Query 029576
Match_columns 191
No_of_seqs 128 out of 236
Neff 2.8
Searched_HMMs 29240
Date Tue Mar 26 01:03:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029576.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029576hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2das_A Zinc finger MYM-type pr 87.0 0.39 1.3E-05 34.2 2.6 34 92-134 19-53 (62)
2 2l8e_A Polyhomeotic-like prote 83.1 0.26 8.8E-06 33.1 0.2 30 93-135 18-47 (49)
3 2iyb_E Testin, TESS, TES; LIM 79.5 1 3.6E-05 29.2 2.2 29 95-134 34-62 (65)
4 1lv3_A Hypothetical protein YA 73.9 0.65 2.2E-05 33.2 -0.1 33 94-141 10-42 (68)
5 3j21_V 50S ribosomal protein L 57.1 12 0.00041 26.4 3.8 34 94-136 5-41 (66)
6 4a17_T RPL24, 60S ribosomal pr 54.2 9.3 0.00032 31.1 3.2 34 94-136 6-42 (158)
7 2zkr_u 60S ribosomal protein L 52.1 15 0.00052 29.8 4.1 33 94-135 4-39 (157)
8 1x61_A Thyroid receptor intera 50.2 17 0.00058 23.3 3.5 30 90-133 32-61 (72)
9 1vq8_U 50S ribosomal protein L 50.2 21 0.00072 25.1 4.1 34 94-136 4-40 (66)
10 2xqn_T Testin, TESS; metal-bin 50.0 12 0.00039 26.8 2.8 31 90-133 92-122 (126)
11 2cur_A Skeletal muscle LIM-pro 49.1 17 0.00058 23.2 3.3 31 90-134 30-60 (69)
12 3iz5_Z 60S ribosomal protein L 48.8 14 0.00047 30.3 3.4 34 94-136 6-42 (162)
13 2jtn_A LIM domain-binding prot 48.6 12 0.00043 28.6 3.0 28 96-133 150-177 (182)
14 1x6a_A LIMK-2, LIM domain kina 48.5 17 0.00059 23.9 3.4 33 90-134 40-72 (81)
15 3izc_Z 60S ribosomal protein R 48.4 14 0.00049 29.9 3.4 34 94-136 4-40 (155)
16 1x64_A Alpha-actinin-2 associa 48.2 13 0.00043 25.3 2.7 30 90-133 50-79 (89)
17 1x4k_A Skeletal muscle LIM-pro 45.9 18 0.00062 23.1 3.1 26 96-133 36-61 (72)
18 2l3k_A Rhombotin-2, linker, LI 45.7 15 0.00051 26.5 2.9 31 90-133 35-65 (123)
19 2d8x_A Protein pinch; LIM doma 42.2 12 0.00041 24.1 1.7 27 95-133 33-59 (70)
20 1wig_A KIAA1808 protein; LIM d 40.1 15 0.00052 24.2 2.0 31 90-133 30-60 (73)
21 2cu8_A Cysteine-rich protein 2 39.4 20 0.00069 23.4 2.5 28 95-133 38-65 (76)
22 2cuq_A Four and A half LIM dom 39.1 26 0.00088 22.9 3.0 27 95-133 43-69 (80)
23 1iml_A CRIP, cysteine rich int 38.3 23 0.00077 23.1 2.7 28 95-133 29-56 (76)
24 1wyh_A SLIM 2, skeletal muscle 38.2 30 0.001 22.0 3.2 27 95-133 35-61 (72)
25 1jjd_A Metallothionein, SMTA; 38.0 19 0.00065 24.6 2.2 31 95-136 9-39 (55)
26 3f6q_B LIM and senescent cell 36.7 11 0.00037 23.9 0.8 25 96-132 42-66 (72)
27 1a7i_A QCRP2 (LIM1); LIM domai 36.0 18 0.00062 23.9 1.9 27 95-133 36-62 (81)
28 2d8z_A Four and A half LIM dom 35.6 30 0.001 22.0 2.9 30 90-133 30-59 (70)
29 2egq_A FHL1 protein; LIM domai 34.6 23 0.00079 23.0 2.2 27 95-133 48-74 (77)
30 1v6g_A Actin binding LIM prote 30.9 28 0.00095 23.0 2.2 31 90-133 40-70 (81)
31 2xjy_A Rhombotin-2; oncoprotei 30.2 29 0.001 24.7 2.3 30 90-130 28-57 (131)
32 1x63_A Skeletal muscle LIM-pro 29.9 29 0.00098 22.8 2.1 27 95-133 45-71 (82)
33 1x4l_A Skeletal muscle LIM-pro 29.1 27 0.00094 22.4 1.8 26 95-132 37-62 (72)
34 1m3v_A FLIN4, fusion of the LI 28.4 21 0.00072 25.7 1.3 33 89-133 30-62 (122)
35 2rgt_A Fusion of LIM/homeobox 28.3 27 0.00093 26.3 1.9 30 95-134 95-124 (169)
36 2co8_A NEDD9 interacting prote 28.0 29 0.00098 23.3 1.8 26 95-130 44-70 (82)
37 1x3h_A Leupaxin; paxillin fami 27.7 31 0.001 22.5 1.9 26 96-133 44-69 (80)
38 1g47_A Pinch protein; LIM doma 27.5 19 0.00065 23.3 0.8 26 95-132 41-66 (77)
39 1nyp_A Pinch protein; LIM doma 27.1 29 0.00099 21.9 1.6 30 90-133 30-59 (66)
40 1x68_A FHL5 protein; four-and- 27.0 35 0.0012 22.3 2.1 27 90-129 34-60 (76)
41 2jw6_A Deformed epidermal auto 26.9 33 0.0011 21.3 1.9 37 90-138 6-42 (52)
42 2dj7_A Actin-binding LIM prote 26.6 28 0.00096 23.4 1.6 28 90-131 41-68 (80)
43 2dar_A PDZ and LIM domain prot 26.6 34 0.0011 23.1 2.0 31 90-134 50-80 (90)
44 1x62_A C-terminal LIM domain p 26.5 18 0.00061 24.0 0.6 30 90-133 40-69 (79)
45 4fc8_A Transcription protein R 26.2 25 0.00084 29.8 1.5 52 87-140 64-123 (219)
46 4gvb_B VP12.5, KP6 killer toxi 26.0 13 0.00045 27.1 -0.2 10 4-13 1-10 (81)
47 2l4z_A DNA endonuclease RBBP8, 23.4 21 0.00072 26.2 0.5 26 96-130 91-116 (123)
48 1j2o_A FLIN2, fusion of rhombo 23.3 33 0.0011 24.3 1.5 26 96-130 33-58 (114)
49 2d8y_A Eplin protein; LIM doma 22.1 34 0.0012 23.2 1.3 24 95-129 44-67 (91)
50 1wg2_A Zinc finger (AN1-like) 22.0 40 0.0014 23.7 1.7 28 92-130 14-41 (64)
51 1wfh_A Zinc finger (AN1-like) 21.9 45 0.0016 23.4 2.0 28 92-130 14-41 (64)
52 1wfp_A Zinc finger (AN1-like) 21.1 48 0.0016 23.9 2.0 28 92-130 24-51 (74)
53 1b8t_A Protein (CRP1); LIM dom 20.9 74 0.0025 24.4 3.2 28 95-134 144-171 (192)
54 2ehe_A Four and A half LIM dom 20.8 54 0.0018 21.5 2.1 23 96-129 46-68 (82)
No 1
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=86.98 E-value=0.39 Score=34.19 Aligned_cols=34 Identities=35% Similarity=0.712 Sum_probs=28.6
Q ss_pred HhhccccCcCCCCCCCceEEEecchhhhhccCC-ccccChHHHH
Q 029576 92 FLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGD-SAFCSLECRQ 134 (191)
Q Consensus 92 FL~~C~lCkK~L~~gkDIYMYR~~l~~~~~~Ge-kAFCS~ECR~ 134 (191)
+-..|..|||.|..|+.-|-.. |+ .-|||..|-.
T Consensus 19 ~~v~C~~CKk~lqKGQtAyqrk---------Gs~~LFCS~~CL~ 53 (62)
T 2das_A 19 AKITCANCKKPLQKGQTAYQRK---------GSAHLFCSTTCLS 53 (62)
T ss_dssp SSCBCTTTCCBCCTTSCCEECT---------TCCCEESSHHHHH
T ss_pred cccChhhccchhhcCceeeeec---------CchhheechHHHc
Confidence 4567999999999999988888 54 5799999954
No 2
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=83.15 E-value=0.26 Score=33.06 Aligned_cols=30 Identities=30% Similarity=0.840 Sum_probs=23.5
Q ss_pred hhccccCcCCCCCCCceEEEecchhhhhccCCccccChHHHHH
Q 029576 93 LRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECRQQ 135 (191)
Q Consensus 93 L~~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ECR~~ 135 (191)
+..|-.|.+.|.+.. ++ ..+-|||..||..
T Consensus 18 ~~~C~~CG~~i~~~~----~~---------r~krFCS~sCR~~ 47 (49)
T 2l8e_A 18 LLKCEYCGKYAPAEQ----FR---------GSKRFCSMTCAKR 47 (49)
T ss_dssp EEECTTTCCEEEGGG----CT---------TTSSSCSHHHHHH
T ss_pred CCcChhccCcccccc----CC---------CCCccCCHHHHhh
Confidence 457999999986543 25 6789999999975
No 3
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=79.55 E-value=1 Score=29.20 Aligned_cols=29 Identities=34% Similarity=0.894 Sum_probs=22.5
Q ss_pred ccccCcCCCCCCCceEEEecchhhhhccCCccccChHHHH
Q 029576 95 TCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECRQ 134 (191)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ECR~ 134 (191)
.|..|++.|. + ..|.-+ ..+.||+.+|-.
T Consensus 34 ~C~~C~~~L~-~-~~f~~~---------~g~~yC~~~C~~ 62 (65)
T 2iyb_E 34 LCSCCSKCLI-G-QKFMPV---------EGMVFCSVECKK 62 (65)
T ss_dssp BCTTTCCBCT-T-SCCEEE---------TTEEESSHHHHH
T ss_pred ECCCCCCcCC-C-CceEEE---------CCEEecCHHHhh
Confidence 4999999995 3 346667 789999999953
No 4
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=73.88 E-value=0.65 Score=33.24 Aligned_cols=33 Identities=27% Similarity=0.533 Sum_probs=22.3
Q ss_pred hccccCcCCCCCCCceEEEecchhhhhccCCccccChHHHHHHHHHHH
Q 029576 94 RTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECRQQQMNQDE 141 (191)
Q Consensus 94 ~~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ECR~~qm~~DE 141 (191)
..|-.|+|...-.++ . -...|||..||. |.+-+
T Consensus 10 ~~CP~Cgkp~~W~~~-~------------~~rPFCSeRCr~--iDLg~ 42 (68)
T 1lv3_A 10 VNCPTCGKTVVWGEI-S------------PFRPFCSKRCQL--IDLGE 42 (68)
T ss_dssp EECTTTCCEEECSSS-S------------SCCSSSSHHHHH--HHHSC
T ss_pred CcCCCCCCccccccc-C------------CCCcccCHHHHh--hhHHH
Confidence 469999999842222 2 356999999985 44443
No 5
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=57.13 E-value=12 Score=26.35 Aligned_cols=34 Identities=29% Similarity=0.712 Sum_probs=27.6
Q ss_pred hccccCcCCCCCCCceEEEecchhhhhccCCc---cccChHHHHHH
Q 029576 94 RTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDS---AFCSLECRQQQ 136 (191)
Q Consensus 94 ~~C~lCkK~L~~gkDIYMYR~~l~~~~~~Gek---AFCS~ECR~~q 136 (191)
..|+.|..+|-||.-+-.-| .|- -|||.-|+...
T Consensus 5 ~~C~Fcg~~IyPG~G~~~Vr---------~Dgkvf~FcssKC~k~f 41 (66)
T 3j21_V 5 NVCSYCGKPFEPGTGKMYVR---------NDGRVLFFCSRKCERYY 41 (66)
T ss_dssp CBCTTTCSBCCTTCCEEEEC---------SSSCEEEESSHHHHHHH
T ss_pred eEecCcCCcccCCCCeEEEe---------cCCcEEEEECHHHHHHH
Confidence 46999999999999876666 553 49999998764
No 6
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T
Probab=54.18 E-value=9.3 Score=31.11 Aligned_cols=34 Identities=26% Similarity=0.545 Sum_probs=27.5
Q ss_pred hccccCcCCCCCCCceEEEecchhhhhccCCc---cccChHHHHHH
Q 029576 94 RTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDS---AFCSLECRQQQ 136 (191)
Q Consensus 94 ~~C~lCkK~L~~gkDIYMYR~~l~~~~~~Gek---AFCS~ECR~~q 136 (191)
..|++|..+|-||.-+..-| .|- -|||.-|+...
T Consensus 6 ~~CsFcg~~IyPG~G~~fVr---------~Dgkvf~FcssKC~k~f 42 (158)
T 4a17_T 6 GTCSFCEYRIYPGRGQRFIA---------KDGRGFFFLTKKAKCLS 42 (158)
T ss_dssp EECTTTCCEECTTCCEEEEC---------TTSCEEEESCHHHHHHH
T ss_pred EEecCcCCcccCCCCeEEEe---------eCCceEEEEcHHHHHHH
Confidence 46999999999999877666 564 49999996654
No 7
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=52.08 E-value=15 Score=29.77 Aligned_cols=33 Identities=21% Similarity=0.503 Sum_probs=26.3
Q ss_pred hccccCcCCCCCCCceEEEecchhhhhccCCc---cccChHHHHH
Q 029576 94 RTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDS---AFCSLECRQQ 135 (191)
Q Consensus 94 ~~C~lCkK~L~~gkDIYMYR~~l~~~~~~Gek---AFCS~ECR~~ 135 (191)
..|++|..+|-||.-|..-| .|. -|||.-|+..
T Consensus 4 ~~C~Fcg~~IyPG~G~~~Vr---------~Dgkvf~FcssKC~k~ 39 (157)
T 2zkr_u 4 ELCSFSGYKIYPGHGRRYAR---------TDGKVFQFLNAKCESA 39 (157)
T ss_dssp CBCTTTCCBCCTTCCEEEEC---------TTSCEEEESSHHHHHH
T ss_pred eeecCcCCcccCCCceEEEe---------eCCcEEEEecHHHHHH
Confidence 57999999999999776666 453 4999999654
No 8
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.23 E-value=17 Score=23.35 Aligned_cols=30 Identities=27% Similarity=0.685 Sum_probs=20.8
Q ss_pred hhHhhccccCcCCCCCCCceEEEecchhhhhccCCccccChHHH
Q 029576 90 PHFLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECR 133 (191)
Q Consensus 90 ~~FL~~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ECR 133 (191)
..| .|..|++.|. + +.|.-+ ..+.|| ..|-
T Consensus 32 ~CF--~C~~C~~~L~-~-~~~~~~---------~~~~yC-~~cy 61 (72)
T 1x61_A 32 GCF--VCSTCRAQLR-G-QHFYAV---------ERRAYC-EGCY 61 (72)
T ss_dssp TTC--BCSSSCCBCT-T-SCEEES---------SSCEEE-HHHH
T ss_pred cCC--cccccCCcCC-c-CcCEee---------CCeEEC-HHHH
Confidence 355 3999999994 3 456666 678998 4454
No 9
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=50.18 E-value=21 Score=25.10 Aligned_cols=34 Identities=29% Similarity=0.760 Sum_probs=27.1
Q ss_pred hccccCcCCCCCCCceEEEecchhhhhccCCc---cccChHHHHHH
Q 029576 94 RTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDS---AFCSLECRQQQ 136 (191)
Q Consensus 94 ~~C~lCkK~L~~gkDIYMYR~~l~~~~~~Gek---AFCS~ECR~~q 136 (191)
..|+.|..+|-||.-|-.-| .|. -|||.-|+...
T Consensus 4 ~~C~Fcg~~IyPG~G~~~Vr---------~Dgkvf~FcssKc~k~f 40 (66)
T 1vq8_U 4 RECDYCGTDIEPGTGTMFVH---------KDGATTHFCSSKCENNA 40 (66)
T ss_dssp CBCTTTCCBCCSSCCEEEEC---------TTSCEEEESCHHHHHHH
T ss_pred eEecCcCCcccCCCceEEEe---------eCCcEEEEECHHHHHHH
Confidence 57999999999999766555 453 49999998764
No 10
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=50.02 E-value=12 Score=26.76 Aligned_cols=31 Identities=35% Similarity=0.876 Sum_probs=22.9
Q ss_pred hhHhhccccCcCCCCCCCceEEEecchhhhhccCCccccChHHH
Q 029576 90 PHFLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECR 133 (191)
Q Consensus 90 ~~FL~~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ECR 133 (191)
..| .|..|++.|. + +-|.-+ ..+.||..+|.
T Consensus 92 ~CF--~C~~C~~~l~-~-~~f~~~---------~~~~yC~~~~~ 122 (126)
T 2xqn_T 92 ECF--LCSCCSKCLI-G-QKFMPV---------EGMVFCSVECK 122 (126)
T ss_dssp TTS--BCTTTCCBCT-T-SEEEEE---------TTEEESSHHHH
T ss_pred CCc--CcCCCCCccC-C-CeeEeE---------CCEEcchHHhh
Confidence 345 3888899995 3 556556 78999998885
No 11
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.06 E-value=17 Score=23.23 Aligned_cols=31 Identities=26% Similarity=0.780 Sum_probs=21.6
Q ss_pred hhHhhccccCcCCCCCCCceEEEecchhhhhccCCccccChHHHH
Q 029576 90 PHFLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECRQ 134 (191)
Q Consensus 90 ~~FL~~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ECR~ 134 (191)
..| .|..|++.|. + +.|.-+ ..+.|| ..|-.
T Consensus 30 ~CF--~C~~C~~~L~-~-~~~~~~---------~~~~yC-~~cy~ 60 (69)
T 2cur_A 30 DCF--VCVTCSKKLA-G-QRFTAV---------EDQYYC-VDCYK 60 (69)
T ss_dssp TTT--BCTTTCCBCT-T-SCEEEC---------SSCEEE-HHHHH
T ss_pred CcC--EECCCCCCCC-C-CccEeE---------CCEEEC-HHHhH
Confidence 355 3899999996 3 446666 688999 45643
No 12
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Z
Probab=48.81 E-value=14 Score=30.26 Aligned_cols=34 Identities=26% Similarity=0.651 Sum_probs=27.3
Q ss_pred hccccCcCCCCCCCceEEEecchhhhhccCCc---cccChHHHHHH
Q 029576 94 RTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDS---AFCSLECRQQQ 136 (191)
Q Consensus 94 ~~C~lCkK~L~~gkDIYMYR~~l~~~~~~Gek---AFCS~ECR~~q 136 (191)
..|++|..+|-||.-|..-| .|- -|||.-|+...
T Consensus 6 e~CsFcG~~IyPG~G~~fVr---------~Dgkvf~FcssKC~k~f 42 (162)
T 3iz5_Z 6 ELCRFSGQKIYPGKGIRFIR---------ADSQVFLFANSKCKRYF 42 (162)
T ss_dssp EECTTTCSEECSSCSEEEEC---------TTSCEEEECSHHHHHHH
T ss_pred EEecCcCCcccCCCCeEEEe---------cCCCEEEEECHHHHHHH
Confidence 46999999999999876666 553 49999997654
No 13
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=48.61 E-value=12 Score=28.58 Aligned_cols=28 Identities=29% Similarity=0.710 Sum_probs=13.7
Q ss_pred cccCcCCCCCCCceEEEecchhhhhccCCccccChHHH
Q 029576 96 CGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECR 133 (191)
Q Consensus 96 C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ECR 133 (191)
|..|++.|..|...|+-+ ..+.|| ..|-
T Consensus 150 C~~C~~~L~~g~~f~~~~---------~g~~yC-~~cy 177 (182)
T 2jtn_A 150 CVVCKRQLATGDEFYLME---------DSRLVC-KADY 177 (182)
T ss_dssp CTTTCCCCCTTCEEEECT---------TSCEEC-HHHH
T ss_pred CCCCCCCCCCCCceEEcc---------CCEEEC-HHHH
Confidence 555555554443333333 456777 4443
No 14
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.51 E-value=17 Score=23.91 Aligned_cols=33 Identities=21% Similarity=0.587 Sum_probs=21.6
Q ss_pred hhHhhccccCcCCCCCCCceEEEecchhhhhccCCccccChHHHH
Q 029576 90 PHFLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECRQ 134 (191)
Q Consensus 90 ~~FL~~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ECR~ 134 (191)
..| .|..|++.|..+...++-+ ..+.||. .|-.
T Consensus 40 ~CF--~C~~C~~~L~~g~~f~~~~---------~~~~~C~-~c~~ 72 (81)
T 1x6a_A 40 ECF--ACMSCKVIIEDGDAYALVQ---------HATLYCG-KCHN 72 (81)
T ss_dssp TSC--BCTTTCCBCCTTSCEEECS---------SSCEEEH-HHHH
T ss_pred ccC--CccCCCCccCCCCcEEEee---------CCEEECH-HHHH
Confidence 355 3999999997665533225 6788984 4543
No 15
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z 3o58_V 3o5h_V 3u5e_W 3u5i_W 4b6a_W 1s1i_S 2x7n_D
Probab=48.44 E-value=14 Score=29.90 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=27.4
Q ss_pred hccccCcCCCCCCCceEEEecchhhhhccCCc---cccChHHHHHH
Q 029576 94 RTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDS---AFCSLECRQQQ 136 (191)
Q Consensus 94 ~~C~lCkK~L~~gkDIYMYR~~l~~~~~~Gek---AFCS~ECR~~q 136 (191)
..|++|..+|-||.-+..-| .|- -|||.-|....
T Consensus 4 ~~CsFcg~~IyPG~G~~fVr---------~Dgkvf~FcssKC~k~f 40 (155)
T 3izc_Z 4 EIDSFSGAKIYPGRGTLFVR---------GDSKIFRFQNSKSASLF 40 (155)
T ss_dssp EECTTTCSEECTTCCEEEEC---------TTCCEEEESSHHHHHHH
T ss_pred eEecCcCCcccCCCCeEEEe---------cCCCEEEEEcHHHHHHH
Confidence 46999999999999876666 554 49999997654
No 16
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=48.25 E-value=13 Score=25.28 Aligned_cols=30 Identities=20% Similarity=0.475 Sum_probs=20.5
Q ss_pred hhHhhccccCcCCCCCCCceEEEecchhhhhccCCccccChHHH
Q 029576 90 PHFLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECR 133 (191)
Q Consensus 90 ~~FL~~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ECR 133 (191)
..| .|..|++.|..+ .|..+ ..+.|| .+|-
T Consensus 50 ~CF--~C~~C~~~L~~~--~~~~~---------~g~~yC-~~~y 79 (89)
T 1x64_A 50 ECF--VCADCNLNLKQK--GYFFV---------EGELYC-ETHA 79 (89)
T ss_dssp TTC--CCSSSCCCTTTS--CCEEE---------TTEEEC-HHHH
T ss_pred cCC--EecCCCCCCCCC--CeEeE---------CCEEEC-HHHH
Confidence 355 389999999644 35556 678898 4554
No 17
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.90 E-value=18 Score=23.11 Aligned_cols=26 Identities=19% Similarity=0.696 Sum_probs=18.8
Q ss_pred cccCcCCCCCCCceEEEecchhhhhccCCccccChHHH
Q 029576 96 CGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECR 133 (191)
Q Consensus 96 C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ECR 133 (191)
|..|++.|..+ .|.-+ ..+.||. .|-
T Consensus 36 C~~C~~~L~~~--~~~~~---------~~~~yC~-~cy 61 (72)
T 1x4k_A 36 CHRCQQPIGTK--SFIPK---------DNQNFCV-PCY 61 (72)
T ss_dssp CSSSCCCCCSS--SEEEE---------TTEEEEH-HHH
T ss_pred ccccCCccCCC--ccCcc---------CCeEECH-HHH
Confidence 88999999654 45556 6789984 553
No 18
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=45.73 E-value=15 Score=26.53 Aligned_cols=31 Identities=19% Similarity=0.530 Sum_probs=21.7
Q ss_pred hhHhhccccCcCCCCCCCceEEEecchhhhhccCCccccChHHH
Q 029576 90 PHFLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECR 133 (191)
Q Consensus 90 ~~FL~~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ECR 133 (191)
..| .|..|++.|..+. .|.-+ ..+.|| ..|-
T Consensus 35 ~CF--~C~~C~~~L~~g~-~f~~~---------~g~~yC-~~cy 65 (123)
T 2l3k_A 35 ECF--KCAACQKHFSVGD-RYLLI---------NSDIVC-EQDI 65 (123)
T ss_dssp TTC--BCTTTCCBCCTTC-EEEEC---------SSSEEE-GGGH
T ss_pred ccC--ccccCCCCCCCCC-cEEee---------CCEEEc-HHHh
Confidence 456 3999999996554 45555 678999 4454
No 19
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.17 E-value=12 Score=24.06 Aligned_cols=27 Identities=22% Similarity=0.625 Sum_probs=19.9
Q ss_pred ccccCcCCCCCCCceEEEecchhhhhccCCccccChHHH
Q 029576 95 TCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECR 133 (191)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ECR 133 (191)
.|..|++.|..+ .|..+ ..+.||. .|-
T Consensus 33 ~C~~C~~~L~~~--~f~~~---------~g~~yC~-~c~ 59 (70)
T 2d8x_A 33 RCDLCQEVLADI--GFVKN---------AGRHLCR-PCH 59 (70)
T ss_dssp BCSSSCCBCSSS--CCEEE---------TTEEECH-HHH
T ss_pred EeCCCCCcCCCC--ccEeE---------CCeEECH-HHh
Confidence 499999999755 46667 7888984 454
No 20
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.09 E-value=15 Score=24.20 Aligned_cols=31 Identities=23% Similarity=0.497 Sum_probs=21.9
Q ss_pred hhHhhccccCcCCCCCCCceEEEecchhhhhccCCccccChHHH
Q 029576 90 PHFLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECR 133 (191)
Q Consensus 90 ~~FL~~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ECR 133 (191)
..| .|..|++.|..+. .|..+ +.+.||. +|-
T Consensus 30 ~CF--~C~~C~~~L~~~~-~f~~~---------~~~~yC~-~C~ 60 (73)
T 1wig_A 30 SCA--LCVRCGQMFAEGE-EMYLQ---------GSSIWHP-ACR 60 (73)
T ss_dssp TTS--CCSSSCCCCCSSC-CCEEE---------TTEEECT-THH
T ss_pred CcC--EeCCCCCCCCCCC-eeEee---------CCEEECh-HHC
Confidence 355 3999999996554 45556 6889996 464
No 21
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.41 E-value=20 Score=23.37 Aligned_cols=28 Identities=25% Similarity=0.606 Sum_probs=20.2
Q ss_pred ccccCcCCCCCCCceEEEecchhhhhccCCccccChHHH
Q 029576 95 TCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECR 133 (191)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ECR 133 (191)
.|..|++.|.. ..|.-+ ..+.||...|-
T Consensus 38 ~C~~C~~~L~~--~~~~~~---------~g~~yC~~~cy 65 (76)
T 2cu8_A 38 KCERCSKTLTP--GGHAEH---------DGKPFCHKPCY 65 (76)
T ss_dssp BCSSSCCBCCT--TSCEEE---------TTEEECTTTHH
T ss_pred CCCCCCCccCC--CceEeE---------CCEEecchHHH
Confidence 38999999963 346666 78899964454
No 22
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.10 E-value=26 Score=22.91 Aligned_cols=27 Identities=26% Similarity=0.812 Sum_probs=19.4
Q ss_pred ccccCcCCCCCCCceEEEecchhhhhccCCccccChHHH
Q 029576 95 TCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECR 133 (191)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ECR 133 (191)
.|..|++.|. +. .|.-+ ..+.|| .+|-
T Consensus 43 ~C~~C~~~L~-~~-~~~~~---------~~~~yC-~~cy 69 (80)
T 2cuq_A 43 VCTGCQTPLA-GQ-QFTSR---------DEDPYC-VACF 69 (80)
T ss_dssp BCSSSCCBCT-TC-CEEEC---------SSSEEE-HHHH
T ss_pred CcccCCCcCC-CC-eeEeE---------CCEEEC-HHHH
Confidence 4899999994 43 45556 788999 4554
No 23
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=38.34 E-value=23 Score=23.12 Aligned_cols=28 Identities=21% Similarity=0.622 Sum_probs=20.1
Q ss_pred ccccCcCCCCCCCceEEEecchhhhhccCCccccChHHH
Q 029576 95 TCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECR 133 (191)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ECR 133 (191)
.|..|++.|..+ . |.-+ ..+.||...|-
T Consensus 29 ~C~~C~~~L~~~-~-~~~~---------~g~~yC~~~cy 56 (76)
T 1iml_A 29 KCEKCGKTLTSG-G-HAEH---------EGKPYCNHPCY 56 (76)
T ss_dssp BCTTTCCBCCTT-T-EEEE---------TTEEEETTTHH
T ss_pred CccccCccCCCC-c-eECc---------CCeEeeCHHHH
Confidence 389999999655 3 5556 68899964454
No 24
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.18 E-value=30 Score=22.01 Aligned_cols=27 Identities=19% Similarity=0.587 Sum_probs=18.4
Q ss_pred ccccCcCCCCCCCceEEEecchhhhhccCCccccChHHH
Q 029576 95 TCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECR 133 (191)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ECR 133 (191)
.|..|++.|..+ . |.-+ ..+.||. .|-
T Consensus 35 ~C~~C~~~L~~~-~-~~~~---------~~~~yC~-~cy 61 (72)
T 1wyh_A 35 LCSGCEQPLGSR-S-FVPD---------KGAHYCV-PCY 61 (72)
T ss_dssp BCTTTCCBTTTS-C-EEEE---------TTEEEEH-HHH
T ss_pred eECCCCCcCCCC-c-cCCc---------CCeEECH-HHH
Confidence 388999999654 3 5455 5788984 443
No 25
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=37.95 E-value=19 Score=24.61 Aligned_cols=31 Identities=19% Similarity=0.415 Sum_probs=21.3
Q ss_pred ccccCcCCCCCCCceEEEecchhhhhccCCccccChHHHHHH
Q 029576 95 TCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECRQQQ 136 (191)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ECR~~q 136 (191)
.|..|.=-+. .++.+| + +-+.|||.+|....
T Consensus 9 aC~~C~c~Vs-~~eai~-~---------dGK~YCSe~Ca~gH 39 (55)
T 1jjd_A 9 ACEPCLCNVD-PSKAID-R---------NGLYYCSEACADGH 39 (55)
T ss_dssp SSTTCCCCBC-TTTSEE-S---------SSCEESSHHHHHTS
T ss_pred cCCCCeeEec-hHHhhh-c---------CCeEEehHHHHccC
Confidence 4777776663 345443 4 67999999997654
No 26
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=36.65 E-value=11 Score=23.89 Aligned_cols=25 Identities=16% Similarity=0.526 Sum_probs=18.8
Q ss_pred cccCcCCCCCCCceEEEecchhhhhccCCccccChHH
Q 029576 96 CGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLEC 132 (191)
Q Consensus 96 C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~EC 132 (191)
|..|++.|..+ .|.-+ ..+.|| .+|
T Consensus 42 C~~C~~~L~~~--~~~~~---------~g~~yC-~~~ 66 (72)
T 3f6q_B 42 CAQCFQQFPEG--LFYEF---------EGRKYC-EHD 66 (72)
T ss_dssp CTTTCCCCGGG--CCEEE---------TTEEEC-HHH
T ss_pred ccCCCCCCCCC--CeEeE---------CCeEeC-HHH
Confidence 89999999765 46666 678898 444
No 27
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=36.05 E-value=18 Score=23.89 Aligned_cols=27 Identities=19% Similarity=0.602 Sum_probs=19.0
Q ss_pred ccccCcCCCCCCCceEEEecchhhhhccCCccccChHHH
Q 029576 95 TCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECR 133 (191)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ECR 133 (191)
.|..|++.|..+ . |..+ ..+.|| ..|-
T Consensus 36 ~C~~C~~~L~~~-~-~~~~---------~~~~yC-~~cy 62 (81)
T 1a7i_A 36 LCMVCRKNLDST-T-VAIH---------DAEVYC-KSCY 62 (81)
T ss_dssp ECSSSCCEECSS-C-CEEE---------TTEEEC-SHHH
T ss_pred ccCCCCCCCCCC-C-eEee---------CCEEEC-HHHH
Confidence 388999999644 3 5556 688999 4443
No 28
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.65 E-value=30 Score=22.00 Aligned_cols=30 Identities=37% Similarity=0.912 Sum_probs=20.4
Q ss_pred hhHhhccccCcCCCCCCCceEEEecchhhhhccCCccccChHHH
Q 029576 90 PHFLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECR 133 (191)
Q Consensus 90 ~~FL~~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ECR 133 (191)
..| .|..|++.|. + ..|..+ ..+.|| ..|-
T Consensus 30 ~CF--~C~~C~~~L~-~-~~~~~~---------~~~~yC-~~cy 59 (70)
T 2d8z_A 30 ECF--VCTACRKQLS-G-QRFTAR---------DDFAYC-LNCF 59 (70)
T ss_dssp TTS--BCSSSCCBCT-T-SCCEES---------SSSEEC-HHHH
T ss_pred CCC--ccCCCCCcCC-c-CceEee---------CCeEEC-HHHH
Confidence 355 3899999995 3 356666 678998 3443
No 29
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=34.61 E-value=23 Score=22.98 Aligned_cols=27 Identities=19% Similarity=0.808 Sum_probs=18.7
Q ss_pred ccccCcCCCCCCCceEEEecchhhhhccCCccccChHHH
Q 029576 95 TCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECR 133 (191)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ECR 133 (191)
.|..|++.|. + ..|.-+ ..+.||. +|-
T Consensus 48 ~C~~C~~~L~-~-~~f~~~---------~~~~yC~-~cy 74 (77)
T 2egq_A 48 HCKKCSVNLA-N-KRFVFH---------QEQVYCP-DCA 74 (77)
T ss_dssp BCSSSCCBCT-T-SCCCEE---------TTEECCH-HHH
T ss_pred EehhcCCCCC-C-CccEeE---------CCEEECh-HHh
Confidence 3889999996 3 345556 6789984 553
No 30
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.95 E-value=28 Score=22.95 Aligned_cols=31 Identities=29% Similarity=0.902 Sum_probs=20.8
Q ss_pred hhHhhccccCcCCCCCCCceEEEecchhhhhccCCccccChHHH
Q 029576 90 PHFLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECR 133 (191)
Q Consensus 90 ~~FL~~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ECR 133 (191)
..| .|..|++.|..+ +.|..+ |...||. .|-
T Consensus 40 ~CF--~C~~C~~~L~~~-~~~~~~---------~~~~~C~-~C~ 70 (81)
T 1v6g_A 40 DCF--VCAVCRLPFPPG-DRVTFN---------GKECMCQ-KCS 70 (81)
T ss_dssp TTS--SCSSSCCCCCSS-SCEEEE---------TTEEEEH-HHH
T ss_pred cCC--ccccCCCCCCCC-CEEEeC---------CCCEECh-hhh
Confidence 355 389999999644 556667 6666873 453
No 31
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=30.25 E-value=29 Score=24.68 Aligned_cols=30 Identities=23% Similarity=0.442 Sum_probs=21.4
Q ss_pred hhHhhccccCcCCCCCCCceEEEecchhhhhccCCccccCh
Q 029576 90 PHFLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSL 130 (191)
Q Consensus 90 ~~FL~~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ 130 (191)
..| .|..|++.|......|..+ ..+.||..
T Consensus 28 ~CF--~C~~C~~~L~~~~~~~~~~---------~g~~yC~~ 57 (131)
T 2xjy_A 28 DCL--SCDLCGCRLGEVGRRLYYK---------LGRKLCRR 57 (131)
T ss_dssp TTC--BCTTTCCBCSSTTCCEEEE---------TTEEECHH
T ss_pred HHc--ccCcCCCccccCCCeEEEE---------CCEEeecC
Confidence 355 3889999996434567677 78999943
No 32
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.92 E-value=29 Score=22.79 Aligned_cols=27 Identities=30% Similarity=0.881 Sum_probs=19.3
Q ss_pred ccccCcCCCCCCCceEEEecchhhhhccCCccccChHHH
Q 029576 95 TCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECR 133 (191)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ECR 133 (191)
.|..|++.|..+ .|.-+ ..+.||. .|-
T Consensus 45 ~C~~C~~~L~~~--~~~~~---------~~~~yC~-~cy 71 (82)
T 1x63_A 45 TCSNCKQVIGTG--SFFPK---------GEDFYCV-TCH 71 (82)
T ss_dssp CCSSSCCCCTTS--CEEEE---------TTEEEEH-HHH
T ss_pred chhhCCCccCCC--ccEee---------CCEEECH-HHH
Confidence 388999999654 45556 7889984 553
No 33
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.07 E-value=27 Score=22.38 Aligned_cols=26 Identities=31% Similarity=0.834 Sum_probs=18.8
Q ss_pred ccccCcCCCCCCCceEEEecchhhhhccCCccccChHH
Q 029576 95 TCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLEC 132 (191)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~EC 132 (191)
.|..|++.|. + ..|.-+ ..+.||. +|
T Consensus 37 ~C~~C~~~L~-~-~~f~~~---------~g~~yC~-~c 62 (72)
T 1x4l_A 37 NCKKCSLSLV-G-RGFLTE---------RDDILCP-DC 62 (72)
T ss_dssp BCSSSCCBCT-T-SCCEEC---------SSSEECH-HH
T ss_pred EeccCCCcCC-C-CccEeE---------CCEEECh-hH
Confidence 3899999995 3 345556 7889985 44
No 34
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=28.39 E-value=21 Score=25.67 Aligned_cols=33 Identities=12% Similarity=0.222 Sum_probs=23.6
Q ss_pred chhHhhccccCcCCCCCCCceEEEecchhhhhccCCccccChHHH
Q 029576 89 TPHFLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECR 133 (191)
Q Consensus 89 ~~~FL~~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ECR 133 (191)
...|- |..|++.|.+....|..+ ..+.||. .|-
T Consensus 30 ~~CF~--C~~C~~~L~~~~~~~~~~---------~g~~yC~-~cy 62 (122)
T 1m3v_A 30 SRCLK--CSSCQAQLGDIGTSSYTK---------SGMILCR-NDY 62 (122)
T ss_dssp HHHHC--CSSSCCCTTTSEECCEEE---------TTEEECH-HHH
T ss_pred hhCCC--cCCCCCcccccCCeEEEE---------CCeeecH-HHH
Confidence 45674 999999996433567777 7889984 443
No 35
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=28.31 E-value=27 Score=26.35 Aligned_cols=30 Identities=27% Similarity=0.712 Sum_probs=18.9
Q ss_pred ccccCcCCCCCCCceEEEecchhhhhccCCccccChHHHH
Q 029576 95 TCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECRQ 134 (191)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ECR~ 134 (191)
.|..|++.|..|...|+-+ ..+.||. .|-.
T Consensus 95 ~C~~C~~~L~~g~~f~~~~---------~g~~~C~-~c~~ 124 (169)
T 2rgt_A 95 ACVVCKRQLATGDEFYLME---------DSRLVCK-ADYE 124 (169)
T ss_dssp BCTTTCCBCCTTCEEEECT---------TSCEEEH-HHHH
T ss_pred cCCCCCCCCCCCCceEEcc---------CCeEECH-HHHH
Confidence 4777888886665555544 5578884 4543
No 36
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.99 E-value=29 Score=23.32 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=17.4
Q ss_pred ccccCcCCCCCCCceEEE-ecchhhhhccCCccccCh
Q 029576 95 TCGLCKRRLVPGRDIYMY-RLFLLMCFCRGDSAFCSL 130 (191)
Q Consensus 95 ~C~lCkK~L~~gkDIYMY-R~~l~~~~~~GekAFCS~ 130 (191)
.|..|++.|.. ...|.| + ..+.||..
T Consensus 44 ~C~~C~~~L~~-~~~~~~~~---------~g~~yC~~ 70 (82)
T 2co8_A 44 RCHTCEATLWP-GGYEQHPG---------DGHFYCLQ 70 (82)
T ss_dssp BCSSSCCBCCT-TSEECCTT---------TCCCEETT
T ss_pred EEcCCCCCcCC-CceeEeCc---------CCEEEChH
Confidence 38889999954 343434 5 67888854
No 37
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.67 E-value=31 Score=22.52 Aligned_cols=26 Identities=23% Similarity=0.577 Sum_probs=18.7
Q ss_pred cccCcCCCCCCCceEEEecchhhhhccCCccccChHHH
Q 029576 96 CGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECR 133 (191)
Q Consensus 96 C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ECR 133 (191)
|..|++.|..+ . |..+ ..+.||. .|-
T Consensus 44 C~~C~~~L~~~-~-~~~~---------~~~~yC~-~~y 69 (80)
T 1x3h_A 44 CGDCFTSFSTG-S-FFEL---------DGRPFCE-LHY 69 (80)
T ss_dssp CSSSCCBSCSS-C-CEES---------SSCEECH-HHH
T ss_pred hhhCCCCCCCC-c-EEeE---------CCEEECH-HHH
Confidence 88999999654 3 5556 7889984 443
No 38
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.49 E-value=19 Score=23.31 Aligned_cols=26 Identities=15% Similarity=0.419 Sum_probs=18.2
Q ss_pred ccccCcCCCCCCCceEEEecchhhhhccCCccccChHH
Q 029576 95 TCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLEC 132 (191)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~EC 132 (191)
.|..|++.|..+ + |.-+ ..+.|| ..|
T Consensus 41 ~C~~C~~~L~~~-~-~~~~---------~g~~yC-~~~ 66 (77)
T 1g47_A 41 VCAQCFQQFPEG-L-FYEF---------EGRKYC-EHD 66 (77)
T ss_dssp CCTTTCCCCGGG-C-SEEE---------TTEEEC-HHH
T ss_pred eECCCCCCCCCC-C-eEeE---------CCeEeC-HHH
Confidence 388999999655 4 5555 578898 444
No 39
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=27.12 E-value=29 Score=21.90 Aligned_cols=30 Identities=27% Similarity=0.642 Sum_probs=20.6
Q ss_pred hhHhhccccCcCCCCCCCceEEEecchhhhhccCCccccChHHH
Q 029576 90 PHFLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECR 133 (191)
Q Consensus 90 ~~FL~~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ECR 133 (191)
..| .|..|++.|. + +.|..+ ..+.||. .|-
T Consensus 30 ~CF--~C~~C~~~L~-~-~~~~~~---------~g~~yC~-~~y 59 (66)
T 1nyp_A 30 EHF--VCAKCEKPFL-G-HRHYER---------KGLAYCE-THY 59 (66)
T ss_dssp TTC--BCTTTCCBCS-S-SCCEEE---------TTEEECH-HHH
T ss_pred CcC--EECCCCCCCC-C-CceEeE---------CCcEECH-HHH
Confidence 355 3899999996 3 456666 6889984 443
No 40
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.03 E-value=35 Score=22.26 Aligned_cols=27 Identities=33% Similarity=0.834 Sum_probs=19.0
Q ss_pred hhHhhccccCcCCCCCCCceEEEecchhhhhccCCccccC
Q 029576 90 PHFLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCS 129 (191)
Q Consensus 90 ~~FL~~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS 129 (191)
..| .|..|++.|. + +.|.-+ ..+.||.
T Consensus 34 ~CF--~C~~C~~~L~-~-~~f~~~---------~g~~yC~ 60 (76)
T 1x68_A 34 ECF--NCGKCSVSLV-G-KGFLTQ---------NKEIFCQ 60 (76)
T ss_dssp GGC--BCTTTCCBCS-S-SCEEEE---------TTEEEET
T ss_pred ccC--ChhhCCCcCC-C-CceEeE---------CCEEECH
Confidence 345 4889999996 3 445556 6788986
No 41
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=26.94 E-value=33 Score=21.34 Aligned_cols=37 Identities=19% Similarity=0.437 Sum_probs=20.8
Q ss_pred hhHhhccccCcCCCCCCCceEEEecchhhhhccCCccccChHHHHHHHH
Q 029576 90 PHFLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECRQQQMN 138 (191)
Q Consensus 90 ~~FL~~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ECR~~qm~ 138 (191)
..+...|..|.+.- ++.|---....|||.+|..+...
T Consensus 6 ~~~~~~C~~C~~~~------------~~~C~~C~~~~YCs~~CQ~~~W~ 42 (52)
T 2jw6_A 6 ERKEQSCVNCGREA------------MSECTGCHKVNYCSTFCQRKDWK 42 (52)
T ss_dssp -----CCSSSSSSC------------SEECTTTCSSEESSHHHHHHHTT
T ss_pred cccCCcCCCCCCCC------------cCcCCCCCCEeecCHHHHHHHHH
Confidence 34567899998841 11122224677999999876655
No 42
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.64 E-value=28 Score=23.39 Aligned_cols=28 Identities=25% Similarity=0.697 Sum_probs=20.6
Q ss_pred hhHhhccccCcCCCCCCCceEEEecchhhhhccCCccccChH
Q 029576 90 PHFLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLE 131 (191)
Q Consensus 90 ~~FL~~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~E 131 (191)
..| .|..|++.|. + .|..+ ..+.||...
T Consensus 41 ~CF--~C~~C~~~L~-~--~~~~~---------~g~~yC~~~ 68 (80)
T 2dj7_A 41 SCF--KCQTCSVILT-G--EYISK---------DGVPYCESD 68 (80)
T ss_dssp TTC--BCSSSCCBCS-S--CCEEE---------TTEEECTTH
T ss_pred ccC--CcCcCCCCcC-C--CeEEE---------CCEEECHHH
Confidence 355 3899999996 3 47777 789999653
No 43
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.59 E-value=34 Score=23.14 Aligned_cols=31 Identities=19% Similarity=0.565 Sum_probs=20.6
Q ss_pred hhHhhccccCcCCCCCCCceEEEecchhhhhccCCccccChHHHH
Q 029576 90 PHFLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECRQ 134 (191)
Q Consensus 90 ~~FL~~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ECR~ 134 (191)
..| .|..|++.|.. ..|.-+ ..+.||. .|-.
T Consensus 50 ~CF--~C~~C~~~L~~--~~f~~~---------~g~~yC~-~cy~ 80 (90)
T 2dar_A 50 EEF--NCAHCKNTMAY--IGFVEE---------KGALYCE-LCYE 80 (90)
T ss_dssp TTC--BCSSSCCBCSS--SCBEES---------SSCEECH-HHHH
T ss_pred cCC--ccCCCCCCCCC--CEeEeE---------CCEEECH-HHHH
Confidence 345 38899999963 346556 6788984 5543
No 44
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.54 E-value=18 Score=23.98 Aligned_cols=30 Identities=17% Similarity=0.425 Sum_probs=20.0
Q ss_pred hhHhhccccCcCCCCCCCceEEEecchhhhhccCCccccChHHH
Q 029576 90 PHFLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECR 133 (191)
Q Consensus 90 ~~FL~~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ECR 133 (191)
..|- |..|++.|. + ..|..+ ..+.|| ..|-
T Consensus 40 ~CF~--C~~C~~~L~-~-~~~~~~---------~g~~yC-~~cy 69 (79)
T 1x62_A 40 ECYV--CTDCGTNLK-Q-KGHFFV---------EDQIYC-EKHA 69 (79)
T ss_dssp TTTS--CSSSCCCHH-H-HCCEES---------SSCEEC-HHHH
T ss_pred CcCe--eCCCCCCCC-C-CCeEeE---------CCEEEC-HHHH
Confidence 3453 889999994 2 346566 688898 4454
No 45
>4fc8_A Transcription protein RTR1; zinc finger; 2.50A {Kluyveromyces lactis}
Probab=26.25 E-value=25 Score=29.82 Aligned_cols=52 Identities=13% Similarity=0.267 Sum_probs=26.7
Q ss_pred CCchhHhhccc--cCcCCCCCCCceEEEecchhh------hhccCCccccChHHHHHHHHHH
Q 029576 87 LETPHFLRTCG--LCKRRLVPGRDIYMYRLFLLM------CFCRGDSAFCSLECRQQQMNQD 140 (191)
Q Consensus 87 ~e~~~FL~~C~--lCkK~L~~gkDIYMYR~~l~~------~~~~GekAFCS~ECR~~qm~~D 140 (191)
.+..+....|. +|.|.+..-++ .|++...- -.+..-+-|||.+|-..-+...
T Consensus 64 IeERnI~k~CGYPLC~~~~~~~~~--ky~Is~~tk~~~~nkvyd~l~~fCS~~Cy~aS~f~~ 123 (219)
T 4fc8_A 64 VQERNLVKRCGYPLCSKSQARVRD--PFADVQMTNFLRQNNPYAYLTEYCTKAHFRCSQFYQ 123 (219)
T ss_dssp HHHHHTTTCCSSTTCCSCCSCC---------------------CGGGTCSSHHHHHHHHHHH
T ss_pred HHHHHhcccCCCCCCCCcccccCC--CceeeeccccccccCcHHHHHhhhhHHHHHHHHHHH
Confidence 34455567786 69988865444 44432111 0122458999999976655544
No 46
>4gvb_B VP12.5, KP6 killer toxin subunit beta; antifungal protein, secreted; 1.80A {Ustilago maydis virus P6}
Probab=25.98 E-value=13 Score=27.06 Aligned_cols=10 Identities=70% Similarity=1.185 Sum_probs=5.5
Q ss_pred CCCCCCCCCC
Q 029576 4 GKRPRPPMKR 13 (191)
Q Consensus 4 GKRpRppMkR 13 (191)
||||||-|-.
T Consensus 1 gkrprpvmcq 10 (81)
T 4gvb_B 1 GKRPRPVMCQ 10 (81)
T ss_dssp ---CCCEEEE
T ss_pred CCCCCceEEE
Confidence 8999998754
No 47
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=23.43 E-value=21 Score=26.22 Aligned_cols=26 Identities=15% Similarity=0.305 Sum_probs=13.3
Q ss_pred cccCcCCCCCCCceEEEecchhhhhccCCccccCh
Q 029576 96 CGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSL 130 (191)
Q Consensus 96 C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ 130 (191)
|..|++.|.+....|..+ ..+.||..
T Consensus 91 C~~C~~~L~~~g~~f~~~---------dg~~yC~~ 116 (123)
T 2l4z_A 91 CSSCQAQLGDIGTSSYTK---------SGMILCRN 116 (123)
T ss_dssp CTTTCCBGGGTTCCCBCS---------SSCCBCHH
T ss_pred cCcCCCcccccCCceEEE---------CCEEeCHH
Confidence 556666664211233334 56777743
No 48
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=23.27 E-value=33 Score=24.32 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=19.1
Q ss_pred cccCcCCCCCCCceEEEecchhhhhccCCccccCh
Q 029576 96 CGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSL 130 (191)
Q Consensus 96 C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ 130 (191)
|..|++.|......|..+ ..+.||..
T Consensus 33 C~~C~~~L~~~g~~~~~~---------~g~~yC~~ 58 (114)
T 1j2o_A 33 CDLCGCRLGEVGRRLYYK---------LGRKLCRR 58 (114)
T ss_dssp CSSSCSCCCCSSSCCCCB---------TTBCCCHH
T ss_pred ccccCCchhcCCCeeEEE---------CCeeechH
Confidence 889999996422456667 78899843
No 49
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.07 E-value=34 Score=23.16 Aligned_cols=24 Identities=25% Similarity=0.718 Sum_probs=16.8
Q ss_pred ccccCcCCCCCCCceEEEecchhhhhccCCccccC
Q 029576 95 TCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCS 129 (191)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS 129 (191)
.|..|++.|..+ + |.-+ ..+.||.
T Consensus 44 ~C~~C~~~L~~~-~-~~~~---------~g~~yC~ 67 (91)
T 2d8y_A 44 RCSYCNNKLSLG-T-YASL---------HGRIYCK 67 (91)
T ss_dssp BCTTTCCBCCTT-T-CCCS---------SSCCCCH
T ss_pred eeCCCCCCCCCC-C-cEeE---------CCEEECH
Confidence 388899999654 3 4445 6788883
No 50
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=22.04 E-value=40 Score=23.67 Aligned_cols=28 Identities=18% Similarity=0.329 Sum_probs=20.2
Q ss_pred HhhccccCcCCCCCCCceEEEecchhhhhccCCccccCh
Q 029576 92 FLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSL 130 (191)
Q Consensus 92 FL~~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ 130 (191)
+-..|..|+|+|+-- .|--| -..-||+.
T Consensus 14 ~~~rC~~C~kkvgl~--~f~Cr---------Cg~~FC~~ 41 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVM--GFKCK---------CGSTFCGS 41 (64)
T ss_dssp CSCSCTTTCCCCTTS--CEECT---------TSCEECSS
T ss_pred cCCcChhhCCccccc--CeEee---------cCCEeccc
Confidence 456799999998532 35555 78889983
No 51
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=21.92 E-value=45 Score=23.43 Aligned_cols=28 Identities=25% Similarity=0.591 Sum_probs=20.4
Q ss_pred HhhccccCcCCCCCCCceEEEecchhhhhccCCccccCh
Q 029576 92 FLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSL 130 (191)
Q Consensus 92 FL~~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ 130 (191)
+-..|..|+|+|+-- .|--| -..-||+.
T Consensus 14 ~~~rC~~C~kkvgl~--~f~Cr---------Cg~~FC~~ 41 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLT--GFMCR---------CGTTFCGS 41 (64)
T ss_dssp SCCCCTTTCCCCCTT--CEECS---------SSCEECTT
T ss_pred cCCcChhhCCccCcc--CEEee---------cCCEeccc
Confidence 346799999998632 45556 78889984
No 52
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=21.07 E-value=48 Score=23.92 Aligned_cols=28 Identities=21% Similarity=0.434 Sum_probs=20.1
Q ss_pred HhhccccCcCCCCCCCceEEEecchhhhhccCCccccCh
Q 029576 92 FLRTCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSL 130 (191)
Q Consensus 92 FL~~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ 130 (191)
+-..|..|+|+++-- -|--| -..-||+.
T Consensus 24 ~~~RC~~C~kkvgL~--~f~Cr---------Cg~~FCs~ 51 (74)
T 1wfp_A 24 TATRCLSCNKKVGVT--GFKCR---------CGSTFCGT 51 (74)
T ss_dssp CCCBCSSSCCBCTTT--CEECT---------TSCEECTT
T ss_pred cCccchhhcCccccc--ceEec---------cCCEeccc
Confidence 346799999999633 35555 77889984
No 53
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=20.94 E-value=74 Score=24.38 Aligned_cols=28 Identities=18% Similarity=0.548 Sum_probs=18.8
Q ss_pred ccccCcCCCCCCCceEEEecchhhhhccCCccccChHHHH
Q 029576 95 TCGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCSLECRQ 134 (191)
Q Consensus 95 ~C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS~ECR~ 134 (191)
.|..|++.|..+ + |.-+ ..+.|| ..|-.
T Consensus 144 ~C~~C~~~L~~~-~-~~~~---------~g~~yC-~~cy~ 171 (192)
T 1b8t_A 144 RCAKCGKSLEST-T-LADK---------DGEIYC-KGCYA 171 (192)
T ss_dssp BCTTTCCBCCSS-S-EEEE---------TTEEEE-HHHHH
T ss_pred CccccCCCCCCC-c-cccc---------CCEEeC-HHHHH
Confidence 378888888543 3 5566 788898 55543
No 54
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.80 E-value=54 Score=21.48 Aligned_cols=23 Identities=22% Similarity=0.704 Sum_probs=17.4
Q ss_pred cccCcCCCCCCCceEEEecchhhhhccCCccccC
Q 029576 96 CGLCKRRLVPGRDIYMYRLFLLMCFCRGDSAFCS 129 (191)
Q Consensus 96 C~lCkK~L~~gkDIYMYR~~l~~~~~~GekAFCS 129 (191)
|..|++.|. + ..|.-+ +.+.||.
T Consensus 46 C~~C~~~L~-~-~~f~~~---------~~~~~C~ 68 (82)
T 2ehe_A 46 CCRCQRSLA-D-EPFTCQ---------DSELLCN 68 (82)
T ss_dssp CTTTCCBCS-S-CCEEEE---------TTEEEET
T ss_pred ecCCCCccC-C-CccEee---------CCEEECH
Confidence 899999996 3 356556 7788985
Done!