~~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~ 159 (191)
..+.+|+++|+|+++||++|+.+...+ .++.+.+.+++.++.||.+....... +...++|++++++.
T Consensus 13 A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~-~~~~~~P~~~~ldp 82 (82)
T PF13899_consen 13 AKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQ-FDRQGYPTFFFLDP 82 (82)
T ss_dssp HHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHH-HHHCSSSEEEEEET
T ss_pred HHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHH-hCCccCCEEEEeCC
Confidence 334599999999999999999999887 55666455669999999987654332 22277999999863
No 121
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.13 E-value=6.5e-10 Score=80.29 Aligned_cols=43 Identities=26% Similarity=0.358 Sum_probs=34.2
Q ss_pred CCcE-EEEEEcCCChhhhchHHHHHHHHHHhCC-CeEEEEEECCC
Q 029575 96 ERPV-LVEFVANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHDA 138 (191)
Q Consensus 96 ~k~v-lv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~ 138 (191)
++.+ |+.||++||++|+...+.|.++.+++.+ ++.++.|+.+.
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~ 67 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPES 67 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCC
Confidence 3455 5555699999999999999999999854 58888887654
No 122
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.13 E-value=8.7e-10 Score=83.18 Aligned_cols=117 Identities=15% Similarity=0.106 Sum_probs=80.9
Q ss_pred hhhccCcccccccccCCCCCcEEcCCCChhhHHhcCCCcEEEEEE-cCCChhhhchHHHHHHHHHHhCC-CeEEEEEECC
Q 029575 60 SYNNSLPKLAIRVRCGASSGITEITESEFPNTVLKSERPVLVEFV-ANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHD 137 (191)
Q Consensus 60 ~~~~~~p~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d 137 (191)
..+..+|+|+...... ....+++..++. +|.++|+|| +.||+.|....+.|.++..++.+ ++.++.|+.|
T Consensus 3 ~~~~~~p~f~~~~~~~--g~~~~v~L~d~~------Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D 74 (187)
T PRK10382 3 LINTKIKPFKNQAFKN--GEFIEVTEKDTE------GRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTD 74 (187)
T ss_pred ccCCcCCCcEEEEEeC--CcceEEEHHHhC------CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 3567788888654332 224444443332 789999999 99999999999999999999854 4778777754
Q ss_pred C-------------------------CHHHHHHcCC----Ccc--cEEEEEE-CCeEEeeeee--cCCCCHHHHHHHHHH
Q 029575 138 A-------------------------NPQLIEEYKV----YGL--PTLILFK-NGQEVPESRR--EGAITKLKLKEYIDT 183 (191)
Q Consensus 138 ~-------------------------~~~~~~~~~v----~~~--Pt~~~~~-~g~~~~~~~~--~g~~~~~~l~~~i~~ 183 (191)
. +..+++.|++ .++ |+.++++ +|+....... ....+.+++.+.|+.
T Consensus 75 ~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~a 154 (187)
T PRK10382 75 THFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKA 154 (187)
T ss_pred CHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHh
Confidence 3 3467788898 356 9999998 5554422111 122477888888866
Q ss_pred H
Q 029575 184 L 184 (191)
Q Consensus 184 ~ 184 (191)
+
T Consensus 155 l 155 (187)
T PRK10382 155 A 155 (187)
T ss_pred h
Confidence 5
No 123
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.09 E-value=1.5e-09 Score=82.90 Aligned_cols=114 Identities=17% Similarity=0.226 Sum_probs=77.9
Q ss_pred hhhccCcccccccccCCCCCcEEcCCCChhhHHhcCCCcEEE-EEEcCCChhhhchHHHHHHHHHHhCC-CeEEEEEECC
Q 029575 60 SYNNSLPKLAIRVRCGASSGITEITESEFPNTVLKSERPVLV-EFVANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHD 137 (191)
Q Consensus 60 ~~~~~~p~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~k~vlv-~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d 137 (191)
..++.+|+|++....+ .++..++ . ++.++| .||++||+.|....+.|.++++++.+ ++.++.|++|
T Consensus 3 ~vG~~aP~F~~~~~~g------~v~l~d~-----~-gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D 70 (202)
T PRK13190 3 KLGQKAPDFTVNTTKG------PIDLSKY-----K-GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVD 70 (202)
T ss_pred CCCCCCCCcEEecCCC------cEeHHHh-----C-CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3567788888643322 1222222 2 565554 68999999999999999999998864 4777777655
Q ss_pred C---------------------------CHHHHHHcCCC------cccEEEEEECCeEEeeeee----cCCCCHHHHHHH
Q 029575 138 A---------------------------NPQLIEEYKVY------GLPTLILFKNGQEVPESRR----EGAITKLKLKEY 180 (191)
Q Consensus 138 ~---------------------------~~~~~~~~~v~------~~Pt~~~~~~g~~~~~~~~----~g~~~~~~l~~~ 180 (191)
. +..+++.|++. .+|++++++.++++. ... .+..+.+++.+.
T Consensus 71 ~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~-~~~~~~~~~gr~~~ellr~ 149 (202)
T PRK13190 71 SIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVR-WMIYYPAETGRNIDEIIRI 149 (202)
T ss_pred CHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEE-EEEEeCCCCCCCHHHHHHH
Confidence 2 23577788884 589999998555542 222 344688999999
Q ss_pred HHHHhh
Q 029575 181 IDTLLD 186 (191)
Q Consensus 181 i~~~l~ 186 (191)
|+.+.-
T Consensus 150 l~~l~~ 155 (202)
T PRK13190 150 TKALQV 155 (202)
T ss_pred HHHhhh
Confidence 887753
No 124
>PF13728 TraF: F plasmid transfer operon protein
Probab=99.06 E-value=2e-09 Score=82.97 Aligned_cols=83 Identities=23% Similarity=0.375 Sum_probs=70.4
Q ss_pred CCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECC-----------CCHHHHHHcCCCcccEEEEEECCe-EE
Q 029575 96 ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHD-----------ANPQLIEEYKVYGLPTLILFKNGQ-EV 163 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d-----------~~~~~~~~~~v~~~Pt~~~~~~g~-~~ 163 (191)
++.-|++||.+.|++|+.+.|.++.++++|+ +.++.|++| .+..++++|+|..+|++++++.+. ..
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~ 197 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKW 197 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeE
Confidence 6788999999999999999999999999996 777777776 357899999999999999998444 33
Q ss_pred eeeeecCCCCHHHHHHHH
Q 029575 164 PESRREGAITKLKLKEYI 181 (191)
Q Consensus 164 ~~~~~~g~~~~~~l~~~i 181 (191)
. ....|..+.++|.+-|
T Consensus 198 ~-pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 198 Y-PVSQGFMSLDELEDRI 214 (215)
T ss_pred E-EEeeecCCHHHHHHhh
Confidence 2 5789999999887754
No 125
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.05 E-value=1e-09 Score=79.23 Aligned_cols=68 Identities=35% Similarity=0.698 Sum_probs=58.0
Q ss_pred CCcEEEEEEcCCChhhhchHHHHHHHHHHhCCC---eEEEEEECCCCH-------------------------HHHHHcC
Q 029575 96 ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDR---LTVVKIDHDANP-------------------------QLIEEYK 147 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~d~~~-------------------------~~~~~~~ 147 (191)
+|.+.++|.+.||++|+.+-|.+.+++++..+. +.++-|+.|.+. ++.++|+
T Consensus 33 gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~ 112 (157)
T KOG2501|consen 33 GKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYE 112 (157)
T ss_pred CcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhcc
Confidence 799999999999999999999999999988765 778888766532 4778999
Q ss_pred CCcccEEEEEE-CCeEE
Q 029575 148 VYGLPTLILFK-NGQEV 163 (191)
Q Consensus 148 v~~~Pt~~~~~-~g~~~ 163 (191)
|.++|++.+++ +|..+
T Consensus 113 v~~iP~l~i~~~dG~~v 129 (157)
T KOG2501|consen 113 VKGIPALVILKPDGTVV 129 (157)
T ss_pred cCcCceeEEecCCCCEe
Confidence 99999999998 55555
No 126
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=3.3e-09 Score=75.97 Aligned_cols=89 Identities=15% Similarity=0.328 Sum_probs=72.3
Q ss_pred hcCCCcEEEEEEcCCChhhhchHHHH---HHHHHHhCCCeEEEEEECCC----------------CHHHHHHcCCCcccE
Q 029575 93 LKSERPVLVEFVANWCGPCRLVAPAV---EWLAQEYGDRLTVVKIDHDA----------------NPQLIEEYKVYGLPT 153 (191)
Q Consensus 93 ~~~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~----------------~~~~~~~~~v~~~Pt 153 (191)
...++..+++|-.+.|.+|.++...+ +++.+-+..++.++.++... ..++++.|+|+++|+
T Consensus 39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPt 118 (182)
T COG2143 39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPT 118 (182)
T ss_pred CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCce
Confidence 34489999999999999999999877 44555566668888887532 247999999999999
Q ss_pred EEEEE-CCeEEeeeeecCCCCHHHHHHHHHH
Q 029575 154 LILFK-NGQEVPESRREGAITKLKLKEYIDT 183 (191)
Q Consensus 154 ~~~~~-~g~~~~~~~~~g~~~~~~l~~~i~~ 183 (191)
+++|+ +|+.+ ....|.+.++++...++-
T Consensus 119 fvFfdk~Gk~I--l~lPGY~ppe~Fl~vlkY 147 (182)
T COG2143 119 FVFFDKTGKTI--LELPGYMPPEQFLAVLKY 147 (182)
T ss_pred EEEEcCCCCEE--EecCCCCCHHHHHHHHHH
Confidence 99997 77887 689999999998876654
No 127
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.02 E-value=2.4e-09 Score=67.83 Aligned_cols=69 Identities=16% Similarity=0.436 Sum_probs=52.6
Q ss_pred EEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHH----HHHHcCCCcccEEEEEECCeEEeeeeecCCCCHH
Q 029575 100 LVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQ----LIEEYKVYGLPTLILFKNGQEVPESRREGAITKL 175 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~----~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~ 175 (191)
+..|+++||++|+.+.+.|++. ++.+..+|++.+++ +.+.+++.++|++++. |+.+ .| .+.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~~-----~g-~~~~ 67 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKII-----VG-FDPE 67 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEEE-----ee-CCHH
Confidence 5679999999999999887652 37888899987654 4567999999999873 5443 45 3778
Q ss_pred HHHHHHH
Q 029575 176 KLKEYID 182 (191)
Q Consensus 176 ~l~~~i~ 182 (191)
+|.++|+
T Consensus 68 ~i~~~i~ 74 (74)
T TIGR02196 68 KLDQLLE 74 (74)
T ss_pred HHHHHhC
Confidence 8877763
No 128
>PRK15000 peroxidase; Provisional
Probab=98.99 E-value=6.2e-09 Score=79.42 Aligned_cols=117 Identities=15% Similarity=0.223 Sum_probs=77.9
Q ss_pred hhccCcccccccccCCCCCcEEcCCCChhhHHhcCCCcEEEEEEc-CCChhhhchHHHHHHHHHHhCC-CeEEEEEECCC
Q 029575 61 YNNSLPKLAIRVRCGASSGITEITESEFPNTVLKSERPVLVEFVA-NWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHDA 138 (191)
Q Consensus 61 ~~~~~p~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~k~vlv~F~a-~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~ 138 (191)
.++.+|+|.+....+.-. .++..++.... .+|.++|+||. .||+.|....+.|.++++++.+ ++.++.|++|.
T Consensus 4 vg~~aPdF~~~~~~~~g~---~~~~~~l~~~~--~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~ 78 (200)
T PRK15000 4 VTRQAPDFTAAAVLGSGE---IVDKFNFKQHT--NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDS 78 (200)
T ss_pred CCCcCCCCEeecccCCCc---eeeeeeHHHHh--CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 467788887544322101 11111221111 37899999999 5999999999999999999964 57888887653
Q ss_pred ----------------------------CHHHHHHcCCC------cccEEEEEE-CCeEEeeeeecC----CCCHHHHHH
Q 029575 139 ----------------------------NPQLIEEYKVY------GLPTLILFK-NGQEVPESRREG----AITKLKLKE 179 (191)
Q Consensus 139 ----------------------------~~~~~~~~~v~------~~Pt~~~~~-~g~~~~~~~~~g----~~~~~~l~~ 179 (191)
+..+++.|++. .+|+.++++ +|+.. ..+.+ ..+.+++.+
T Consensus 79 ~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~--~~~~~~~~~gr~~~eilr 156 (200)
T PRK15000 79 EFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVR--HQVVNDLPLGRNIDEMLR 156 (200)
T ss_pred HHHHHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEE--EEEecCCCCCCCHHHHHH
Confidence 22466678887 799999998 55554 23333 247788888
Q ss_pred HHHHH
Q 029575 180 YIDTL 184 (191)
Q Consensus 180 ~i~~~ 184 (191)
.|+.+
T Consensus 157 ~l~al 161 (200)
T PRK15000 157 MVDAL 161 (200)
T ss_pred HHHHh
Confidence 87764
No 129
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.98 E-value=7e-09 Score=79.97 Aligned_cols=114 Identities=10% Similarity=0.110 Sum_probs=76.1
Q ss_pred hhhccCcccccccccCCCCCcEEcCCCChhhHHhcCCCc-EEEEEEcCCChhhhchHHHHHHHHHHhCC-CeEEEEEECC
Q 029575 60 SYNNSLPKLAIRVRCGASSGITEITESEFPNTVLKSERP-VLVEFVANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHD 137 (191)
Q Consensus 60 ~~~~~~p~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~k~-vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d 137 (191)
..++.+|+|.+....| ......... ++. +|+.||++||+.|....+.|.+++.+|.+ ++.++.|++|
T Consensus 3 ~~Gd~aPdF~l~t~~G----------~~~~~~~~~-Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D 71 (215)
T PRK13599 3 LLGEKFPSMEVVTTQG----------VKRLPEDYA-GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVD 71 (215)
T ss_pred CCCCCCCCCEeECCCC----------cEecHHHHC-CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3567788888644433 211111122 555 56789999999999999999999999954 5888888766
Q ss_pred C---------------------------CHHHHHHcCCC-------cccEEEEEEC-CeEEeeeee--cCCCCHHHHHHH
Q 029575 138 A---------------------------NPQLIEEYKVY-------GLPTLILFKN-GQEVPESRR--EGAITKLKLKEY 180 (191)
Q Consensus 138 ~---------------------------~~~~~~~~~v~-------~~Pt~~~~~~-g~~~~~~~~--~g~~~~~~l~~~ 180 (191)
. +..+++.|++. .+|++++++. |+......+ ....+.+++.+.
T Consensus 72 ~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~ 151 (215)
T PRK13599 72 QVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRA 151 (215)
T ss_pred CHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHH
Confidence 4 22467778873 6899999984 544321111 112467888888
Q ss_pred HHHH
Q 029575 181 IDTL 184 (191)
Q Consensus 181 i~~~ 184 (191)
|+.+
T Consensus 152 l~~l 155 (215)
T PRK13599 152 LKAL 155 (215)
T ss_pred HHHh
Confidence 8765
No 130
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=8.2e-10 Score=83.19 Aligned_cols=90 Identities=27% Similarity=0.444 Sum_probs=75.1
Q ss_pred CCCCcEEcC-CCChhhHHhcC-CCcEEEEEEcCCChhhhchHHHHHHHHHHhCC-CeEEEEEECCCCHHHHHHcCCC---
Q 029575 76 ASSGITEIT-ESEFPNTVLKS-ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHDANPQLIEEYKVY--- 149 (191)
Q Consensus 76 ~~~~v~~l~-~~~~~~~~~~~-~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~~~~~~v~--- 149 (191)
++..++..+ ++.++..+..+ ...++|.||+.|.+.|+...|.+.++..+|.. .+.|.+||+...++.+++|+|.
T Consensus 122 gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~ 201 (265)
T KOG0914|consen 122 GPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSP 201 (265)
T ss_pred CchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCc
Confidence 455678884 44455444433 56899999999999999999999999999976 4999999999999999999875
Q ss_pred ---cccEEEEEECCeEEee
Q 029575 150 ---GLPTLILFKNGQEVPE 165 (191)
Q Consensus 150 ---~~Pt~~~~~~g~~~~~ 165 (191)
..||+++|++|+++.|
T Consensus 202 ~srQLPT~ilFq~gkE~~R 220 (265)
T KOG0914|consen 202 GSRQLPTYILFQKGKEVSR 220 (265)
T ss_pred ccccCCeEEEEccchhhhc
Confidence 6999999999999853
No 131
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.97 E-value=4.4e-09 Score=67.43 Aligned_cols=70 Identities=16% Similarity=0.363 Sum_probs=50.3
Q ss_pred EEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHH-----cCCCcccEEEEEECCeEEeeeeecCCCCH
Q 029575 100 LVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEE-----YKVYGLPTLILFKNGQEVPESRREGAITK 174 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~-----~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~ 174 (191)
++.||++||++|+++++.|.++. +.+-.+|+++++..... +++..+|++ ++++|..+. ..+.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~------~~~~ 68 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT------NPSA 68 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec------CCCH
Confidence 67899999999999999886652 45667888877766555 389999997 466775541 3455
Q ss_pred HHHHHHHH
Q 029575 175 LKLKEYID 182 (191)
Q Consensus 175 ~~l~~~i~ 182 (191)
.++.+.|+
T Consensus 69 ~~~~~~l~ 76 (77)
T TIGR02200 69 AQVKAKLQ 76 (77)
T ss_pred HHHHHHhh
Confidence 56655543
No 132
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.97 E-value=4.2e-09 Score=63.80 Aligned_cols=60 Identities=35% Similarity=0.662 Sum_probs=51.4
Q ss_pred EEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHH---HcCCCcccEEEEEECC
Q 029575 100 LVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIE---EYKVYGLPTLILFKNG 160 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~---~~~v~~~Pt~~~~~~g 160 (191)
++.||..||++|+++.+.+.++ +....++.+..++++....... .+++..+|+++++++|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 5789999999999999999998 4444569999999998776554 8899999999999876
No 133
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.94 E-value=6.5e-09 Score=78.11 Aligned_cols=55 Identities=18% Similarity=0.201 Sum_probs=42.2
Q ss_pred EEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCC-CeEEEEEECC
Q 029575 81 TEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHD 137 (191)
Q Consensus 81 ~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d 137 (191)
..++++.+...-.. +|++||.|||+||++|+ ..+.|++++++|++ ++.++.+.|+
T Consensus 11 ~~~~G~~v~Ls~~~-GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 11 TTIDGEVTTLEKYA-GNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred ECCCCCEEeHHHhC-CCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeecc
Confidence 44444443322223 79999999999999997 58899999999976 5999999874
No 134
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.94 E-value=1e-08 Score=73.32 Aligned_cols=76 Identities=16% Similarity=0.221 Sum_probs=57.7
Q ss_pred CCCcEEEEEE-cCCChhhhchHHHHHHHHHHhCC-CeEEEEEECCC----------------------CHHHHHHcCCCc
Q 029575 95 SERPVLVEFV-ANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHDA----------------------NPQLIEEYKVYG 150 (191)
Q Consensus 95 ~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~----------------------~~~~~~~~~v~~ 150 (191)
.+++++|+|| +.||+.|....+.+.++.+++.. ++.|+.|..+. ...+.+.|++..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 3899999999 78999999999999999999843 58888887543 234667788776
Q ss_pred cc---------EEEEEE-CCeEEeeeeecCCC
Q 029575 151 LP---------TLILFK-NGQEVPESRREGAI 172 (191)
Q Consensus 151 ~P---------t~~~~~-~g~~~~~~~~~g~~ 172 (191)
.| ++++++ +|+.+ ..+.|..
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~--~~~~~~~ 130 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIR--YVEVEPL 130 (140)
T ss_pred ccccccCceeEEEEEECCCCcEE--EEEecCC
Confidence 65 788887 46555 4566654
No 135
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.94 E-value=4e-09 Score=83.53 Aligned_cols=104 Identities=25% Similarity=0.397 Sum_probs=75.0
Q ss_pred CCCcEEcCC-CChhhHHhcC--CCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccE
Q 029575 77 SSGITEITE-SEFPNTVLKS--ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPT 153 (191)
Q Consensus 77 ~~~v~~l~~-~~~~~~~~~~--~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt 153 (191)
-+.|.+|+. +.|...+.+. +..|||+||.+.++.|..+...|..|+.+|+. ++|++|.....+ +...|.+..+||
T Consensus 124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-vKFvkI~a~~~~-~~~~f~~~~LPt 201 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE-VKFVKIRASKCP-ASENFPDKNLPT 201 (265)
T ss_dssp --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-SEEEEEEECGCC-TTTTS-TTC-SE
T ss_pred CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEEehhccC-cccCCcccCCCE
Confidence 345889965 6777666543 34799999999999999999999999999998 999999988755 778899999999
Q ss_pred EEEEECCeEEeeeeecC-------CCCHHHHHHHHHHH
Q 029575 154 LILFKNGQEVPESRREG-------AITKLKLKEYIDTL 184 (191)
Q Consensus 154 ~~~~~~g~~~~~~~~~g-------~~~~~~l~~~i~~~ 184 (191)
+++|++|..+.. +.| ..+...|..+|.++
T Consensus 202 llvYk~G~l~~~--~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 202 LLVYKNGDLIGN--FVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp EEEEETTEEEEE--ECTGGGCT-TT--HHHHHHHHHTT
T ss_pred EEEEECCEEEEe--EEehHHhcCCCCCHHHHHHHHHHc
Confidence 999999988753 322 23455666666654
No 136
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.91 E-value=1.9e-08 Score=79.02 Aligned_cols=88 Identities=26% Similarity=0.321 Sum_probs=74.0
Q ss_pred CCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCC-----------HHHHHHcCCCcccEEEEEECC-eEE
Q 029575 96 ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDAN-----------PQLIEEYKVYGLPTLILFKNG-QEV 163 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~-----------~~~~~~~~v~~~Pt~~~~~~g-~~~ 163 (191)
++.-+++||...|++|+++.|.++.++++|+ +.++.|++|.. ..++++++|..+|++++++.+ +..
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence 5688999999999999999999999999997 67777776643 458899999999999999844 433
Q ss_pred eeeeecCCCCHHHHHHHHHHHhh
Q 029575 164 PESRREGAITKLKLKEYIDTLLD 186 (191)
Q Consensus 164 ~~~~~~g~~~~~~l~~~i~~~l~ 186 (191)
. ....|..+.++|.+-|..++.
T Consensus 228 ~-pv~~G~iS~deL~~Ri~~v~~ 249 (256)
T TIGR02739 228 S-PLAYGFISQDELKERILNVLT 249 (256)
T ss_pred E-EEeeccCCHHHHHHHHHHHHh
Confidence 2 578999999999988877654
No 137
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.91 E-value=8.9e-09 Score=73.84 Aligned_cols=42 Identities=29% Similarity=0.434 Sum_probs=37.6
Q ss_pred CCcEEEEEEcCCChh-hhchHHHHHHHHHHhCC----CeEEEEEECC
Q 029575 96 ERPVLVEFVANWCGP-CRLVAPAVEWLAQEYGD----RLTVVKIDHD 137 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~~----~v~~~~vd~d 137 (191)
+++++|.||++||++ |....+.++++.+++.+ ++.++.|..|
T Consensus 22 gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 22 GKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 789999999999998 99999999999998865 3888888765
No 138
>PRK13189 peroxiredoxin; Provisional
Probab=98.91 E-value=1.7e-08 Score=78.27 Aligned_cols=114 Identities=11% Similarity=0.213 Sum_probs=75.9
Q ss_pred hhhccCcccccccccCCCCCcEEcCCCChhhHHhcCCC-cEEEEEEcCCChhhhchHHHHHHHHHHhCC-CeEEEEEECC
Q 029575 60 SYNNSLPKLAIRVRCGASSGITEITESEFPNTVLKSER-PVLVEFVANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHD 137 (191)
Q Consensus 60 ~~~~~~p~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~k-~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d 137 (191)
..++.+|+|++....+. ++ +.+. .. ++ .+|+.||++||+.|....+.|.+++.++.+ ++.++.|++|
T Consensus 10 ~vG~~aPdF~~~~~~g~------~~---l~d~-~~-Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D 78 (222)
T PRK13189 10 LIGDKFPEFEVKTTHGP------IK---LPDD-YK-GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSID 78 (222)
T ss_pred cCCCcCCCcEeEcCCCC------Ee---eHHH-hC-CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 46778899986544331 11 1111 12 56 455678999999999999999999999864 4778887765
Q ss_pred C---------------------------CHHHHHHcCCC-------cccEEEEEECCeEEeeeeec----CCCCHHHHHH
Q 029575 138 A---------------------------NPQLIEEYKVY-------GLPTLILFKNGQEVPESRRE----GAITKLKLKE 179 (191)
Q Consensus 138 ~---------------------------~~~~~~~~~v~-------~~Pt~~~~~~g~~~~~~~~~----g~~~~~~l~~ 179 (191)
. +..+++.|++. .+|++++++..+.+. .... ...+.+++.+
T Consensus 79 ~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir-~~~~~~~~~gr~~~eilr 157 (222)
T PRK13189 79 QVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIR-AILYYPQEVGRNMDEILR 157 (222)
T ss_pred CHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEE-EEEecCCCCCCCHHHHHH
Confidence 3 23466778875 579999998444442 2222 3347788888
Q ss_pred HHHHHh
Q 029575 180 YIDTLL 185 (191)
Q Consensus 180 ~i~~~l 185 (191)
.|+.+.
T Consensus 158 ~l~alq 163 (222)
T PRK13189 158 LVKALQ 163 (222)
T ss_pred HHHHhh
Confidence 887653
No 139
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.90 E-value=2e-08 Score=64.67 Aligned_cols=72 Identities=28% Similarity=0.454 Sum_probs=55.8
Q ss_pred EEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEEeeeeecC-CCCHHHHHHH
Q 029575 102 EFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREG-AITKLKLKEY 180 (191)
Q Consensus 102 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g-~~~~~~l~~~ 180 (191)
.+++++|++|..+...++++...++ +.+--+|..+.+++ .+|+|.++|++++ ||+. .+.| ..+.++|.++
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~~----~~~G~~p~~~el~~~ 74 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGKV----VFVGRVPSKEELKEL 74 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTEE----EEESS--HHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCEE----EEEecCCCHHHHHHH
Confidence 3478889999999999999999984 66666677665666 9999999999955 6764 4678 7888999988
Q ss_pred HH
Q 029575 181 ID 182 (191)
Q Consensus 181 i~ 182 (191)
|+
T Consensus 75 l~ 76 (76)
T PF13192_consen 75 LE 76 (76)
T ss_dssp HH
T ss_pred hC
Confidence 75
No 140
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.90 E-value=2.1e-08 Score=76.74 Aligned_cols=111 Identities=14% Similarity=0.250 Sum_probs=72.7
Q ss_pred hccCcccccccccCCCCCcEEcCCCChhhHHhcCCC-cEEEEEEcCCChhhhchHHHHHHHHHHhCC-CeEEEEEECCC-
Q 029575 62 NNSLPKLAIRVRCGASSGITEITESEFPNTVLKSER-PVLVEFVANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHDA- 138 (191)
Q Consensus 62 ~~~~p~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~k-~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~- 138 (191)
|+.+|+|.+....+ .++ +.. ..+++ .+|+.||++||+.|....+.|.++++++.+ ++.++.|++|.
T Consensus 2 G~~aP~F~~~~~~g------~~~---l~d--~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~ 70 (203)
T cd03016 2 GDTAPNFEADTTHG------PIK---FHD--YLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSV 70 (203)
T ss_pred cCCCCCeEEecCCC------cEe---HHH--HcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCH
Confidence 45678887644332 111 111 12224 456688999999999999999999999864 48888887653
Q ss_pred --------------------------CHHHHHHcCCC----c----ccEEEEEECCeEEeeeeecC----CCCHHHHHHH
Q 029575 139 --------------------------NPQLIEEYKVY----G----LPTLILFKNGQEVPESRREG----AITKLKLKEY 180 (191)
Q Consensus 139 --------------------------~~~~~~~~~v~----~----~Pt~~~~~~g~~~~~~~~~g----~~~~~~l~~~ 180 (191)
+..+++.|++. + .|+.++++..+++. ..+.+ ..+.+++.+.
T Consensus 71 ~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~-~~~~~~~~~gr~~~ell~~ 149 (203)
T cd03016 71 ESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIR-LILYYPATTGRNFDEILRV 149 (203)
T ss_pred HHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEE-EEEecCCCCCCCHHHHHHH
Confidence 23567788875 2 35688887444442 33333 3467888888
Q ss_pred HHHH
Q 029575 181 IDTL 184 (191)
Q Consensus 181 i~~~ 184 (191)
|+++
T Consensus 150 l~~l 153 (203)
T cd03016 150 VDAL 153 (203)
T ss_pred HHHH
Confidence 8765
No 141
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.89 E-value=2.3e-08 Score=78.94 Aligned_cols=117 Identities=9% Similarity=0.129 Sum_probs=77.5
Q ss_pred hhhccCccccccc-ccCCCCCcEEcCCCChhhHHhcCCCcEEEEEE-cCCChhhhchHHHHHHHHHHhCC-CeEEEEEEC
Q 029575 60 SYNNSLPKLAIRV-RCGASSGITEITESEFPNTVLKSERPVLVEFV-ANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDH 136 (191)
Q Consensus 60 ~~~~~~p~~~~~~-~~~~~~~v~~l~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~ 136 (191)
..++.+|+|.+.. ..+. ...++..++ . .++.+|++|| ++||+.|....+.|.++++++.+ ++.++.|.+
T Consensus 69 ~vGd~aPdF~l~~~~~g~---~~~vsLsd~----~-kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~ 140 (261)
T PTZ00137 69 LVGKLMPSFKGTALLNDD---LVQFNSSDY----F-KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSV 140 (261)
T ss_pred cCCCCCCCCEeecccCCC---ceEEeHHHH----c-CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Confidence 4677888888543 2221 222222222 1 2667777777 89999999999999999999864 477777776
Q ss_pred CC----------------------------CHHHHHHcCCC-----cccEEEEEE-CCeEEeeeee--cCCCCHHHHHHH
Q 029575 137 DA----------------------------NPQLIEEYKVY-----GLPTLILFK-NGQEVPESRR--EGAITKLKLKEY 180 (191)
Q Consensus 137 d~----------------------------~~~~~~~~~v~-----~~Pt~~~~~-~g~~~~~~~~--~g~~~~~~l~~~ 180 (191)
|. +.++++.||+. ..|+.++++ +|+......+ ....+.+++.+.
T Consensus 141 Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~ 220 (261)
T PTZ00137 141 DSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRL 220 (261)
T ss_pred CCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHH
Confidence 54 23577888985 589999998 5655432211 223477888887
Q ss_pred HHHH
Q 029575 181 IDTL 184 (191)
Q Consensus 181 i~~~ 184 (191)
|+.+
T Consensus 221 l~al 224 (261)
T PTZ00137 221 FDAV 224 (261)
T ss_pred HHHh
Confidence 7755
No 142
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.87 E-value=6e-10 Score=84.80 Aligned_cols=99 Identities=29% Similarity=0.470 Sum_probs=88.1
Q ss_pred CcEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCC-CeEEEEEECCCCHHHHHHcCCCcccEEEEE
Q 029575 79 GITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHDANPQLIEEYKVYGLPTLILF 157 (191)
Q Consensus 79 ~v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~ 157 (191)
.++.++.++....+ ..-+++.|+++||+.|+...++|+.++.--.+ +|.+.+||+..++.+.-+|-|...||++=.
T Consensus 25 ~~~~~~eenw~~~l---~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHv 101 (248)
T KOG0913|consen 25 KLTRIDEENWKELL---TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHV 101 (248)
T ss_pred eeEEecccchhhhh---chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEe
Confidence 58899999998766 57789999999999999999999999876544 599999999999999999999999999888
Q ss_pred ECCeEEeeeeecCCCCHHHHHHHHHH
Q 029575 158 KNGQEVPESRREGAITKLKLKEYIDT 183 (191)
Q Consensus 158 ~~g~~~~~~~~~g~~~~~~l~~~i~~ 183 (191)
++|..- +|.|.++...+..++..
T Consensus 102 kDGeFr---rysgaRdk~dfisf~~~ 124 (248)
T KOG0913|consen 102 KDGEFR---RYSGARDKNDFISFEEH 124 (248)
T ss_pred eccccc---cccCcccchhHHHHHHh
Confidence 888765 89999999999998864
No 143
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.87 E-value=7.2e-08 Score=71.94 Aligned_cols=130 Identities=21% Similarity=0.339 Sum_probs=101.7
Q ss_pred ccccccccCC-CCchhhhhhhccCcccccccccCCCCCcEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHH
Q 029575 43 SSKNQLLFGS-RTNLSLKSYNNSLPKLAIRVRCGASSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWL 121 (191)
Q Consensus 43 ~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l 121 (191)
...+..|.|. .+.+.+..|... ..-+.+.++|.+++......+.+.+++.|..........+...++++
T Consensus 51 ~~~~~~y~~~~~~~~~l~~fI~~----------~~~P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 120 (184)
T PF13848_consen 51 DEKPVVYDGDKFTPEELKKFIKK----------NSFPLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDI 120 (184)
T ss_dssp TTSEEEESSSTTSHHHHHHHHHH----------HSSTSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHH
T ss_pred CCCceecccccCCHHHHHHHHHH----------hccccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHH
Confidence 3455678887 677888877764 22233789999998866655334478888877888889999999999
Q ss_pred HHHhCCCeEEEEEECCCCHHHHHHcCCC--cccEEEEEE-CCeEEeeeeecCCCCHHHHHHHHHH
Q 029575 122 AQEYGDRLTVVKIDHDANPQLIEEYKVY--GLPTLILFK-NGQEVPESRREGAITKLKLKEYIDT 183 (191)
Q Consensus 122 ~~~~~~~v~~~~vd~d~~~~~~~~~~v~--~~Pt~~~~~-~g~~~~~~~~~g~~~~~~l~~~i~~ 183 (191)
++++.+++.|+.+|++..+.+++.|++. .+|++++++ .++... ....+..+.+.|.+||++
T Consensus 121 a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~~~~~~~~~-~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 121 AKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPALVIFDSNKGKYY-YLPEGEITPESIEKFLND 184 (184)
T ss_dssp HHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSEEEEEETTTSEEE-E--SSCGCHHHHHHHHHH
T ss_pred HHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCEEEEEECCCCcEE-cCCCCCCCHHHHHHHhcC
Confidence 9999999999999999889999999998 899999998 333331 345889999999999974
No 144
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.86 E-value=1.2e-08 Score=71.00 Aligned_cols=69 Identities=26% Similarity=0.573 Sum_probs=48.6
Q ss_pred CCCcEEEEEEcC-------CChhhhchHHHHHHHHHHhCCCeEEEEEECCC-------CHHHHH--HcCCCcccEEEEEE
Q 029575 95 SERPVLVEFVAN-------WCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDA-------NPQLIE--EYKVYGLPTLILFK 158 (191)
Q Consensus 95 ~~k~vlv~F~a~-------wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~-------~~~~~~--~~~v~~~Pt~~~~~ 158 (191)
.++.++|+|+++ |||.|+...|.+++..+..+++..++.|.+.. +..+.+ +++++++||++-+.
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~ 97 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWE 97 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECT
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEEC
Confidence 468899999864 99999999999999888877778888887742 223444 69999999999997
Q ss_pred CCeEE
Q 029575 159 NGQEV 163 (191)
Q Consensus 159 ~g~~~ 163 (191)
.++..
T Consensus 98 ~~~rL 102 (119)
T PF06110_consen 98 TGERL 102 (119)
T ss_dssp SS-EE
T ss_pred CCCcc
Confidence 66443
No 145
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.85 E-value=4.2e-08 Score=75.67 Aligned_cols=113 Identities=11% Similarity=0.114 Sum_probs=75.5
Q ss_pred hhhhccCcccccccccCCCCCcEEcCCCChhhHHhcCCCcEE-EEEEcCCChhhhchHHHHHHHHHHhCC-CeEEEEEEC
Q 029575 59 KSYNNSLPKLAIRVRCGASSGITEITESEFPNTVLKSERPVL-VEFVANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDH 136 (191)
Q Consensus 59 ~~~~~~~p~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~k~vl-v~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~ 136 (191)
...++.+|+|++....| +-....... +|.++ +.||++||+.|....+.|.++++++.+ ++.++.|++
T Consensus 7 ~~iG~~aPdF~l~~~~G----------~~~l~~~~~-GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~ 75 (215)
T PRK13191 7 PLIGEKFPEMEVITTHG----------KIKLPDDYK-GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSV 75 (215)
T ss_pred ccCCCcCCCCEeecCCC----------CEEcHHHhC-CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEEC
Confidence 34677899998654433 111111112 55555 588999999999999999999999954 488888876
Q ss_pred CCC---------------------------HHHHHHcCCC-------cccEEEEEECCeEEeeeee-----cCCCCHHHH
Q 029575 137 DAN---------------------------PQLIEEYKVY-------GLPTLILFKNGQEVPESRR-----EGAITKLKL 177 (191)
Q Consensus 137 d~~---------------------------~~~~~~~~v~-------~~Pt~~~~~~g~~~~~~~~-----~g~~~~~~l 177 (191)
|.. .++++.|++. ..|+.++++..+.+. ... .| .+.+++
T Consensus 76 Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir-~~~~~~~~~g-r~~~ei 153 (215)
T PRK13191 76 DSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVR-LILYYPMEIG-RNIDEI 153 (215)
T ss_pred CCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEE-EEEecCCCCC-CCHHHH
Confidence 532 3466677863 479999998444442 222 33 477888
Q ss_pred HHHHHHH
Q 029575 178 KEYIDTL 184 (191)
Q Consensus 178 ~~~i~~~ 184 (191)
.+.|+.+
T Consensus 154 lr~l~al 160 (215)
T PRK13191 154 LRAIRAL 160 (215)
T ss_pred HHHHHHh
Confidence 8888765
No 146
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.85 E-value=4.6e-09 Score=74.57 Aligned_cols=83 Identities=25% Similarity=0.528 Sum_probs=50.3
Q ss_pred CCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHc---CCCcccEEEEEEC-CeEEeeeeecCC
Q 029575 96 ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEY---KVYGLPTLILFKN-GQEVPESRREGA 171 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~---~v~~~Pt~~~~~~-g~~~~~~~~~g~ 171 (191)
.+..++.|..+|||.|+...|.+.++++..++ +.+-.+.-|++.++..+| +...+|+++++++ |+.+ ..-|.
T Consensus 41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~-i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~l---g~wge 116 (129)
T PF14595_consen 41 KPYNILVITETWCGDCARNVPVLAKIAEANPN-IEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKEL---GRWGE 116 (129)
T ss_dssp S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TT-EEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EE---EEEES
T ss_pred CCcEEEEEECCCchhHHHHHHHHHHHHHhCCC-CeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEe---EEEcC
Confidence 66789999999999999999999999998764 666666667666666554 6889999999974 5555 33444
Q ss_pred CCHHHHHHHHHH
Q 029575 172 ITKLKLKEYIDT 183 (191)
Q Consensus 172 ~~~~~l~~~i~~ 183 (191)
-++.+.+++++
T Consensus 117 -rP~~~~~~~~~ 127 (129)
T PF14595_consen 117 -RPKEVQELVDE 127 (129)
T ss_dssp -S-HHHH-----
T ss_pred -CCHHHhhcccc
Confidence 34555555543
No 147
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.84 E-value=2.5e-08 Score=65.05 Aligned_cols=60 Identities=23% Similarity=0.370 Sum_probs=46.8
Q ss_pred EEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCH-----HHHHHcCCCcccEEEEEECCeEE
Q 029575 100 LVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANP-----QLIEEYKVYGLPTLILFKNGQEV 163 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-----~~~~~~~v~~~Pt~~~~~~g~~~ 163 (191)
++.|+++||++|+++.+.|+++. ....+.++.|+.+.+. .+.+.+++..+|++++ +|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~i 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKFI 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 57899999999999999999986 3334778888877554 2666779999999843 67655
No 148
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.81 E-value=7.2e-08 Score=75.43 Aligned_cols=88 Identities=20% Similarity=0.188 Sum_probs=71.7
Q ss_pred CCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCC-----------CHHHHHHcCCCcccEEEEEECC-eEE
Q 029575 96 ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDA-----------NPQLIEEYKVYGLPTLILFKNG-QEV 163 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~-----------~~~~~~~~~v~~~Pt~~~~~~g-~~~ 163 (191)
++.-|++||...|++|+++.|.++.++++|+ +.++.|++|. +...+++++|..+|++++++.+ +..
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg--~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYG--LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence 5688999999999999999999999999997 5666666553 2346789999999999999843 333
Q ss_pred eeeeecCCCCHHHHHHHHHHHhh
Q 029575 164 PESRREGAITKLKLKEYIDTLLD 186 (191)
Q Consensus 164 ~~~~~~g~~~~~~l~~~i~~~l~ 186 (191)
. ....|..+.++|.+-|..+..
T Consensus 221 ~-pv~~G~iS~deL~~Ri~~v~t 242 (248)
T PRK13703 221 R-PLSYGFITQDDLAKRFLNVST 242 (248)
T ss_pred E-EEeeccCCHHHHHHHHHHHHh
Confidence 2 578999999999988877654
No 149
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.80 E-value=5.3e-08 Score=67.89 Aligned_cols=96 Identities=15% Similarity=0.111 Sum_probs=72.2
Q ss_pred HHhcCCCcEEEEEEcC----CChhhhchHHHHHHHHHHhCCCeEEEEEECCCC--HHHHHHcCCCcccEEEEEE--CCeE
Q 029575 91 TVLKSERPVLVEFVAN----WCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDAN--PQLIEEYKVYGLPTLILFK--NGQE 162 (191)
Q Consensus 91 ~~~~~~k~vlv~F~a~----wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~--~~~~~~~~v~~~Pt~~~~~--~g~~ 162 (191)
...+..|.++|+|+++ ||..|+.... =+++.+-+..++.++..|++.. .+++..+++.++|++.++. +++.
T Consensus 12 ~ak~e~K~llVylhs~~~~~~~~fc~~~l~-~~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~ 90 (116)
T cd02991 12 DAKQELRFLLVYLHGDDHQDTDEFCRNTLC-APEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRM 90 (116)
T ss_pred HHHhhCCEEEEEEeCCCCccHHHHHHHHcC-CHHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCce
Confidence 3345589999999999 9999977651 1334444445688899998754 4689999999999999994 3332
Q ss_pred EeeeeecCCCCHHHHHHHHHHHhhh
Q 029575 163 VPESRREGAITKLKLKEYIDTLLDS 187 (191)
Q Consensus 163 ~~~~~~~g~~~~~~l~~~i~~~l~~ 187 (191)
....+..|..++++|...|+..++.
T Consensus 91 ~vv~~i~G~~~~~~ll~~L~~~~~~ 115 (116)
T cd02991 91 TIVGRLEGLIQPEDLINRLTFIMDA 115 (116)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 1125899999999999999988764
No 150
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.79 E-value=6.4e-08 Score=70.87 Aligned_cols=88 Identities=18% Similarity=0.366 Sum_probs=55.8
Q ss_pred CCCCcEEcCCC-ChhhHHhcCCCcEEEEEEcCCChhhhchHHHH---HHHHHHhCCCeEEEEEECCCCHHHHHHc-----
Q 029575 76 ASSGITEITES-EFPNTVLKSERPVLVEFVANWCGPCRLVAPAV---EWLAQEYGDRLTVVKIDHDANPQLIEEY----- 146 (191)
Q Consensus 76 ~~~~v~~l~~~-~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~~~~~~----- 146 (191)
+.+.|....-. +......+.+|+++|.++.+||..|+.|...- .++++.+..++.-++||.++.+++...|
T Consensus 16 a~~~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~ 95 (163)
T PF03190_consen 16 AHNPVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQ 95 (163)
T ss_dssp TTSSS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHH
T ss_pred ccCCCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHH
Confidence 34446666543 33444455589999999999999999998533 4566666556888999999999998888
Q ss_pred ---CCCcccEEEEEE-CCeEE
Q 029575 147 ---KVYGLPTLILFK-NGQEV 163 (191)
Q Consensus 147 ---~v~~~Pt~~~~~-~g~~~ 163 (191)
+..++|+.+|+. +|+.+
T Consensus 96 ~~~~~gGwPl~vfltPdg~p~ 116 (163)
T PF03190_consen 96 AMSGSGGWPLTVFLTPDGKPF 116 (163)
T ss_dssp HHHS---SSEEEEE-TTS-EE
T ss_pred HhcCCCCCCceEEECCCCCee
Confidence 788999999998 66665
No 151
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.79 E-value=1.7e-08 Score=74.80 Aligned_cols=93 Identities=26% Similarity=0.397 Sum_probs=79.8
Q ss_pred CCCCCcEEcC-CCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccE
Q 029575 75 GASSGITEIT-ESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPT 153 (191)
Q Consensus 75 ~~~~~v~~l~-~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt 153 (191)
.+.+...++. ..+|.....+ ...||+.||-+.-..|+.+...|+.+++.+-+ ..|++||+...|-++.+++|+.+|+
T Consensus 63 ~GhG~y~ev~~Ekdf~~~~~k-S~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae~~PFlv~kL~IkVLP~ 140 (211)
T KOG1672|consen 63 KGHGEYEEVASEKDFFEEVKK-SEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAEKAPFLVTKLNIKVLPT 140 (211)
T ss_pred cCCceEEEeccHHHHHHHhhc-CceEEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEecccCceeeeeeeeeEeee
Confidence 3445577776 4667766655 67899999999999999999999999999977 9999999999999999999999999
Q ss_pred EEEEECCeEEeeeeecCC
Q 029575 154 LILFKNGQEVPESRREGA 171 (191)
Q Consensus 154 ~~~~~~g~~~~~~~~~g~ 171 (191)
+.+|.+|+.+. +..|.
T Consensus 141 v~l~k~g~~~D--~iVGF 156 (211)
T KOG1672|consen 141 VALFKNGKTVD--YVVGF 156 (211)
T ss_pred EEEEEcCEEEE--EEeeH
Confidence 99999999984 55554
No 152
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.73 E-value=7.8e-08 Score=75.02 Aligned_cols=81 Identities=22% Similarity=0.344 Sum_probs=61.6
Q ss_pred CCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEE---------------------------------------
Q 029575 95 SERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKID--------------------------------------- 135 (191)
Q Consensus 95 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd--------------------------------------- 135 (191)
+++.+++.|+.+.||+|+++++.+.++.+ .++.+..+.
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~---~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA---LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc---CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 36788999999999999999999888754 124333321
Q ss_pred -----CCCCHHHHHHcCCCcccEEEEEECCeEEeeeeecCCCCHHHHHHHHHHH
Q 029575 136 -----HDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTL 184 (191)
Q Consensus 136 -----~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~ 184 (191)
++++.++++++||.++|+++ +.+|+.+ .|..+.++|.++|++.
T Consensus 183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~-----~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGTPAIV-LSNGTLV-----PGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccchHHHhHHHHHHcCCccccEEE-EcCCeEe-----eCCCCHHHHHHHHHHc
Confidence 11234578899999999998 5677655 7889999999999864
No 153
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.73 E-value=1.5e-07 Score=61.79 Aligned_cols=76 Identities=20% Similarity=0.288 Sum_probs=57.6
Q ss_pred EEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCH----HHHHHcC--CCcccEEEEEECCeEEeeeeecCCC
Q 029575 99 VLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANP----QLIEEYK--VYGLPTLILFKNGQEVPESRREGAI 172 (191)
Q Consensus 99 vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~----~~~~~~~--v~~~Pt~~~~~~g~~~~~~~~~g~~ 172 (191)
.++.|+.+||++|++....|+++..++. ++.+..+|++++. ++...++ +..+|++++ +|+.+ |
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~-~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~i------g-- 70 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD-DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHI------G-- 70 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc-CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEE------c--
Confidence 4788999999999999999999988764 4888888888653 4555444 578999854 77665 1
Q ss_pred CHHHHHHHHHHHh
Q 029575 173 TKLKLKEYIDTLL 185 (191)
Q Consensus 173 ~~~~l~~~i~~~l 185 (191)
..++|.+++++.+
T Consensus 71 g~~~~~~~~~~~~ 83 (85)
T PRK11200 71 GCTDFEAYVKENL 83 (85)
T ss_pred CHHHHHHHHHHhc
Confidence 4577777777654
No 154
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.71 E-value=9.5e-08 Score=72.84 Aligned_cols=116 Identities=12% Similarity=0.173 Sum_probs=73.8
Q ss_pred hhhccCccccccccc-CCCCCcEEcCCCChhhHHhcCCCcEEEEEEc-CCChhhhchHHHHHHHHHHhCC-CeEEEEEEC
Q 029575 60 SYNNSLPKLAIRVRC-GASSGITEITESEFPNTVLKSERPVLVEFVA-NWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDH 136 (191)
Q Consensus 60 ~~~~~~p~~~~~~~~-~~~~~v~~l~~~~~~~~~~~~~k~vlv~F~a-~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~ 136 (191)
..++.+|+|++.... ... ...++..++ . ++.++|+||. .||+.|....+.|.++++++.+ ++.++.|++
T Consensus 7 ~~G~~aPdF~~~~~~~~~~--~~~v~l~d~-----~-Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~ 78 (199)
T PTZ00253 7 KINHPAPSFEEVALMPNGS--FKKISLSSY-----K-GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSM 78 (199)
T ss_pred ccCCcCCCCEeeccccCCC--CcEEeHHHH-----C-CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 456788888743210 000 112222222 2 7889999995 8899999999999999999865 588888876
Q ss_pred CC----------------------------CHHHHHHcCCC------cccEEEEEECCeEEeeeeecC----CCCHHHHH
Q 029575 137 DA----------------------------NPQLIEEYKVY------GLPTLILFKNGQEVPESRREG----AITKLKLK 178 (191)
Q Consensus 137 d~----------------------------~~~~~~~~~v~------~~Pt~~~~~~g~~~~~~~~~g----~~~~~~l~ 178 (191)
|. ..++++.|++. .+|+.+++++.+.+. ....+ ..+.+++.
T Consensus 79 d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~-~~~~~~~~~~r~~~e~l 157 (199)
T PTZ00253 79 DSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLR-QITVNDMPVGRNVEEVL 157 (199)
T ss_pred CCHHHHHHHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEE-EEEecCCCCCCCHHHHH
Confidence 52 23467788885 478999998444432 23222 23555666
Q ss_pred HHHHHH
Q 029575 179 EYIDTL 184 (191)
Q Consensus 179 ~~i~~~ 184 (191)
+.|+.+
T Consensus 158 ~~l~a~ 163 (199)
T PTZ00253 158 RLLEAF 163 (199)
T ss_pred HHHHhh
Confidence 666544
No 155
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.64 E-value=1e-06 Score=71.07 Aligned_cols=106 Identities=16% Similarity=0.249 Sum_probs=75.9
Q ss_pred CCcEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchH------HHHHHHHHHh--CCCeEEEEEECCCCHHHHHHcCCC
Q 029575 78 SGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVA------PAVEWLAQEY--GDRLTVVKIDHDANPQLIEEYKVY 149 (191)
Q Consensus 78 ~~v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~------p~l~~l~~~~--~~~v~~~~vd~d~~~~~~~~~~v~ 149 (191)
..|..|+.+||.+.+.+ .+..+|+|+.+--.. +... ..+-+|+.+. ..++.|+.||..++..+++++|+.
T Consensus 34 DRVi~LneKNfk~~lKk-yd~l~l~yh~p~~~d-k~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~ 111 (383)
T PF01216_consen 34 DRVIDLNEKNFKRALKK-YDVLVLYYHEPVESD-KVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVE 111 (383)
T ss_dssp --CEEE-TTTHHHHHHH--SEEEEEEE--STSS-HHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--
T ss_pred cceEEcchhHHHHHHHh-hcEEEEEEecCCccC-HHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCcc
Confidence 34899999999987766 788888898875322 2221 2233444444 225999999999999999999999
Q ss_pred cccEEEEEECCeEEeeeeecCCCCHHHHHHHHHHHhhhh
Q 029575 150 GLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLLDSI 188 (191)
Q Consensus 150 ~~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~l~~~ 188 (191)
..+++++|++|..+ .|.|.++++.|.+||..+++..
T Consensus 112 E~~SiyVfkd~~~I---EydG~~saDtLVeFl~dl~edP 147 (383)
T PF01216_consen 112 EEGSIYVFKDGEVI---EYDGERSADTLVEFLLDLLEDP 147 (383)
T ss_dssp STTEEEEEETTEEE---EE-S--SHHHHHHHHHHHHSSS
T ss_pred ccCcEEEEECCcEE---EecCccCHHHHHHHHHHhcccc
Confidence 99999999999998 7889999999999999998743
No 156
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.64 E-value=2e-07 Score=81.48 Aligned_cols=123 Identities=23% Similarity=0.284 Sum_probs=88.0
Q ss_pred ccccccccCCCCchhhhhhhccCcccccccccCCCCCcEEcCCCChhhHHhcCCCc-EEEEEEcCCChhhhchHHHHHHH
Q 029575 43 SSKNQLLFGSRTNLSLKSYNNSLPKLAIRVRCGASSGITEITESEFPNTVLKSERP-VLVEFVANWCGPCRLVAPAVEWL 121 (191)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~k~-vlv~F~a~wC~~C~~~~p~l~~l 121 (191)
.....+|.|-.....|..|...+-... +. -..|+.+.. +.+.+=+++ .+-.|.++||++|......++++
T Consensus 431 ~~~~i~f~g~P~G~Ef~s~i~~i~~~~-----~~---~~~l~~~~~-~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~ 501 (555)
T TIGR03143 431 NYTGLKFHGVPSGHELNSFILALYNAA-----GP---GQPLGEELL-EKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRI 501 (555)
T ss_pred cccceEEEecCccHhHHHHHHHHHHhc-----CC---CCCCCHHHH-HHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHH
Confidence 344567777777666666655432221 21 134433222 233332444 46667899999999999999999
Q ss_pred HHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEEeeeeecCCCCHHHHHHHH
Q 029575 122 AQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYI 181 (191)
Q Consensus 122 ~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~i 181 (191)
+...++ +..-.+|..+.++++++|+|.++|++++ +|+.+ +.|..+.+++.++|
T Consensus 502 ~~~~~~-i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~~----~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 502 ASLNPN-VEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQV----YFGKKTIEEMLELI 554 (555)
T ss_pred HHhCCC-ceEEEEECcccHHHHHhCCceecCEEEE--CCEEE----EeeCCCHHHHHHhh
Confidence 998774 9999999999999999999999999977 66544 56888999998876
No 157
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=1.6e-07 Score=64.38 Aligned_cols=64 Identities=17% Similarity=0.429 Sum_probs=53.8
Q ss_pred CCcEEEEEEc--------CCChhhhchHHHHHHHHHHhCCCeEEEEEECCC-------CHHHHHHcCC-CcccEEEEEEC
Q 029575 96 ERPVLVEFVA--------NWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDA-------NPQLIEEYKV-YGLPTLILFKN 159 (191)
Q Consensus 96 ~k~vlv~F~a--------~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~-------~~~~~~~~~v-~~~Pt~~~~~~ 159 (191)
++-++|+|++ +|||.|++..|.+.+..+..+.++.|+.|++.+ +..+....++ .++||++-+++
T Consensus 25 ~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 25 GKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred CceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcC
Confidence 5669999996 499999999999999999888889999999754 3356666777 99999999874
No 158
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.59 E-value=1.7e-06 Score=61.56 Aligned_cols=107 Identities=14% Similarity=0.301 Sum_probs=80.8
Q ss_pred CcEEcCCCChhhHHhcCCCcEEEEEEcC--CChh-h-hchHHHHHHHHHHhCCC-eEEEEEECCCCHHHHHHcCCC--cc
Q 029575 79 GITEITESEFPNTVLKSERPVLVEFVAN--WCGP-C-RLVAPAVEWLAQEYGDR-LTVVKIDHDANPQLIEEYKVY--GL 151 (191)
Q Consensus 79 ~v~~l~~~~~~~~~~~~~k~vlv~F~a~--wC~~-C-~~~~p~l~~l~~~~~~~-v~~~~vd~d~~~~~~~~~~v~--~~ 151 (191)
.|.+|+++++....=.+++..+|.|.-. .|.. + ......|++++++|.++ +.|+++|.+....+.+.||+. .+
T Consensus 3 ~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~ 82 (130)
T cd02983 3 EIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGY 82 (130)
T ss_pred ceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCC
Confidence 3788988877544333345566666432 2322 3 35678889999999999 999999999999999999995 49
Q ss_pred cEEEEEECCe-EEeeeeecCCCCHHHHHHHHHHHhhh
Q 029575 152 PTLILFKNGQ-EVPESRREGAITKLKLKEYIDTLLDS 187 (191)
Q Consensus 152 Pt~~~~~~g~-~~~~~~~~g~~~~~~l~~~i~~~l~~ 187 (191)
|++++++..+ +. ..+.|..+.+.+.+|+++++..
T Consensus 83 P~v~i~~~~~~KY--~~~~~~~t~e~i~~Fv~~~l~G 117 (130)
T cd02983 83 PAMVAINFRKMKF--ATLKGSFSEDGINEFLRELSYG 117 (130)
T ss_pred CEEEEEecccCcc--ccccCccCHHHHHHHHHHHHcC
Confidence 9999997543 33 1278999999999999999864
No 159
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.58 E-value=1.5e-07 Score=71.54 Aligned_cols=76 Identities=26% Similarity=0.366 Sum_probs=55.3
Q ss_pred CCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEE----------------------------------------
Q 029575 96 ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKID---------------------------------------- 135 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd---------------------------------------- 135 (191)
++..++.|+.++|++|+++.+.+.+ ..+++.+..+.
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~ 152 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAA 152 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcc
Confidence 6899999999999999999998876 22233333221
Q ss_pred -----CCCCHHHHHHcCCCcccEEEEEECCeEEeeeeecCCCCHHHHHHHH
Q 029575 136 -----HDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYI 181 (191)
Q Consensus 136 -----~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~i 181 (191)
++++..++++++|.++|+++ +.+|+.+ .|..+.++|.++|
T Consensus 153 ~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~~-----~G~~~~~~l~~~L 197 (197)
T cd03020 153 SCDNPVAANLALGRQLGVNGTPTIV-LADGRVV-----PGAPPAAQLEALL 197 (197)
T ss_pred ccCchHHHHHHHHHHcCCCcccEEE-ECCCeEe-----cCCCCHHHHHhhC
Confidence 11223577889999999997 6777665 6788888887764
No 160
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.57 E-value=1.8e-06 Score=59.71 Aligned_cols=100 Identities=22% Similarity=0.438 Sum_probs=80.2
Q ss_pred CChhhHHhcC-CCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEEe
Q 029575 86 SEFPNTVLKS-ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVP 164 (191)
Q Consensus 86 ~~~~~~~~~~-~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 164 (191)
.+.+..+... .++++|-|...|-+.|.++...|.+++....+-..++-||+++.+++.+-|++...|++++|-+++.+.
T Consensus 12 ~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kHmk 91 (142)
T KOG3414|consen 12 WEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKHMK 91 (142)
T ss_pred HHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCceEE
Confidence 3444444433 789999999999999999999999999999887788889999999999999999999999998888764
Q ss_pred eeeecCCC--------CHHHHHHHHHHHh
Q 029575 165 ESRREGAI--------TKLKLKEYIDTLL 185 (191)
Q Consensus 165 ~~~~~g~~--------~~~~l~~~i~~~l 185 (191)
-....|.. +++++.+.|+-+.
T Consensus 92 iD~gtgdn~Kin~~~~~kq~~Idiie~iy 120 (142)
T KOG3414|consen 92 IDLGTGDNNKINFAFEDKQEFIDIIETIY 120 (142)
T ss_pred EeeCCCCCceEEEEeccHHHHHHHHHHHH
Confidence 33344433 5567777776554
No 161
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=98.53 E-value=3.5e-07 Score=72.15 Aligned_cols=83 Identities=13% Similarity=0.224 Sum_probs=59.8
Q ss_pred CCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEEC--------------------------------------
Q 029575 95 SERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDH-------------------------------------- 136 (191)
Q Consensus 95 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~-------------------------------------- 136 (191)
+.+.+++.|+.+.|++|++++..+.++.+. ++|.+..+..
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~ 193 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKP 193 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCc
Confidence 367889999999999999999998887654 2244433320
Q ss_pred ------------CCCHHHHHHcCCCcccEEEEEEC-CeEEeeeeecCCCCHHHHHHHHH
Q 029575 137 ------------DANPQLIEEYKVYGLPTLILFKN-GQEVPESRREGAITKLKLKEYID 182 (191)
Q Consensus 137 ------------d~~~~~~~~~~v~~~Pt~~~~~~-g~~~~~~~~~g~~~~~~l~~~i~ 182 (191)
+++.++.+++||.++|++++-+. |... ...|....++|.+.|.
T Consensus 194 ~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~---~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 194 PASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQ---QVVGLPDPAQLAEIMG 249 (251)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEE---EecCCCCHHHHHHHhC
Confidence 01123677899999999988763 4322 5689989998888775
No 162
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.53 E-value=6.1e-07 Score=77.85 Aligned_cols=127 Identities=19% Similarity=0.236 Sum_probs=93.3
Q ss_pred cccccccccCCCCchhhhhhhccCcccccccccCCCCCcEEcCCCChhhHHhc-CCCcEEEEEEcCCChhhhchHHHHHH
Q 029575 42 TSSKNQLLFGSRTNLSLKSYNNSLPKLAIRVRCGASSGITEITESEFPNTVLK-SERPVLVEFVANWCGPCRLVAPAVEW 120 (191)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~k~vlv~F~a~wC~~C~~~~p~l~~ 120 (191)
+......|.|-.....+..|...+-... +. -..|+.+... .+.+ .++.-+..|++++|++|......+++
T Consensus 70 ~~~~~i~f~g~P~g~Ef~s~i~~i~~~~-----~~---~~~l~~~~~~-~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~ 140 (517)
T PRK15317 70 GEDTGVRFAGIPMGHEFTSLVLALLQVG-----GH---PPKLDQEVIE-QIKALDGDFHFETYVSLSCHNCPDVVQALNL 140 (517)
T ss_pred CccceEEEEecCccHHHHHHHHHHHHhc-----CC---CCCCCHHHHH-HHHhcCCCeEEEEEEcCCCCCcHHHHHHHHH
Confidence 4446688888888777777765432222 21 1344333322 3332 24556899999999999999999999
Q ss_pred HHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEEeeeeecCCCCHHHHHHHHHHH
Q 029575 121 LAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTL 184 (191)
Q Consensus 121 l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~ 184 (191)
++...+ +|.+-.||..+.++++.+|+|.++|++++ +|+.. +.|..+.++|.+.+.+.
T Consensus 141 ~a~~~~-~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~----~~g~~~~~~~~~~~~~~ 197 (517)
T PRK15317 141 MAVLNP-NITHTMIDGALFQDEVEARNIMAVPTVFL--NGEEF----GQGRMTLEEILAKLDTG 197 (517)
T ss_pred HHHhCC-CceEEEEEchhCHhHHHhcCCcccCEEEE--CCcEE----EecCCCHHHHHHHHhcc
Confidence 998776 49999999999999999999999999965 55543 57888888888887653
No 163
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.52 E-value=1e-06 Score=55.35 Aligned_cols=67 Identities=16% Similarity=0.377 Sum_probs=47.0
Q ss_pred EEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHc----CCCcccEEEEEECCeEEeeeeecCCCCHH
Q 029575 100 LVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEY----KVYGLPTLILFKNGQEVPESRREGAITKL 175 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~----~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~ 175 (191)
++.|+.+||++|+.+...+.+. ++.+..++++.+....+.| ++..+|++++ +|+.+ .| .+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~~i-----~g-~~~~ 67 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDEHL-----SG-FRPD 67 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCEEE-----ec-CCHH
Confidence 5789999999999988777652 3667778887766544444 6889999965 45433 33 4666
Q ss_pred HHHHH
Q 029575 176 KLKEY 180 (191)
Q Consensus 176 ~l~~~ 180 (191)
+|.++
T Consensus 68 ~l~~~ 72 (73)
T cd02976 68 KLRAL 72 (73)
T ss_pred HHHhh
Confidence 66654
No 164
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.50 E-value=1.1e-06 Score=57.98 Aligned_cols=75 Identities=21% Similarity=0.259 Sum_probs=54.5
Q ss_pred EEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCH----HHHHHcCC--CcccEEEEEECCeEEeeeeecCCCC
Q 029575 100 LVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANP----QLIEEYKV--YGLPTLILFKNGQEVPESRREGAIT 173 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~----~~~~~~~v--~~~Pt~~~~~~g~~~~~~~~~g~~~ 173 (191)
++.|..+||++|.++...|+++..++.+ +.+..+|++.+. ++...++- ..+|.+++ +|+.+ | .
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~-i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~i------g--G 70 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERAD-FEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHV------G--G 70 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCC-CcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEe------c--C
Confidence 6789999999999999999888765543 777788877533 45566663 78999954 66554 2 3
Q ss_pred HHHHHHHHHHHh
Q 029575 174 KLKLKEYIDTLL 185 (191)
Q Consensus 174 ~~~l~~~i~~~l 185 (191)
.++|.+++++..
T Consensus 71 ~~dl~~~~~~~~ 82 (86)
T TIGR02183 71 CTDFEQLVKENF 82 (86)
T ss_pred HHHHHHHHHhcc
Confidence 577888777654
No 165
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.50 E-value=8e-07 Score=64.15 Aligned_cols=37 Identities=38% Similarity=0.566 Sum_probs=31.0
Q ss_pred CCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEE
Q 029575 96 ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVK 133 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~ 133 (191)
.+++++.|+..+|++|+.+.+.++++..++++ +.+..
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~-~~~~~ 41 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD-VRVVF 41 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCCC-ceEEE
Confidence 67899999999999999999999998887764 44443
No 166
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.49 E-value=2.3e-06 Score=59.19 Aligned_cols=102 Identities=16% Similarity=0.112 Sum_probs=77.9
Q ss_pred cEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHH---hCCCeEEEEEECCCCHHHHHHcCCCc--ccEE
Q 029575 80 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQE---YGDRLTVVKIDHDANPQLIEEYKVYG--LPTL 154 (191)
Q Consensus 80 v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~---~~~~v~~~~vd~d~~~~~~~~~~v~~--~Pt~ 154 (191)
|.+++.+++...... +.+..+.|+.+ ..-......+++++++ +.+++.|+.+|.+......+.||+.. +|.+
T Consensus 1 ~~e~t~e~~~~~~~~-~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i 77 (111)
T cd03072 1 VREITFENAEELTEE-GLPFLILFHDK--DDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVI 77 (111)
T ss_pred CcccccccHHHHhcC-CCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEE
Confidence 467888888755544 44555555522 2336678899999999 99999999999998877999999997 8999
Q ss_pred EEEECCe-EEeeee-ecCCCCHHHHHHHHHHHhh
Q 029575 155 ILFKNGQ-EVPESR-REGAITKLKLKEYIDTLLD 186 (191)
Q Consensus 155 ~~~~~g~-~~~~~~-~~g~~~~~~l~~~i~~~l~ 186 (191)
.+..... .. +. ..+..+.+.|.+|++++++
T Consensus 78 ~i~~~~~~~K--y~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 78 AIDSFRHMYL--FPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred EEEcchhcCc--CCCCccccCHHHHHHHHHHHhc
Confidence 9987332 22 23 6688899999999999875
No 167
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1.7e-06 Score=63.00 Aligned_cols=114 Identities=15% Similarity=0.237 Sum_probs=79.3
Q ss_pred hhhhccCcccccccccCCCCCcEEcCCCChhhHHhcCCCcEEEEEE-cCCChhhhchHHHHHHHHHHhCC-CeEEEEEEC
Q 029575 59 KSYNNSLPKLAIRVRCGASSGITEITESEFPNTVLKSERPVLVEFV-ANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDH 136 (191)
Q Consensus 59 ~~~~~~~p~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~ 136 (191)
.+.++++|+|+++...+.. ++..++. ++.+||+|| ..|++.|....-.|++...++.+ +..++.|..
T Consensus 4 l~~G~~aPdF~Lp~~~g~~-----v~Lsd~~------Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~ 72 (157)
T COG1225 4 LKVGDKAPDFELPDQDGET-----VSLSDLR------GKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISP 72 (157)
T ss_pred CCCCCcCCCeEeecCCCCE-----EehHHhc------CCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 3567899999987776642 3333343 789999998 67999999999999999988866 588888874
Q ss_pred ---------------------CCCHHHHHHcCCC------------cccEEEEEECCeEEeeeeecCCC---CHHHHHHH
Q 029575 137 ---------------------DANPQLIEEYKVY------------GLPTLILFKNGQEVPESRREGAI---TKLKLKEY 180 (191)
Q Consensus 137 ---------------------d~~~~~~~~~~v~------------~~Pt~~~~~~g~~~~~~~~~g~~---~~~~l~~~ 180 (191)
|.+.++++.|++. ..++.++|+.++.+. ..+.... ..+++.+.
T Consensus 73 Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~-~~~~~v~~~~h~~~vl~~ 151 (157)
T COG1225 73 DSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIR-YVWRKVKVKGHADEVLAA 151 (157)
T ss_pred CCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEE-EEecCCCCcccHHHHHHH
Confidence 4456788888874 357888888544442 3333322 33455555
Q ss_pred HHHH
Q 029575 181 IDTL 184 (191)
Q Consensus 181 i~~~ 184 (191)
|+++
T Consensus 152 l~~l 155 (157)
T COG1225 152 LKKL 155 (157)
T ss_pred HHHh
Confidence 5543
No 168
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=1.3e-07 Score=71.82 Aligned_cols=86 Identities=20% Similarity=0.349 Sum_probs=72.1
Q ss_pred CCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEEeeeeecCCCCH
Q 029575 95 SERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITK 174 (191)
Q Consensus 95 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~ 174 (191)
.++..++.||+.||..|.++...+..+++.. .++.|++++.++.++++..+.+...|.+.++..|+.+ .+..|.. +
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v--~~l~~~~-~ 91 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKV--DRLSGAD-P 91 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhHHHHHHHHhcCceeeeeecchhh--hhhhccC-c
Confidence 5899999999999999999999999999988 4599999999999999999999999999999988888 3556653 3
Q ss_pred HHHHHHHHHH
Q 029575 175 LKLKEYIDTL 184 (191)
Q Consensus 175 ~~l~~~i~~~ 184 (191)
..+...++.+
T Consensus 92 ~~~~~~~~~~ 101 (227)
T KOG0911|consen 92 PFLVSKVEKL 101 (227)
T ss_pred HHHHHHHHHh
Confidence 3333333333
No 169
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.35 E-value=4.2e-06 Score=61.08 Aligned_cols=81 Identities=28% Similarity=0.400 Sum_probs=63.2
Q ss_pred CCcEEEEEEcCCChhhhchHHHHHHHHHHh--CCCeEEEEEECCCCH---------------------------------
Q 029575 96 ERPVLVEFVANWCGPCRLVAPAVEWLAQEY--GDRLTVVKIDHDANP--------------------------------- 140 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~--~~~v~~~~vd~d~~~--------------------------------- 140 (191)
.+++|+.|+...|++|.++.+.+.++.+++ .+++.|+..++-...
T Consensus 12 a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (162)
T PF13462_consen 12 APITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQEN 91 (162)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCHS
T ss_pred CCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhc
Confidence 678899999999999999999999999998 667888877642110
Q ss_pred -----------------------------------HHHHHcCCCcccEEEEEECCeEEeeeeecCCCCHHHHHHHHHH
Q 029575 141 -----------------------------------QLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDT 183 (191)
Q Consensus 141 -----------------------------------~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~i~~ 183 (191)
..+++++|.++||+++ +|+.+ .|..+.+++.++|++
T Consensus 92 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~~-----~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 92 FENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKYV-----VGPYTIEELKELIDK 162 (162)
T ss_dssp TSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCEE-----ETTTSHHHHHHHHHH
T ss_pred cchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEEe-----CCCCCHHHHHHHHcC
Confidence 1233459999999988 78665 778899999999975
No 170
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.35 E-value=3.5e-06 Score=73.12 Aligned_cols=126 Identities=17% Similarity=0.259 Sum_probs=92.5
Q ss_pred ccccccccCCCCchhhhhhhccCcccccccccCCCCCcEEcCCCChhhHHhc-CCCcEEEEEEcCCChhhhchHHHHHHH
Q 029575 43 SSKNQLLFGSRTNLSLKSYNNSLPKLAIRVRCGASSGITEITESEFPNTVLK-SERPVLVEFVANWCGPCRLVAPAVEWL 121 (191)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~k~vlv~F~a~wC~~C~~~~p~l~~l 121 (191)
.....+|.|-.....+..|...+-... +. -..|+.+... .+.+ .++.-+..|.++.|++|......++++
T Consensus 72 ~~~~i~f~g~P~g~Ef~s~i~~i~~~~-----~~---~~~l~~~~~~-~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~ 142 (515)
T TIGR03140 72 ADTGIRFAGIPGGHEFTSLVLAILQVG-----GH---GPKLDEGIID-RIRRLNGPLHFETYVSLTCQNCPDVVQALNQM 142 (515)
T ss_pred cccceEEEecCCcHHHHHHHHHHHHhc-----CC---CCCCCHHHHH-HHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHH
Confidence 345677888887777776665432222 22 2344333333 2332 245668999999999999999999999
Q ss_pred HHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEEeeeeecCCCCHHHHHHHHHHH
Q 029575 122 AQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTL 184 (191)
Q Consensus 122 ~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~ 184 (191)
+...++ |..-.+|..+.++++.+|++.++|++++ +|+.. +.|..+.+++.+.+.+.
T Consensus 143 a~~~p~-i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~----~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 143 ALLNPN-ISHTMIDGALFQDEVEALGIQGVPAVFL--NGEEF----HNGRMDLAELLEKLEET 198 (515)
T ss_pred HHhCCC-ceEEEEEchhCHHHHHhcCCcccCEEEE--CCcEE----EecCCCHHHHHHHHhhc
Confidence 998775 8888899999999999999999999976 55543 57888888887777654
No 171
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=98.30 E-value=4.2e-06 Score=62.13 Aligned_cols=39 Identities=21% Similarity=0.430 Sum_probs=34.0
Q ss_pred CCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEE
Q 029575 96 ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKI 134 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v 134 (191)
.++.|+.|+...|++|+.+.+.+.++.+++++++.+..+
T Consensus 15 ~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~ 53 (178)
T cd03019 15 GKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKV 53 (178)
T ss_pred CCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEc
Confidence 789999999999999999999999999988776665543
No 172
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=98.30 E-value=9.9e-06 Score=55.98 Aligned_cols=99 Identities=14% Similarity=0.168 Sum_probs=71.8
Q ss_pred EcCCCChhhHHhcCCCcEEEEEEc---CCChhhhchHHHHHHHHHHhC-CCeEEEEEECCCCHHHHHHcCCCc----ccE
Q 029575 82 EITESEFPNTVLKSERPVLVEFVA---NWCGPCRLVAPAVEWLAQEYG-DRLTVVKIDHDANPQLIEEYKVYG----LPT 153 (191)
Q Consensus 82 ~l~~~~~~~~~~~~~k~vlv~F~a---~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~~~~~~~~v~~----~Pt 153 (191)
++|.++..... . .+..++++-. ..-..-......+.++++.++ +++.|+.+|.++.....+.||+.. +|.
T Consensus 3 ~~~~en~~~~~-~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~ 80 (111)
T cd03073 3 HRTKDNRAQFT-K-KPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPV 80 (111)
T ss_pred eeccchHHHhc-c-CCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCE
Confidence 55666666553 1 3334443322 233444667889999999999 689999999998877899999984 999
Q ss_pred EEEEE-CCeEEeeeeecCCC-CHHHHHHHHHHHh
Q 029575 154 LILFK-NGQEVPESRREGAI-TKLKLKEYIDTLL 185 (191)
Q Consensus 154 ~~~~~-~g~~~~~~~~~g~~-~~~~l~~~i~~~l 185 (191)
+.++. ++++. ...+.. +.+.|.+|+++++
T Consensus 81 ~~i~~~~~~KY---~~~~~~~t~e~i~~F~~~f~ 111 (111)
T cd03073 81 VAIRTAKGKKY---VMEEEFSDVDALEEFLEDFF 111 (111)
T ss_pred EEEEeCCCCcc---CCCcccCCHHHHHHHHHHhC
Confidence 99987 34333 456777 9999999998763
No 173
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.29 E-value=7.2e-06 Score=53.06 Aligned_cols=58 Identities=21% Similarity=0.370 Sum_probs=44.0
Q ss_pred EEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCH-----HHHHHcCCCcccEEEEEECCeEE
Q 029575 100 LVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANP-----QLIEEYKVYGLPTLILFKNGQEV 163 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-----~~~~~~~v~~~Pt~~~~~~g~~~ 163 (191)
++.|+++||++|+.+...|+++.. ...++.++.+.+. .+.+..+...+|.++ .+|+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~--~~g~~i 64 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNVF--IGGKFI 64 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEE--ECCEEE
Confidence 578999999999999999988754 3667788877552 355667889999973 466554
No 174
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.29 E-value=6.6e-05 Score=52.66 Aligned_cols=98 Identities=18% Similarity=0.359 Sum_probs=74.8
Q ss_pred hhhHHh-cCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEE-ECCeEEee
Q 029575 88 FPNTVL-KSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILF-KNGQEVPE 165 (191)
Q Consensus 88 ~~~~~~-~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~-~~g~~~~~ 165 (191)
.++.+. +.+++++|-|..+|-+.|.++...|.+++++.++-..++.||.++-+++.+.|.+. -|..++| -+++.+.-
T Consensus 11 VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnkhm~v 89 (133)
T PF02966_consen 11 VDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNKHMMV 89 (133)
T ss_dssp HHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTEEEEE
T ss_pred HHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEecCeEEEE
Confidence 444444 44899999999999999999999999999999887889999999999999999999 7776555 48887642
Q ss_pred eeecCCC--------CHHHHHHHHHHHhh
Q 029575 166 SRREGAI--------TKLKLKEYIDTLLD 186 (191)
Q Consensus 166 ~~~~g~~--------~~~~l~~~i~~~l~ 186 (191)
....|.. +++++.+.++.+-.
T Consensus 90 D~GtgnnnKin~~~~~kqe~iDiie~iyr 118 (133)
T PF02966_consen 90 DFGTGNNNKINWAFEDKQEFIDIIETIYR 118 (133)
T ss_dssp ESSSSSSSSBCS--SCHHHHHHHHHHHHH
T ss_pred EecCCCccEEEEEcCcHHHHHHHHHHHHH
Confidence 3333332 56788888776543
No 175
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.24 E-value=8.1e-06 Score=51.80 Aligned_cols=67 Identities=21% Similarity=0.360 Sum_probs=47.7
Q ss_pred EEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHc---CCCcccEEEEEECCeEEeeeeecCCCCHHH
Q 029575 100 LVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEY---KVYGLPTLILFKNGQEVPESRREGAITKLK 176 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~---~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~~ 176 (191)
+..|..++|++|++.+..|++. ++.|-.+|++++++....+ +...+|.+++ +|+.. .+..+++.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~~~-----~~G~~~~~ 67 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEH------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGDLS-----WSGFRPDK 67 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCCcE-----EeccCHHH
Confidence 3578899999999999888642 3778888888877665554 7889999854 45322 33357776
Q ss_pred HHH
Q 029575 177 LKE 179 (191)
Q Consensus 177 l~~ 179 (191)
|.+
T Consensus 68 ~~~ 70 (72)
T TIGR02194 68 LKA 70 (72)
T ss_pred HHh
Confidence 655
No 176
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.23 E-value=9.1e-06 Score=49.59 Aligned_cols=55 Identities=16% Similarity=0.287 Sum_probs=41.7
Q ss_pred EEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHH----HHcCCCcccEEEEEECCeE
Q 029575 100 LVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLI----EEYKVYGLPTLILFKNGQE 162 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~----~~~~v~~~Pt~~~~~~g~~ 162 (191)
++.|+.+||++|++....|++. ++.+-.+|++.+++.. +..+...+|++++ +|+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEE
Confidence 5789999999999999777433 2778888888775433 3349999999976 6654
No 177
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.21 E-value=1.7e-05 Score=51.26 Aligned_cols=60 Identities=13% Similarity=0.194 Sum_probs=44.0
Q ss_pred CCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCC---HHHHHHcCCCcccEEEEEECCeEE
Q 029575 96 ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDAN---PQLIEEYKVYGLPTLILFKNGQEV 163 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~---~~~~~~~~v~~~Pt~~~~~~g~~~ 163 (191)
.+.-++.|+.+||++|++.+..|++. ++.+-.+|++++ .++....+...+|.+++ +|+.+
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~i 68 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKLI 68 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEEE
Confidence 44557789999999999999888643 266667777765 34555568899999954 67655
No 178
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=98.18 E-value=7.9e-06 Score=62.64 Aligned_cols=40 Identities=15% Similarity=0.370 Sum_probs=33.3
Q ss_pred CCcEEEEEEcCCChhhhchHHHH---HHHHHHhCCCeEEEEEE
Q 029575 96 ERPVLVEFVANWCGPCRLVAPAV---EWLAQEYGDRLTVVKID 135 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd 135 (191)
+++.||.|+.-.|++|..+.+.+ +.+.+.+++++.++.+.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~ 79 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYH 79 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEec
Confidence 56779999999999999999876 88888888776666554
No 179
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.16 E-value=2.9e-05 Score=51.86 Aligned_cols=94 Identities=22% Similarity=0.258 Sum_probs=69.6
Q ss_pred EEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECC
Q 029575 81 TEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNG 160 (191)
Q Consensus 81 ~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g 160 (191)
.+|+..+....+...++.++|-|+..+|. .....|.+++..+.+.+.|+.+. +.++++++++.. |++++|+..
T Consensus 2 ~~i~s~~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~~-~~i~l~~~~ 74 (97)
T cd02981 2 KELTSKEELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVKP-GSVVLFKPF 74 (97)
T ss_pred eecCCHHHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCCC-CceEEeCCc
Confidence 34555444444555689999999999988 45678899999997778887765 456778888765 899999753
Q ss_pred -eEEeeeeecCCCCHHHHHHHHHH
Q 029575 161 -QEVPESRREGAITKLKLKEYIDT 183 (191)
Q Consensus 161 -~~~~~~~~~g~~~~~~l~~~i~~ 183 (191)
... ..+.|..+.+.|.+||..
T Consensus 75 ~~~~--~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 75 EEEP--VEYDGEFTEESLVEFIKD 96 (97)
T ss_pred ccCC--ccCCCCCCHHHHHHHHHh
Confidence 222 368888889999999864
No 180
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.12 E-value=2.4e-05 Score=68.58 Aligned_cols=90 Identities=17% Similarity=0.240 Sum_probs=76.5
Q ss_pred CCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEE-CCeEEeeeeecCCCCH
Q 029575 96 ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFK-NGQEVPESRREGAITK 174 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~-~g~~~~~~~~~g~~~~ 174 (191)
+++.++.|+.+.|..|..+...+++++. +.+++.+...|..++.+++++|++...|++.+++ +|+. .+.+|.|-...
T Consensus 366 ~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~-~~i~f~g~P~G 443 (555)
T TIGR03143 366 NPVTLLLFLDGSNEKSAELQSFLGEFAS-LSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNY-TGLKFHGVPSG 443 (555)
T ss_pred CCEEEEEEECCCchhhHHHHHHHHHHHh-cCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcc-cceEEEecCcc
Confidence 4557888999999999999999999985 4567988888988889999999999999999996 4433 23689999999
Q ss_pred HHHHHHHHHHhhh
Q 029575 175 LKLKEYIDTLLDS 187 (191)
Q Consensus 175 ~~l~~~i~~~l~~ 187 (191)
.+|..||..+++.
T Consensus 444 ~Ef~s~i~~i~~~ 456 (555)
T TIGR03143 444 HELNSFILALYNA 456 (555)
T ss_pred HhHHHHHHHHHHh
Confidence 9999999998763
No 181
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.12 E-value=6.2e-05 Score=48.96 Aligned_cols=72 Identities=17% Similarity=0.200 Sum_probs=52.7
Q ss_pred EEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHH---HHcCCCcccEEEEEECCeEEeeeeecCCCCHHH
Q 029575 100 LVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLI---EEYKVYGLPTLILFKNGQEVPESRREGAITKLK 176 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~---~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~~ 176 (191)
+..|..+||++|...+..|.+ .++.|-.+|++++++.. ...+...+|++++ ++..+ .| ...+.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~~~-----~G-f~~~~ 68 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDLSW-----SG-FRPDM 68 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCEEE-----ec-CCHHH
Confidence 678999999999999977754 23888888998877643 3346788999955 44322 34 48888
Q ss_pred HHHHHHHHh
Q 029575 177 LKEYIDTLL 185 (191)
Q Consensus 177 l~~~i~~~l 185 (191)
|.+++...+
T Consensus 69 l~~~~~~~~ 77 (81)
T PRK10329 69 INRLHPAPH 77 (81)
T ss_pred HHHHHHhhh
Confidence 888887654
No 182
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.11 E-value=8.6e-06 Score=53.00 Aligned_cols=80 Identities=20% Similarity=0.348 Sum_probs=60.0
Q ss_pred EEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEEeeeeecCCCCHHHHHH
Q 029575 100 LVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKE 179 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~ 179 (191)
++.|..+.|+-|..+...+.++....+ +.+-.||+++++++..+|+. .+|.+.+-+.++........+..+.+++.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~--~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~ 78 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP--FELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLRA 78 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST--CEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC--ceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHHH
Confidence 678999999999999999888765544 89999999999999999995 799976522111110124577889999999
Q ss_pred HHH
Q 029575 180 YID 182 (191)
Q Consensus 180 ~i~ 182 (191)
+|+
T Consensus 79 ~L~ 81 (81)
T PF05768_consen 79 WLE 81 (81)
T ss_dssp HHH
T ss_pred HhC
Confidence 885
No 183
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=4.4e-05 Score=60.91 Aligned_cols=110 Identities=20% Similarity=0.430 Sum_probs=83.1
Q ss_pred CCCCCcEEcCCCChhhHHhcCCC--cEEEEEEcC----CChhhhchHHHHHHHHHHhC------C--CeEEEEEECCCCH
Q 029575 75 GASSGITEITESEFPNTVLKSER--PVLVEFVAN----WCGPCRLVAPAVEWLAQEYG------D--RLTVVKIDHDANP 140 (191)
Q Consensus 75 ~~~~~v~~l~~~~~~~~~~~~~k--~vlv~F~a~----wC~~C~~~~p~l~~l~~~~~------~--~v~~~~vd~d~~~ 140 (191)
..++.|..++++.|...+....+ ..+++|.|. .|.-|+.+..++.-++..+. + ++-|..||.|+.+
T Consensus 37 ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p 116 (331)
T KOG2603|consen 37 TSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESP 116 (331)
T ss_pred cCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccH
Confidence 34556999999999988875533 467777765 69999999999999988762 2 5899999999999
Q ss_pred HHHHHcCCCcccEEEEEEC--CeEEeee----eecCCCCHHHHHHHHHHHh
Q 029575 141 QLIEEYKVYGLPTLILFKN--GQEVPES----RREGAITKLKLKEYIDTLL 185 (191)
Q Consensus 141 ~~~~~~~v~~~Pt~~~~~~--g~~~~~~----~~~g~~~~~~l~~~i~~~l 185 (191)
++.+.+++...|++++|.+ |.+.... ...|. ..|++.+|+++.-
T Consensus 117 ~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~-~Ae~iaqfv~~~t 166 (331)
T KOG2603|consen 117 QVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGF-EAEQIAQFVADRT 166 (331)
T ss_pred HHHHHhcccCCCeEEEeCCCccccccCccchhhhcch-hHHHHHHHHHHhh
Confidence 9999999999999999953 2221101 12333 3788888888764
No 184
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.05 E-value=2.7e-05 Score=48.48 Aligned_cols=56 Identities=23% Similarity=0.308 Sum_probs=41.9
Q ss_pred EEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHH----HHHcCCCcccEEEEEECCeEE
Q 029575 100 LVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQL----IEEYKVYGLPTLILFKNGQEV 163 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~----~~~~~v~~~Pt~~~~~~g~~~ 163 (191)
++.|+++||++|+.+...|.+.. +.+..+|++.+.+. .+..+...+|+++ .+|+.+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~--~~~~~i 61 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQIF--INGEFI 61 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEE
Confidence 57899999999999998887663 66778888876643 3345777889874 367665
No 185
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.01 E-value=9e-05 Score=46.81 Aligned_cols=66 Identities=17% Similarity=0.249 Sum_probs=45.6
Q ss_pred EEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHH---HHHHcCCCcccEEEEEECCeEEeeeeecCCCCHHH
Q 029575 100 LVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQ---LIEEYKVYGLPTLILFKNGQEVPESRREGAITKLK 176 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~---~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~~ 176 (191)
++.|..+||++|.+.+..|++. ++.+..+|++.+.. +....+...+|.++ .+|+.+ | ..++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~if--i~g~~i------g--g~~~ 66 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTGAMTVPQVF--IDGELI------G--GSDD 66 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhCCCCcCeEE--ECCEEE------e--CHHH
Confidence 6789999999999998777642 36677777776542 33445888999984 366554 1 3566
Q ss_pred HHHHH
Q 029575 177 LKEYI 181 (191)
Q Consensus 177 l~~~i 181 (191)
+.+++
T Consensus 67 l~~~l 71 (72)
T cd03029 67 LEKYF 71 (72)
T ss_pred HHHHh
Confidence 66654
No 186
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.98 E-value=7.6e-05 Score=47.37 Aligned_cols=56 Identities=16% Similarity=0.267 Sum_probs=40.9
Q ss_pred EEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHH----HcCCC-cccEEEEEECCeEE
Q 029575 100 LVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIE----EYKVY-GLPTLILFKNGQEV 163 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~----~~~v~-~~Pt~~~~~~g~~~ 163 (191)
++.|+.+||++|.+....|++. ++.+-.+|++.+++..+ .++.. .+|++++ +|+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i--~g~~i 62 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI--GDVHI 62 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE--CCEEE
Confidence 5689999999999999888653 36777788877655443 35666 8998843 67655
No 187
>PHA03050 glutaredoxin; Provisional
Probab=97.95 E-value=2.8e-05 Score=53.42 Aligned_cols=59 Identities=14% Similarity=0.180 Sum_probs=40.7
Q ss_pred EEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCC---CH----HHHHHcCCCcccEEEEEECCeEE
Q 029575 100 LVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDA---NP----QLIEEYKVYGLPTLILFKNGQEV 163 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~---~~----~~~~~~~v~~~Pt~~~~~~g~~~ 163 (191)
++.|..+|||+|++....|++..-.++ .|-.+|+++ .. ++.+..|-..+|++++ +|+.+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~i 80 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTSI 80 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEEE
Confidence 778999999999999988877643322 244445543 22 3555568889999954 67665
No 188
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.92 E-value=5.9e-05 Score=48.53 Aligned_cols=56 Identities=16% Similarity=0.329 Sum_probs=40.4
Q ss_pred EEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHH----HcCCCcccEEEEEECCeEE
Q 029575 100 LVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIE----EYKVYGLPTLILFKNGQEV 163 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~----~~~v~~~Pt~~~~~~g~~~ 163 (191)
++.|+.+||++|.+....|++. ++.+-.+|++.+++..+ ..+...+|++++ +|+.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i--~g~~i 60 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI--GDVHV 60 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 4678999999999999888753 25666677776654443 347889999844 66554
No 189
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.85 E-value=7.4e-05 Score=50.52 Aligned_cols=56 Identities=23% Similarity=0.316 Sum_probs=37.8
Q ss_pred EEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHH-------HHHHcCCCcccEEEEEECCeEE
Q 029575 100 LVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQ-------LIEEYKVYGLPTLILFKNGQEV 163 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~-------~~~~~~v~~~Pt~~~~~~g~~~ 163 (191)
++.|..+|||+|++....|.+. + +.+-.+|+|.+++ +.+..+...+|.++ -+|+.+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~----~--i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vf--i~g~~i 72 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL----G--VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVF--VGGKLV 72 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc----C--CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEE--ECCEEE
Confidence 6779999999999999877655 2 4444555554432 33334678999984 367665
No 190
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=97.84 E-value=0.00019 Score=48.75 Aligned_cols=91 Identities=25% Similarity=0.290 Sum_probs=60.8
Q ss_pred CChhhHHhcC-CCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCH----HHHHHcCCCc-ccEEEEEEC
Q 029575 86 SEFPNTVLKS-ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANP----QLIEEYKVYG-LPTLILFKN 159 (191)
Q Consensus 86 ~~~~~~~~~~-~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~----~~~~~~~v~~-~Pt~~~~~~ 159 (191)
++++..+.+. +++++|+=.++.|+-.......|++.....++++.++.+|+-++. .++.+|||+. -|-++++++
T Consensus 8 eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili~~ 87 (105)
T PF11009_consen 8 EQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILIKN 87 (105)
T ss_dssp HHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEEET
T ss_pred HHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEEEC
Confidence 3444444433 677777778999999999999999999998877999999987765 5788999974 699999999
Q ss_pred CeEEeeeeecCCCCHHHH
Q 029575 160 GQEVPESRREGAITKLKL 177 (191)
Q Consensus 160 g~~~~~~~~~g~~~~~~l 177 (191)
|+.+. .......+.+.|
T Consensus 88 g~~v~-~aSH~~It~~~l 104 (105)
T PF11009_consen 88 GKVVW-HASHWDITAEAL 104 (105)
T ss_dssp TEEEE-EEEGGG-SHHHH
T ss_pred CEEEE-ECccccCCHHhc
Confidence 99984 233444555554
No 191
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.84 E-value=0.00012 Score=49.92 Aligned_cols=90 Identities=17% Similarity=0.239 Sum_probs=65.8
Q ss_pred cEEcCCCChhhHHhcCCCcEEEEEEcCC---ChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEE
Q 029575 80 ITEITESEFPNTVLKSERPVLVEFVANW---CGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLIL 156 (191)
Q Consensus 80 v~~l~~~~~~~~~~~~~k~vlv~F~a~w---C~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~ 156 (191)
...++.++++..+.. +...++ |++.. |+.|....-.+-++.+.+++.+....++-+...++..+|++..+|++++
T Consensus 11 ~~~vd~~~ld~~l~~-~~~~vl-f~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLvf 88 (107)
T PF07449_consen 11 WPRVDADTLDAFLAA-PGDAVL-FFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALVF 88 (107)
T ss_dssp EEEE-CCCHHHHHHC-CSCEEE-EESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEEE
T ss_pred CeeechhhHHHHHhC-CCcEEE-EECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEEE
Confidence 678888889887765 444444 55544 4555555568889999998888777777666788999999999999999
Q ss_pred EECCeEEeeeeecCCCC
Q 029575 157 FKNGQEVPESRREGAIT 173 (191)
Q Consensus 157 ~~~g~~~~~~~~~g~~~ 173 (191)
+++|+.+ ....|-++
T Consensus 89 ~R~g~~l--G~i~gi~d 103 (107)
T PF07449_consen 89 FRDGRYL--GAIEGIRD 103 (107)
T ss_dssp EETTEEE--EEEESSST
T ss_pred EECCEEE--EEecCeec
Confidence 9999988 45555543
No 192
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.00016 Score=46.89 Aligned_cols=56 Identities=14% Similarity=0.334 Sum_probs=40.2
Q ss_pred EEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCH-----HHHHHc-CCCcccEEEEEECCeEE
Q 029575 100 LVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANP-----QLIEEY-KVYGLPTLILFKNGQEV 163 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-----~~~~~~-~v~~~Pt~~~~~~g~~~ 163 (191)
++.|..+|||+|++....|.+. ++.|..++++.+. +..++. +.+.+|.+++ +|+.+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~~i 64 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGKHV 64 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCEEE
Confidence 6779999999999999777722 3667777766554 334444 7899999966 66554
No 193
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.81 E-value=0.00017 Score=45.65 Aligned_cols=56 Identities=23% Similarity=0.280 Sum_probs=42.1
Q ss_pred EEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHH----HHHHcCCCcccEEEEEECCeEE
Q 029575 100 LVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQ----LIEEYKVYGLPTLILFKNGQEV 163 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~----~~~~~~v~~~Pt~~~~~~g~~~ 163 (191)
++.|+.+||++|++....|++. ++.+-.+|++++++ +.+..+-..+|.+++ +|+.+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~~i 62 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK------GLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEKLV 62 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 5679999999999999877752 36777888887664 444557788999854 66655
No 194
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.79 E-value=0.00011 Score=48.38 Aligned_cols=58 Identities=28% Similarity=0.398 Sum_probs=44.6
Q ss_pred EEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECC--CC------------------------------HHHHHHcC
Q 029575 100 LVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHD--AN------------------------------PQLIEEYK 147 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d--~~------------------------------~~~~~~~~ 147 (191)
++.|+...|++|..+.+.++++.....+++.+....+. .. ...++++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 46799999999999999999998666666666655432 11 23556789
Q ss_pred CCcccEEEEE
Q 029575 148 VYGLPTLILF 157 (191)
Q Consensus 148 v~~~Pt~~~~ 157 (191)
+.++|++++.
T Consensus 81 ~~g~Pt~v~~ 90 (98)
T cd02972 81 VTGTPTFVVN 90 (98)
T ss_pred CCCCCEEEEC
Confidence 9999999874
No 195
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.75 E-value=0.00017 Score=54.18 Aligned_cols=103 Identities=20% Similarity=0.324 Sum_probs=78.6
Q ss_pred CCCCcEEcCCCChhhHHhcC--CCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccE
Q 029575 76 ASSGITEITESEFPNTVLKS--ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPT 153 (191)
Q Consensus 76 ~~~~v~~l~~~~~~~~~~~~--~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt 153 (191)
.-+.|..|++.+|-..+... +-.|||..|...-+-|..+...|+.++.+|+. ++|+++-.... ...|-=...||
T Consensus 89 kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~-iKFVki~at~c---IpNYPe~nlPT 164 (240)
T KOG3170|consen 89 KFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ-IKFVKIPATTC---IPNYPESNLPT 164 (240)
T ss_pred cccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc-ceEEecccccc---cCCCcccCCCe
Confidence 33459999999998887754 55788999999999999999999999999998 99998865543 22355577899
Q ss_pred EEEEECCeEEeeeeecC-------CCCHHHHHHHHHHH
Q 029575 154 LILFKNGQEVPESRREG-------AITKLKLKEYIDTL 184 (191)
Q Consensus 154 ~~~~~~g~~~~~~~~~g-------~~~~~~l~~~i~~~ 184 (191)
+++|..|.... .+.| ..+.+++..++-+.
T Consensus 165 l~VY~~G~lk~--q~igll~lgG~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 165 LLVYHHGALKK--QMIGLLELGGMNLTMEDVEDFLVQA 200 (240)
T ss_pred EEEeecchHHh--heehhhhhcCCcCCHHHHHHHHHhc
Confidence 99999887652 2332 24667777776543
No 196
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.69 E-value=0.0023 Score=44.46 Aligned_cols=101 Identities=28% Similarity=0.429 Sum_probs=70.6
Q ss_pred cEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHH-HHh--CCCeEEEEEECC-----CCHHHHHHcCC--C
Q 029575 80 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLA-QEY--GDRLTVVKIDHD-----ANPQLIEEYKV--Y 149 (191)
Q Consensus 80 v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~-~~~--~~~v~~~~vd~d-----~~~~~~~~~~v--~ 149 (191)
...|+.-+|+..+.+ .+.++|-|=... |--.-+..|.+++ +.. .+++.+..|-+. +|.+++++|+| .
T Consensus 6 ~v~LD~~tFdKvi~k-f~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke 82 (126)
T PF07912_consen 6 CVPLDELTFDKVIPK-FKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKE 82 (126)
T ss_dssp SEEESTTHHHHHGGG-SSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCC
T ss_pred eeeccceehhheecc-CceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcc
Confidence 678999999977766 699999995432 2223456788888 433 235888888764 57899999999 6
Q ss_pred cccEEEEEECCeEEeeeee--cCCCCHHHHHHHHHHH
Q 029575 150 GLPTLILFKNGQEVPESRR--EGAITKLKLKEYIDTL 184 (191)
Q Consensus 150 ~~Pt~~~~~~g~~~~~~~~--~g~~~~~~l~~~i~~~ 184 (191)
.+|.+++|..|..-. ..+ .|..+.+.|..|+.+.
T Consensus 83 ~fPv~~LF~~~~~~p-v~~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 83 DFPVIYLFVGDKEEP-VRYPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp C-SEEEEEESSTTSE-EEE-TCS-S-HHHHHHHHHHT
T ss_pred cCCEEEEecCCCCCC-ccCCccCCccHHHHHHHHHhC
Confidence 799999998333322 355 8889999999999875
No 197
>PRK10638 glutaredoxin 3; Provisional
Probab=97.43 E-value=0.001 Score=43.22 Aligned_cols=56 Identities=13% Similarity=0.248 Sum_probs=40.4
Q ss_pred EEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHH----HHHcCCCcccEEEEEECCeEE
Q 029575 100 LVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQL----IEEYKVYGLPTLILFKNGQEV 163 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~----~~~~~v~~~Pt~~~~~~g~~~ 163 (191)
++.|..+||++|++....|++. ++.+..+|++.+++. .+..+...+|++++ +|+.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~~i 63 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQHI 63 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 5678899999999999777753 266667788766543 44457788998844 66555
No 198
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=97.42 E-value=0.00047 Score=50.40 Aligned_cols=70 Identities=16% Similarity=0.257 Sum_probs=42.1
Q ss_pred hccCcccccccccCCCCCcEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhch-HHHHHHHHHHhCC-Ce-EEEEEECC
Q 029575 62 NNSLPKLAIRVRCGASSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLV-APAVEWLAQEYGD-RL-TVVKIDHD 137 (191)
Q Consensus 62 ~~~~p~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~-~p~l~~l~~~~~~-~v-~~~~vd~d 137 (191)
|+.+|.|.+....+... ..++..+ +..+++.+|+.|...||+.|... .+.|.+...++.+ ++ .++.|..|
T Consensus 2 G~~aPdF~l~~~~~~~g--~~v~L~~----~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D 74 (155)
T cd03013 2 GDKLPNVTLFEYVPGPP--NPVNLSE----LFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVN 74 (155)
T ss_pred CCcCCCeEeeeeccCCC--ceeeHHH----HhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECC
Confidence 56788888644321111 1122111 12323445555568999999999 9999999888854 35 47777644
No 199
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=97.39 E-value=0.00035 Score=52.22 Aligned_cols=33 Identities=30% Similarity=0.548 Sum_probs=25.9
Q ss_pred EEEcCCChhhhchHHHHHHHHHHhCCCeEEEEE
Q 029575 102 EFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKI 134 (191)
Q Consensus 102 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v 134 (191)
+|..|.|+.|-...|.+.++..+++.++.+-.|
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i 34 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFI 34 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEE
Confidence 689999999999999999999999987655444
No 200
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.38 E-value=0.0011 Score=44.59 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=36.2
Q ss_pred CCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHH----HHcCCCcccEEEEEECCeEE
Q 029575 106 NWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLI----EEYKVYGLPTLILFKNGQEV 163 (191)
Q Consensus 106 ~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~----~~~~v~~~Pt~~~~~~g~~~ 163 (191)
+||++|++....|.+.. +.|..+|+++++++. +..+-..+|.+++ +|+.+
T Consensus 25 ~~Cp~C~~ak~lL~~~~------i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi--~g~~i 78 (97)
T TIGR00365 25 PQCGFSARAVQILKACG------VPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV--KGEFV 78 (97)
T ss_pred CCCchHHHHHHHHHHcC------CCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE--CCEEE
Confidence 89999999998877642 567778887766443 4456778999854 67655
No 201
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.33 E-value=0.0011 Score=43.94 Aligned_cols=50 Identities=24% Similarity=0.288 Sum_probs=35.7
Q ss_pred CCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHH----HHcCCCcccEEEEEECCeEE
Q 029575 106 NWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLI----EEYKVYGLPTLILFKNGQEV 163 (191)
Q Consensus 106 ~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~----~~~~v~~~Pt~~~~~~g~~~ 163 (191)
+||++|++....|++.. +.|-.+|++.++++. +..+-..+|.+++ +|+.+
T Consensus 21 ~~Cp~C~~ak~~L~~~~------i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi--~g~~i 74 (90)
T cd03028 21 PRCGFSRKVVQILNQLG------VDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV--NGELV 74 (90)
T ss_pred CCCcHHHHHHHHHHHcC------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE--CCEEE
Confidence 69999999998777653 567777777666543 3457788999843 67655
No 202
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.19 E-value=0.0016 Score=49.48 Aligned_cols=84 Identities=21% Similarity=0.380 Sum_probs=69.7
Q ss_pred CcEEcC-CCChhhHHhcCCC--cEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEE
Q 029575 79 GITEIT-ESEFPNTVLKSER--PVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLI 155 (191)
Q Consensus 79 ~v~~l~-~~~~~~~~~~~~k--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~ 155 (191)
.|.+++ ++.|...+.+.-+ .++|.+|-+.-.-|..+...+.-|+.+|+. ++|++|-... -....+|...++|+++
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~-vKFckikss~-~gas~~F~~n~lP~Ll 216 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI-VKFCKIKSSN-TGASDRFSLNVLPTLL 216 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc-eeEEEeeecc-ccchhhhcccCCceEE
Confidence 478885 5777777755433 568889999999999999999999999997 9999997654 4578899999999999
Q ss_pred EEECCeEEe
Q 029575 156 LFKNGQEVP 164 (191)
Q Consensus 156 ~~~~g~~~~ 164 (191)
+|++|..+.
T Consensus 217 iYkgGeLIg 225 (273)
T KOG3171|consen 217 IYKGGELIG 225 (273)
T ss_pred EeeCCchhH
Confidence 999998763
No 203
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0026 Score=43.33 Aligned_cols=58 Identities=19% Similarity=0.329 Sum_probs=40.8
Q ss_pred EEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCH-HHHH----HcCCCcccEEEEEECCeEE
Q 029575 100 LVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANP-QLIE----EYKVYGLPTLILFKNGQEV 163 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-~~~~----~~~v~~~Pt~~~~~~g~~~ 163 (191)
+|.|..+||++|+.+...|.+ ++....++.+|-+.+. ++-+ .-+-+.+|.+++ +|+.+
T Consensus 16 VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~i 78 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKFI 78 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEEE
Confidence 667999999999998776666 4545778888776543 3332 234568999866 67665
No 204
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.12 E-value=0.005 Score=47.79 Aligned_cols=55 Identities=16% Similarity=0.318 Sum_probs=43.2
Q ss_pred cEEcCCCChhh--HHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEE
Q 029575 80 ITEITESEFPN--TVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKI 134 (191)
Q Consensus 80 v~~l~~~~~~~--~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v 134 (191)
|..++++.... ...+++++.||+|.+-.||+=+.-...++++.++|.+.+.|+.|
T Consensus 84 vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~V 140 (237)
T PF00837_consen 84 VVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIV 140 (237)
T ss_pred eEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehh
Confidence 77887776221 23356899999999999999999999999999999885445444
No 205
>PRK10824 glutaredoxin-4; Provisional
Probab=97.11 E-value=0.0022 Score=44.51 Aligned_cols=50 Identities=20% Similarity=0.207 Sum_probs=34.3
Q ss_pred CCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHH----HcCCCcccEEEEEECCeEE
Q 029575 106 NWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIE----EYKVYGLPTLILFKNGQEV 163 (191)
Q Consensus 106 ~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~----~~~v~~~Pt~~~~~~g~~~ 163 (191)
+|||+|++....|.++. +.+..+|++.++++.. .-+-..+|.+++ +|+.+
T Consensus 28 p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI--~G~~I 81 (115)
T PRK10824 28 PSCGFSAQAVQALSACG------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV--DGELV 81 (115)
T ss_pred CCCchHHHHHHHHHHcC------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 59999999998887763 3444556666554433 346678999865 77666
No 206
>PTZ00062 glutaredoxin; Provisional
Probab=97.03 E-value=0.0041 Score=47.55 Aligned_cols=51 Identities=20% Similarity=0.230 Sum_probs=36.1
Q ss_pred cCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHH----cCCCcccEEEEEECCeEE
Q 029575 105 ANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEE----YKVYGLPTLILFKNGQEV 163 (191)
Q Consensus 105 a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~----~~v~~~Pt~~~~~~g~~~ 163 (191)
.+||++|+++...|++. ++.+..+|++++.++.+. .+-..+|.+++ +|+.+
T Consensus 125 ~p~C~~C~~~k~~L~~~------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI--~G~~I 179 (204)
T PTZ00062 125 FPFCRFSNAVVNMLNSS------GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV--NGELI 179 (204)
T ss_pred CCCChhHHHHHHHHHHc------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 37999999998777754 366778888877654433 35567888865 67665
No 207
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0039 Score=48.72 Aligned_cols=37 Identities=38% Similarity=0.479 Sum_probs=28.5
Q ss_pred HHHHcCCCcccEEEEEECCeEEeeeeecCCCCHHHHHHHHHHHh
Q 029575 142 LIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLL 185 (191)
Q Consensus 142 ~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~l 185 (191)
++++++|.++|++++ +|+. +.|..+.++|.+.|++.+
T Consensus 207 ~a~~~gv~gTPt~~v--~~~~-----~~g~~~~~~l~~~i~~~~ 243 (244)
T COG1651 207 LAQQLGVNGTPTFIV--NGKL-----VPGLPDLDELKAIIDEAL 243 (244)
T ss_pred HHHhcCCCcCCeEEE--CCee-----ecCCCCHHHHHHHHHHhh
Confidence 556789999999977 4543 477888999999888754
No 208
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=96.97 E-value=0.0038 Score=52.83 Aligned_cols=56 Identities=13% Similarity=0.231 Sum_probs=41.0
Q ss_pred EEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHH---HH---------cCCCcccEEEEEECCeEE
Q 029575 100 LVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLI---EE---------YKVYGLPTLILFKNGQEV 163 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~---~~---------~~v~~~Pt~~~~~~g~~~ 163 (191)
|+.|..+|||+|++....|.+. ++.|-.+|+++++... ++ .|...+|++++ +|+.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~i 71 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHI 71 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEEE
Confidence 7789999999999998777664 3777788888766322 22 36788999965 56554
No 209
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.95 E-value=0.013 Score=43.33 Aligned_cols=68 Identities=22% Similarity=0.275 Sum_probs=54.2
Q ss_pred chHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEEeeeeecCC-CCHHHHHHHHHHHh
Q 029575 113 LVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGA-ITKLKLKEYIDTLL 185 (191)
Q Consensus 113 ~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~-~~~~~l~~~i~~~l 185 (191)
.....|.++++.+.+++.|+.+. +.++++++++.. |++++|+++.... ..+.|. .+.+.|.+||....
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~-~~y~~~~~~~~~l~~fI~~~~ 75 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKP-VVYDGDKFTPEELKKFIKKNS 75 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSE-EEESSSTTSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCc-eecccccCCHHHHHHHHHHhc
Confidence 34567899999998779999887 577999999999 9999998632211 377887 89999999998863
No 210
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=96.60 E-value=0.031 Score=37.30 Aligned_cols=76 Identities=17% Similarity=0.191 Sum_probs=55.2
Q ss_pred CCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEEeeeeecCCCCHH
Q 029575 96 ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKL 175 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~ 175 (191)
+.+.++.|.... ..|..+...+++++... +++.+...+.+. ..|++.+.++|+.. +.++.|-....
T Consensus 19 ~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS-dkI~~~~~~~~~-----------~~P~~~i~~~~~~~-gIrF~GiP~Gh 84 (94)
T cd02974 19 NPVELVASLDDS-EKSAELLELLEEIASLS-DKITLEEDNDDE-----------RKPSFSINRPGEDT-GIRFAGIPMGH 84 (94)
T ss_pred CCEEEEEEeCCC-cchHHHHHHHHHHHHhC-CceEEEEecCCC-----------CCCEEEEecCCCcc-cEEEEecCCch
Confidence 455566666655 99999999999988765 446664433321 46999998777442 36999999999
Q ss_pred HHHHHHHHHh
Q 029575 176 KLKEYIDTLL 185 (191)
Q Consensus 176 ~l~~~i~~~l 185 (191)
++..+|..++
T Consensus 85 Ef~Slilai~ 94 (94)
T cd02974 85 EFTSLVLALL 94 (94)
T ss_pred hHHHHHHHhC
Confidence 9999998753
No 211
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.56 E-value=0.041 Score=37.28 Aligned_cols=96 Identities=17% Similarity=0.245 Sum_probs=62.6
Q ss_pred EEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECC
Q 029575 81 TEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNG 160 (191)
Q Consensus 81 ~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g 160 (191)
.++++.+-...+...++.++|-|+..--. .....+.+++..+.+++.|+... +.++...+++ .|++++|++.
T Consensus 3 ~~i~s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~~~ivl~~p~ 74 (104)
T cd03069 3 VELRTEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY--GEGVVLFRPP 74 (104)
T ss_pred cccCCHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--CCceEEEech
Confidence 44544332233344578888888866443 35667888999987778885443 3467788888 6888888431
Q ss_pred e-----EEeeeeecCCCCHHHHHHHHHHH
Q 029575 161 Q-----EVPESRREGAITKLKLKEYIDTL 184 (191)
Q Consensus 161 ~-----~~~~~~~~g~~~~~~l~~~i~~~ 184 (191)
. ...+..+.|..+.+.|.+||...
T Consensus 75 ~~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 75 RLSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred hhhcccCcccccccCcCCHHHHHHHHHhh
Confidence 1 01113578888899999999764
No 212
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.0049 Score=45.14 Aligned_cols=69 Identities=19% Similarity=0.296 Sum_probs=46.2
Q ss_pred hhhhccCcccccccccCCCCCcEEcCCCChhhHHhcCCCcEEEEEE-cCCChhhhchHHHHHHHHHHhCC-CeEEEEEEC
Q 029575 59 KSYNNSLPKLAIRVRCGASSGITEITESEFPNTVLKSERPVLVEFV-ANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDH 136 (191)
Q Consensus 59 ~~~~~~~p~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~ 136 (191)
.+.++.+|++++...++.+-.+..++. ++++|++|| +..-|-|.+..--|++-++++.. ...++.+..
T Consensus 63 v~~Gd~iPD~tL~dedg~sisLkkit~----------nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~ 132 (211)
T KOG0855|consen 63 VNKGDAIPDFTLKDEDGKSISLKKITG----------NKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSG 132 (211)
T ss_pred eecCCcCCCcccccCCCCeeeeeeecC----------CCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeecc
Confidence 467889999999888886655555543 568888888 44566677666556555555543 355666665
Q ss_pred C
Q 029575 137 D 137 (191)
Q Consensus 137 d 137 (191)
|
T Consensus 133 D 133 (211)
T KOG0855|consen 133 D 133 (211)
T ss_pred C
Confidence 4
No 213
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.54 E-value=0.045 Score=36.90 Aligned_cols=96 Identities=8% Similarity=0.105 Sum_probs=64.1
Q ss_pred cEEcCCCChhhHHhc-CCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEE
Q 029575 80 ITEITESEFPNTVLK-SERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFK 158 (191)
Q Consensus 80 v~~l~~~~~~~~~~~-~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~ 158 (191)
+..|+..+-...+.+ .+..++|-|+..--. .....|.+++..+.+++.|+.. .+.++...+++. .|.+++++
T Consensus 2 v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~---~~~~~~~~~~~~-~~~i~l~~ 74 (102)
T cd03066 2 VEIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFAT---FDSKVAKKLGLK-MNEVDFYE 74 (102)
T ss_pred ceEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEE---CcHHHHHHcCCC-CCcEEEeC
Confidence 456655443334444 577888888866444 3456788899998776877543 234667788775 68898886
Q ss_pred C-CeEEeeeee-cCCCCHHHHHHHHHHH
Q 029575 159 N-GQEVPESRR-EGAITKLKLKEYIDTL 184 (191)
Q Consensus 159 ~-g~~~~~~~~-~g~~~~~~l~~~i~~~ 184 (191)
+ +... ..+ .|..+.+.|.+||...
T Consensus 75 ~~~e~~--~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 75 PFMEEP--VTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CCCCCC--cccCCCCCCHHHHHHHHHHh
Confidence 4 3222 346 6788999999999764
No 214
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.019 Score=50.76 Aligned_cols=79 Identities=20% Similarity=0.415 Sum_probs=58.8
Q ss_pred CCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHH---HHHHHHhCCCeEEEEEECCCCHHHHHHcC--------CCccc
Q 029575 84 TESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAV---EWLAQEYGDRLTVVKIDHDANPQLIEEYK--------VYGLP 152 (191)
Q Consensus 84 ~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~~~~~~~--------v~~~P 152 (191)
..+.|.. ..+.+|+++|-+-.+||..|+.|...- .++++-+.....-++||-++-|++.+.|. --++|
T Consensus 32 ~~eAf~~-A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWP 110 (667)
T COG1331 32 GEEAFAK-AKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWP 110 (667)
T ss_pred CHHHHHH-HHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCc
Confidence 3455554 444589999999999999999998654 55666666668888999888777666553 45899
Q ss_pred EEEEEE-CCeEE
Q 029575 153 TLILFK-NGQEV 163 (191)
Q Consensus 153 t~~~~~-~g~~~ 163 (191)
-.+|+. +|+..
T Consensus 111 LtVfLTPd~kPF 122 (667)
T COG1331 111 LTVFLTPDGKPF 122 (667)
T ss_pred eeEEECCCCcee
Confidence 999997 55554
No 215
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.072 Score=40.14 Aligned_cols=118 Identities=16% Similarity=0.176 Sum_probs=74.1
Q ss_pred hhhccCcccccccccCCCCCcEEcCCCChhhHHhcCCCcEEEEEE-cCCChhhhchHHHHHHHHHHhCC-CeEEEEEECC
Q 029575 60 SYNNSLPKLAIRVRCGASSGITEITESEFPNTVLKSERPVLVEFV-ANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHD 137 (191)
Q Consensus 60 ~~~~~~p~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d 137 (191)
..++.+|+|+..... ......+++..++. +|.+++.|| ++.-+-|-.....+.+.+.++.+ ++.++.+.+|
T Consensus 4 lIg~~aP~F~~~a~~-~~~~~~~i~l~d~~------gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~D 76 (194)
T COG0450 4 LIGKKAPDFTANAVL-GGEIFEEITLSDYY------GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTD 76 (194)
T ss_pred ccCCcCCCcEEEEEe-cCceeeEEechhhc------CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecC
Confidence 456788888865542 11123444444443 577777777 56778888888888888888855 4777777654
Q ss_pred ----------------------------CCHHHHHHcCCCc------ccEEEEEECCeEEeee-ee--cCCCCHHHHHHH
Q 029575 138 ----------------------------ANPQLIEEYKVYG------LPTLILFKNGQEVPES-RR--EGAITKLKLKEY 180 (191)
Q Consensus 138 ----------------------------~~~~~~~~~~v~~------~Pt~~~~~~g~~~~~~-~~--~g~~~~~~l~~~ 180 (191)
.+.++++.|++.. +=.+++++..+.+... .+ .=.++.+++...
T Consensus 77 s~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~ 156 (194)
T COG0450 77 SVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRV 156 (194)
T ss_pred cHHHHHHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHH
Confidence 3456888888763 4456677754444211 11 113578888888
Q ss_pred HHHH
Q 029575 181 IDTL 184 (191)
Q Consensus 181 i~~~ 184 (191)
|+.+
T Consensus 157 idAl 160 (194)
T COG0450 157 IDAL 160 (194)
T ss_pred HHHH
Confidence 8765
No 216
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.17 E-value=0.065 Score=36.04 Aligned_cols=97 Identities=18% Similarity=0.235 Sum_probs=66.9
Q ss_pred EcCC-CChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCC--CHHHHHHcCCC----cccEE
Q 029575 82 EITE-SEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDA--NPQLIEEYKVY----GLPTL 154 (191)
Q Consensus 82 ~l~~-~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~--~~~~~~~~~v~----~~Pt~ 154 (191)
.|++ .+|..++ .....|+|.|..+--..- ..+..+.++++...+.-.++.|||.. ...+|+++.|. .-|..
T Consensus 5 ~i~d~KdfKKLL-RTr~NVLvLy~ks~k~a~-~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~ 82 (112)
T cd03067 5 DISDHKDFKKLL-RTRNNVLVLYSKSAKSAE-ALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVE 82 (112)
T ss_pred cccchHHHHHHH-hhcCcEEEEEecchhhHH-HHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcch
Confidence 4443 5566444 446777777776553333 34458889999998888999999986 56799999998 55644
Q ss_pred EE-EECCeEEeeeeecCCCCHHHHHHHHH
Q 029575 155 IL-FKNGQEVPESRREGAITKLKLKEYID 182 (191)
Q Consensus 155 ~~-~~~g~~~~~~~~~g~~~~~~l~~~i~ 182 (191)
+. |++|... ..|.-..+...|..|+.
T Consensus 83 LkHYKdG~fH--kdYdR~~t~kSmv~Flr 109 (112)
T cd03067 83 LKHYKDGDFH--TEYNRQLTFKSMVAFLR 109 (112)
T ss_pred hhcccCCCcc--ccccchhhHHHHHHHhh
Confidence 33 3577665 36677778888887775
No 217
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=95.99 E-value=0.11 Score=38.62 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=28.7
Q ss_pred EEEEEEcCCChhhhchHHHHHHHHHHhCC-CeEEEEE
Q 029575 99 VLVEFVANWCGPCRLVAPAVEWLAQEYGD-RLTVVKI 134 (191)
Q Consensus 99 vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~v 134 (191)
.|..|+..-||+|-...+.+.++.+.+.+ ++.+.-+
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~ 37 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPF 37 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecc
Confidence 36789999999999999999999999944 3444433
No 218
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=95.80 E-value=0.26 Score=33.52 Aligned_cols=105 Identities=16% Similarity=0.206 Sum_probs=74.1
Q ss_pred cEEcCCCChhhHHhcC-CCcEEEEEEcCCChhhhchHHHHHHHHHHhCC--CeEEEEEECCCCHHHHH----HcCCC-cc
Q 029575 80 ITEITESEFPNTVLKS-ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGD--RLTVVKIDHDANPQLIE----EYKVY-GL 151 (191)
Q Consensus 80 v~~l~~~~~~~~~~~~-~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~~~----~~~v~-~~ 151 (191)
+..++.+++...-... +...++.|-..--+.-.++.+.++++++++.+ ++.|+.||-|+-+-+.. .|+|. .-
T Consensus 3 lrkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~ 82 (120)
T cd03074 3 LRKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFR 82 (120)
T ss_pred hhhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCC
Confidence 3455555555444332 57788889999999999999999999999865 49999999998876554 45553 24
Q ss_pred cEEEEEE--CCeEEeeeeec---CCCCHHHHHHHHHHHh
Q 029575 152 PTLILFK--NGQEVPESRRE---GAITKLKLKEYIDTLL 185 (191)
Q Consensus 152 Pt~~~~~--~g~~~~~~~~~---g~~~~~~l~~~i~~~l 185 (191)
|.+=+++ +..-+- .... ...+.++|..||+..|
T Consensus 83 PqIGVV~vtdadSvW-~~m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 83 PQIGVVNVTDADSVW-MEMDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred CceeeEeccccccee-EecccccccCcHHHHHHHHHhhC
Confidence 8888886 222221 1222 3368899999998764
No 219
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=95.80 E-value=0.24 Score=38.01 Aligned_cols=90 Identities=18% Similarity=0.368 Sum_probs=59.8
Q ss_pred CCcEEEEEEcCCCh-hhhchHHHHHHHHHHhC-C---C--eEEEEEECCCC-H--------------------------H
Q 029575 96 ERPVLVEFVANWCG-PCRLVAPAVEWLAQEYG-D---R--LTVVKIDHDAN-P--------------------------Q 141 (191)
Q Consensus 96 ~k~vlv~F~a~wC~-~C~~~~p~l~~l~~~~~-~---~--v~~~~vd~d~~-~--------------------------~ 141 (191)
+++++|.|.-+.|+ -|-.+...+.++.++.. . + +.|+.||-+.+ + +
T Consensus 67 Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~ltg~~~~~~~ 146 (207)
T COG1999 67 GKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIGLTGTPEQIEE 146 (207)
T ss_pred CCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeeeeeCCHHHHHH
Confidence 89999999888885 69999998988888876 2 3 45555553221 1 3
Q ss_pred HHHHcCCC---------------cccEEEEEE-CCeEEeeeeecCCCCHHHHHHHHHHHhhh
Q 029575 142 LIEEYKVY---------------GLPTLILFK-NGQEVPESRREGAITKLKLKEYIDTLLDS 187 (191)
Q Consensus 142 ~~~~~~v~---------------~~Pt~~~~~-~g~~~~~~~~~g~~~~~~l~~~i~~~l~~ 187 (191)
+++.|+|. ....+++++ +|+.. ..+.+...++++.+.|++++++
T Consensus 147 ~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~--~~~~~~~~~~~i~~~l~~l~~~ 206 (207)
T COG1999 147 VAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFL--GTYDYGEPPEEIAADLKKLLKE 206 (207)
T ss_pred HHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEE--EEecCCCChHHHHHHHHHHhhc
Confidence 44555544 234566666 56555 3455555689999999888764
No 220
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.28 Score=35.61 Aligned_cols=103 Identities=19% Similarity=0.244 Sum_probs=69.9
Q ss_pred cEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCC-eEEEEEECCCC--------HH---HHH-Hc
Q 029575 80 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDR-LTVVKIDHDAN--------PQ---LIE-EY 146 (191)
Q Consensus 80 v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~vd~d~~--------~~---~~~-~~ 146 (191)
+..++++.+.-.-.+ +|+++|.=.|+-|+.--+. ..|+.|+++|.++ +.++..-|+.- .+ +|+ .|
T Consensus 10 ~~~~~G~~~~l~~~~-GkVlLIVNtASkCGfTpQY-egLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~Y 87 (162)
T COG0386 10 VKDIDGEPVSLSDYK-GKVLLIVNTASKCGFTPQY-EGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNY 87 (162)
T ss_pred eeccCCCCccHHHhC-CcEEEEEEcccccCCcHhH-HHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhcc
Confidence 566777666544444 8999999999999998754 4788899999774 77777766421 11 111 12
Q ss_pred C-----------------------------------CCcccEEEEEE-CCeEEeeeeecCCCCHHHHHHHHHHHhh
Q 029575 147 K-----------------------------------VYGLPTLILFK-NGQEVPESRREGAITKLKLKEYIDTLLD 186 (191)
Q Consensus 147 ~-----------------------------------v~~~Pt~~~~~-~g~~~~~~~~~g~~~~~~l~~~i~~~l~ 186 (191)
+ |+.==+-++++ +|+.+ .++.....++++...|+++|+
T Consensus 88 gVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV--~Rf~p~t~P~d~~~~Ie~lL~ 161 (162)
T COG0386 88 GVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVV--KRFSPKTKPEDIELAIEKLLA 161 (162)
T ss_pred CceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEE--EeeCCCCChhhHHHHHHHHhc
Confidence 1 22222344555 77777 578888899999999998876
No 221
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=95.68 E-value=0.071 Score=38.64 Aligned_cols=56 Identities=18% Similarity=0.294 Sum_probs=39.5
Q ss_pred EEEEEcC------CChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHH----HHcCC----CcccEEEEEECCeEE
Q 029575 100 LVEFVAN------WCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLI----EEYKV----YGLPTLILFKNGQEV 163 (191)
Q Consensus 100 lv~F~a~------wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~----~~~~v----~~~Pt~~~~~~g~~~ 163 (191)
|+.|+++ +|++|+.++..|+.+ +|.|-.+|++.+.++. +.++- ..+|.+++ +|+.+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~I 71 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGRYL 71 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCEEE
Confidence 4556666 999999998777764 2778889998776543 33444 67888865 66555
No 222
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.49 E-value=0.12 Score=45.13 Aligned_cols=78 Identities=19% Similarity=0.217 Sum_probs=57.6
Q ss_pred CCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEEeeeeecCCCCHH
Q 029575 96 ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKL 175 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~ 175 (191)
.+++-+.++.+.|..|..+...+++++... +++.+-..+.+ ...|++.+.++|+.. +.+|.|-....
T Consensus 18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~~i~~~~~~~~-----------~~~p~~~~~~~~~~~-~i~f~g~P~g~ 84 (517)
T PRK15317 18 ERPIELVASLDDSEKSAELKELLEEIASLS-DKITVEEDSLD-----------VRKPSFSITRPGEDT-GVRFAGIPMGH 84 (517)
T ss_pred CCCEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEccCC-----------CCCCEEEEEcCCccc-eEEEEecCccH
Confidence 455545555558999999999999998765 44666442211 347999998766554 36899999999
Q ss_pred HHHHHHHHHhh
Q 029575 176 KLKEYIDTLLD 186 (191)
Q Consensus 176 ~l~~~i~~~l~ 186 (191)
+|..||..+++
T Consensus 85 Ef~s~i~~i~~ 95 (517)
T PRK15317 85 EFTSLVLALLQ 95 (517)
T ss_pred HHHHHHHHHHH
Confidence 99999999876
No 223
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=95.43 E-value=0.0057 Score=49.08 Aligned_cols=87 Identities=16% Similarity=0.332 Sum_probs=68.0
Q ss_pred CCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEE-CCCCHHHHHHcCCCcccEEEEEECCeEEeeeeecCCCCH
Q 029575 96 ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKID-HDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITK 174 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd-~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~ 174 (191)
..++-+.||+.||+..+...|.+.-....|.. +....++ ...-+.+..+|++.+.|++++...--. ..+.|..+.
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~-i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~~---~~~~~~r~l 151 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS-IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTCP---ASYRGERDL 151 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccc-cccccHHHHhhcccchhccccccCCcceeeccccc---hhhcccccH
Confidence 56888999999999999999999888777763 3333332 223467888999999999988754433 378999999
Q ss_pred HHHHHHHHHHhh
Q 029575 175 LKLKEYIDTLLD 186 (191)
Q Consensus 175 ~~l~~~i~~~l~ 186 (191)
..|.++..++++
T Consensus 152 ~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 152 ASLVNFYTEITP 163 (319)
T ss_pred HHHHHHHHhhcc
Confidence 999999998875
No 224
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.10 E-value=0.19 Score=43.86 Aligned_cols=79 Identities=15% Similarity=0.267 Sum_probs=57.7
Q ss_pred CCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEEeeeeecCCCCHH
Q 029575 96 ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKL 175 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~ 175 (191)
.+++-|.++.+.|..|..+...+++++... +++.+...+.+. ...|++.+..+|+.. +.+|.|-....
T Consensus 18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~ki~~~~~~~~~----------~~~p~~~~~~~~~~~-~i~f~g~P~g~ 85 (515)
T TIGR03140 18 ENPVTLVLSAGSHEKSKELLELLDEIASLS-DKISLTQNTADT----------LRKPSFTILRDGADT-GIRFAGIPGGH 85 (515)
T ss_pred CCCEEEEEEeCCCchhHHHHHHHHHHHHhC-CCeEEEEecCCc----------CCCCeEEEecCCccc-ceEEEecCCcH
Confidence 445544444447999999999999988765 457665444322 346999888776653 36999999999
Q ss_pred HHHHHHHHHhh
Q 029575 176 KLKEYIDTLLD 186 (191)
Q Consensus 176 ~l~~~i~~~l~ 186 (191)
+|..||..+++
T Consensus 86 Ef~s~i~~i~~ 96 (515)
T TIGR03140 86 EFTSLVLAILQ 96 (515)
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 225
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=95.01 E-value=0.14 Score=40.24 Aligned_cols=89 Identities=19% Similarity=0.268 Sum_probs=56.9
Q ss_pred CCcEEEEEEcCCChh-hhchHHHHHHHHHHhCCC------eEEEEEECCCC--------------------------HHH
Q 029575 96 ERPVLVEFVANWCGP-CRLVAPAVEWLAQEYGDR------LTVVKIDHDAN--------------------------PQL 142 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~~~------v~~~~vd~d~~--------------------------~~~ 142 (191)
+|.++++|--+.||. |-.....+-++..+...+ -.|+.||-+.+ ..+
T Consensus 139 Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~v 218 (280)
T KOG2792|consen 139 GKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQV 218 (280)
T ss_pred cceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHHH
Confidence 899999999999975 777776666665555332 25677764321 236
Q ss_pred HHHcCCCccc-------------E--EEEEE-CCeEEeeeeecC-CCCHHHHHHHHHHHhhh
Q 029575 143 IEEYKVYGLP-------------T--LILFK-NGQEVPESRREG-AITKLKLKEYIDTLLDS 187 (191)
Q Consensus 143 ~~~~~v~~~P-------------t--~~~~~-~g~~~~~~~~~g-~~~~~~l~~~i~~~l~~ 187 (191)
|++|.|.--+ + +++++ +|+.+ .+.| ..+.+++.+.|.+.+.+
T Consensus 219 ak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fv---d~~GrN~~~~~~~~~I~~~v~~ 277 (280)
T KOG2792|consen 219 AKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFV---DYYGRNYDADELADSILKHVAS 277 (280)
T ss_pred HHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCccee---hhhcccCCHHHHHHHHHHHHHh
Confidence 6677654221 2 33445 56665 4444 56889999988887654
No 226
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=94.78 E-value=0.24 Score=36.78 Aligned_cols=57 Identities=25% Similarity=0.286 Sum_probs=38.7
Q ss_pred EEcCCCChhhHHhcCCCcEEEEEEcCCC-hhhhchHHHHHHHHHHhC---CCeEEEEEECCC
Q 029575 81 TEITESEFPNTVLKSERPVLVEFVANWC-GPCRLVAPAVEWLAQEYG---DRLTVVKIDHDA 138 (191)
Q Consensus 81 ~~l~~~~~~~~~~~~~k~vlv~F~a~wC-~~C~~~~p~l~~l~~~~~---~~v~~~~vd~d~ 138 (191)
..-+++.+...-.. +|+++|.|.-+.| ..|-.+...+.++.+++. .++.++.|.+|-
T Consensus 38 ~d~~G~~~~~~~~~-Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP 98 (174)
T PF02630_consen 38 TDQDGKTVTLDDLK-GKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDP 98 (174)
T ss_dssp EETTSSEEEGGGGT-TSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESST
T ss_pred EcCCCCEecHHHhC-CCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCC
Confidence 34444444433222 8999999999999 679988888888877663 357777777763
No 227
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=94.62 E-value=0.19 Score=31.79 Aligned_cols=60 Identities=27% Similarity=0.257 Sum_probs=49.8
Q ss_pred EEEEEEcCCChhhhchHHHHHHHHHHhC-CCeEEEEEECCCCHHHHHHcCCCcccEEEEEE
Q 029575 99 VLVEFVANWCGPCRLVAPAVEWLAQEYG-DRLTVVKIDHDANPQLIEEYKVYGLPTLILFK 158 (191)
Q Consensus 99 vlv~F~a~wC~~C~~~~p~l~~l~~~~~-~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~ 158 (191)
.+..|-+..-+..+.....++++.+++. +.+.+=-||+.++++++..++|-.+||++-..
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~~ 63 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKVL 63 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhcC
Confidence 4566777777888888889999888774 45888889999999999999999999986543
No 228
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=94.57 E-value=0.4 Score=40.36 Aligned_cols=89 Identities=13% Similarity=0.227 Sum_probs=61.3
Q ss_pred CCCcEEEEEEcCCChhhhchH--HHHHHHHH-HhCCCeEEEEEECC--CCHHHHHHcCCCcccEEEEEE-CCeEEeeeee
Q 029575 95 SERPVLVEFVANWCGPCRLVA--PAVEWLAQ-EYGDRLTVVKIDHD--ANPQLIEEYKVYGLPTLILFK-NGQEVPESRR 168 (191)
Q Consensus 95 ~~k~vlv~F~a~wC~~C~~~~--p~l~~l~~-~~~~~v~~~~vd~d--~~~~~~~~~~v~~~Pt~~~~~-~g~~~~~~~~ 168 (191)
.++.++|.|.+.......++. ..+...-. .....+..++|+.. ....+..-|-+..+|++++|. .|..+ +..
T Consensus 17 ~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpL--evi 94 (506)
T KOG2507|consen 17 GKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPL--EVI 94 (506)
T ss_pred cCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCcee--EEe
Confidence 367778888777766666655 22222222 22223555555543 234677888999999999996 77777 688
Q ss_pred cCCCCHHHHHHHHHHHh
Q 029575 169 EGAITKLKLKEYIDTLL 185 (191)
Q Consensus 169 ~g~~~~~~l~~~i~~~l 185 (191)
.|..+.++|...|++.+
T Consensus 95 tg~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 95 TGFVTADELASSIEKVW 111 (506)
T ss_pred eccccHHHHHHHHHHHH
Confidence 99999999999998864
No 229
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.55 E-value=0.42 Score=37.03 Aligned_cols=40 Identities=25% Similarity=0.414 Sum_probs=31.9
Q ss_pred HHHHcCCCcccEEEEEECCeEEeeeeecCCCCHHHHHHHHHHHhhh
Q 029575 142 LIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLLDS 187 (191)
Q Consensus 142 ~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~l~~ 187 (191)
.+++++|+++|+++| +|+. ...|..+.+.+...|.+++..
T Consensus 176 ~A~e~gI~gVP~fv~--d~~~----~V~Gaq~~~v~~~al~~~~~~ 215 (225)
T COG2761 176 AAQEMGIRGVPTFVF--DGKY----AVSGAQPYDVLEDALRQLLAE 215 (225)
T ss_pred HHHHCCCccCceEEE--cCcE----eecCCCCHHHHHHHHHHHHhc
Confidence 445669999999988 3333 358999999999999999864
No 230
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=93.67 E-value=0.41 Score=31.36 Aligned_cols=76 Identities=22% Similarity=0.157 Sum_probs=59.0
Q ss_pred CcEEEEEEcCCChhhhchHHHHHHHHHHh-CCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEEeeeeecCCCCHH
Q 029575 97 RPVLVEFVANWCGPCRLVAPAVEWLAQEY-GDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKL 175 (191)
Q Consensus 97 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~-~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~ 175 (191)
..++=.|.+..-+..+.....+.++.+++ .+.+.+=-||+.+++++++.++|-++||++=....-. -+..|.++..
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~P~---rriiGdls~~ 79 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKILPPPV---RKIIGDLSDR 79 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcCCCCc---ceeeccccch
Confidence 45666788888899999999999987765 4457777889999999999999999999866544322 2667776543
No 231
>PRK09301 circadian clock protein KaiB; Provisional
Probab=93.58 E-value=0.41 Score=32.35 Aligned_cols=76 Identities=21% Similarity=0.175 Sum_probs=60.1
Q ss_pred CCcEEEEEEcCCChhhhchHHHHHHHHHHh-CCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEEeeeeecCCCCH
Q 029575 96 ERPVLVEFVANWCGPCRLVAPAVEWLAQEY-GDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITK 174 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~-~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~ 174 (191)
..+++=.|.+..-+..+.....+.++.+.+ .+.+.+=-||+.++++++..++|-.+||++-....-. -+..|.++.
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~P~---rriiGDlsd 81 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKILPPPV---RKIIGDLSD 81 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcCCCCc---ceeeccccc
Confidence 466777888999999999999999987765 4457777889999999999999999999866544322 266777654
No 232
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=93.40 E-value=0.73 Score=28.84 Aligned_cols=73 Identities=15% Similarity=0.251 Sum_probs=41.1
Q ss_pred EEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEE--CCeEEeeeeecCCCCHHHH
Q 029575 100 LVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFK--NGQEVPESRREGAITKLKL 177 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~--~g~~~~~~~~~g~~~~~~l 177 (191)
+..|+.++|++|++.+-.+....-. ..+..+|.....++ +.-+...+|++..-+ +|..+ .....+
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~----y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l--------~eS~~I 68 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIP----YEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQL--------VDSSVI 68 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCc----eEEEECCchhHHHH-HHhCCCccCEEEECCCCCccEE--------EcHHHH
Confidence 4567889999999998665554222 23333333222233 334556799886532 13322 345667
Q ss_pred HHHHHHHh
Q 029575 178 KEYIDTLL 185 (191)
Q Consensus 178 ~~~i~~~l 185 (191)
.++|++.+
T Consensus 69 ~~yL~~~~ 76 (77)
T cd03040 69 ISTLKTYL 76 (77)
T ss_pred HHHHHHHc
Confidence 77777665
No 233
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=93.34 E-value=1.6 Score=29.59 Aligned_cols=97 Identities=8% Similarity=0.082 Sum_probs=58.1
Q ss_pred cEEcCCCC-hhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEE
Q 029575 80 ITEITESE-FPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFK 158 (191)
Q Consensus 80 v~~l~~~~-~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~ 158 (191)
+++++..+ +...+...++.++|-|+..--. .....+.+++..+.+++.|+... +..+..++++.. |.+++|.
T Consensus 2 v~~i~s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~---~~~~~~~~~~~~-~~vvl~r 74 (107)
T cd03068 2 SKQLQTLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTF---DSEIFKSLKVSP-GQLVVFQ 74 (107)
T ss_pred ceEcCCHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEC---hHHHHHhcCCCC-CceEEEC
Confidence 34554433 3433333227778777766433 35567888999997778885443 346778888764 6677773
Q ss_pred CCeEE-----eeeeecCC-CCHHH-HHHHHHH
Q 029575 159 NGQEV-----PESRREGA-ITKLK-LKEYIDT 183 (191)
Q Consensus 159 ~g~~~-----~~~~~~g~-~~~~~-l~~~i~~ 183 (191)
+.... .+..|.|. .+.+. |.+||++
T Consensus 75 p~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 75 PEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred cHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 22111 01245666 45545 9999875
No 234
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=93.16 E-value=0.68 Score=28.50 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=31.5
Q ss_pred EEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEE
Q 029575 102 EFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEV 163 (191)
Q Consensus 102 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~ 163 (191)
.++.++|++|++.+-.+....- .+..+.++.+......+..+-..+|++.. ++|..+
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl----~~~~~~~~~~~~~~~~~~~~~~~vP~L~~-~~~~~l 59 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNI----PVEQIILQNDDEATPIRMIGAKQVPILEK-DDGSFM 59 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCC----CeEEEECCCCchHHHHHhcCCCccCEEEe-CCCeEe
Confidence 5678899999988755554421 23344444433333333444456888733 335433
No 235
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=92.75 E-value=1.3 Score=27.92 Aligned_cols=69 Identities=17% Similarity=0.170 Sum_probs=38.1
Q ss_pred EEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCC----HHHHHHcCCCcccEEEEEECCeEEeeeeecCCCCHHH
Q 029575 101 VEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDAN----PQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLK 176 (191)
Q Consensus 101 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~----~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~~ 176 (191)
..++.++|++|++.+-.+.+.. +.+-.++++.. +++.+.-....+|+++. ++|+.. ......
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~g------i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~-~~~~~~-------l~es~~ 68 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTELE------LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVD-PNTGVQ-------MFESAD 68 (77)
T ss_pred eEecCCCCchHHHHHHHHHHcC------CcEEEEECCCChHHHHHHHHhCCCCcccEEEe-CCCCeE-------EEcHHH
Confidence 4567789999999886665542 33333444432 23333334567898743 233322 124555
Q ss_pred HHHHHHH
Q 029575 177 LKEYIDT 183 (191)
Q Consensus 177 l~~~i~~ 183 (191)
|.++|++
T Consensus 69 I~~yL~~ 75 (77)
T cd03041 69 IVKYLFK 75 (77)
T ss_pred HHHHHHH
Confidence 6666654
No 236
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=92.35 E-value=1.7 Score=31.06 Aligned_cols=75 Identities=19% Similarity=0.263 Sum_probs=52.9
Q ss_pred CcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCC----cccEEEEEECCeEEeeeeecCCC
Q 029575 97 RPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVY----GLPTLILFKNGQEVPESRREGAI 172 (191)
Q Consensus 97 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~----~~Pt~~~~~~g~~~~~~~~~g~~ 172 (191)
..-++.|+++.|+=|......++. +++.+-.+..++-..+-++|+|. +-=|.++ +|..+ +|..
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~mk~------~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~Gy~v-----EGHV 91 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHMKA------NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NGYYV-----EGHV 91 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHHHh------CCcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cCEEE-----eccC
Confidence 345788999999999987755551 23666677777777788888875 3334333 66555 8888
Q ss_pred CHHHHHHHHHHH
Q 029575 173 TKLKLKEYIDTL 184 (191)
Q Consensus 173 ~~~~l~~~i~~~ 184 (191)
..+.+..++++-
T Consensus 92 Pa~aI~~ll~~~ 103 (149)
T COG3019 92 PAEAIARLLAEK 103 (149)
T ss_pred CHHHHHHHHhCC
Confidence 899888888753
No 237
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=92.34 E-value=0.17 Score=34.22 Aligned_cols=78 Identities=17% Similarity=0.112 Sum_probs=42.7
Q ss_pred EEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCC----HHHHHHcCCCcccEEEEEE-CCeEEeee--eecCCCC
Q 029575 101 VEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDAN----PQLIEEYKVYGLPTLILFK-NGQEVPES--RREGAIT 173 (191)
Q Consensus 101 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~----~~~~~~~~v~~~Pt~~~~~-~g~~~~~~--~~~g~~~ 173 (191)
..|+.++|+.|++....|++. ++.|-.+|+.++ .++.+-++-.+.+.--++. .+...... .....++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~~ls 75 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH------GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKDELS 75 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCccccCCC
Confidence 568899999999998666653 255666666443 2333333333333333343 33322100 1124567
Q ss_pred HHHHHHHHHHH
Q 029575 174 KLKLKEYIDTL 184 (191)
Q Consensus 174 ~~~l~~~i~~~ 184 (191)
.+++.++|.+.
T Consensus 76 ~~e~~~~l~~~ 86 (105)
T cd02977 76 DEEALELMAEH 86 (105)
T ss_pred HHHHHHHHHhC
Confidence 77777777653
No 238
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.27 E-value=0.37 Score=30.54 Aligned_cols=56 Identities=21% Similarity=0.395 Sum_probs=37.2
Q ss_pred EEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCC--------------CHH--HHHHcCCCcccEEEEEECCeEE
Q 029575 101 VEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDA--------------NPQ--LIEEYKVYGLPTLILFKNGQEV 163 (191)
Q Consensus 101 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~--------------~~~--~~~~~~v~~~Pt~~~~~~g~~~ 163 (191)
++|++..||.|..+...|+++.-. +=.|++.. .++ -.+..+--++|++++ .+|+.+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~------yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~~vV 76 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVD------YDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDGKVV 76 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCC------ceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCCcEE
Confidence 679999999999988877776433 33333322 122 245567779999966 567666
No 239
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=92.20 E-value=0.98 Score=27.84 Aligned_cols=58 Identities=12% Similarity=0.200 Sum_probs=37.3
Q ss_pred EEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCC-CHHHHHHcCCCcccEEEEEECCeEE
Q 029575 101 VEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDA-NPQLIEEYKVYGLPTLILFKNGQEV 163 (191)
Q Consensus 101 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~-~~~~~~~~~v~~~Pt~~~~~~g~~~ 163 (191)
+.|+..||++|++.+-.+++..- .+.++.+|... .+++.+......+|++.. ++|..+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl----~~e~~~v~~~~~~~~~~~~np~~~vP~L~~-~~g~~l 60 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI----TVELREVELKNKPAEMLAASPKGTVPVLVL-GNGTVI 60 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC----CcEEEEeCCCCCCHHHHHHCCCCCCCEEEE-CCCcEE
Confidence 45788999999998766554422 35566666543 345655556678999843 345544
No 240
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=91.96 E-value=0.34 Score=33.48 Aligned_cols=34 Identities=15% Similarity=0.141 Sum_probs=25.6
Q ss_pred EEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCH
Q 029575 101 VEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANP 140 (191)
Q Consensus 101 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~ 140 (191)
..|+.++|+.|++....|++- ++.|-.+|+.+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN------GIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCceEEEecCCCh
Confidence 468899999999998776662 3667777776654
No 241
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.42 E-value=0.75 Score=38.24 Aligned_cols=81 Identities=22% Similarity=0.311 Sum_probs=62.9
Q ss_pred CCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEEeeeeecCCCCHH
Q 029575 96 ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKL 175 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~ 175 (191)
+..-+=.|++-.|..|-.....|+-++--.++ +.-..||-...++-.+.-+|.++||+++ +|+.. ..|.++.+
T Consensus 116 g~~~FETy~SltC~nCPDVVQALN~msvlNp~-I~H~~IdGa~Fq~Evear~IMaVPtvfl--nGe~f----g~GRmtle 188 (520)
T COG3634 116 GDFHFETYFSLTCHNCPDVVQALNLMSVLNPR-IKHTAIDGALFQDEVEARNIMAVPTVFL--NGEEF----GQGRMTLE 188 (520)
T ss_pred CceeEEEEEEeeccCChHHHHHHHHHHhcCCC-ceeEEecchhhHhHHHhccceecceEEE--cchhh----cccceeHH
Confidence 66777788889999999988888777665544 8888888765555566679999999965 77654 68888999
Q ss_pred HHHHHHHH
Q 029575 176 KLKEYIDT 183 (191)
Q Consensus 176 ~l~~~i~~ 183 (191)
++.+.|..
T Consensus 189 eilaki~~ 196 (520)
T COG3634 189 EILAKIDT 196 (520)
T ss_pred HHHHHhcC
Confidence 88887764
No 242
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=90.87 E-value=0.94 Score=31.02 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=43.7
Q ss_pred cEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCC-CeEEEEEECCC
Q 029575 80 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHDA 138 (191)
Q Consensus 80 v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~ 138 (191)
+..++++.+.-...+ ++++||.=.|+-|+.-. ....|++|.++|.+ ++.++..-|+.
T Consensus 6 ~~~~~G~~v~l~~y~-Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 6 AKDIDGKPVSLSKYK-GKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp EEBTTSSEEEGGGGT-TSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred eeCCCCCEECHHHcC-CCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 345555555443333 79999999999999999 77899999999975 58888888753
No 243
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=90.69 E-value=0.4 Score=32.85 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=32.3
Q ss_pred EEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCH----HHHHHcCCCcccEEEEEE
Q 029575 101 VEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANP----QLIEEYKVYGLPTLILFK 158 (191)
Q Consensus 101 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~----~~~~~~~v~~~Pt~~~~~ 158 (191)
..|+.++|+.|++....|++- ++.|-.+|+.+++ ++.+-++..+.|..-++.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~ 57 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH------GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFN 57 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHh
Confidence 468899999999998666552 2666677765443 333333444455555554
No 244
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=90.36 E-value=1.5 Score=26.83 Aligned_cols=56 Identities=14% Similarity=0.066 Sum_probs=33.9
Q ss_pred EEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCC-HHHHHHcCCCcccEEEEEECCeE
Q 029575 101 VEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDAN-PQLIEEYKVYGLPTLILFKNGQE 162 (191)
Q Consensus 101 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~-~~~~~~~~v~~~Pt~~~~~~g~~ 162 (191)
..|+.++|++|++..-.++...-. .....+|.... +++.+......+|++. .+|..
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~----~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~ 58 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS----VEIIDVDPDNPPEDLAELNPYGTVPTLV--DRDLV 58 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc----cEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECCEE
Confidence 457889999999988666544322 34444554432 3455555566889763 45543
No 245
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=90.30 E-value=5.1 Score=28.60 Aligned_cols=91 Identities=12% Similarity=0.096 Sum_probs=60.8
Q ss_pred CCCcEEEEEEcCCC----hhhhchHHHHHHHHHHhCCCeEEEEEECCCCH------------------HHHHHcCCCccc
Q 029575 95 SERPVLVEFVANWC----GPCRLVAPAVEWLAQEYGDRLTVVKIDHDANP------------------QLIEEYKVYGLP 152 (191)
Q Consensus 95 ~~k~vlv~F~a~wC----~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~------------------~~~~~~~v~~~P 152 (191)
..|+.+|+...+.- ..|+..+- =+.+.+-+.+++.+..-|+.... ...+.++...+|
T Consensus 20 e~K~L~VYLH~~~~~~t~~Fc~~~L~-se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~fP 98 (136)
T cd02990 20 DRKLLAIYLHHDESVLSNVFCSQLLC-AESIVQYLSQNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQLP 98 (136)
T ss_pred hcceEEEEEcCCCCccHHHHHHHHhc-CHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCCCC
Confidence 37899999998865 45555431 13333334456777777876532 245567899999
Q ss_pred EEEEEE-C-CeEEeeeeecCCCCHHHHHHHHHHHhh
Q 029575 153 TLILFK-N-GQEVPESRREGAITKLKLKEYIDTLLD 186 (191)
Q Consensus 153 t~~~~~-~-g~~~~~~~~~g~~~~~~l~~~i~~~l~ 186 (191)
.+.++. . +....-.+..|..+.+++.+.|.+.++
T Consensus 99 ~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ve 134 (136)
T cd02990 99 AILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAME 134 (136)
T ss_pred eEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHHh
Confidence 999995 2 211111578999999999998887654
No 246
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=90.22 E-value=0.89 Score=35.85 Aligned_cols=57 Identities=19% Similarity=0.262 Sum_probs=39.9
Q ss_pred cCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcC-CCcccEEEEEE
Q 029575 94 KSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYK-VYGLPTLILFK 158 (191)
Q Consensus 94 ~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~-v~~~Pt~~~~~ 158 (191)
.++|+.+++..+.|||.|-...=.|-....+|++ +.+...-.+. .+ -..+|+++|..
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn-~~l~~~~S~~-------~d~~pn~Ptl~F~~ 113 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGN-FSLEYHYSDP-------YDNYPNTPTLIFNN 113 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhcCC-eeeEEeecCc-------ccCCCCCCeEEEec
Confidence 4589999999999999999988777777777876 4333322222 22 24688887764
No 247
>PHA03075 glutaredoxin-like protein; Provisional
Probab=89.59 E-value=0.57 Score=32.29 Aligned_cols=30 Identities=27% Similarity=0.547 Sum_probs=25.7
Q ss_pred CcEEEEEEcCCChhhhchHHHHHHHHHHhC
Q 029575 97 RPVLVEFVANWCGPCRLVAPAVEWLAQEYG 126 (191)
Q Consensus 97 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~ 126 (191)
|.++|.|..|-|+-|.-....+.++..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 568999999999999999988877776663
No 248
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=89.55 E-value=0.67 Score=32.81 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=23.3
Q ss_pred EEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCC
Q 029575 100 LVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDAN 139 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~ 139 (191)
+..|+.+||+.|++....|++- ++.|-.+|+.++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~------gi~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH------DIPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCcEEeeccCC
Confidence 4578899999999988655543 255666665443
No 249
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=89.41 E-value=0.59 Score=27.82 Aligned_cols=57 Identities=14% Similarity=0.039 Sum_probs=35.4
Q ss_pred EEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCH--HHHHHcCCCcccEEEEEECCeEE
Q 029575 101 VEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANP--QLIEEYKVYGLPTLILFKNGQEV 163 (191)
Q Consensus 101 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~--~~~~~~~v~~~Pt~~~~~~g~~~ 163 (191)
..|+.++|+.|++..-.++...- .+....++.+... ++.+...-..+|++.. +|..+
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~--~~~~~ 60 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGL----PYELVPVDLGEGEQEEFLALNPLGKVPVLED--GGLVL 60 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC----CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE--CCEEE
Confidence 35788999999988866665522 2445555544322 2455566778998754 45444
No 250
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=88.98 E-value=3.8 Score=30.22 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=43.6
Q ss_pred cEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCC-CeEEEEEECC
Q 029575 80 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHD 137 (191)
Q Consensus 80 v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d 137 (191)
+..++++.+.-.... +++++|.=-|+-|+.-..-...|..|.++|++ ++.++..-|.
T Consensus 19 ~~d~~G~~v~l~~yr-GkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCN 76 (171)
T KOG1651|consen 19 AKDLDGEYVSLSQYR-GKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCN 76 (171)
T ss_pred EecCCCCCccHHHhC-CeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccc
Confidence 566666666544444 88888888999999999778899999999965 4777766653
No 251
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=88.67 E-value=1.1 Score=33.98 Aligned_cols=44 Identities=23% Similarity=0.231 Sum_probs=34.9
Q ss_pred HHHHHcCCCcccEEEEEECCeEEeeeeecC--CCCHHHHHHHHHHHhh
Q 029575 141 QLIEEYKVYGLPTLILFKNGQEVPESRREG--AITKLKLKEYIDTLLD 186 (191)
Q Consensus 141 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g--~~~~~~l~~~i~~~l~ 186 (191)
.+++++++.++||+++-.+|+.. ....| ..+.+.+..++.+.+.
T Consensus 165 ~l~~rlg~~GfPTl~le~ng~~~--~l~~g~y~~~~~~~~arl~~~~~ 210 (212)
T COG3531 165 RLMQRLGAAGFPTLALERNGTMY--VLGTGAYFGSPDAWLARLAQRLA 210 (212)
T ss_pred HHHHHhccCCCCeeeeeeCCceE--eccCCcccCCcHHHHHHHHHHHh
Confidence 47789999999999999999887 45666 4567888888877653
No 252
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=88.64 E-value=1.1 Score=31.84 Aligned_cols=42 Identities=17% Similarity=0.412 Sum_probs=32.0
Q ss_pred CHHHHHHcCCCcccEEEEEECCe-----------EEeeeeecCCCCHHHHHHHHH
Q 029575 139 NPQLIEEYKVYGLPTLILFKNGQ-----------EVPESRREGAITKLKLKEYID 182 (191)
Q Consensus 139 ~~~~~~~~~v~~~Pt~~~~~~g~-----------~~~~~~~~g~~~~~~l~~~i~ 182 (191)
+|.+.++|+|+.+|++++.+++. .. ....|..+.+.-.+.+.
T Consensus 60 dP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~--d~v~Gdvsl~~ALe~ia 112 (130)
T TIGR02742 60 DPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDY--DVVYGNVSLKGALEKMA 112 (130)
T ss_pred ChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCe--eEEEecccHHHHHHHHH
Confidence 58899999999999999998764 23 35677777766665555
No 253
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=88.28 E-value=4.4 Score=25.16 Aligned_cols=71 Identities=15% Similarity=0.211 Sum_probs=48.0
Q ss_pred EEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCC-HHHHHHcCCCcccEEEEEECCeEEeeeeecCCCCHHHHHHH
Q 029575 102 EFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDAN-PQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEY 180 (191)
Q Consensus 102 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~-~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~ 180 (191)
.++.++|++|++..-.++...- .+.+..++..+. ..+.+...-..+|++. .+|..+ .+...|.++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i----~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l--------~dS~~I~~y 66 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGI----PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVL--------TDSAAIIEY 66 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTE----EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEE--------ESHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCC----eEEEeccCcccchhHHHhhcccccceEEE--ECCEEE--------eCHHHHHHH
Confidence 3678999999998855544321 356667766553 5566666677899996 567655 256777777
Q ss_pred HHHHhh
Q 029575 181 IDTLLD 186 (191)
Q Consensus 181 i~~~l~ 186 (191)
|++.-+
T Consensus 67 L~~~~~ 72 (75)
T PF13417_consen 67 LEERYP 72 (75)
T ss_dssp HHHHST
T ss_pred HHHHcC
Confidence 776543
No 254
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=87.88 E-value=1.8 Score=29.79 Aligned_cols=22 Identities=23% Similarity=0.762 Sum_probs=19.5
Q ss_pred CCHHHHHHcCCCcccEEEEEEC
Q 029575 138 ANPQLIEEYKVYGLPTLILFKN 159 (191)
Q Consensus 138 ~~~~~~~~~~v~~~Pt~~~~~~ 159 (191)
-+|.+.++|+|+.+|++++.++
T Consensus 59 IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 59 IDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred EChhHHhhCCceEcCEEEEEcC
Confidence 3588999999999999999876
No 255
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=87.83 E-value=0.76 Score=28.18 Aligned_cols=57 Identities=16% Similarity=0.177 Sum_probs=35.3
Q ss_pred EEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECC----CCHHHHHHcCCCcccEEEEEECCeE
Q 029575 101 VEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHD----ANPQLIEEYKVYGLPTLILFKNGQE 162 (191)
Q Consensus 101 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d----~~~~~~~~~~v~~~Pt~~~~~~g~~ 162 (191)
..|+.++|++|++.+-.+....-. .....++.. ..+++.+......+|++.. ++|..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~----~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~-~~~~~ 62 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGID----VPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL-DDGTV 62 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCC----ceEEEeecccCccCCHHHHhhCCCCCCCEEEe-CCCCE
Confidence 357788999999988776655322 344455542 2344555555668899954 34433
No 256
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=86.21 E-value=1.9 Score=29.58 Aligned_cols=34 Identities=12% Similarity=0.191 Sum_probs=23.8
Q ss_pred EEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCC
Q 029575 100 LVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDAN 139 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~ 139 (191)
+..|+.++|+.|++....|++. ++.+-.+|+.++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~------gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH------QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCceEEEecCCC
Confidence 3467889999999988766653 255666666543
No 257
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=85.92 E-value=5.6 Score=27.89 Aligned_cols=54 Identities=22% Similarity=0.358 Sum_probs=33.9
Q ss_pred CeEEEEEECCCCHH----------HHHHcCCCcccEEEEEECCeEEeeeeecCCCCHHHHHHHHHHHhh
Q 029575 128 RLTVVKIDHDANPQ----------LIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLLD 186 (191)
Q Consensus 128 ~v~~~~vd~d~~~~----------~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~l~ 186 (191)
++.+.+.+...++. +.+.-|...+|-+++ +|+.+ ....+.+.++|.+|+.--+.
T Consensus 40 gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dGeiv---~~G~YPt~eEl~~~~~i~~~ 103 (123)
T PF06953_consen 40 GVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DGEIV---KTGRYPTNEELAEWLGISFS 103 (123)
T ss_dssp T-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TTEEE---EESS---HHHHHHHHT--GG
T ss_pred CceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CCEEE---EecCCCCHHHHHHHhCCCcc
Confidence 48899999887653 344558899999876 88877 56667899999999865443
No 258
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=85.65 E-value=1.8 Score=32.05 Aligned_cols=30 Identities=37% Similarity=0.671 Sum_probs=26.1
Q ss_pred EEEEEcCCChhhhchHHHHHHHHHHhCCCe
Q 029575 100 LVEFVANWCGPCRLVAPAVEWLAQEYGDRL 129 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v 129 (191)
|.+|+.+.|+.|-...+.++++.++++.++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~ 32 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGGGI 32 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCCCc
Confidence 678899999999999999999999985433
No 259
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=85.43 E-value=16 Score=28.83 Aligned_cols=70 Identities=19% Similarity=0.194 Sum_probs=37.6
Q ss_pred cEEcCCCChhhHHhcCCCcEEEEEEcCC------ChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHH----cCCC
Q 029575 80 ITEITESEFPNTVLKSERPVLVEFVANW------CGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEE----YKVY 149 (191)
Q Consensus 80 v~~l~~~~~~~~~~~~~k~vlv~F~a~w------C~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~----~~v~ 149 (191)
+..|+..... .+.+-++++-|.+|.+- -..=+.+...|+++...-++++.+-.||.+.+++.+++ +||.
T Consensus 9 ~ysLS~~T~~-~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~ 87 (271)
T PF09822_consen 9 RYSLSDQTKK-VLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQ 87 (271)
T ss_pred CccCCHHHHH-HHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCC
Confidence 3445444333 22222455555555443 23333333334444443354799999999877776665 8877
Q ss_pred c
Q 029575 150 G 150 (191)
Q Consensus 150 ~ 150 (191)
.
T Consensus 88 ~ 88 (271)
T PF09822_consen 88 P 88 (271)
T ss_pred c
Confidence 6
No 260
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=85.25 E-value=13 Score=27.34 Aligned_cols=40 Identities=15% Similarity=0.339 Sum_probs=27.6
Q ss_pred HHHHHcCCCcc-cEEEEEE-CCeEEeeeeecCCCCHHHHHHHHH
Q 029575 141 QLIEEYKVYGL-PTLILFK-NGQEVPESRREGAITKLKLKEYID 182 (191)
Q Consensus 141 ~~~~~~~v~~~-Pt~~~~~-~g~~~~~~~~~g~~~~~~l~~~i~ 182 (191)
.+.+.|+...- -++++++ +|+.. +...|.++.+++.+.|.
T Consensus 114 ~~~~aW~L~~~~SaiiVlDK~G~V~--F~k~G~Ls~~Ev~qVi~ 155 (160)
T PF09695_consen 114 VVRKAWQLQEESSAIIVLDKQGKVQ--FVKEGALSPAEVQQVIA 155 (160)
T ss_pred ceeccccCCCCCceEEEEcCCccEE--EEECCCCCHHHHHHHHH
Confidence 34445555433 4566666 55555 78999999999998876
No 261
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=85.18 E-value=0.83 Score=31.01 Aligned_cols=33 Identities=9% Similarity=0.017 Sum_probs=23.1
Q ss_pred EEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCC
Q 029575 101 VEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDAN 139 (191)
Q Consensus 101 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~ 139 (191)
..|+.+||+.|++....|++- ++.|-.+|..++
T Consensus 2 ~iy~~~~C~~crka~~~L~~~------~i~~~~~di~~~ 34 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR------GVAYTFHDYRKD 34 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCCeEEEecccC
Confidence 568899999999988666543 255556665543
No 262
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=84.66 E-value=3.3 Score=30.10 Aligned_cols=70 Identities=13% Similarity=0.190 Sum_probs=47.0
Q ss_pred hhhhhhccCcccccccccCCCCCcEEcCCCChhhHHhcCCCcE-EEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEE
Q 029575 57 SLKSYNNSLPKLAIRVRCGASSGITEITESEFPNTVLKSERPV-LVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKID 135 (191)
Q Consensus 57 ~~~~~~~~~p~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~k~v-lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd 135 (191)
.+.+.|..+|+|++.... +.+++..+|. +|.. +..|=+-.-+-|-..-..|.+.+.++++ +.++.|.
T Consensus 16 ~~~~vGd~ap~ftl~~~d-----L~~v~l~~~~------gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~-~~Vl~IS 83 (158)
T COG2077 16 NEPQVGDKAPDFTLVGKD-----LNDVSLADFA------GKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN-TVVLCIS 83 (158)
T ss_pred CCCccCCcCCceEEEcCc-----ccceeccccC------CceEEEEEccCCCCchhhHHHHHHHHHHhccCC-cEEEEEe
Confidence 345778889998853332 2344444443 5544 4455566889999999999999999887 6677777
Q ss_pred CCC
Q 029575 136 HDA 138 (191)
Q Consensus 136 ~d~ 138 (191)
.|-
T Consensus 84 ~DL 86 (158)
T COG2077 84 MDL 86 (158)
T ss_pred CCC
Confidence 653
No 263
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=84.13 E-value=1.5 Score=29.80 Aligned_cols=57 Identities=21% Similarity=0.403 Sum_probs=37.3
Q ss_pred EEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCC--cccEEEEE-ECCe
Q 029575 103 FVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVY--GLPTLILF-KNGQ 161 (191)
Q Consensus 103 F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~--~~Pt~~~~-~~g~ 161 (191)
||..+|+.|......+.+.. ..+.+.|+.+......++.+.+++. ..-+.+.+ .+|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRD--RGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcC--CCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 79999999999997777762 1234777766444545556667765 34444443 5666
No 264
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=83.83 E-value=7.6 Score=23.68 Aligned_cols=56 Identities=21% Similarity=0.314 Sum_probs=35.3
Q ss_pred EEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCC----CHHHHHHcCCCcccEEEEEECCeE
Q 029575 101 VEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDA----NPQLIEEYKVYGLPTLILFKNGQE 162 (191)
Q Consensus 101 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~----~~~~~~~~~v~~~Pt~~~~~~g~~ 162 (191)
..|+.++|++|++.+-.++...- .+....++..+ .+++.+......+|++. .+|..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi----~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~~ 61 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGL----ELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV--DNGFV 61 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCC----CCEEEEecCccCCcCCHHHHhhCcCCCCCEEE--ECCEE
Confidence 46888999999987766665422 24555666432 24555555566899994 34543
No 265
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=83.80 E-value=24 Score=29.38 Aligned_cols=109 Identities=17% Similarity=0.223 Sum_probs=70.2
Q ss_pred CCCcEEcCCCChhhHHhcC-CCcEEEEEEcCCChhhhchHHHHHHHHHHhCC--CeEEEEEECCCCHHHH----HHcCCC
Q 029575 77 SSGITEITESEFPNTVLKS-ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGD--RLTVVKIDHDANPQLI----EEYKVY 149 (191)
Q Consensus 77 ~~~v~~l~~~~~~~~~~~~-~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~--~v~~~~vd~d~~~~~~----~~~~v~ 149 (191)
...++.|+.+++....... +...+|.|-...-+.-..+...++++++.+.+ ++.+++||-|+-+-+. +.|+|.
T Consensus 248 rptlrkl~~~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~Id 327 (383)
T PF01216_consen 248 RPTLRKLRPEDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFGID 327 (383)
T ss_dssp S-SEEE--GGGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHTT-
T ss_pred hhHhhhCChhhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcCcc
Confidence 3447899998877665544 67788888888999999999999999998754 4999999999887654 345654
Q ss_pred -cccEEEEEE--CCeEEeeeee---cCCCCHHHHHHHHHHHhh
Q 029575 150 -GLPTLILFK--NGQEVPESRR---EGAITKLKLKEYIDTLLD 186 (191)
Q Consensus 150 -~~Pt~~~~~--~g~~~~~~~~---~g~~~~~~l~~~i~~~l~ 186 (191)
.-|.+=+++ +..-+. ... ....+.++|..||+..|.
T Consensus 328 l~~PqIGvVnvtdadsvW-~dm~d~~d~pt~~~LedWieDVls 369 (383)
T PF01216_consen 328 LSRPQIGVVNVTDADSVW-MDMDDDDDLPTAEELEDWIEDVLS 369 (383)
T ss_dssp TTS-EEEEEETTTSEEEE-C-STTTSS---HHHHHHHHHHHHC
T ss_pred ccCCceeEEeccccccch-hccCCcccCCcHHHHHHHHHHHhc
Confidence 249999987 333331 111 223478999999999985
No 266
>PRK12559 transcriptional regulator Spx; Provisional
Probab=82.53 E-value=2.1 Score=30.27 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=21.6
Q ss_pred EEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECC
Q 029575 100 LVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHD 137 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d 137 (191)
+..|+.++|+.|++....|++- + +.|-.+|+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~----g--i~~~~~di~ 33 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN----Q--IDYTEKNIV 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc----C--CCeEEEEee
Confidence 4578899999999988555543 2 445555543
No 267
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=82.11 E-value=0.55 Score=30.49 Aligned_cols=54 Identities=31% Similarity=0.450 Sum_probs=43.6
Q ss_pred EEcCCChhhhchHHHHHHHHHHh-CCCeEEEEEECCCCHHHHHHcCCCcccEEEE
Q 029575 103 FVANWCGPCRLVAPAVEWLAQEY-GDRLTVVKIDHDANPQLIEEYKVYGLPTLIL 156 (191)
Q Consensus 103 F~a~wC~~C~~~~p~l~~l~~~~-~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~ 156 (191)
|-+..-+..+.....++.+.+.+ ++.+.+--||+.++++++..++|-.+||++-
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLik 57 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLIK 57 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHHT
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEee
Confidence 44555566777788888887775 4468899999999999999999999999853
No 268
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=81.03 E-value=24 Score=27.61 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=40.7
Q ss_pred cEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhCC----CeEEEEEECC
Q 029575 80 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGD----RLTVVKIDHD 137 (191)
Q Consensus 80 v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~----~v~~~~vd~d 137 (191)
...|.+.+.... ..++++||-+-..+|..|......|+.|..++.. +|.|+-||--
T Consensus 12 ~W~i~~~~pm~~--~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 12 PWKIGGQDPMLN--SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred CceECCchHhhh--cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 345554433221 2379999999999999999999999888876632 4899999843
No 269
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=80.70 E-value=21 Score=26.70 Aligned_cols=88 Identities=17% Similarity=0.220 Sum_probs=49.0
Q ss_pred CCcEEEEEE-cCCChhhhchHHHHHHHHHHhCC---CeEEEEEE--------------------------CCCCHHHHHH
Q 029575 96 ERPVLVEFV-ANWCGPCRLVAPAVEWLAQEYGD---RLTVVKID--------------------------HDANPQLIEE 145 (191)
Q Consensus 96 ~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~---~v~~~~vd--------------------------~d~~~~~~~~ 145 (191)
++.+++.|| .++---|-...-.+.+.+.++.+ .|..+.+| .|.+.++++.
T Consensus 33 gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPllsD~~~~Isrd 112 (196)
T KOG0852|consen 33 GKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEISRD 112 (196)
T ss_pred ccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCcCccccceeeccchhhHHh
Confidence 788888888 44544454444555555555543 34444444 2445678999
Q ss_pred cCCC----c--ccEEEEEECCeEEee----eeecCCCCHHHHHHHHHHH
Q 029575 146 YKVY----G--LPTLILFKNGQEVPE----SRREGAITKLKLKEYIDTL 184 (191)
Q Consensus 146 ~~v~----~--~Pt~~~~~~g~~~~~----~~~~g~~~~~~l~~~i~~~ 184 (191)
|||- + +=-+++++..+.+.+ ..-.| ++.++...+|+..
T Consensus 113 yGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvg-RSVdE~lRLvqAf 160 (196)
T KOG0852|consen 113 YGVLKEDEGIALRGLFIIDPDGILRQITINDLPVG-RSVDETLRLVQAF 160 (196)
T ss_pred cCceecCCCcceeeeEEEccccceEEeeecccCCC-ccHHHHHHHHHHH
Confidence 9874 3 344555554444321 11223 4777777666653
No 270
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=80.16 E-value=11 Score=24.33 Aligned_cols=59 Identities=14% Similarity=0.192 Sum_probs=36.1
Q ss_pred EEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCC-HHHHHHcCCCcccEEEEEECCeEE
Q 029575 100 LVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDAN-PQLIEEYKVYGLPTLILFKNGQEV 163 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~-~~~~~~~~v~~~Pt~~~~~~g~~~ 163 (191)
+..|+...|++|++.+-.+.... -.+.++.++.... .++.+......+|.+.. ++|..+
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~g----l~~~~~~v~~~~~~~~~~~~np~~~vPvL~~-~~g~~l 78 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKN----IPHEVININLKDKPDWFLEKNPQGKVPALEI-DEGKVV 78 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcC----CCCeEEEeCCCCCcHHHHhhCCCCCcCEEEE-CCCCEE
Confidence 45577888999998875555442 2355566665443 33555555678999864 335443
No 271
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=78.70 E-value=4 Score=30.48 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=28.3
Q ss_pred HHHHHHcCCCcccEEEEEECCeEEeeeeecCCCCHHHHHHHHH
Q 029575 140 PQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYID 182 (191)
Q Consensus 140 ~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~i~ 182 (191)
...+.++||.++|++++ +|+. ...|..+.+.+.+.|+
T Consensus 165 ~~~a~~~gv~G~Pt~vv--~g~~----~~~G~~~~~~~~~~i~ 201 (201)
T cd03024 165 EARARQLGISGVPFFVF--NGKY----AVSGAQPPEVFLQALR 201 (201)
T ss_pred HHHHHHCCCCcCCEEEE--CCeE----eecCCCCHHHHHHHhC
Confidence 45667889999999987 5543 3588889998887763
No 272
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=78.35 E-value=5.1 Score=29.99 Aligned_cols=66 Identities=18% Similarity=0.341 Sum_probs=45.2
Q ss_pred hhccCcccccccccCCCCCcEEcCCCChhhHHhcCCCcEEEEEE--cCCChhhhchHHHHHHHHHHhCC-CeEEEEEECC
Q 029575 61 YNNSLPKLAIRVRCGASSGITEITESEFPNTVLKSERPVLVEFV--ANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHD 137 (191)
Q Consensus 61 ~~~~~p~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~k~vlv~F~--a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d 137 (191)
.++.+|.|+.....| .+. |...+ +.-|.|.|. ++.-+.|......+.+++-++.. +++.+...||
T Consensus 8 lgd~~PNfea~Tt~g------~i~---fhd~~---gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d 75 (224)
T KOG0854|consen 8 LGDTVPNFEADTTVG------KIK---FHDYL---GDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVD 75 (224)
T ss_pred ccCcCCCcccccccc------cee---hhhhc---ccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehh
Confidence 456677776433322 232 33333 677888887 55789999999999999988865 5888888765
Q ss_pred C
Q 029575 138 A 138 (191)
Q Consensus 138 ~ 138 (191)
.
T Consensus 76 ~ 76 (224)
T KOG0854|consen 76 D 76 (224)
T ss_pred h
Confidence 4
No 273
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=78.08 E-value=24 Score=28.89 Aligned_cols=119 Identities=17% Similarity=0.258 Sum_probs=65.8
Q ss_pred ccccccccCCCCchhhhhhhccCcccccccccCCCCCcEEcCCCChh-hHHhcCCCcEEEEEEcCCChhhhchHHHHHHH
Q 029575 43 SSKNQLLFGSRTNLSLKSYNNSLPKLAIRVRCGASSGITEITESEFP-NTVLKSERPVLVEFVANWCGPCRLVAPAVEWL 121 (191)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~l~~~~~~-~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l 121 (191)
-.+...|.|+++.+.+.+|....... -+..|+.+... ..+.+.+++.+|+|.+..- |.++++
T Consensus 109 gd~a~dYRG~R~Kd~iieFAhR~a~a----------iI~pi~enQ~~fehlq~Rhq~ffVf~Gtge~-------PL~d~f 171 (468)
T KOG4277|consen 109 GDHAIDYRGGREKDAIIEFAHRCAAA----------IIEPINENQIEFEHLQARHQPFFVFFGTGEG-------PLFDAF 171 (468)
T ss_pred CCeeeecCCCccHHHHHHHHHhcccc----------eeeecChhHHHHHHHhhccCceEEEEeCCCC-------cHHHHH
Confidence 34556799999999998887653222 25666664443 3344557788887765442 333333
Q ss_pred HHHhCCCeEEEEEECCCCHHHHHH-cCCCcccEEEEEECCeEEeeeeecCCCCHHHHHHHHHH
Q 029575 122 AQEYGDRLTVVKIDHDANPQLIEE-YKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDT 183 (191)
Q Consensus 122 ~~~~~~~v~~~~vd~d~~~~~~~~-~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~i~~ 183 (191)
......++.+.+.-. ...+++-. -..+..|.+.+|++.... ....| ..+.|.+||.+
T Consensus 172 idAASe~~~~a~FfS-aseeVaPe~~~~kempaV~VFKDetf~--i~de~--dd~dLseWinR 229 (468)
T KOG4277|consen 172 IDAASEKFSVARFFS-ASEEVAPEENDAKEMPAVAVFKDETFE--IEDEG--DDEDLSEWINR 229 (468)
T ss_pred HHHhhhheeeeeeec-cccccCCcccchhhccceEEEccceeE--EEecC--chhHHHHHHhH
Confidence 333333333322211 11222222 245678999999876443 23333 56778888865
No 274
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=76.35 E-value=31 Score=26.37 Aligned_cols=79 Identities=16% Similarity=0.286 Sum_probs=51.2
Q ss_pred EEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCC------------------HHHHHHcCCCc--ccEEEEEEC
Q 029575 100 LVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDAN------------------PQLIEEYKVYG--LPTLILFKN 159 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~------------------~~~~~~~~v~~--~Pt~~~~~~ 159 (191)
|=+|++..|..|--....|.+++.+ + +|..+...+|.- ...++.++... +|.+++ +
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~-~-~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV--n 77 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAAR-P-DVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV--N 77 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHH-T-SSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE--T
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcC-C-CEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE--C
Confidence 3468889999999999999999998 3 577777776642 13445566554 677755 7
Q ss_pred CeEEeeeeecCCCCHHHHHHHHHHHhhh
Q 029575 160 GQEVPESRREGAITKLKLKEYIDTLLDS 187 (191)
Q Consensus 160 g~~~~~~~~~g~~~~~~l~~~i~~~l~~ 187 (191)
|... ..|. +...+...|++....
T Consensus 78 G~~~----~~g~-~~~~~~~ai~~~~~~ 100 (202)
T PF06764_consen 78 GREH----RVGS-DRAAVEAAIQAARAR 100 (202)
T ss_dssp TTEE----EETT--HHHHHHHHHHHHHT
T ss_pred Ceee----eecc-CHHHHHHHHHHhhcc
Confidence 7665 3444 788888888887654
No 275
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=76.01 E-value=5.1 Score=29.59 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=24.7
Q ss_pred HHHHHcCCCcccEEEEEECCeEEeeeeecCCCCHHHHHHHH
Q 029575 141 QLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYI 181 (191)
Q Consensus 141 ~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~i 181 (191)
+.+.++||.++|++++ +|+.+ .|....+.+.+.|
T Consensus 158 ~~a~~~gi~gvPtfvv--~g~~~-----~G~~~l~~~~~~l 191 (192)
T cd03022 158 EEAIARGVFGVPTFVV--DGEMF-----WGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHcCCCcCCeEEE--CCeee-----cccccHHHHHHHh
Confidence 4567889999999987 66543 6776777666554
No 276
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=75.04 E-value=21 Score=23.53 Aligned_cols=67 Identities=19% Similarity=0.308 Sum_probs=40.7
Q ss_pred cCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHc-CCCcccEEEEEECCeEEeeeeecCCCCHHHHHHHHHH
Q 029575 105 ANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEY-KVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDT 183 (191)
Q Consensus 105 a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~-~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~i~~ 183 (191)
..+|++|++.+=.|.+. +-...+..||....++...+. -...+|++ .++|..+ .+...+.++|++
T Consensus 19 ~g~cpf~~rvrl~L~eK----gi~ye~~~vd~~~~p~~~~~~nP~g~vPvL--~~~~~~i--------~eS~~I~eYLde 84 (91)
T cd03061 19 IGNCPFCQRLFMVLWLK----GVVFNVTTVDMKRKPEDLKDLAPGTQPPFL--LYNGEVK--------TDNNKIEEFLEE 84 (91)
T ss_pred CCCChhHHHHHHHHHHC----CCceEEEEeCCCCCCHHHHHhCCCCCCCEE--EECCEEe--------cCHHHHHHHHHH
Confidence 35899999988555443 112556777766655444444 45678955 3455444 356667777776
Q ss_pred Hh
Q 029575 184 LL 185 (191)
Q Consensus 184 ~l 185 (191)
..
T Consensus 85 ~~ 86 (91)
T cd03061 85 TL 86 (91)
T ss_pred Hc
Confidence 54
No 277
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=71.98 E-value=7.1 Score=32.20 Aligned_cols=57 Identities=21% Similarity=0.380 Sum_probs=45.9
Q ss_pred eEEEEEECCCCHHHHHHcCCCcccEEEEEE--CCeEEeeeeecCCCCHHHHHHHHHHHhhh
Q 029575 129 LTVVKIDHDANPQLIEEYKVYGLPTLILFK--NGQEVPESRREGAITKLKLKEYIDTLLDS 187 (191)
Q Consensus 129 v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~--~g~~~~~~~~~g~~~~~~l~~~i~~~l~~ 187 (191)
+..+..|..+...+..-|.+..+|.+.+++ .|+.+ .+..|...+++|.+-+++++..
T Consensus 133 wllV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v--~~ws~vi~~~~fl~~l~~Fi~~ 191 (356)
T KOG1364|consen 133 WLLVLDDTSEGQPFSAFYHISSLPHIAIIDPITGERV--KRWSGVIEPEQFLSDLNEFIDS 191 (356)
T ss_pred EEEEeeccCCCCchhhheeccCCceEEEECCchhhhh--hhhccccCHHHHHHHHHHHHhc
Confidence 556677777788899999999999999997 67777 4667888888888888888753
No 278
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=71.33 E-value=4.7 Score=28.51 Aligned_cols=32 Identities=9% Similarity=0.189 Sum_probs=21.0
Q ss_pred EEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECC
Q 029575 100 LVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHD 137 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d 137 (191)
+..|+.++|+.|++....|++- + +.|-.+|+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~----~--i~~~~~d~~ 33 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH----Q--LSYKEQNLG 33 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc----C--CCeEEEECC
Confidence 3467889999999987555432 2 455555543
No 279
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=71.13 E-value=9.9 Score=29.08 Aligned_cols=42 Identities=19% Similarity=0.384 Sum_probs=30.8
Q ss_pred CHHHHHHcCCCcccEEEEEECCeEEeeeeecCCCCHHHHHHHHHH
Q 029575 139 NPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDT 183 (191)
Q Consensus 139 ~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~i~~ 183 (191)
+|.+.++|+|+.+|++++.... .. ....|..+...-.+.+.+
T Consensus 151 DP~lF~~F~I~~VPafVv~C~~-~y--D~I~GNIsl~~ALe~iA~ 192 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFCSQ-GY--DIIRGNLRVGQALEKVAA 192 (212)
T ss_pred CHHHHHhcCCccccEEEEEcCC-CC--CEEEecccHHHHHHHHHh
Confidence 5889999999999999997543 33 366788777665555443
No 280
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=69.64 E-value=34 Score=23.59 Aligned_cols=85 Identities=20% Similarity=0.173 Sum_probs=50.7
Q ss_pred cEEEEEE-cCCChhhhchHHHHHHHHHHhCC-CeEEEEEECC-CC-----------HHHHHHcCCCcc-cEEEEE-ECCe
Q 029575 98 PVLVEFV-ANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHD-AN-----------PQLIEEYKVYGL-PTLILF-KNGQ 161 (191)
Q Consensus 98 ~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d-~~-----------~~~~~~~~v~~~-Pt~~~~-~~g~ 161 (191)
-++|.|- +..-+.-+.....|++-...+.+ ++.++.+--+ .. ..+.++|++..- -+++++ ++|+
T Consensus 11 R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG~ 90 (118)
T PF13778_consen 11 RLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDGG 90 (118)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCCc
Confidence 3344443 23445555555566554444544 4655555322 22 267888986532 344444 4777
Q ss_pred EEeeeeecCCCCHHHHHHHHHHH
Q 029575 162 EVPESRREGAITKLKLKEYIDTL 184 (191)
Q Consensus 162 ~~~~~~~~g~~~~~~l~~~i~~~ 184 (191)
.. .++....+.++|.+.|+.+
T Consensus 91 vK--~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 91 VK--LRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred EE--EecCCCCCHHHHHHHHhCC
Confidence 76 5788899999999999875
No 281
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=69.02 E-value=8.4 Score=24.66 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=21.9
Q ss_pred cccEEEEEE-CCeEEeeeeecCCCCHHHHHHHHHHHh
Q 029575 150 GLPTLILFK-NGQEVPESRREGAITKLKLKEYIDTLL 185 (191)
Q Consensus 150 ~~Pt~~~~~-~g~~~~~~~~~g~~~~~~l~~~i~~~l 185 (191)
.-|++++++ +|+.+.+ .....++.+++.++|.+.+
T Consensus 41 ~~P~L~l~d~~g~~~E~-i~i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 41 APPELVLLDEDGEEVER-INIEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp ---EEEEE-SSS--SEE-EE-SSSSHCHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCEEEE-EEcccCCHHHHHHHHHHhC
Confidence 349999998 6665543 4556679999999998754
No 282
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=67.67 E-value=31 Score=24.70 Aligned_cols=66 Identities=18% Similarity=0.274 Sum_probs=46.0
Q ss_pred CCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcc-cEEEEE-ECCeEE
Q 029575 96 ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGL-PTLILF-KNGQEV 163 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~-Pt~~~~-~~g~~~ 163 (191)
+++-.|.+|.--|+.|-.....+.+. ..+..+.|..+..+....+....++..- +-.+++ ++|+..
T Consensus 6 ~~p~~vvlyDG~C~lC~~~vrfLi~~--D~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~ 73 (137)
T COG3011 6 KKPDLVVLYDGVCPLCDGWVRFLIRR--DQGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLL 73 (137)
T ss_pred CCCCEEEEECCcchhHHHHHHHHHHh--ccCCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceE
Confidence 56778889999999999966444433 1233588998888888888888877643 445555 455554
No 283
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=65.21 E-value=47 Score=25.61 Aligned_cols=67 Identities=19% Similarity=0.268 Sum_probs=42.4
Q ss_pred CChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcC-CCcccEEEEEECCeEEeeeeecCCCCHHHHHHHHHHHh
Q 029575 107 WCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYK-VYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLL 185 (191)
Q Consensus 107 wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~-v~~~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~l 185 (191)
.|+.|+++.-.|. .+.. ...+-.||....++-.+.+. -...|-+ .| +++-+ .+.+.++++|++.+
T Consensus 20 dcpf~qr~~m~L~---~k~~-~f~vttVd~~~kp~~f~~~sp~~~~P~l-~~-d~~~~--------tDs~~Ie~~Lee~l 85 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKGV-PFKVTTVDLSRKPEWFLDISPGGKPPVL-KF-DEKWV--------TDSDKIEEFLEEKL 85 (221)
T ss_pred CChhHHHHHHHHH---HcCC-CceEEEeecCCCcHHHHhhCCCCCCCeE-Ee-CCcee--------ccHHHHHHHHHHhc
Confidence 5888888775555 2222 47888999988776665544 4445544 44 33332 46677888888776
Q ss_pred hh
Q 029575 186 DS 187 (191)
Q Consensus 186 ~~ 187 (191)
..
T Consensus 86 ~~ 87 (221)
T KOG1422|consen 86 PP 87 (221)
T ss_pred CC
Confidence 53
No 284
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=61.44 E-value=15 Score=27.05 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=17.3
Q ss_pred HHHHHcCCCcccEEEEEECCe
Q 029575 141 QLIEEYKVYGLPTLILFKNGQ 161 (191)
Q Consensus 141 ~~~~~~~v~~~Pt~~~~~~g~ 161 (191)
..+.++||.++||+++.+.+.
T Consensus 160 ~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 160 KLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHcCCCccCEEEEEeCCe
Confidence 466788999999999987654
No 285
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=59.91 E-value=8.7 Score=23.22 Aligned_cols=57 Identities=19% Similarity=0.234 Sum_probs=34.2
Q ss_pred EEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCC----CHHHHHHcCCCcccEEEEEECCeEE
Q 029575 101 VEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDA----NPQLIEEYKVYGLPTLILFKNGQEV 163 (191)
Q Consensus 101 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~----~~~~~~~~~v~~~Pt~~~~~~g~~~ 163 (191)
..|+.++|++|++.+-.++...- .+....++... .+++.+......+|++.. +|..+
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~----~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~i 62 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGI----PYEWVEVDILKGETRTPEFLALNPNGEVPVLEL--DGRVL 62 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC----CcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE--CCEEE
Confidence 35778899999988766655422 24455565432 234444444567899853 45444
No 286
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=58.85 E-value=12 Score=25.60 Aligned_cols=21 Identities=10% Similarity=0.088 Sum_probs=16.3
Q ss_pred EEEEEcCCChhhhchHHHHHH
Q 029575 100 LVEFVANWCGPCRLVAPAVEW 120 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~ 120 (191)
+..|+.+.|..|++....|++
T Consensus 2 i~iy~~p~C~~crkA~~~L~~ 22 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEA 22 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 456889999999998855544
No 287
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=55.81 E-value=26 Score=29.01 Aligned_cols=80 Identities=13% Similarity=0.136 Sum_probs=48.0
Q ss_pred CChhhhchHHHHHH----HHHHhCC-----CeEEEEEECCCCHH-HHHHcCCCc--ccEEEEEECCeEEeeeeecCCCCH
Q 029575 107 WCGPCRLVAPAVEW----LAQEYGD-----RLTVVKIDHDANPQ-LIEEYKVYG--LPTLILFKNGQEVPESRREGAITK 174 (191)
Q Consensus 107 wC~~C~~~~p~l~~----l~~~~~~-----~v~~~~vd~d~~~~-~~~~~~v~~--~Pt~~~~~~g~~~~~~~~~g~~~~ 174 (191)
.||.|-+..-.+.+ +.+.+.+ ++.+..+-++-..+ --..+||.+ -|...+|.+|+.+. +..+..-.
T Consensus 263 aCP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~--~~~~~~~~ 340 (361)
T COG0821 263 ACPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIK--KLPEEDIV 340 (361)
T ss_pred ECCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEE--ecChhhHH
Confidence 37777766544433 3333322 24444443332222 233456543 68999999999884 56777777
Q ss_pred HHHHHHHHHHhhhh
Q 029575 175 LKLKEYIDTLLDSI 188 (191)
Q Consensus 175 ~~l~~~i~~~l~~~ 188 (191)
++|.+.|+++.+..
T Consensus 341 eel~~~i~~~~~~~ 354 (361)
T COG0821 341 EELEALIEAYAEER 354 (361)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888876543
No 288
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=53.05 E-value=52 Score=20.21 Aligned_cols=57 Identities=12% Similarity=0.047 Sum_probs=34.6
Q ss_pred EEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCC----CHHHHHHcCCCcccEEEEEECCeEE
Q 029575 101 VEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDA----NPQLIEEYKVYGLPTLILFKNGQEV 163 (191)
Q Consensus 101 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~----~~~~~~~~~v~~~Pt~~~~~~g~~~ 163 (191)
..|+.+.|+.|++.+-.+++.. -.+.+..+|... .+++.+--....+|++. ++|..+
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~g----l~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~~l 62 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKG----LRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDNII 62 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcC----CCCEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCEEE
Confidence 4678889999988774444442 235566666532 23455444456789884 466544
No 289
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=51.18 E-value=13 Score=32.83 Aligned_cols=74 Identities=15% Similarity=0.282 Sum_probs=47.7
Q ss_pred CChhhHHhcCCCcEEEEEEcCCChhhhchHHHH---HHHHHHhCCCeEEEEEECCCCHHHHH--------HcCCCcccEE
Q 029575 86 SEFPNTVLKSERPVLVEFVANWCGPCRLVAPAV---EWLAQEYGDRLTVVKIDHDANPQLIE--------EYKVYGLPTL 154 (191)
Q Consensus 86 ~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~~~~--------~~~v~~~Pt~ 154 (191)
++.......++|++++-.--+.|..|..|...- ++.++...++..-++||-++-+++-+ ..+--++|.-
T Consensus 102 qeaf~kar~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GGWPms 181 (786)
T KOG2244|consen 102 QEAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGGWPMS 181 (786)
T ss_pred HHHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCCCcee
Confidence 333344555689999999889999998876432 33555555444445555555555443 3466788888
Q ss_pred EEEEC
Q 029575 155 ILFKN 159 (191)
Q Consensus 155 ~~~~~ 159 (191)
+++.+
T Consensus 182 V~LTP 186 (786)
T KOG2244|consen 182 VFLTP 186 (786)
T ss_pred EEeCC
Confidence 88753
No 290
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=50.88 E-value=67 Score=26.44 Aligned_cols=117 Identities=18% Similarity=0.186 Sum_probs=66.7
Q ss_pred cccCCCC-chhhhhhhccCcccccccccCCCCCcEEcCCCChhhHHhcCCCcEEEEEEcCCChhhhchHHHHHHHHHHhC
Q 029575 48 LLFGSRT-NLSLKSYNNSLPKLAIRVRCGASSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYG 126 (191)
Q Consensus 48 ~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~ 126 (191)
.|.|..+ ...+..+.+. .--.-|.+||-++.++...+ |.+.+|+|+.+.-....+.. -..+++++.
T Consensus 189 ~f~G~~~nf~el~~Wi~d----------KcvpLVREiTFeN~EELtEE-GlPflILf~~kdD~~s~k~F--~~aI~ReL~ 255 (375)
T KOG0912|consen 189 EFLGSMTNFDELKQWIQD----------KCVPLVREITFENAEELTEE-GLPFLILFRKKDDKESEKIF--KNAIARELD 255 (375)
T ss_pred ccccccccHHHHHHHHHh----------cchhhhhhhhhccHHHHhhc-CCceEEEEecCCcccHHHHH--HHHHHHHhh
Confidence 4666554 3444555443 22233789999999866554 89999999987654433321 234455554
Q ss_pred C---CeEEEEEECCCCHHHHHHcC----------CCcccEEEEEECCeEEeeeeecCCCCHHHHHHHHHHHh
Q 029575 127 D---RLTVVKIDHDANPQLIEEYK----------VYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLL 185 (191)
Q Consensus 127 ~---~v~~~~vd~d~~~~~~~~~~----------v~~~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~l 185 (191)
+ .+.++..|++.-..-...+| |.++=..++|.+++.+ ..+-.|.+|+..+-
T Consensus 256 ~e~~~in~l~ADG~~f~hpL~HlgKs~~DLPviaIDsF~Hmylfp~f~di--------~~pGkLkqFv~DL~ 319 (375)
T KOG0912|consen 256 DETLAINFLTADGKVFKHPLRHLGKSPDDLPVIAIDSFRHMYLFPDFNDI--------NIPGKLKQFVADLH 319 (375)
T ss_pred hhhhccceeecCcceecchHHHhCCCcccCcEEEeeccceeeecCchhhh--------cCccHHHHHHHHHh
Confidence 3 27888888775443344443 3334444444444443 23336777777653
No 291
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=49.56 E-value=95 Score=24.10 Aligned_cols=74 Identities=15% Similarity=0.262 Sum_probs=48.5
Q ss_pred EEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEEeeeeecCCCCHHHHHH
Q 029575 100 LVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKE 179 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~ 179 (191)
+=.|.-..|..|-.+...+++= .+-.+|.|+ +....+.++-+-+|-++|.+++ +|+.+ +.+..++++++.
T Consensus 13 VkI~~HktC~ssy~Lf~~L~nk--gll~~Vkii--~a~~p~f~~~~~~V~SvP~Vf~--DGel~----~~dpVdp~~ies 82 (265)
T COG5494 13 VKIFTHKTCVSSYMLFEYLENK--GLLGKVKII--DAELPPFLAFEKGVISVPSVFI--DGELV----YADPVDPEEIES 82 (265)
T ss_pred EEEEEecchHHHHHHHHHHHhc--CCCCCceEE--EcCCChHHHhhcceeecceEEE--cCeEE----EcCCCCHHHHHH
Confidence 3346677899998877655541 112235554 4555566666668999999854 77765 567778888877
Q ss_pred HHHH
Q 029575 180 YIDT 183 (191)
Q Consensus 180 ~i~~ 183 (191)
.+..
T Consensus 83 ~~~G 86 (265)
T COG5494 83 ILSG 86 (265)
T ss_pred HHcC
Confidence 7654
No 292
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=49.36 E-value=35 Score=24.96 Aligned_cols=32 Identities=13% Similarity=-0.033 Sum_probs=25.5
Q ss_pred EEEcCCChhhhchHHHHHHHHHHhCCCeEEEE
Q 029575 102 EFVANWCGPCRLVAPAVEWLAQEYGDRLTVVK 133 (191)
Q Consensus 102 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~ 133 (191)
.|+..-||.|-...+.++++..+++-.+.+.-
T Consensus 3 ~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p 34 (192)
T cd03022 3 FYFDFSSPYSYLAHERLPALAARHGATVRYRP 34 (192)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHhCCeeEEee
Confidence 46778999999999999999998864444433
No 293
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=48.58 E-value=45 Score=20.11 Aligned_cols=59 Identities=19% Similarity=0.250 Sum_probs=33.5
Q ss_pred EEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCC-CHHHHHHcCCCcccEEEEEECCeEE
Q 029575 102 EFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDA-NPQLIEEYKVYGLPTLILFKNGQEV 163 (191)
Q Consensus 102 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~-~~~~~~~~~v~~~Pt~~~~~~g~~~ 163 (191)
.|+.+.|++|.+.+-.+.... .+-.+..+.+|... .+++.+......+|.+.. .+|..+
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~--~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~~g~~l 62 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETG--LGDDVELVLVNPWSDDESLLAVNPLGKIPALVL-DDGEAL 62 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhC--CCCCcEEEEcCcccCChHHHHhCCCCCCCEEEE-CCCCEE
Confidence 467888999998775554421 11124555565332 345555545667897743 345443
No 294
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=46.97 E-value=90 Score=24.30 Aligned_cols=49 Identities=24% Similarity=0.318 Sum_probs=35.1
Q ss_pred ChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEEe
Q 029575 108 CGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVP 164 (191)
Q Consensus 108 C~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~ 164 (191)
--+|..++..++.++++++..+.++--|++- +..|. =.++-+++|+.+.
T Consensus 168 mkHsv~iMk~Lrrla~el~KtiviVlHDINf----AS~Ys----D~IVAlK~G~vv~ 216 (252)
T COG4604 168 MKHSVQIMKILRRLADELGKTIVVVLHDINF----ASCYS----DHIVALKNGKVVK 216 (252)
T ss_pred hHHHHHHHHHHHHHHHHhCCeEEEEEecccH----HHhhh----hheeeecCCEEEe
Confidence 4799999999999999998766666555442 33332 3466678888874
No 295
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=46.78 E-value=79 Score=24.92 Aligned_cols=82 Identities=17% Similarity=0.219 Sum_probs=55.9
Q ss_pred CcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCC------------------CHHHHHHcCCCcccEEEEEE
Q 029575 97 RPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDA------------------NPQLIEEYKVYGLPTLILFK 158 (191)
Q Consensus 97 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~------------------~~~~~~~~~v~~~Pt~~~~~ 158 (191)
..||=.|++..|..|-.....|.+++.+- +|.-+...+|. .....+.|+-.+++|--.+-
T Consensus 42 ~~VVELfTSQGCsSCPPAd~~l~k~a~~~--~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavv 119 (261)
T COG5429 42 LGVVELFTSQGCSSCPPADANLAKLADDP--GVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVV 119 (261)
T ss_pred ceEEEEeecCCcCCCChHHHHHHHhccCC--CEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchhee
Confidence 44566678889999999998888887642 25444444332 23466778888888877777
Q ss_pred CCeEEeeeeecCCCCHHHHHHHHHHHh
Q 029575 159 NGQEVPESRREGAITKLKLKEYIDTLL 185 (191)
Q Consensus 159 ~g~~~~~~~~~g~~~~~~l~~~i~~~l 185 (191)
+|... ..|. +..+|...|...-
T Consensus 120 nGr~~----~~Ga-d~~~i~~~i~a~~ 141 (261)
T COG5429 120 NGRVH----ANGA-DPGAIEDAIAAMA 141 (261)
T ss_pred echhh----hcCC-CHHHHHHHHHHhh
Confidence 88665 2443 7777888777653
No 296
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=45.19 E-value=87 Score=20.56 Aligned_cols=58 Identities=5% Similarity=-0.082 Sum_probs=30.2
Q ss_pred EcCCChhhhchHHHHHHHHHHhCC-CeEEEEEECCCCHHHHHHc----C----CCcccEEEEEECCeEE
Q 029575 104 VANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHDANPQLIEEY----K----VYGLPTLILFKNGQEV 163 (191)
Q Consensus 104 ~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~~~~~----~----v~~~Pt~~~~~~g~~~ 163 (191)
|.+.+.--++....=+.+..-+.. ++.|-.+|++.+++..+.+ + -..+|-+++ +++.+
T Consensus 5 Y~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi--~~~~i 71 (92)
T cd03030 5 YIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFN--GDEYC 71 (92)
T ss_pred EEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEE--CCEEe
Confidence 333333344444333333333322 4889999998777654432 2 245676643 55444
No 297
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=44.97 E-value=27 Score=24.19 Aligned_cols=22 Identities=18% Similarity=0.275 Sum_probs=17.6
Q ss_pred EEEEEcCCChhhhchHHHHHHH
Q 029575 100 LVEFVANWCGPCRLVAPAVEWL 121 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l 121 (191)
+..|+.+.|..|++....|++-
T Consensus 3 itiy~~p~C~t~rka~~~L~~~ 24 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEH 24 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 4568899999999998766654
No 298
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=42.04 E-value=67 Score=22.19 Aligned_cols=36 Identities=11% Similarity=0.148 Sum_probs=23.5
Q ss_pred HHHcCCCcccEEEEEECCeEEeeeeecCCCCHHHHHHHHHHH
Q 029575 143 IEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTL 184 (191)
Q Consensus 143 ~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~ 184 (191)
+-.|||+.+|.++| +++.+ -.|..+...-...++++
T Consensus 76 Aw~lgi~k~PAVVf--D~~~V----VYG~tDV~~A~~~~~~~ 111 (114)
T PF07511_consen 76 AWSLGITKYPAVVF--DDRYV----VYGETDVARALARIEQW 111 (114)
T ss_pred HHHhCccccCEEEE--cCCeE----EecccHHHHHHHHHHHH
Confidence 45789999999977 35444 25666666555555543
No 299
>PRK10387 glutaredoxin 2; Provisional
Probab=41.77 E-value=1.4e+02 Score=22.05 Aligned_cols=56 Identities=13% Similarity=0.188 Sum_probs=30.4
Q ss_pred EEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeE
Q 029575 102 EFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQE 162 (191)
Q Consensus 102 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~ 162 (191)
.++.+.|++|.+..-.++...- .+....++..+............+|+++. ++|..
T Consensus 3 Ly~~~~sp~~~kv~~~L~~~gi----~y~~~~~~~~~~~~~~~~~p~~~VPvL~~-~~g~~ 58 (210)
T PRK10387 3 LYIYDHCPFCVKARMIFGLKNI----PVELIVLANDDEATPIRMIGQKQVPILQK-DDGSY 58 (210)
T ss_pred EEeCCCCchHHHHHHHHHHcCC----CeEEEEcCCCchhhHHHhcCCcccceEEe-cCCeE
Confidence 3567789999998765554422 24444454433222222223457898854 35544
No 300
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=39.66 E-value=30 Score=23.50 Aligned_cols=32 Identities=13% Similarity=0.120 Sum_probs=21.5
Q ss_pred EEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCC
Q 029575 101 VEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDA 138 (191)
Q Consensus 101 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~ 138 (191)
..|+.+.|.-|++....|++- + +.|..+|.-+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~----~--i~~~~~di~~ 33 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA----G--IEPEIVEYLK 33 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC----C--CCeEEEeccc
Confidence 468899999999987555443 2 4555566543
No 301
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=38.58 E-value=32 Score=23.49 Aligned_cols=32 Identities=9% Similarity=0.003 Sum_probs=22.3
Q ss_pred EEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCC
Q 029575 101 VEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDA 138 (191)
Q Consensus 101 v~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~ 138 (191)
..|+.+.|.-|++....|++- ++.+..+|.-+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~~ 33 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK------GIEPEVVKYLK 33 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC------CCCeEEEeccC
Confidence 468899999999988666553 25555566543
No 302
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=38.15 E-value=28 Score=23.56 Aligned_cols=54 Identities=22% Similarity=0.298 Sum_probs=34.8
Q ss_pred cCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCC-CcccEEE-EEECCeEE
Q 029575 105 ANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKV-YGLPTLI-LFKNGQEV 163 (191)
Q Consensus 105 a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v-~~~Pt~~-~~~~g~~~ 163 (191)
.|-|++..+....|... +. +.|..||+=.++++.+.+.- ..+||+= +|-+|..+
T Consensus 27 ~P~CGFS~~~vqiL~~~----g~-v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfv 82 (105)
T COG0278 27 FPQCGFSAQAVQILSAC----GV-VDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFV 82 (105)
T ss_pred CCCCCccHHHHHHHHHc----CC-cceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEe
Confidence 35788888777655544 32 67889998888888876542 3455542 23477655
No 303
>COG3411 Ferredoxin [Energy production and conversion]
Probab=37.55 E-value=76 Score=19.49 Aligned_cols=29 Identities=17% Similarity=0.357 Sum_probs=23.7
Q ss_pred cEEEEEECCeEEeeeeecCCCCHHHHHHHHHHHhh
Q 029575 152 PTLILFKNGQEVPESRREGAITKLKLKEYIDTLLD 186 (191)
Q Consensus 152 Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~l~ 186 (191)
|++++|.+| + ..+..+++...+++++++.
T Consensus 18 Pvl~vYpeg--v----WY~~V~p~~a~rIv~~hl~ 46 (64)
T COG3411 18 PVLVVYPEG--V----WYTRVDPEDARRIVQSHLL 46 (64)
T ss_pred CEEEEecCC--e----eEeccCHHHHHHHHHHHHh
Confidence 999999888 2 3456799999999999875
No 304
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=36.52 E-value=61 Score=24.44 Aligned_cols=38 Identities=13% Similarity=0.278 Sum_probs=22.6
Q ss_pred HHHHcCCCcccEEEEEECCeEEeeeeecCCCCHHHHHHHH
Q 029575 142 LIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYI 181 (191)
Q Consensus 142 ~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~i 181 (191)
.+.+.||.++|++++=++++.- ..+-|.---+.+.++|
T Consensus 171 ~A~~~Gv~GVP~fvv~~~~~~~--e~fwG~Drl~~~~~~l 208 (209)
T cd03021 171 EALKYGAFGLPWIVVTNDKGKT--EMFFGSDRFEQVADFL 208 (209)
T ss_pred HHHHcCCCCCCEEEEEcCCCCc--cceecCCcHHHHHHHh
Confidence 4566799999999884322211 1456665555555443
No 305
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=35.98 E-value=80 Score=19.69 Aligned_cols=65 Identities=15% Similarity=0.344 Sum_probs=34.5
Q ss_pred cCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHc---CCCcccEEEEEEC-CeEEeeeeecCCCCHHHHHHH
Q 029575 105 ANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEY---KVYGLPTLILFKN-GQEVPESRREGAITKLKLKEY 180 (191)
Q Consensus 105 a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~---~v~~~Pt~~~~~~-g~~~~~~~~~g~~~~~~l~~~ 180 (191)
.+||++|++.+-.+....-. ..+..++..........+ ....+|++. ++ |..+ .....+.++
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i~----~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~--~~~~~~l--------~eS~aI~~y 78 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGLE----YKTVPVEFPDIPPILGELTSGGFYTVPVIV--DGSGEVI--------GDSFAIAEY 78 (84)
T ss_pred CCcCChhHHHHHHHHhCCCC----CeEEEecCCCcccccccccCCCCceeCeEE--ECCCCEE--------eCHHHHHHH
Confidence 36899999988666554322 344555544322222222 235688873 34 5443 244555666
Q ss_pred HHH
Q 029575 181 IDT 183 (191)
Q Consensus 181 i~~ 183 (191)
|++
T Consensus 79 L~~ 81 (84)
T cd03038 79 LEE 81 (84)
T ss_pred HHH
Confidence 554
No 306
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=35.88 E-value=66 Score=22.15 Aligned_cols=50 Identities=22% Similarity=0.392 Sum_probs=33.0
Q ss_pred ChhhhchHHHHHHHHHHhCCCeEEEEEECCCCH-HHHHHcC--CCcccEEEEEE
Q 029575 108 CGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANP-QLIEEYK--VYGLPTLILFK 158 (191)
Q Consensus 108 C~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-~~~~~~~--v~~~Pt~~~~~ 158 (191)
|++|..+...|...-. +.+.+.+.+|+..... ++....| -++.|.+++=+
T Consensus 24 Cp~c~~iEGlLa~~P~-l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~ 76 (112)
T PF11287_consen 24 CPHCAAIEGLLASFPD-LRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLAD 76 (112)
T ss_pred CCchHHHHhHHhhChh-hhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCC
Confidence 9999888766654332 2345888999987654 3444444 36899997743
No 307
>KOG2868 consensus Decapping enzyme complex component DCP1 [Transcription; RNA processing and modification]
Probab=35.55 E-value=1.1e+02 Score=25.14 Aligned_cols=37 Identities=8% Similarity=0.050 Sum_probs=18.1
Q ss_pred cccEEEEEE-CCeEEeeeeecCCCCHHHHHHHHHHHhh
Q 029575 150 GLPTLILFK-NGQEVPESRREGAITKLKLKEYIDTLLD 186 (191)
Q Consensus 150 ~~Pt~~~~~-~g~~~~~~~~~g~~~~~~l~~~i~~~l~ 186 (191)
.-.-+++|. +.+.+....+....+...+...+++++.
T Consensus 94 ~~g~fl~~rn~s~~i~glWf~d~~~~~ri~~L~~~ll~ 131 (335)
T KOG2868|consen 94 LQGPFLLYRNESGSIYGLWFYDKNDCQRIATLLKKLLY 131 (335)
T ss_pred ecCcceeeeccccceeEEEecCcchHHHHHHHHHHHHH
Confidence 334555554 2333433344444455566666666554
No 308
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=35.52 E-value=65 Score=20.69 Aligned_cols=77 Identities=26% Similarity=0.381 Sum_probs=42.2
Q ss_pred EEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEEeeeeecCCCCHHHHH
Q 029575 99 VLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLK 178 (191)
Q Consensus 99 vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~~l~ 178 (191)
.+.+.-++.+-+|.-- |++++..+.+ + ..+-+..+.+.-++. ..-.++.+|..|+.+ ..|..+.+++.
T Consensus 5 ~i~NIva~~~l~~~id---L~~la~~~~~-~---~YePe~fpgl~~r~~-~p~~t~~IF~sGki~----itGaks~~~~~ 72 (86)
T PF00352_consen 5 KIVNIVASFDLPFEID---LEELAEELEN-V---EYEPERFPGLIYRLR-NPKATVLIFSSGKIV----ITGAKSEEEAK 72 (86)
T ss_dssp EEEEEEEEEE-SSEB----HHHHHHHSTT-E---EEETTTESSEEEEET-TTTEEEEEETTSEEE----EEEESSHHHHH
T ss_pred EEEEEEEEEECCCccC---HHHHHhhccC-c---EEeeccCCeEEEeec-CCcEEEEEEcCCEEE----EEecCCHHHHH
Confidence 4555556666666553 4555555532 1 112221111111111 124788888888877 47888899988
Q ss_pred HHHHHHhhh
Q 029575 179 EYIDTLLDS 187 (191)
Q Consensus 179 ~~i~~~l~~ 187 (191)
+.++++++.
T Consensus 73 ~a~~~i~~~ 81 (86)
T PF00352_consen 73 KAIEKILPI 81 (86)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887654
No 309
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=35.07 E-value=75 Score=26.59 Aligned_cols=79 Identities=14% Similarity=0.151 Sum_probs=39.2
Q ss_pred cCCChhhhchHHH-HHHHHHHhCC---CeEEEEEECC-CC--HHHHHHcCCCc-ccEEEEEECCeEEeeeeecCCCCHHH
Q 029575 105 ANWCGPCRLVAPA-VEWLAQEYGD---RLTVVKIDHD-AN--PQLIEEYKVYG-LPTLILFKNGQEVPESRREGAITKLK 176 (191)
Q Consensus 105 a~wC~~C~~~~p~-l~~l~~~~~~---~v~~~~vd~d-~~--~~~~~~~~v~~-~Pt~~~~~~g~~~~~~~~~g~~~~~~ 176 (191)
-|.|+.|+.-.-. ..++.+.|.+ .+++.-.-|- .. ..-...+||.+ -+..++|.+|+.+. ...+..-.++
T Consensus 271 CPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~--kv~~~~~~~~ 348 (360)
T PRK00366 271 CPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIK--TLPEENIVEE 348 (360)
T ss_pred CCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEee--eeChHhHHHH
Confidence 3445555443322 2444444543 2444444442 21 22344567664 45677778888873 4444434455
Q ss_pred HHHHHHHHh
Q 029575 177 LKEYIDTLL 185 (191)
Q Consensus 177 l~~~i~~~l 185 (191)
|.+.|+++.
T Consensus 349 l~~~i~~~~ 357 (360)
T PRK00366 349 LEAEIEAYA 357 (360)
T ss_pred HHHHHHHHH
Confidence 555555543
No 310
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=34.70 E-value=2.1e+02 Score=22.05 Aligned_cols=59 Identities=17% Similarity=0.328 Sum_probs=36.9
Q ss_pred cCCChhhhchHHHHHHHHHHhCC-CeEEEEEECCC---------------------CHHHHHHcCC-----CcccEEEEE
Q 029575 105 ANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHDA---------------------NPQLIEEYKV-----YGLPTLILF 157 (191)
Q Consensus 105 a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~---------------------~~~~~~~~~v-----~~~Pt~~~~ 157 (191)
..-|+-|..+...+.-....+.. ++.|+.|.-.. ...+...|++ ...|.+-+|
T Consensus 82 ~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~i~afk~rmGW~~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~svF 161 (211)
T PF05988_consen 82 DEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEKIEAFKRRMGWTFPWYSSYGSDFNYDFGVSFDEGGEMPGLSVF 161 (211)
T ss_pred CCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHHHHHHHHhcCCCceEEEcCCCcccccccceeccCCCceeEEEE
Confidence 35699999999999444444433 48888886322 1223344565 467777777
Q ss_pred -ECCeEE
Q 029575 158 -KNGQEV 163 (191)
Q Consensus 158 -~~g~~~ 163 (191)
++|..|
T Consensus 162 ~Rdg~~V 168 (211)
T PF05988_consen 162 LRDGGRV 168 (211)
T ss_pred EEcCCEE
Confidence 466655
No 311
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=34.67 E-value=1e+02 Score=21.24 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=22.0
Q ss_pred HHHcCCCcccEEEEEECCeEEeeeeecCCCCHHHHHHHHH
Q 029575 143 IEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYID 182 (191)
Q Consensus 143 ~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~i~ 182 (191)
+-.|||+.+|.++| +++-+ -.|..+...-...++
T Consensus 77 Aw~lGi~k~PAVV~--D~~~V----VYG~~DV~~A~~~~~ 110 (113)
T TIGR03757 77 AWQLGVTKIPAVVV--DRRYV----VYGETDVARALALIQ 110 (113)
T ss_pred HHHcCCccCCEEEE--cCCeE----EecCccHHHHHHHHH
Confidence 44689999999977 44444 256666655554444
No 312
>KOG3384 consensus Selenoprotein [General function prediction only]
Probab=34.47 E-value=64 Score=23.07 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=28.0
Q ss_pred ccEEEEEECCeEEeeeeecCCCCHHHHHHHHHHHhhh
Q 029575 151 LPTLILFKNGQEVPESRREGAITKLKLKEYIDTLLDS 187 (191)
Q Consensus 151 ~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~l~~ 187 (191)
-|.+.+.++++++........++.+.+.+|+++.++.
T Consensus 117 ~P~l~llDadgk~kE~lsI~kWntdtl~eff~ekler 153 (154)
T KOG3384|consen 117 DPVLKLLDADGKHKESLSIDKWNTDTLEEFFREKLER 153 (154)
T ss_pred CCeeEeecCCCCccceeeecccChHHHHHHHHHHhcC
Confidence 4888888855544445677788999999999987764
No 313
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=34.44 E-value=1.2e+02 Score=22.17 Aligned_cols=42 Identities=10% Similarity=0.227 Sum_probs=35.6
Q ss_pred CCcEEEEEEcCCChhhhchHHHHHHHHHHhCC-CeEEEEEECC
Q 029575 96 ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGD-RLTVVKIDHD 137 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d 137 (191)
++-+.+.++++.++.|.-+...++.+++.|.+ +|.+-.+++.
T Consensus 127 ~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~~ 169 (171)
T PF07700_consen 127 DNELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVECM 169 (171)
T ss_dssp TTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred CCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 56778888999999999999999999999988 7777766654
No 314
>cd00307 RuBisCO_small_like Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. This superfamily also contains specific proteins from cyanobacteria. CcmM plays a role in a CO2 concentrating mechanism, which cyanobacteria need to to overcome t
Probab=33.36 E-value=54 Score=21.31 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=22.3
Q ss_pred EEcCC---Chhh--hchHHHH---HHHHHHhCCC-eEEEEEECC
Q 029575 103 FVANW---CGPC--RLVAPAV---EWLAQEYGDR-LTVVKIDHD 137 (191)
Q Consensus 103 F~a~w---C~~C--~~~~p~l---~~l~~~~~~~-v~~~~vd~d 137 (191)
||.-| |..| +.....+ ++-.++|++. |.++.+|..
T Consensus 28 ywt~w~lp~f~~~~~~~~~Vl~el~~c~~~~p~~YVRlig~D~~ 71 (84)
T cd00307 28 FRTSSWQSCGPIEGRSEAQVLAALEACLAEHPGEYVRLIGIDPK 71 (84)
T ss_pred cHhhhcCCCCCCCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeCC
Confidence 55544 6667 5444444 5556677775 888888865
No 315
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=33.09 E-value=77 Score=23.39 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=22.2
Q ss_pred EEEcCCChhhhchHHHHHHHHHHhC
Q 029575 102 EFVANWCGPCRLVAPAVEWLAQEYG 126 (191)
Q Consensus 102 ~F~a~wC~~C~~~~p~l~~l~~~~~ 126 (191)
.|+..-||.|-...+.+.++.++++
T Consensus 3 ~~~D~~cP~cyl~~~~l~~~~~~~~ 27 (201)
T cd03024 3 IWSDVVCPWCYIGKRRLEKALAELG 27 (201)
T ss_pred EEecCcCccHHHHHHHHHHHHHhCC
Confidence 4677789999999999999999985
No 316
>KOG4079 consensus Putative mitochondrial ribosomal protein mRpS25 [Translation, ribosomal structure and biogenesis]
Probab=32.97 E-value=47 Score=23.73 Aligned_cols=38 Identities=13% Similarity=0.192 Sum_probs=26.1
Q ss_pred CcccEEEEE-ECCeEEeeeeecCCCCHHHHHHHHHHHhhhh
Q 029575 149 YGLPTLILF-KNGQEVPESRREGAITKLKLKEYIDTLLDSI 188 (191)
Q Consensus 149 ~~~Pt~~~~-~~g~~~~~~~~~g~~~~~~l~~~i~~~l~~~ 188 (191)
...|..-.| ++|+.+ .......+.++|.+.|.+.+++.
T Consensus 72 tpsPF~R~YlddGr~v--L~Dld~~~r~eI~~hl~K~lGKt 110 (169)
T KOG4079|consen 72 TPSPFARAYLDDGREV--LFDLDGMKREEIEKHLAKTLGKT 110 (169)
T ss_pred CCChHHHheecCcceE--EEEcccccHHHHHHHHHHHhCcc
Confidence 344555555 577777 45555678999999998887654
No 317
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=32.59 E-value=2.1e+02 Score=21.34 Aligned_cols=61 Identities=16% Similarity=0.152 Sum_probs=36.9
Q ss_pred CcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCC-HHHHHHcCCCcccEEEEEECCeEE
Q 029575 97 RPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDAN-PQLIEEYKVYGLPTLILFKNGQEV 163 (191)
Q Consensus 97 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~-~~~~~~~~v~~~Pt~~~~~~g~~~ 163 (191)
...+..|+.++|+.|++..=.+++.. -.+.+..||.... +++.+..-...+|++. ++|..+
T Consensus 8 ~~~~~Ly~~~~s~~~~rv~~~L~e~g----l~~e~~~v~~~~~~~~~~~~nP~g~VPvL~--~~g~~l 69 (211)
T PRK09481 8 RSVMTLFSGPTDIYSHQVRIVLAEKG----VSVEIEQVEKDNLPQDLIDLNPYQSVPTLV--DRELTL 69 (211)
T ss_pred CCeeEEeCCCCChhHHHHHHHHHHCC----CCCEEEeCCcccCCHHHHHhCCCCCCCEEE--ECCEEe
Confidence 33455566778999999886555542 2355666665433 3455443456789995 455543
No 318
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=31.33 E-value=1.6e+02 Score=19.50 Aligned_cols=69 Identities=25% Similarity=0.375 Sum_probs=38.4
Q ss_pred CChhhhchH------HHHHH-HHHHhCCC-eEEEEEECCCCH------HHHHHc--CCCcccEEEEEECCeEEeeeeecC
Q 029575 107 WCGPCRLVA------PAVEW-LAQEYGDR-LTVVKIDHDANP------QLIEEY--KVYGLPTLILFKNGQEVPESRREG 170 (191)
Q Consensus 107 wC~~C~~~~------p~l~~-l~~~~~~~-v~~~~vd~d~~~------~~~~~~--~v~~~Pt~~~~~~g~~~~~~~~~g 170 (191)
-|..|..+- ..|+. +.++|+++ +.|-.||+.+.+ +++++. .-.-+|-+++ +|+.+ ..|
T Consensus 8 ~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i--~~eiV----~EG 81 (93)
T PF07315_consen 8 ICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVI--NDEIV----AEG 81 (93)
T ss_dssp --GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEE--TTEEE----EES
T ss_pred cchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEE--CCEEE----ecC
Confidence 488887653 23332 46678875 999999987543 344433 2335787755 77776 477
Q ss_pred CCCHHHHHHHH
Q 029575 171 AITKLKLKEYI 181 (191)
Q Consensus 171 ~~~~~~l~~~i 181 (191)
......+.+++
T Consensus 82 np~LK~I~~~~ 92 (93)
T PF07315_consen 82 NPQLKDIYEEM 92 (93)
T ss_dssp S--HHHHHHHH
T ss_pred CccHHHHHHhh
Confidence 76666666655
No 319
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=31.30 E-value=2.3e+02 Score=21.27 Aligned_cols=55 Identities=13% Similarity=0.165 Sum_probs=28.4
Q ss_pred EEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeE
Q 029575 103 FVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQE 162 (191)
Q Consensus 103 F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~ 162 (191)
++...|++|++..=.+....-. +..+.++.++.....+......+|++.. ++|..
T Consensus 3 y~~~~sp~~~kvr~~L~~~gl~----~e~~~~~~~~~~~~~~~np~g~vP~l~~-~~g~~ 57 (209)
T TIGR02182 3 YIYDHCPFCVRARMIFGLKNIP----VEKHVLLNDDEETPIRMIGAKQVPILQK-DDGRA 57 (209)
T ss_pred ecCCCCChHHHHHHHHHHcCCC----eEEEECCCCcchhHHHhcCCCCcceEEe-eCCeE
Confidence 4567799999877555444222 2333333333222322223467897743 45543
No 320
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=30.65 E-value=1.3e+02 Score=18.12 Aligned_cols=55 Identities=18% Similarity=0.090 Sum_probs=31.2
Q ss_pred EEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCC--CcccEEEEEECCeE
Q 029575 102 EFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKV--YGLPTLILFKNGQE 162 (191)
Q Consensus 102 ~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v--~~~Pt~~~~~~g~~ 162 (191)
.++.+.|++|++..-.+....- .+....++.........+++- ..+|++. ++|..
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~gl----~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~--~~~~~ 59 (74)
T cd03058 3 LLGAWASPFVLRVRIALALKGV----PYEYVEEDLGNKSELLLASNPVHKKIPVLL--HNGKP 59 (74)
T ss_pred EEECCCCchHHHHHHHHHHcCC----CCEEEEeCcccCCHHHHHhCCCCCCCCEEE--ECCEE
Confidence 4567789999998865555422 244445554332222334443 5799884 35543
No 321
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=30.39 E-value=1.3e+02 Score=18.10 Aligned_cols=58 Identities=17% Similarity=0.164 Sum_probs=34.3
Q ss_pred EEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECC----CCHHHHHHcCCCcccEEEEEECCeEE
Q 029575 100 LVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHD----ANPQLIEEYKVYGLPTLILFKNGQEV 163 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d----~~~~~~~~~~v~~~Pt~~~~~~g~~~ 163 (191)
+..|+.+.|+.|++..-.++...- .+.+..++.. ..+.+.+......+|.+. ++|..+
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i----~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~--~~g~~l 63 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGV----DYELVPVDLTKGEHKSPEHLARNPFGQIPALE--DGDLKL 63 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCC----CcEEEEeCccccccCCHHHHhhCCCCCCCEEE--ECCEEE
Confidence 345566779999998866655432 2445555543 224455555667799874 455443
No 322
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=29.89 E-value=19 Score=25.77 Aligned_cols=13 Identities=38% Similarity=0.782 Sum_probs=11.4
Q ss_pred CChhhhchHHHHH
Q 029575 107 WCGPCRLVAPAVE 119 (191)
Q Consensus 107 wC~~C~~~~p~l~ 119 (191)
-|++|++..|.|.
T Consensus 11 ~CPhCRQ~ipALt 23 (163)
T TIGR02652 11 RCPHCRQNIPALT 23 (163)
T ss_pred cCchhhcccchhe
Confidence 6999999999873
No 323
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=29.74 E-value=19 Score=25.77 Aligned_cols=13 Identities=38% Similarity=0.810 Sum_probs=11.3
Q ss_pred CChhhhchHHHHH
Q 029575 107 WCGPCRLVAPAVE 119 (191)
Q Consensus 107 wC~~C~~~~p~l~ 119 (191)
-|++|+++.|.|.
T Consensus 8 ~CPhCRq~ipALt 20 (161)
T PF09654_consen 8 QCPHCRQTIPALT 20 (161)
T ss_pred cCchhhcccchhe
Confidence 6999999999873
No 324
>PRK10853 putative reductase; Provisional
Probab=28.76 E-value=62 Score=22.31 Aligned_cols=32 Identities=9% Similarity=-0.008 Sum_probs=21.4
Q ss_pred EEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECC
Q 029575 100 LVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHD 137 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d 137 (191)
+..|+-+.|..|++....|++- ++.+-.+|.-
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~------~i~~~~~d~~ 33 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ------GIDYRFHDYR 33 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc------CCCcEEeehc
Confidence 3467789999999988666543 2445555543
No 325
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=28.62 E-value=1.3e+02 Score=22.47 Aligned_cols=32 Identities=19% Similarity=0.367 Sum_probs=25.6
Q ss_pred cEEEEEECCeEEeeeeecCCCCHHHHHHHHHHHhhh
Q 029575 152 PTLILFKNGQEVPESRREGAITKLKLKEYIDTLLDS 187 (191)
Q Consensus 152 Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~l~~ 187 (191)
+++++|..||.+ ..|.-+.+++...++++++.
T Consensus 54 ~a~LIF~SGK~V----cTGaKs~ed~~~av~~~~~~ 85 (185)
T COG2101 54 TAALIFRSGKVV----CTGAKSVEDVHRAVKKLAKK 85 (185)
T ss_pred ceEEEEecCcEE----EeccCcHHHHHHHHHHHHHH
Confidence 577788888876 68999999988888887654
No 326
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=28.61 E-value=90 Score=23.89 Aligned_cols=40 Identities=18% Similarity=0.385 Sum_probs=26.5
Q ss_pred HHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEE
Q 029575 118 VEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEV 163 (191)
Q Consensus 118 l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~ 163 (191)
+.++.+.++..+.| |.+..+.++|+|+.+|+++. .+|+..
T Consensus 158 ~~~l~~~l~~~vYf-----dQ~g~Lt~rF~I~~VPavV~-q~g~~l 197 (202)
T TIGR02743 158 VNELEKRLDSRIYF-----DQHGKLTQKFGIKHVPARVS-QEGLRL 197 (202)
T ss_pred HHHHHHHhCCceEE-----cCCchHhhccCceeeceEEE-ecCCEE
Confidence 34455555433333 44567999999999999976 566654
No 327
>PF12617 LdpA_C: Iron-Sulfur binding protein C terminal; InterPro: IPR021039 This entry represents the C-terminal region of the iron-sulphur protein LdpA (Light dependent period), which is found in phototropic organisms. LdpA was originally identified in cyanobacteria where it is involved in light-dependent modulation of the circadian clock. The presence of iron-sulphur clusters on LdpA suggests that it may modulate the circadian clock as an indirect function of light intensity by sensing changes in cellular physiology [].
Probab=28.14 E-value=2.6e+02 Score=21.06 Aligned_cols=70 Identities=19% Similarity=0.259 Sum_probs=43.2
Q ss_pred chHHHHHHHHHHhCCCeEEEEEECCCCHHHHHH----cC-CCcccEEEEEE-CCeEEeeeeecCCCCHHHHHHHHHHHh
Q 029575 113 LVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEE----YK-VYGLPTLILFK-NGQEVPESRREGAITKLKLKEYIDTLL 185 (191)
Q Consensus 113 ~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~----~~-v~~~Pt~~~~~-~g~~~~~~~~~g~~~~~~l~~~i~~~l 185 (191)
.+...|+.++.-... ++.+.|.|..++.+.+. |. +...|...+.. +|+.+. -..|.-+...-+++.++++
T Consensus 22 ~F~~lw~~l~~~~~~-Lk~lAiSc~~~~~li~~L~~~~~~l~~l~~~~iWQ~DGRPMS--GDIG~GTt~aaV~l~~~v~ 97 (183)
T PF12617_consen 22 AFERLWQALAPSVPQ-LKLLAISCPDGEGLIDYLWQLYEILRPLPCPLIWQLDGRPMS--GDIGDGTTRAAVKLAQKVL 97 (183)
T ss_pred HHHHHHHHHHhhhhh-ccEEEEECCCCHHHHHHHHHHHHHHhccCCCeeEeeCCcccC--CCCCCcHHHHHHHHHHHHh
Confidence 444555555554443 88999999887655443 33 34466666675 888884 4455555555566666654
No 328
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=27.50 E-value=85 Score=21.95 Aligned_cols=22 Identities=9% Similarity=0.070 Sum_probs=17.1
Q ss_pred EEEEEcCCChhhhchHHHHHHH
Q 029575 100 LVEFVANWCGPCRLVAPAVEWL 121 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l 121 (191)
+..|+-+.|..|++....|++-
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~ 24 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKAS 24 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 5567889999999988666543
No 329
>PRK10026 arsenate reductase; Provisional
Probab=27.22 E-value=78 Score=22.71 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=17.1
Q ss_pred EEEEEcCCChhhhchHHHHHHH
Q 029575 100 LVEFVANWCGPCRLVAPAVEWL 121 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l 121 (191)
+..|+-+.|..|++....|++-
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~ 25 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS 25 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 5567889999999988666543
No 330
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=26.80 E-value=1.9e+02 Score=20.19 Aligned_cols=54 Identities=17% Similarity=0.343 Sum_probs=36.7
Q ss_pred cCCChhhhchHHHHHHHHHHh----CC---CeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEE
Q 029575 105 ANWCGPCRLVAPAVEWLAQEY----GD---RLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEV 163 (191)
Q Consensus 105 a~wC~~C~~~~p~l~~l~~~~----~~---~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~ 163 (191)
...|..|......+.++.+++ .. .+.+-++.++. .+++..+ ..-|++.+ +|+.+
T Consensus 12 g~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~-~~~~~~~--~~S~~I~i--nG~pi 72 (120)
T PF10865_consen 12 GKTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDE-EEFARQP--LESPTIRI--NGRPI 72 (120)
T ss_pred CCcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECCh-HHHhhcc--cCCCeeeE--CCEeh
Confidence 348999999988887766653 22 37777777776 4667666 44577755 66655
No 331
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=26.52 E-value=1.3e+02 Score=21.24 Aligned_cols=24 Identities=13% Similarity=0.523 Sum_probs=17.0
Q ss_pred EEEEc--CCChhhhchHHHHHHHHHHhCC
Q 029575 101 VEFVA--NWCGPCRLVAPAVEWLAQEYGD 127 (191)
Q Consensus 101 v~F~a--~wC~~C~~~~p~l~~l~~~~~~ 127 (191)
|..|+ +-|..|.. .++++.++|++
T Consensus 99 i~l~te~~pC~SC~~---vi~qF~~~~pn 124 (133)
T PF14424_consen 99 IDLFTELPPCESCSN---VIEQFKKDFPN 124 (133)
T ss_pred EEEEecCCcChhHHH---HHHHHHHHCCC
Confidence 44444 56999986 56778888887
No 332
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=26.35 E-value=1.1e+02 Score=23.48 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=20.2
Q ss_pred CCCHHHHHHcCCCcccEEEEE-ECCeEE
Q 029575 137 DANPQLIEEYKVYGLPTLILF-KNGQEV 163 (191)
Q Consensus 137 d~~~~~~~~~~v~~~Pt~~~~-~~g~~~ 163 (191)
|....+.++|+|+.+|+++.- .+|+..
T Consensus 170 dQ~G~Lt~rF~I~~VPAvV~~~q~G~~l 197 (209)
T PRK13738 170 DQNGVLCQRFGIDQVPARVSAVPGGRFL 197 (209)
T ss_pred cCcchHHHhcCCeeeceEEEEcCCCCEE
Confidence 445568999999999999751 466654
No 333
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=25.46 E-value=47 Score=25.58 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCChhhhchHHHHHHHH
Q 029575 96 ERPVLVEFVANWCGPCRLVAPAVEWLA 122 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~C~~~~p~l~~l~ 122 (191)
.+..++.|....|++|++..+.+++..
T Consensus 84 ~~v~v~~f~d~~Cp~C~~~~~~l~~~~ 110 (244)
T COG1651 84 APVTVVEFFDYTCPYCKEAFPELKKKY 110 (244)
T ss_pred CCceEEEEecCcCccHHHHHHHHHHHh
Confidence 378899999999999988888887744
No 334
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=25.45 E-value=71 Score=25.74 Aligned_cols=83 Identities=20% Similarity=0.250 Sum_probs=51.3
Q ss_pred CCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECC------CCHHHHHHcCC-CcccEEEEEECCeEEeeeee
Q 029575 96 ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHD------ANPQLIEEYKV-YGLPTLILFKNGQEVPESRR 168 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d------~~~~~~~~~~v-~~~Pt~~~~~~g~~~~~~~~ 168 (191)
.....|-.|++.|..-..+.|..+.. +=++ |+.|-.. .+..+...|.. .+.|.+..+.=|.+. .+
T Consensus 74 ~~t~~IR~Y~sDCn~le~v~pAa~~~----g~kv-~lGiw~tdd~~~~~~~til~ay~~~~~~d~v~~v~VGnEa---l~ 145 (305)
T COG5309 74 SYTHSIRTYGSDCNTLENVLPAAEAS----GFKV-FLGIWPTDDIHDAVEKTILSAYLPYNGWDDVTTVTVGNEA---LN 145 (305)
T ss_pred cCCceEEEeeccchhhhhhHHHHHhc----CceE-EEEEeeccchhhhHHHHHHHHHhccCCCCceEEEEechhh---hh
Confidence 34448889998877655544443333 2122 3333211 12245555554 357877777767766 67
Q ss_pred cCCCCHHHHHHHHHHHhh
Q 029575 169 EGAITKLKLKEYIDTLLD 186 (191)
Q Consensus 169 ~g~~~~~~l~~~i~~~l~ 186 (191)
.+..+.++|.+.|.....
T Consensus 146 r~~~tasql~~~I~~vrs 163 (305)
T COG5309 146 RNDLTASQLIEYIDDVRS 163 (305)
T ss_pred cCCCCHHHHHHHHHHHHH
Confidence 889999999999987654
No 335
>PF05626 DUF790: Protein of unknown function (DUF790); InterPro: IPR008508 This family consists of several hypothetical bacterial and archaeal proteins whose functions have not been experimentally verified. Computational analysis of sequence, predicted structure and genomic context suggests that these proteins may be endonucleases involved in either restriction-modification and/or DNA excision repair [].
Probab=24.94 E-value=1.5e+02 Score=25.06 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=31.1
Q ss_pred CcccEEEEEECCeEEeeeeecCCCCHHHHHHHHHHHhh
Q 029575 149 YGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLLD 186 (191)
Q Consensus 149 ~~~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~l~ 186 (191)
--+|.+.+-++|..+. ....|.++++-+.+.++++-+
T Consensus 301 v~IPDF~~~~~g~~vy-lEIvGfWtpeYL~rKl~kl~~ 337 (379)
T PF05626_consen 301 VMIPDFRFEHDGRRVY-LEIVGFWTPEYLERKLEKLRK 337 (379)
T ss_pred EEccceeEEECCEEEE-EEEecCCCHHHHHHHHHHHhh
Confidence 3589999888787775 689999999999999998743
No 336
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=24.21 E-value=2.2e+02 Score=19.04 Aligned_cols=21 Identities=14% Similarity=0.263 Sum_probs=15.6
Q ss_pred EEEEEcCCChhhhchH-HHHHH
Q 029575 100 LVEFVANWCGPCRLVA-PAVEW 120 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~-p~l~~ 120 (191)
|-.||.+-||.|+.+. ..|..
T Consensus 3 v~vyyESlCPd~~~fi~~~L~p 24 (108)
T PF03227_consen 3 VEVYYESLCPDCRRFITNQLFP 24 (108)
T ss_pred EEEEEEecCHhHHHHHHHHHHH
Confidence 5678999999999863 33443
No 337
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=24.17 E-value=2.5e+02 Score=19.34 Aligned_cols=89 Identities=19% Similarity=0.241 Sum_probs=51.6
Q ss_pred CCcEEEEEEc-CCChhhhchHHHHHHHHHHh----CCC------eEEEEEECCCCHHHHHHcCC-CcccEEEEEE-CCeE
Q 029575 96 ERPVLVEFVA-NWCGPCRLVAPAVEWLAQEY----GDR------LTVVKIDHDANPQLIEEYKV-YGLPTLILFK-NGQE 162 (191)
Q Consensus 96 ~k~vlv~F~a-~wC~~C~~~~p~l~~l~~~~----~~~------v~~~~vd~d~~~~~~~~~~v-~~~Pt~~~~~-~g~~ 162 (191)
..+.+|.|.. ..-+.-+...+.++.+++++ +.+ +.|+..+-+-...+..-.+. ...|-+++++ ..+.
T Consensus 14 ~~p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede~tdsLRDf~nL~d~~P~LviLDip~r~ 93 (116)
T cd03071 14 EGPCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDDMTDSLRDYTNLPEAAPLLTILDMSARA 93 (116)
T ss_pred CCceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccchHHHHHHHhcCCCccCceEEEEeccccc
Confidence 5666777764 34445666666666655543 221 33444443333334444455 3579999987 3333
Q ss_pred EeeeeecCCCCHHHHHHHHHHHh
Q 029575 163 VPESRREGAITKLKLKEYIDTLL 185 (191)
Q Consensus 163 ~~~~~~~g~~~~~~l~~~i~~~l 185 (191)
+. .--....+.+.+.+|+..++
T Consensus 94 ~~-v~~~eeIT~e~~~~fv~~yl 115 (116)
T cd03071 94 KY-VMDVEEITPAIVEAFVSDFL 115 (116)
T ss_pred eE-eCchHhcCHHHHHHHHHHhh
Confidence 31 23446789999999998875
No 338
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=23.86 E-value=1.5e+02 Score=19.56 Aligned_cols=67 Identities=21% Similarity=0.331 Sum_probs=40.0
Q ss_pred CCChhhhchHHHHHHHHHHhCC----CeEEEEEECCCCHHHHHHcCC-CcccEEEEEECCeEEeeeeecCCCCHHHHHHH
Q 029575 106 NWCGPCRLVAPAVEWLAQEYGD----RLTVVKIDHDANPQLIEEYKV-YGLPTLILFKNGQEVPESRREGAITKLKLKEY 180 (191)
Q Consensus 106 ~wC~~C~~~~p~l~~l~~~~~~----~v~~~~vd~d~~~~~~~~~~v-~~~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~ 180 (191)
..|..+- .+.++.+.+.+.+ ++.+....+ ++. +.=|++++|..+.. ...|..+++++.+.
T Consensus 14 ~~C~~~g--~~l~~~l~~~l~~~~~~~v~v~~~~c---------lG~c~~gp~vvvyP~~~g----~wy~~v~p~~v~~I 78 (97)
T cd03062 14 KRCGICG--PPLAAELRAELPEHGPGGVRVWEVSH---------VGGHKFAGNVIIYPKGDG----IWYGRVTPEHVPPI 78 (97)
T ss_pred cChhhcC--HHHHHHHHHHHHHhCCCceEEEeCCc---------CCccCcCCEEEEEeCCCe----eEEeecCHHHHHHH
Confidence 3565543 3456666665532 355544433 222 23499999873111 35677899999999
Q ss_pred HHHHhhh
Q 029575 181 IDTLLDS 187 (191)
Q Consensus 181 i~~~l~~ 187 (191)
|++++..
T Consensus 79 v~~hl~~ 85 (97)
T cd03062 79 VDRLILG 85 (97)
T ss_pred HHHHhcC
Confidence 9988753
No 339
>PF06616 BsuBI_PstI_RE: BsuBI/PstI restriction endonuclease C-terminus; InterPro: IPR009528 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents the C terminus of bacterial enzymes similar to type II restriction endonucleases BsuBI and PstI (3.1.21.4 from EC). The enzymes of the BsuBI restriction/modification (R/M) system recognise the target sequence 5'CTGCAG and are functionally identical with those of the PstI R/M system [].; GO: 0000287 magnesium ion binding, 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system; PDB: 2IXS_B.
Probab=23.47 E-value=4.2e+02 Score=21.77 Aligned_cols=73 Identities=15% Similarity=0.340 Sum_probs=41.2
Q ss_pred ChhhhchHHHHHHHHHHhCCCeEEEEEECCC------CHHHHHHcCCC-----cccEEEEEECCeE----EeeeeecCCC
Q 029575 108 CGPCRLVAPAVEWLAQEYGDRLTVVKIDHDA------NPQLIEEYKVY-----GLPTLILFKNGQE----VPESRREGAI 172 (191)
Q Consensus 108 C~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~------~~~~~~~~~v~-----~~Pt~~~~~~g~~----~~~~~~~g~~ 172 (191)
-++.......+++++.+|-.+-.+++|.-.. +.++.+++|+. ..|-+++++.++. +..+...|..
T Consensus 161 G~hn~L~kaIIEeFaprF~pg~~vLyvgDtg~K~~~~d~~~l~~LGi~i~~h~klPDvVl~~~~k~wl~liEaVtS~GPv 240 (306)
T PF06616_consen 161 GPHNELIKAIIEEFAPRFAPGPEVLYVGDTGDKVLYFDEELLKELGITIDAHGKLPDVVLYDEEKNWLFLIEAVTSHGPV 240 (306)
T ss_dssp STTHHHHHHHHHTHHHHHSTT-EEEEEE-SSSS-EEE-HHHHHHC-----TT----SEEEEETTTTEEEEEEE--TT---
T ss_pred CcchHHHHHHHHHHHHhhCCCceEEEEcCCCCceeeccHHHHHHcCCCccccCCCCCEEEEeCCCCcEEEEEEEcCcCCC
Confidence 4677777888899999997666666665332 35788888875 6899999997764 2224567777
Q ss_pred CHHHHHHH
Q 029575 173 TKLKLKEY 180 (191)
Q Consensus 173 ~~~~l~~~ 180 (191)
+.+...++
T Consensus 241 ~~kR~~eL 248 (306)
T PF06616_consen 241 DPKRKREL 248 (306)
T ss_dssp -HHHHHHH
T ss_pred CHHHHHHH
Confidence 77655443
No 340
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=23.43 E-value=1.9e+02 Score=18.45 Aligned_cols=60 Identities=18% Similarity=0.123 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEEeeeeecCCCCHHHHHHHHHHHhhhhc
Q 029575 115 APAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLLDSIS 189 (191)
Q Consensus 115 ~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~l~~~~ 189 (191)
...+++|.+ .++ +.++..+|-..= |.-..-.+. +-+|+.+ .| .+++++.+.|.+.+++..
T Consensus 17 ~~~~~~Le~-~p~-~~Vie~gCl~~C------g~C~~~pFA-lVnG~~V-----~A-~t~eeL~~kI~~~i~e~~ 76 (78)
T PF07293_consen 17 DQVYEKLEK-DPD-IDVIEYGCLSYC------GPCAKKPFA-LVNGEIV-----AA-ETAEELLEKIKEKIEENP 76 (78)
T ss_pred HHHHHHHhc-CCC-ccEEEcChhhhC------cCCCCCccE-EECCEEE-----ec-CCHHHHHHHHHHHHhccc
Confidence 344555543 344 777777665432 222222233 3478777 33 499999999999887643
No 341
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=23.37 E-value=1.5e+02 Score=23.65 Aligned_cols=45 Identities=31% Similarity=0.485 Sum_probs=28.6
Q ss_pred CCCCHHHHHHcCCCcccEEEEEECCeEEeeeeecCCCCHHHHHHHHHHH
Q 029575 136 HDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTL 184 (191)
Q Consensus 136 ~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~ 184 (191)
+|-.+++.++++|.-+|-.+.++ |+.. ......+.++|.+.+.+.
T Consensus 10 ~dl~~~~~~~~~i~vvPl~i~~~-~~~y---~D~~~i~~~efy~~l~~~ 54 (280)
T PF02645_consen 10 SDLPPELAEEYGIYVVPLNIIID-GKEY---RDGVDISPEEFYEKLRES 54 (280)
T ss_dssp G---HHHHHHTTEEEE--EEEET-TEEE---ETTTTSCHHHHHHHHHHT
T ss_pred CCCCHHHHHhCCeEEEeEEEecC-CeEE---ecCCCCCHHHHHHHHHhc
Confidence 34557889999999999998874 4444 222267888888877543
No 342
>KOG2990 consensus C2C2-type Zn-finger protein [Function unknown]
Probab=22.14 E-value=63 Score=26.09 Aligned_cols=21 Identities=19% Similarity=0.600 Sum_probs=16.1
Q ss_pred CCcEEEEEEc---CCChhhhchHH
Q 029575 96 ERPVLVEFVA---NWCGPCRLVAP 116 (191)
Q Consensus 96 ~k~vlv~F~a---~wC~~C~~~~p 116 (191)
....||-|-. -||.-|+....
T Consensus 40 ~gilvIRFEMPynIWC~gC~nhIg 63 (317)
T KOG2990|consen 40 QGILVIRFEMPYNIWCDGCKNHIG 63 (317)
T ss_pred cceEEEEEecccchhhccHHHhhh
Confidence 5678888854 49999987653
No 343
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=22.09 E-value=1.1e+02 Score=25.63 Aligned_cols=75 Identities=23% Similarity=0.270 Sum_probs=37.9
Q ss_pred ChhhhchHHHHHHHHHHh-------CCCeEEEEEECCCC-H-HH-HHHcCCC-c-ccEEEEEECCeEEeeeee-cCCCCH
Q 029575 108 CGPCRLVAPAVEWLAQEY-------GDRLTVVKIDHDAN-P-QL-IEEYKVY-G-LPTLILFKNGQEVPESRR-EGAITK 174 (191)
Q Consensus 108 C~~C~~~~p~l~~l~~~~-------~~~v~~~~vd~d~~-~-~~-~~~~~v~-~-~Pt~~~~~~g~~~~~~~~-~g~~~~ 174 (191)
||.|-+..=.+.++.++. +..+++.-+-|-=| + +. -..||+. + --...+|+.|+.+. +. ....-.
T Consensus 271 CPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~--k~~~ee~~v 348 (359)
T PF04551_consen 271 CPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVK--KVIPEEEIV 348 (359)
T ss_dssp ----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEE--EE-CSTCHH
T ss_pred CCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEE--ecCCHHHHH
Confidence 666655555555554443 22366666665422 2 11 1245555 3 33477888888884 44 555566
Q ss_pred HHHHHHHHHH
Q 029575 175 LKLKEYIDTL 184 (191)
Q Consensus 175 ~~l~~~i~~~ 184 (191)
++|.+.|+++
T Consensus 349 d~L~~~I~~~ 358 (359)
T PF04551_consen 349 DELIELIEEH 358 (359)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 7777777765
No 344
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=21.90 E-value=69 Score=19.26 Aligned_cols=15 Identities=13% Similarity=0.177 Sum_probs=12.1
Q ss_pred CCChhhhchHHHHHH
Q 029575 106 NWCGPCRLVAPAVEW 120 (191)
Q Consensus 106 ~wC~~C~~~~p~l~~ 120 (191)
+||++|.+.+-.++.
T Consensus 14 s~sp~~~~v~~~L~~ 28 (72)
T cd03054 14 SLSPECLKVETYLRM 28 (72)
T ss_pred CCCHHHHHHHHHHHh
Confidence 589999998866655
No 345
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=21.73 E-value=2.6e+02 Score=21.42 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=23.6
Q ss_pred CCcEEEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEEEC
Q 029575 96 ERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDH 136 (191)
Q Consensus 96 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~ 136 (191)
..--+..|....|+.|......+.. . ...+.++-|+.
T Consensus 108 ~~~rlalFvkd~C~~C~~~~~~l~a---~-~~~~Diylvgs 144 (200)
T TIGR03759 108 GGGRLALFVKDDCVACDARVQRLLA---D-NAPLDLYLVGS 144 (200)
T ss_pred CCCeEEEEeCCCChHHHHHHHHHhc---C-CCceeEEEecC
Confidence 3445666777999999998866622 1 22366666653
No 346
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the F subunit of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. This entry represents the iron-sulphur binding domain of the F subunit.; GO: 0055114 oxidation-reduction process; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=21.38 E-value=54 Score=18.49 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=14.1
Q ss_pred CChhhhchHHHHHHHHHHhC
Q 029575 107 WCGPCRLVAPAVEWLAQEYG 126 (191)
Q Consensus 107 wC~~C~~~~p~l~~l~~~~~ 126 (191)
+|.||+.=.+.+.++.+++.
T Consensus 18 kC~PCR~Gt~~l~~~l~~i~ 37 (46)
T PF10589_consen 18 KCTPCREGTRQLAEILEKIV 37 (46)
T ss_dssp --HHHHCCCCHHHHHHHHHT
T ss_pred CCCCcHhHHHHHHHHHHHHH
Confidence 79999988888877776653
No 347
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=21.15 E-value=2.5e+02 Score=21.02 Aligned_cols=35 Identities=9% Similarity=0.007 Sum_probs=25.7
Q ss_pred EEEEEcCCChhhhchHHHHHHHHHHhCCCeEEEEE
Q 029575 100 LVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKI 134 (191)
Q Consensus 100 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~v 134 (191)
|=.|+..-||.|-.-...++++.+.++-.|.+.-+
T Consensus 3 Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~ 37 (209)
T cd03021 3 IELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPV 37 (209)
T ss_pred eEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEee
Confidence 33566778999999999999998876544444444
No 348
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=21.01 E-value=87 Score=20.96 Aligned_cols=73 Identities=16% Similarity=0.168 Sum_probs=36.5
Q ss_pred EEcCCChhhhchHHHHHHHHHHhCCCeEEEEEECCCCH-------HHHHHcCCCcccEEEEEE-CCeEEeee--eecCCC
Q 029575 103 FVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANP-------QLIEEYKVYGLPTLILFK-NGQEVPES--RREGAI 172 (191)
Q Consensus 103 F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-------~~~~~~~v~~~Pt~~~~~-~g~~~~~~--~~~g~~ 172 (191)
|+-+.|..|++....|++- ++.+-.+|..+.+ ++.+.++.. + .- ++. .|...... .....+
T Consensus 1 Y~~~~C~t~rka~~~L~~~------gi~~~~~d~~k~p~s~~el~~~l~~~~~~-~-~~-lin~~~~~~k~l~~~~~~~~ 71 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEEN------GIEYEFIDYKKEPLSREELRELLSKLGNG-P-DD-LINTRSKTYKELGKLKKDDL 71 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHT------T--EEEEETTTS---HHHHHHHHHHHTSS-G-GG-GB-TTSHHHHHTTHHHCTTS
T ss_pred CcCCCCHHHHHHHHHHHHc------CCCeEeehhhhCCCCHHHHHHHHHHhccc-H-HH-HhcCccchHhhhhhhhhhhh
Confidence 5678999999998766652 2666778876543 344444422 1 11 233 34332100 012356
Q ss_pred CHHHHHHHHHHH
Q 029575 173 TKLKLKEYIDTL 184 (191)
Q Consensus 173 ~~~~l~~~i~~~ 184 (191)
+.+++.++|.+.
T Consensus 72 s~~e~i~~l~~~ 83 (110)
T PF03960_consen 72 SDEELIELLLEN 83 (110)
T ss_dssp BHHHHHHHHHHS
T ss_pred hhHHHHHHHHhC
Confidence 777777777654
No 349
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=20.93 E-value=2.8e+02 Score=21.94 Aligned_cols=44 Identities=27% Similarity=0.420 Sum_probs=28.7
Q ss_pred CCCCHHHHHHcCCCcccEEEEEECCeEEeeeeecCCCCHHHHHHHHHH
Q 029575 136 HDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDT 183 (191)
Q Consensus 136 ~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~i~~ 183 (191)
+|-.++.+++++|.-+|-.+.++ |+.+. . .-..+.++|.+.+++
T Consensus 9 ~dl~~~~~~~~~I~vvPl~I~~~-~~~y~--D-~~~i~~~~~y~~~~~ 52 (275)
T TIGR00762 9 ADLPPELIEEYGITVVPLTVIID-GKTYR--D-GVDITPEEFYEKLKE 52 (275)
T ss_pred cCCCHHHHHHcCCEEEEEEEEEC-CEEee--c-CCCCCHHHHHHHHHh
Confidence 44557888999999999998874 54442 1 112456666655544
No 350
>PRK13669 hypothetical protein; Provisional
Probab=20.33 E-value=2.3e+02 Score=18.19 Aligned_cols=56 Identities=27% Similarity=0.200 Sum_probs=34.6
Q ss_pred HHHHHHHhCCCeEEEEEECCCCHHHHHHcCCCcccEEEEEECCeEEeeeeecCCCCHHHHHHHHHHHhhhh
Q 029575 118 VEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYIDTLLDSI 188 (191)
Q Consensus 118 l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~i~~~l~~~ 188 (191)
++.+ +++++ +.++..+|-..-..+++ -| +.+-+|+.+ .| .+++++.+.|.+.++..
T Consensus 20 ~~~L-e~dP~-~dVie~gCls~CG~C~~-----~~--FAlVng~~V-----~a-~t~eeL~~kI~~~i~e~ 75 (78)
T PRK13669 20 FEKL-EKDPN-LDVLEYGCLGYCGICSE-----GL--FALVNGEVV-----EG-ETPEELVENIYAHLEEN 75 (78)
T ss_pred HHHH-HhCCC-ceEEEcchhhhCcCccc-----Cc--eEEECCeEe-----ec-CCHHHHHHHHHHHHhhc
Confidence 4444 44555 77787776544322221 23 334488777 33 48999999999988763
No 351
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=20.27 E-value=2.1e+02 Score=17.11 Aligned_cols=64 Identities=19% Similarity=0.225 Sum_probs=34.6
Q ss_pred CChhhhchHHHHHHHHHHhCCCeEEEEEEC-----CCCHHHHHHcCCCcccEEEEEECCeEEeeeeecCCCCHHHHHHHH
Q 029575 107 WCGPCRLVAPAVEWLAQEYGDRLTVVKIDH-----DANPQLIEEYKVYGLPTLILFKNGQEVPESRREGAITKLKLKEYI 181 (191)
Q Consensus 107 wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~-----d~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~i 181 (191)
+|++|++..=.++...- +..+.++ +. ...+.+.+.-.-..+|++.. .+|+.+ .....|.++|
T Consensus 1 ~sP~a~Rv~i~l~~~gl--~~~~~~v--~~~~~~~~~~~~~~~~~p~~~VP~L~~-~~g~vi--------~eS~~I~~yL 67 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGL--PYEIKVV--PLIPKGEQKPPEFLALNPRGKVPVLVD-PDGTVI--------NESLAILEYL 67 (70)
T ss_dssp T-HHHHHHHHHHHHHTG--TCEEEEE--ETTTTBCTTCHBHHHHSTT-SSSEEEE-TTTEEE--------ESHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCC--CCEEEEE--eeecCccccChhhhccCcCeEEEEEEE-CCCCEe--------eCHHHHHHHH
Confidence 59999998866666532 3223333 32 22245655555667999865 466644 2444555555
Q ss_pred HH
Q 029575 182 DT 183 (191)
Q Consensus 182 ~~ 183 (191)
++
T Consensus 68 ~~ 69 (70)
T PF13409_consen 68 EE 69 (70)
T ss_dssp HH
T ss_pred hc
Confidence 43
Done!